0	chr13	32953500	32953501	1000001	0	+	BRCA2; RIP_Alu_chr13_031_01	GTGCACTAACAAGACAGCAA	TAGATTTTGAAGTTGCAAGATG	SINE	Alu	Yc1	ttacctaccccatggactgttgtgaagattaaatgaattagtacatttactacacatagatctatttctcaaaataatgagcattcagatattagccatc<br>tgtaatgtagttggtgatgattatgattattagagtacatttataattggaggatcatttttgccgtagggaaatagaattattaatagtttgaggcacc<br>tgagaatattatgtgagaaactgattacattaaccacacccttaagatgagctctaattttgttgtatttgtcctgtttaaagccatctagttacaatag<br>atggaacttttttgttctgattgctttttattccaatatcttaaatggtcacagggttatttcagtgaagagcagttaagagccttgaataa<font color="green"><u>TCACAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCACAGGC</u></font>aaatgttgaatgataagaaacaagctcagatccagttggaaattagg<br>aaggccatggaatctgctgaacaaaaggaacaaggtttatcaagggatgtcacaaccgtgtggaagttgcgtattgtaagctattcaaaaaaagaaaaag<br>attcaggtaagtatgtaaatgctttgtttttatcagttttattaacttaaaaaatgaccttactaacaaaatgattataaatccagataaagtataaagt<br>tagtttatatcagagaagcaaaatccactactaatgcccacaaagagataatataaaagaggatctgtatttattttgaaacaaacatttaaatgataat<br>cacttcttccattgcatctttctcatctaaatgttgaatgataag	Other	<UL><LI>Miki Y, Katagiri T, Kasumi F, Yoshimoto T, Nakamura Y.Mutation analysis in the BRCA2 gene in primary breast cancers.Nat Genet. 1996 Jun;13(2):245-7.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8640237">PMID: 8640237</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Insertion-specific detection:PCR-SSCP	NA	60	NA	NA	Breast Cancer	exon:CDS:BRCA2:NM_000059:22/27
0	chr6	31466228	31466543	1000002	0	-	AluyMICB; RIP_Alu_chr6_031_01	CTCAGCCCTGCTTTCCCATCT	GCCTTCCAATGCCATTCACAG	SINE	Alu	Yb8	tgcccggagcctgcagactccaacccctcagcttgagagtcaggaccccccacagtccccacagcagcaagaagcaccacctccgggtcccaagaaagga<br>gggccccaactccaggagctgcggcccaggagctgagaacacatcggctccgggagaggacaggacttcagggacctgagatccgcccccagcaccgggg<br>gaagtggctgcctcagcggccgcgctggaacggccttccaatgccattcacaggagcagcccgggaacccaggggcctcagaaggactggtttgtccgaa<br>aagtgagaggagacggaggagaggcgaggagagcaagtgcaggagagaccagaaaatgcgggtgatgcgcgatcccgaggaggactg<font color="green"><u>AAAGGAGACAGGA<br></u></font><font color="red">GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACTAACACGG<br>TGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGCGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTACAGCCTAGGCGACAGAGACTCCGTCTCAGAAAGAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGGAGACAGGA</u></font>gatgggaaagcagggctgaggtgtggcgggaacaggcggcgtccagctccctgcactccagacagcacacc<br>tgagccccgccctgaccgcacagcgctcgcggcaacccacccggacccccggaaacgccccgccgctcccgctccgccggggaccgccaggaaccccact<br>caccagcggcggctgccgggggtgcaaaagggaaggcgacggccagaaacagcaggacccggcccagccccatggcccctacgtcgccaccttctcagct<br>gctcagcagtggccaactgaatgaaacccgtgagaagaccccgtcgaaatttagtcacctgcgccccgctcagcgaccgcttatccagtgaaaactgagg<br>cccggaacttagggcc	UCSC	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID: 15592666</a>.</LI><LI>Kulski JK, Dunn DS, Hui J, Martinez P, Romphruk AV, Leelayuwat C, Tay GK, Oka A, Inoko H.Alu polymorphism within the MICB gene and association with HLA-B alleles.Immunogenetics. 2002 Feb;53(10-11):975-9. Epub 2002 Jan 26. Erratum in:Immunogenetics 2002 Aug;54(5):365.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11862397">PMID: 11862397</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID: 15996165</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	67	665	336	MHC related	intron:MICB:NM:005931:1/6
0	chr6	30971591	30971592	1000003	0	+	AluyTF; RIP_Alu_chr6_031_02	NA	NA	SINE	Alu	NA	tgcttcagcctcccgagtagctgggattacaggtgcgtgccaccacacccagctaatttgtgtgtgtgtgtgtatttttagtagagatggggtttcacaa<br>tgttggccaggctggtctcgaactcctgacctcaggtgatccacccaccttggactcccaaagtgctgggattacaggcatgagccactgcacccggcct<br>aaaaccactggtttatatactttattttattcttattatttttttaaatttgagatggaatctcactctgtcaccgaggctggagtgcagtggcgcaatc<br>tcggctcactgcaacctctgcttcctaggtttaagagattctcctccctcagcctcccaagtagctgggattataggcgagtgccacca<font color="green"><u>TGCCTGGCTAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGCCTGGCTAA</u></font>tttttgtatttttagtagagatggggtttcaccactgttgaccaggctagtcttgaactcctaacctcaggtgatccac<br>ccatctcagcctcccaaagtgctgggattagaggcatgacccaccttgcccagccaggtttatatactttaaacaggtgaactatatggtatgtaaatta<br>tagctcaatacagctcttaaatttttaccaggcacattatgtaaataaaaatttttatttcctggccggacatggtggctcacacctgtgatcccagcat<br>tctgggaggctgaggcaggcagatcacttgaggccaggagtttgagaccagcctggccaacatggcaaaaccctgtctctactaaaaatacaaaaattag<br>ccatgcgcgg	Other	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID: 15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID: 15996165</a>.</LI><LI>Dunn DS, Inoko H, Kulski JK.Dimorphic Alu element located between the TFIIH and CDSN genes within the major histocompatibility complex.Electrophoresis. 2003 Aug;24(16):2740-8.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12929169">PMID: 12929169</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	710	426	MHC related	intergenic	
0	chr6	29680469	29680470	1000004	0	-	AluyHF; RIP_Alu_chr6_029_01	GCCTCATGGCCTGAATCTGCCAGTGTCCTT	GTAACTGACCTGCCCTCTATAGTATAGTCT	SINE	Alu	NA	cctttcctcagcaggcctaattgaagcaagtcccctcctatttctcctagagtgtaggtcaaagcaatagatgtgggatgtggtgttgtcagaattcaaa<br>gaggctcaccaggcagtgtgcttccttccttgtagtgaggatgcaagatgcaacactttgtcttttactgtggaggagaaactcctggatgtcctcaacc<br>actggatgaataaaacttcaccacagtggccactcctgaatctctgtgtggtttatcttccatctgctggagagcacgtgttttgccaaggccttcagca<br>tacttcccatctcctactcatccatcctagtcaacatgatgttgttgatgaaataagctgatttaccattctataggatgccag<font color="green"><u>GTTCTTCAGATCTCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GTTCTTCAGATCTCTT</u></font>aagactatactatagagggcaggtcagttacaataaccctgaggccaattatcaataaatgtgttgtggatccc<br>acatgaatcacttcatgtatagtttttctcattggaatggaaaggaatgcactcaccaaatccacagctgcacactttgtgcctgaggccttatcaatct<br>gctctaccagtgatatccagccagcatggcagctgcaattatgactcctactttttcaagtctgaagtaatctcattcattctttaggccccatcaggct<br>tccttggggacagattgctggattacgtgaagataacaggcaactccaacagcacccctcatccttcagctctctaatggtggtgctacacctaaaatac<br>ctacagtacc	Other	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID: 15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID: 15996165</a>.</LI><LI>Dunn DS, Naruse T, Inoko H, Kulski JK.The association between HLA-A alleles and young Alu dimorphisms near the HLA-J,-H, and -F genes in workshop cell lines and Japanese and Australian populations.J Mol Evol. 2002 Dec;55(6):718-26.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12486530">PMID: 12486530</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	68	605	445	MHC related	intergenic
0	chr6	29818873	29818874	1000005	0	+	AluyHG;1104685373306; RIP_Alu_chr6_029_02	CAGGACAACCAGTAAAGATGCTGG;NA	GCTTCAGTTAACATGCAAGTTTATGCC;NA	SINE	Alu	Yb8	acaaaaagaaagagaacaagtaatcttaactattgattccaccatcgtgcagtgcaatagtcaatggctgcaactgaaaaatcaagcaatgttaataaag<br>aaatggtgctttggtgcttagatatgtgaaagtaaagtcaaaagaatcagctgaaacttgaaagtggttgctccctagaaaggcagaaatagagaagaga<br>ggactctccctagaaaggcagagaagactctcatttttctcagaaagtcctgcacaaatatttactctttccattatgtgcaattgtaacttcgaataaa<br>ataaaaacaaaagcttcagttaacatgcaagtttatgcctaatgacaactttgtttaacaatgataaagggctaaccaaaatat<font color="green"><u>AAAAACACTTAAACAT<br></u></font><font color="red">GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAA<br>GCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAACACTTAAACAT</u></font>aaaacagcatgtataaatgtgtatgtgacatcaaccctgaatacaaacttgaaagaatatgtctataaacaactctgg<br>atagatagcccatgaatgaattccccactccagcatctttactggttgtcctgtgagcctaggcagggaggggaccaggacctgactagggtccctaata<br>ctcttgcttccaggcaagtcctgcatgcactcctgctgcaccaagggctcccatccctgccttggtctgtttcataggtgctcccctaactctctgccac<br>cactgccttacctgggtggagctgaggccgccctgaccaagaagagcaccagccatctatgtgccccaaaaccagaaagtcaaaagaaaccttgcaacag<br>ggtcag	Other;Venter	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID: 15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID: 15996165</a>.</LI><LI>Kulski JK, Martinez P, Longman-Jacobsen N, Wang W, Williamson J, Dawkins RL, Shiina T, Naruse T, Inoko H. The association between HLA-A alleles and an Alu dimorphism near HLA-G.J Mol Evol. 2001 Aug;53(2):114-23.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11479682">PMID: 11479682</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA;NA	60;NA	540;NA	218;NA	MHC related;NA	intergenic
0	chrY	17074643	17074942	1000006	0	-	Ya5NBC219; RIP_Alu_chrY_015_01	CCTGGCAACCACCATTCTAC	AAACCTGGAGGGCATTCTTT	SINE	Alu	Ya5	aatagaggtataaagggcaaaaaagtttgggaagtgtttattatgtgacctccatgacagatgtatggagtttccctcctttttcttttttctttttgta<br>tgtacttggtactatttataataaaacagtttatataaaaatattaaaataacaatgaccttctattgtgtatatatatacaacattttctttatccttc<br>atctgttgataaatgcaggttgattccatgtctttaccattgtgaataatgctatcattcagccttaaagaaggaatcctgtcattcgcaacaacatggg<br>taaacctggagggcattcttttaagtgaaataagccagataagtaaagacaaatattgcatgaacttacttatatgtgaaggct<font color="green"><u>AAAAAAGTTCAATGCA<br></u></font><font color="red">GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCG<br>TCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAGTTCAATGCA</u></font>tagaagtagagagtagaatggtggttgccaggggctgggagagggagtggattgggagagggggacatgttgctcaaagcatac<br>aaagtttaagttacagaagcggaataacttttggtgatccactgcacagtattgtgacaatggtgaataatgatgcattgtgtatttcaaaattgttaaa<br>agagattataaacattcttaccactgggacataagtatataaagtgatggaaatgctaattgtcttgattcaatcattccaaagtgtatacacatatcat<br>atcatcacattacacccaataaatgtatatgttttgtttttaccaattaaaaatgaagcaatataaaataagatttaaaaataccaacaacaatattgtt<br>	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	445	129	NA	intergenic
0	chr7	107767006	107767312	1000007	0	-	Yb8NBC7; RIP_Alu_chr7_107_01	AGGTTCATCCATGTTGTAGG	CTTAGAAGGGAATCCAGGAG	SINE	Alu	Yb8	gggccttaaccccagatattgtggtgtaattggtatggaatgtgacccgggaagcaggattcaaaaaaaaaaaaaaaacacaaaaaaaaaaaccctggtg<br>attttaatgtgcagtaaagtttggaaagcactgggttatgcccttctcttagaagggaatccaggagcagagcaagtgtgaggggcaaattaatccgttt<br>taggtattggcaagccatcagtggttctcaaccctggctacatctcagaatcccctagggagtgttttatacacattgacacctgggtcccaccccagag<br>attctgccttaattagtttgaggtgggcctgagcactggtagtttaatatctcctcaggtgcatacaatggtatattattcagcctt<font color="green"><u>AAAAAAGAAAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAGAAAGAA</u></font>attctgacacatcctacaacatggatgaacctttaggacattatgctacgtgaaataggccagtcacaaaaaagacaaat<br>attgtgcgattctacatatgttagatacttagagtagtcaaatccatagagacagaaagtagaacggtggctgccaggggctcggggagacatgaagact<br>tcttgtttaatggatacaaagtttcaactttgcaagatgaaaagtgttctggagatcggttgcacacaatgtaaatgtaattaacactactgaagtgtac<br>aggtaaaaatgattaagatggtcaattttatgtaggtgtatttctaccacaattaaaaataaatatttcaaaaaggaagtcattaaaaatatcttctcaa<br>gtgattc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	605	285	NA	intron:LAMB4:NM:007356:1/34
0	chr11	24792957	24792958	1000008	0	-	Ya5-MLS18; RIP_Alu_chr11_024_01	CTATGATGTGCTATGGAAGGTAGGT	CCTAGTCCTCATAAATTAGTAACCTG	SINE	Alu	Ya5	atgagacttattcactactgggagaacagtacggggaaaactgcccccatgattcaattatctccacctggcccccaccctttgacacgtggggattatt<br>acaaattaaggtgagatttgggtagggacacagccaaaccatgtcagtaattaagcttttatctccaaatttggaggtagtgtatttttcttaattcatg<br>taattcattagtactagtaagaacagacttgaatatggtcttaatatattctcaatatatgcaaagtcctggccctgtgttgtctttgtgaaaaatgtga<br>actatgatgtgctatggaaggtaggtttctaacttcaaggtatttgcatcatgttaagaaaataattctgagaaatgcaaagttaaa<font color="green"><u>AATCACATGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTACCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AATCACATGAATA</u></font>gatacgatgccatgtatatacataagacactataacatacatgcacacactattgagtactccatcattggtactca<br>caacttgtttctcacttattcaatagccttcaatgatgacctactgtctactaaagctggttatcatggactataactctttattaagaaaggttgcctt<br>taatacacaggttactaatttatgaggactaggttctgcaatgtgaaagctttctatagtatcaaatctatatttcccatgaaaaattaaagcagacaaa<br>taaaaataaacaaaatctgaaaattcattgcggctctaggtcagatatgacttaggctttactattcagacatgatctgtgcaatatgtggatacaggaa<br>tttgttactt	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	62	631	309	NA	intron:LUZP2:NM:001009909:5/12
0	chr1	180857566	180857567	1000009	0	+	Ya5-MLS09; RIP_Alu_chr1_177_01	AGATGTTGGACGTTGGCAGTAAG	TAATCAACTCTGTCCCACATTACCA	SINE	Alu	Ya5	cgttggcagtaagccgcagcaaggcagttaggaaagtacgtgagcctgatgacgcgaaggtgatgcctccatctgtccgcttagtggttattaaattgct<br>gggaaagacctgcctttattttcctatcatcttttccccattactttgcattattcaggaaataattatttattcccaaatgcagttttctaagcagtga<br>ccacaaaaatttcttattctaaggaaaataattaagaaaataaccctatctgtggcattgttttaaaatgtgggatacaaatctggtaagcagatttcag<br>gtcattattgttttcttttaatggtttacatgaaattttcctctcaaaaaacaagtacctcttactgtataacatttgagtttttaaaattgagatagca<br><font color="green"><u>nnnnn</u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA<br>AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNN</font><font color="green"><u>nnnn<br>n</u></font>tctgagagaaaaaaagaaagttgaatttgtagctctctcaactacaaaatcaccacacttttctcaaatctaataggaattcagtgtcattacagatac<br>ggtctctagtgaccaggtgaagacaattgaagctttggtagaacttctgcaaaagttaggtaaagaagaataaatccaatttatcagctttgttcatatt<br>ctttttctgagtgatctaaatttttcttgcttgtgatcattagctaagacaaggagtgttaaaggttttctaaatgcaaacacatacgtttctgcatttc<br>agaagtcagtcttgatagtaaatcctacaaactctcaactttctgcattgtattttaagtctatacaatgttagagcacatggtaatgtgggacagagtt<br>g	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	incomplete repeat sequence TSD unavailable	57	1134	813	NA	exon:3UTR:XPR1:NM_004736
0	chr5	77048360	77048681	1000010	0	-	Yb8NBC489; RIP_Alu_chr5_077_01	CACAAGGATGTGGATTTTGCT	TGCCTCAGCCTCCAAAGTAG	SINE	Alu	Yb8	catgactttggtaatctttggtaaggttaatttggtaaatttgatctcaaaattctcttcagtagtttaaaatcttaaggtcatgttttgttaaattaaa<br>acctcatttttttttctcccccactgggaatttgggttcttaggagttaggtagcaggagtgtagaacatgttttcagtgaagtttataaaacacaagga<br>tgtggattttgctaaagaaaatgtaatttttttttaagagttgctttaaaataaagaaaaaattaggccgggtgcggtggctcatacctgtaatccccgc<br>actttgagaggctgaggtggacagattaacttgaagtcagtagtttgagactagcctggccagcatggtgaaactccgtctctatt<font color="green"><u>AAAAATAAGCCGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAGAAAA<br>ACAAAACAAAACAAAACAAAAC</font><font color="green"><u>AAAAATAAGCCGGA</u></font>catggtggcatgtgcctgtaatcccagctactttggaggctgaggcagtaggatcatttgaacc<br>tgggaggcggaggttgcagtgagcggagatcagataaaactaaatggataaaaagaaaaaactaagccagaaaggaaaatcggaaggaaggaaggaaaaa<br>attatacagataaacctaaatggataaaaagaaaaaactaaacaaaagttacctctgagacctgtggttacagagaagatagttaatgtgggggaagggt<br>aaaaccaagtaactattaaaccatatggtataatgtaaacaaattgttccatttcgtaggctggtatcatcagcttcctgagaaacctttactataatgg<br>attgtaaaaataactactttaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	591	255	NA	intron:TBCA:NM:004607:1/4
0	chr17	6422376	6422690	1000011	0	+	Yb7AD84; RIP_Alu_chr17_006_01	ATCCAGCCTTGTTTACAAAT	GAGTAAATGCTGGCAAAAAT	SINE	Alu	Yb7	tagaactgattaataaaagtaagagctatttctttgaaaagaccatcgaaataggtaagcctttggcaaaacttactaagaatgagagagaaagagaaag<br>atggagggatggggaaaaacacaaatgaacaatgaggggaatgagaaagaagtcataactttcggaagttaattgttttcaacttgatgaagggcatttc<br>tggaatcctagggcgagggccatgtttgttggtaaaacattggaacgtttccatcacagcactacagtcaggatccaaccagaaagcccgctaccgcttg<br>tcactctgcattgacctggagatcccatgcaatgcagtttaaaaggaaaaataagaaaggagagtaaatgctggcaaaaatataactgttaagatttgta<br><font color="green"><u></u></font><font color="red">GGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCGTCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u></u></font>ttagctgagcgtggtggcgggcagctgtagtcccagctactgggggactgaggcaggagaatgacgtgaacctgggaggcggggc<br>ttgcagtgagccgagatagcgccactgcactccagcctgggcgacagagtgagactccgtctcagaaaaaaaaaaaaaagatttgtaaacaaggctggat<br>gcagtggctcacacctgtaatcctagcactttgggaggccaagtcgggcagatcacttgaggtcaggagttcgacaccagcctggccaacatggtgaaac<br>cccatctctactaaaaatataaaaagtagccaggcatggtggcgggcgcctgtaatcctggctattcgggaggctgaggtaggagaatcacttgaaccca<br>ggaggcagaggttgc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	NA	NA	NA	intergenic
0	chr17	14417943	14417944	1000012	0	-	Yb7AD3; RIP_Alu_chr17_014_01	AAGAAAAACAACCACCTTTG	TGTATTCAAGGGCAAGAAAT	SINE	Alu	Yb7	aaactcccatcaatcactgtgaaacacagtccagaatgaagaaacaacttaaaaacaggtgtgaacctagcaaccatctcaaggctgaagcacaggcaat<br>tttgcaacacctccctatccccaatccagaatgtctttttaatccggtttacaggctggaattctactaaagacgaactcacagtcaaaaattacaaaac<br>acggaagaaacactccgtcctaaaacttagtcagtagatgagaaaccaaaccataatacacccaaggaagtagaataaatctaaacagaaaattaaatca<br>atatcttaacgtttgttaaaagaaagataaaatgaagaagtggactttgtattcaagggcaagaaattatcatttgaaaaatagtttt<font color="green"><u>AAAAGAAACAAG<br></u></font><font color="red">TATTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAACAAG</u></font>tagaaatcttgc<br>aggtaaaaaaatagtaaatataatttaaagctcaattgagttttatctaatataatataatgtccatgaaggcaaaggtggttgtttttctttttgtctg<br>ctttgtttattgtttaaaccctaacacttagaacagtacctgatacataatttgcaatcaatatatgtatttttaatggataaataaattagtgggttaa<br>atggtagattggcagagaaaaattagtgagttagaaaatagaactaaataaaccacacagaaaacataccaagagacaaaaacattaaagaaagaaagaa<br>agttaagaggcctggacaagagaaagcaatactgtatcacaacattcatctaataaggattccagaataacaaagt	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	NA	NA	NA	intergenic
0	chr9	41843169	41843170	1000013	0	+	52556; RIP_Alu_chr9_041_01	CACAGGCTCCTCACATTCAGCATG	GGGATGCTGAGGCAGGAGAATCG	SINE	Alu	Ya5	tgttttggggttccaaatagaaagcatcttgaataacgtagattaaataacagtaaatgcaaatgcagacaccaaacatatcctagaggaatcttggaga<br>actttagtcttgctgctttttatttttacatctcatcagcagtactgacgtttcatcaggatcaatggagaattaacaatggagttaatattttttccct<br>ttattagtttggggaaaaggtagatctcataatctggtgtactccttttggaagcttttcatattatcctatcctttatcacaggctcctcacattcagc<br>atgtcctaaaccaaatattttttctcctacccattgactcctccccctatgattctcatcattatcaatggaatttgactt<font color="green"><u>AGAAATCTATTCCTTTCTC<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGAAATCTATTCCTTTCTC</u></font>ttctccttccctatagtcaatcattaaatcttgtagatattatctcctatcactgatcatttgatataact<br>caccaagtttcactaataataatcaaagtggtaatacatttgacaaactccaaaaaaagataatttttttctttttctttttatatggggtctcgctcta<br>tctctcagtctggagtgcaatggcatgatcttggctcattgcaacttctgcctctggggttcaagcgattctcctgactcagcatcccaagcagctggga<br>ctacaggcatgcgccatcacgcccggctaatgtttttcgtacttttactagagacagggtttcactatattggctaggctggtctcaaattcctgacctc<br>aagcaatctg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr5	174760806	174760807	1000014	0	+	2684;1104685439578; RIP_Alu_chr5_174_01	CAGCGGGCAGAGGTTGCAATGAGC;NA	CTCAAGAGATTCTGGTTCAGAAGTAC;NA	SINE	Alu	Y	ggattttcagattcagctcgtctaagatggggggaaaggggccaggcatggtggttcacgcctgtaatcccagcactttgggaggccaaggcgggtgaat<br>cacctgaggtgaggatttcgagacctgcctggtcaacatggcaaaaccccgtctctactaaaaatataaaaattagccaggtgtgggggcatgcgcctgt<br>agtcccagctacttgggaggctgaggcaggagaactgcttgaacccagcgggcagaggttgcaatgagctgaggtggagccacttcactccagactggca<br>gaaaaagtgagactccgtctcaaaatgaataaataaataaatagataaataaataaaatggggggaaaggggagtgaacttgtt<font color="green"><u>AAAAATGCCAATTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAATGCCAATTTCT</u></font>gagtccaaatctggtacttctgaaccagaatctcttgaggtgggtccagtatctgcatcactaaaaaagctcct<br>caaatgcattttatgaacagattattacacacaaccccgccctccagagctcatggtccagcactggtagcagacaagggagcaaggaccatgcccatgg<br>atatggccatgacaggacagcaatgagaacctatccccagggccagcccaggccagagccaggaaggacctccaagaggaagtgatcttaagcggagcct<br>gaacagggataggcaccaaccaggcagagtgatgagagagtgtctgccatctgccaggggcagaaggagatgtggtacatttggggaaaggaaaagaact<br>ctgagagtcc	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr1	120610108	120610109	1000015	0	+	Ya5ACA707; RIP_Alu_chr1_120_01	TCTCTTCACCTATGAAGCAGGAC	CAGAGGTGGAGGGCATAGTT	SINE	Alu	Ya5	attggccacaagccaaacacaggaacactcaaaagtttagaagggtgtgctgcaactggtaccttagcaaaacacaataataaattaagaggattcaaga<br>agccttcactgtagactctaagaagatttaagatttgtaccgagaaacggcttctaaatctcttctactgcattagtttagcatctaaagaacacctgtc<br>taaaaatcaaaatatctaaatcctatcctttgagtcaacttgactaacactcaacttgactacctaaaagctagctaataatcgcagcacctcagcagag<br>cagaggtggagggcatagttttatgcactgagatcctataataaaagaagccctatgtgtcagagtaatcccatttctgatatcatattattt<font color="green"><u>AATACTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AATACTT</u></font>aatttttcaaatcactttacaattatatttattattccctacaattctctaaagcaggttattcctttagtcctgcttcatag<br>gtgaggagactacatatcatgaagattaagttatttaccaaaacaagttaatgatagaccaaggattattaccctcagactgtctcattgatcatactcc<br>tctctatcctaaagctacacttaaagctttcactcaaagaaaaaggaaaagcaaaaacaccatcatatatgctctttattaaatgcttcagaaacaacgg<br>ctctgcttcatcactacaaagcctcctggtccacttctgaaattcttagtgacctagacgtgtacgaaatttgaactttccaagaagtatctagttggtg<br>ctgaacaacc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	189	NA	intron:NOTCH2:NM:024408:1/34
0	chr7	103856450	103856752	1000016	0	-	Ya5ACA1598; RIP_Alu_chr7_103_01	CCCAGCTGGTTTTTCTAAATG	AATAGGCGAGAGGGAATGGT	SINE	Alu	Ya5	cccacttgggtcatttcttatcccataaagataaaactaaatctataaacctgctccttatttttccatctggcttttcatctgtattccttatttttta<br>tttcactactggcaaaacctaaaatcacctatgtcagaaacctaaatgctagtctctatgactcctccctccatctcttacaaacagctactgagttcta<br>taaaatatacttccaaatttctctcagacttagcccattctcagtatggggtagtaaaaagattaagggctttaggattaaccagatctaagttcaagta<br>attacgaactataaacctttggataaattacctaacccagctggtttttctaaatgtgaaacaagaatggtatctctattataat<font color="green"><u>ATTGTTAAAATTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGATATCGAGACCATCCCGGCTAAAACGG<br>AGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTATAGTGGCGGGCGCCTGTAGACCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>ATTGTTAAAATTTAA</u></font>atgggagtaatatatctatcacagtgtcagccacattatgtttaataaactttaattaccattccctctcgcctattcccat<br>tgtttataaaggccatttttttaaattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtg<br>tgctgcacccattaactcgtcatttagcatgaggtatatctcccaatgctatccctcccccctcccccaaccccacaacagtccccagagtgtgatgttc<br>ccctttctgtgtccatgtgttctcactgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgttcttgcgatagtttactgagaatga<br>tgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	460	142	NA	intergenic
0	chr14	79346301	79346604	1000017	0	+	Ya5ac2404; RIP_Alu_chr14_078_01	GTCAAGGTTCTGGCAGGAAA	TATTCACTCCCTTTCCCCCT	SINE	Alu	Ya5	ttttaattgggttatttgtttacttgctatgaagttgtttgaattctttatatattttagatattaaccccttatcatagaatgacgcattttaagacaa<br>ggaatgaatcttgtgaaagcttaattccctgtcctaattcctcaccctttacacctccttgcactagacacactcatttacaaactctatacttctactg<br>tattcctatgactggagggtgtttatgagaaaagcaggtgagccttagagtaccagtatatcaatttttttccacagtaggttaagggattcatggaggg<br>accccccctgccccccaaattgatttgccttttgcattagtcaaggttctggcaggaaaactggtgacactctcaaatgggggtaataatat<font color="green"><u>AAGAATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATTG</u></font>acccatttacaatagtataggcagggtaagtctgttgtcagggaagccaataaaggatggagaagcacctttttacccattacctctc<br>ttaggcttgaagggggaaagggagtgaatatttattggaacaaagagccagagatgtggctgtaactgggagagggcctcccaataggatctgaaaagtt<br>cagtagtgaaatgcaagcactgcaacccgaggcctggcagggaggagaccaaagaaactgatatcccaatctcacttttcccactccctggctttctgcc<br>aatgactcccatttgatgcagtccagaaagatgggcttcctagagagcagagtagggtggaaaatggattcagagggccatgaagagtatcagagtatca<br>agaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	179	NA	intron:NRXN3:NM:004796:7/17
0	chr8	72156841	72156842	1000018	0	+	EYA1; RIP_Alu_chr8_072_01	NA	NA	SINE	Alu	Ya5	agcatcggtcctaatacagtaagagtctgacataacagtctcaaagaaaaaaagaatctgacataacatatgcaagtgttacgaattatgttggacatat<br>cttagtggtgattatgtaactgagaaatatgtggcttctgataatcaacaaagtttaagattcttgaaatcaaattttaatctttactactggtcatgta<br>ggatctaactctgaaaatcaacagccaaagtaaagcaaaatagaaatcccataaaggcaaaacacattgccatattaccaacaaacctctgtctcactat<br>tccaattatacattaaaaaataatatcctatctttattttaaaaccaatcacctattttcagacatgcaaaaatatgtattaaaaattagaac<font color="green"><u>AATAAAT<br>GTGTGTCTG</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAAATAAATGTGTGTCTG</u></font>tctgccaagttgaaaatcatttcttccattcgcagtccaagggaaactgaagtgggtggat<br>cctaaaataagaatatgacaggtgaagaacatgtatacttcaggttacatgaaagagagtgtctcattaagaggaagcaggcattgggagaggctgaaag<br>caagagacacagagagagacttgggcaacagctgcttattttagtgtgcatgacttattctgtgtgcaaacttcagggacttattttataaaaagagccc<br>caaatgttgatggtgctttacacactgaagaaaaaactctttctttacttttttaaaatttaaaatctagggttacttagacatataaaataaaggaaat<br>tcaactttttatgtctatttcag	Other	<UL><LI>Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, Vincent C, Levi-Acobas F, Cruaud C, Le Merrer M, Mathieu M, Konig R, Vigneron J, Weissenbach J, Petit C, Weil D. Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in the eyes absent homologous region (eyaHR) of EYA1. Hum Mol Genet. 1997 Dec;6(13):2247-55. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9361030">PMID: 9361030</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Brachio-oto-renal (BOR) syndrome	exon:CDS:EYA1:NM_000503:12/18	
0	chrX	49855342	49855343	1000019	0	+	CLCN5; RIP_Alu_chrX_049_01	TCCATCTTCAATTTGTTTTTTCCTTC	CGTTTTAGCCGGAATGGTCT	SINE	Alu	Ya5	ctttcttgaagccaaagaagagtttgctcataagaccctggcaatggatgtgatgaaaccccggagaaatgatcctttgttgactgtccttactcaggac<br>agtatgactgtggaagatgtagagaccataatcagtgaaaccacttacagtggcttcccagtggtggtatcccgggagtcccaaagacttgtgggctttg<br>tcctccgaagagatctcattatttcaattggtaaggatttcagaaaggggatagtggaatccactgtggaactcaataaatatgcctgaaatgggggaag<br>acagggaaggggggactggttaggagccagaaggatagagctagcacgtccatcttcaatttgttttttccttctgtttgaata<font color="green"><u>GAAAATGCTCGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATtCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTaGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAATGCTCGAAAGA</u></font>tagcacttccatcatttatttcacggagcattctcctccattgccaccatacactccacccactctaaagcttcggaacatcctc<br>gatctcagccccttcactgtgactgaccttacacccatggagatcgtagtggatattttccgaaagctgggactgcggcagtgcctggttacacacaacg<br>ggtaagaagtcttgagtgaagtcaaattgaattgtgggagaaagagaatgcagagatagaaagaagtagaaagaagtagaacccagtttaaatgaacatt<br>agtagcacttttaggacttcttgaagctctgagatgaaagtggataggtttttttaaatcataattaatgtaaagggagtttgggaaagaacatgtgtt	Other	<UL><LI>Claverie-Martin F, Gonzalez-Acosta H, Flores C, Anton-Gamero M, Garcia-Nieto V. De novo insertion of an Alu sequence in the coding region of the CLCN5 gene results in Dent's disease. Hum Genet. 2003 Nov;113(6):480-5. Epub 2003 Aug 29. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14569459">PMID: 14569459</a>.</LI></UL>	E:Insertion-specific detection:PCR	estimated sizes for PCR products, polyA length unknown	60	650	300	Dent's disease, low-molecular-weight proteinuria, hypercalciuria, nephrocalcinosis, nephrolithiasis	exon:CDS:CLCN5:NM_000084:11/12
0	chr6	141325722	141326033	1000020	0	-	Yb8NBC576; RIP_Alu_chr6_141_01	AGTCTTAATGGGCGCTGAGA	AGTGCCTCACCCAGTAGCAC	SINE	Alu	Yb8	tttgttcaacagaactgaaattgctttacttaacttttatgcaaatgtaactatatgcaataaaagaaatttaaactcccgaacatattaaatcgctcta<br>gaattttggatttttataactcttaatgaaatccataatgatatacaaaagtatatcccaagggattttaaaatttctaaatgttattgtcacttagaaa<br>atcctactttttaaaaagaccatgccttaattttctgataggatactctttttgagaaatgtctacacaataatagcatgtacactaaggtatgcaaaag<br>taaacaaataagggattattatatatgtttcaataggaacaacaaatatatttttcaaaggccaaaatttctatttataggcaatt<font color="green"><u>AAAAAGTGGATTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAGTGGATTTT</u></font>aagtttgcccactagttagttcccctggtcttcaagagtaagactacctcaatagagagctccactgggaagcc<br>acatgctctcatcactaaaattgtccaaataatgaactgatatattaatataatatgctgaaacaacaaacattcgagaaaacaagagaaatactgctga<br>tttgagacaacaaaattagaacttggatcttttcattaaataaaacattttttagatgatgttttcaacaagatttgtgtaagagagggcagtaagattg<br>ggtacaaaatcataggctaaatatctcttttgattccttgagagagagaagacaggtgtgatgtggatttcatggattttagatcattttctttcttcga<br>cattgactccaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	475	149	NA	intergenic
0	chr10	123276997	123276998	1000021	0	+	FGFR2Ya5; RIP_Alu_chr10_123_01	AATCATTCCTGTGTCGTCTAACC	AAAAACCCAGAGAGAAAGAACAG	SINE	Alu	Ya5	gagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttatccctg<br>agggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaaccaagaaa<br>agggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaatagaattacccgccaagcacgt<br>atattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgttaacaccggcggccta<font color="green"><u>GAAAACAAGGGAAGCA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAAACAAGGGAAGCA</u></font>aaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggggctt<br>cagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccacaggcc<br>cgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttggtttg<br>catttaggggtggttttccaaaagtatggtgcccagaaggccaagctggttctggtcctgttggctgcagactcccaccaagaggaaagggtagttctat<br>ctaaattgct	Other	<UL><LI>Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR, Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO.De novo alu-element insertions in FGFR2 identify a distinct pathological basis for Apert syndrome.Am J Hum Genet. 1999 Feb;64(2):446-61.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9973282">PMID: 9973282</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	590	225	Apert Syndrome	intron:FGFR2:NM:001144914:5/15
0	chr10	123276892	123276893	1000022	0	+	FGFR2Yb8; RIP_Alu_chr10_123_02	AATCATTCCTGTGTCGTCTAACC	AAAAACCCAGAGAGAAAGAACAG	SINE	Alu	Yb8	gagaataaattactttgaattttaccaaagtaatggcaacttgttccttaagagaaagggggatgggctaatttatacattggctcaatgactcactaaa<br>aatatgagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttat<br>ccctgagggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaacca<br>agaaaagggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaata<font color="green"><u>GAATTACCCGCCAAG<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAATTACCCGCCAAG</u></font>cacgtatattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgtta<br>acaccggcggcctagaaaacaagggaagcaaaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggg<br>gcttcagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccaca<br>ggcccgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttgg<br>tttgcattta	Other	<UL><LI>Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR, Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO.De novo alu-element insertions in FGFR2 identify a distinct pathological basis for Apert syndrome.Am J Hum Genet. 1999 Feb;64(2):446-61.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9973282">PMID: 9973282</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	575	225	Apert Syndrome	intron:FGFR2:NM:001144914:5/15
0	chr17	29663529	29663687	1000023	0	+	NF1; RIP_Alu_chr17_026_01	CAGATCTGCTTGATGTTGTACTAAG	TGACAGCAGCTGACTTGACTTTGC	SINE	Alu	Ya5	tctcttaatctctgaaggagtcaaatgaatatactcatcctttcctggatattttataataaattgtatttactgacaggcctgtaaataaaatctagta<br>tttttgaggcctcaggtaaaatagaattttcatattgattaggctgttccaatgaatattttttaattaaaaattaaattggtagagtgattaaaaacat<br>gttattttccttcttcaactagattacagatctgcttgatgttgtactagacagtttcatcaaaaccagtgcaacaggtggcttgggatcaataaaagct<br>gaggtgatggcagatactgctgtagctttggcttctggaaatgtgaaattggtttcaagcaaggtaatcacttttcttttgccttctgtactatagcata<br>tctgttttatcatcaggaggttttttgttttgtaattacttttaaattaaactgaacttttttgtgctaaaactttgagt<font color="green"><u>nnnnn</u></font><font color="red">GGCCGGGCGCGGTGG<br>CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT<br>ACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>nnnnn</u></font>cccatgtttttttttttaaaaaaaaaaaatcctgcttctttacaggttattggaaggatgtgcaaaataattgacaagacatgcttat<br>ctccaactcctactttagaacaacatcttatgtgggatgatattgctattttagcacgctacatgctgatgctgtccttcaacaattcccttgatgtggc<br>agctcatcttccctacctcttccacgttgttactttcttagtagccacaggtccgctctcccttagagcttccacacatggactggtcattaatatcatt<br>cactctctgtgtacttgttcacagcttcattttagtggtaagttctaggaaaggaatttgtgtttaccagttcctttctccattttacttcacctgatca<br>atatagattatcttatttatgtttgtgctctaacaccaagttgctaatttaagcctccagtaatgacatgaaatattaccaaaaagaaaata	UCSC	<UL><LI>Wallace MR, Andersen LB, Saulino AM, Gregory PE, Glover TW, Collins FS.A de novo Alu insertion results in neurofibromatosis type 1.Nature. 1991 Oct 31;353(6347):864-6.<a href="http://http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1719426">PMID: 1719426</a>.</LI></UL>	E:Insertion-specific detection:PCR	precise insertion position unknown TSD unavailable	65	800	480	Neurofibromatosis	exon:CDS:NF1:NM_001042492:42/58
0	chr11	82593539	82593836	1000024	0	-	Ya5ac2084; RIP_Alu_chr11_082_01	TCATGGAGTTGAGGCCTTTT	CACTACCTGGGAGGACCAAA	SINE	Alu	Ya5	ctactctggatcgcattgctttatttatttatatgttggtatcctgttagactgtgagcagcctgagtgctaggactccacccatcagtgtatctcagtg<br>tgtgccttcatcagctcttcagacaaataactggctcaagctgaagttattcttctaccattagtacttggttttgtcaacagtctgccagtattgtact<br>accaatatggcatagacactggccagtgggaacagaagctagtcatggagttgaggccttttgaagtatcatcgttctttaggtctggagatctaaaaaa<br>gggtctgtggcagtagggctgtgtgtgtgtgtgtgtgtgttgcacaggtagtttttctccaactcatatggaaatatttcagtatttt<font color="green"><u>AAGAACTGGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAACTGGCTC</u></font>agtatcagctttggtcctcccaggtagtgagtgcctacagaatgggattctgtctgtactgcttagtgtccctaatatggatatctcagc<br>acaactcaggtgtccaaaacaggtttaacttctatagcaaatgttaatgttattacataacacttctttttaaaacttctctgaatttttcacattacta<br>tgaatactactgcagttgaccctagaacaacatgggtttgaactgcacgtgtccacttataaacgttttttttcaatacatctcttctgtctcccctttc<br>acctcctccacttcttctgcctctgccacccctgagacagcaagaccaacccctcctctttctcctcctcctgttcagccttctcaaagtgaagatga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	497	180	NA	intergenic
0	chr12	59058255	59058559	1000025	0	-	Ya5_518; RIP_Alu_chr12_057_01	GCAGTAAAGGAGCAATTATCACAG	CCGGAATAATGTAAAATCACAGTGC	SINE	Alu	Ya5	gtaagagcaaagggtagggaaagatgaatcaataacagcatcaaactcacagatgcaacagctgaagtggcatggggctgcaaataacagagcatcctgt<br>agaaggaatatggtctagaaagtgagggctggttatcagagggagatatgaaagaagagagagtggggttctgcggggcagagagagatactgtggaaca<br>aacttaaacttttcactaatagtacaaaagtagtttattttaaattacaatggaaatttatatttgtaaattaaaatagtgctatgtaaaaatatactta<br>gaaggtcatatatgctttaagagaaaaaaaaacatattttctaggaactataaattaccggaataatgtaaaatcacagtgcttc<font color="green"><u>AAAGAAGCAAATGTC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAGCAAATGTC</u></font>tttagatttgctcatttccactttaaacatttgttttcctagaacatgtgtcctataaataatctaacacccaatataaa<br>atttggcaagaaatatagcccattaaatttatcctattgtgctttctttatctgtcacatattttaatgtggttttattaactgtgataattgctccttt<br>actgctaatgatagtatgatactgttaacaatcaacttccaaggtgatagtctttatgatctgcacctccctcagtaattgcactaaaactgtgtgcctg<br>actcttgagttaaaggacacttgggtttcttgtacttgagtcaatttggtctcctttccagatggtaaattaaggactatgctatcctcttactccaaat<br>ttcca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	548	228	NA	intergenic
0	chr12	92465516	92465821	1000026	0	+	Ya5ac2221; RIP_Alu_chr12_090_01	ACAGCGGGTAGGGAAACTCT	TGGCTACATATGGGATGTGG	SINE	Alu	Ya5	agtagattttctcctggggaaaccagtagcaatttatcttgttcttgctctactgctggcatacaggaggttgggcatttaatagacagtcatctgccag<br>taggaggtaataattgttttttagattaaaaacaaatgaaatatgaagggagttactgccatataggaggaattggagccaatgctcaagtagtcttgtc<br>tagagccaatgtaagaacttctgttggaaaactacacttttatgtatatgtatgagtttctgcatgtgcatgcatatgagtgctttagcgtcttgtagat<br>gtgtgcatgacagcgggtagggaaactctggaaaaatagccagtgaagacccaaagcaactcttattttctacactcacaagtactat<font color="green"><u>AAGAGTTGGATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTTCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTTGGATC</u></font>aatttcttgtgcttaaaattgggttttattttgtttatcttttccacatcccatatgtagccattttctaggaaaaaattac<br>actgatagcaacaaaataatttttcaaaatgtatataagaaacagtgcaatgtaagacatgtagaagagagccagaatatgccttggtggattgatgaga<br>atgctaagcaacgaaagacattcatgctgcaatctatacaactaagcagcctgaaacctcctccattattcaagtttgaattcagaaagaagacaatggc<br>cttattcagctccagtcaatcctagtgttatgcattgaattatttccccctaaaagttgttgacatgctaactcccaatacctgcaaatgtaactttact<br>tgaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	472	154	NA	intergenic
0	chr14	39017984	39018283	1000027	0	+	Ya5ac2370; RIP_Alu_chr14_038_01	ATTGCTCTAGCCACGCACTT	AAAGAAACTGACGGGGTCCT	SINE	Alu	Ya5	gtatctaagacatactttatagaggctacaatttgaataacaggaacaaagaagaaataactcctttgtccaccttcaaaacttttgatacactgcaaga<br>gcctgtaatttgtaaaccatttaatctcacagggggaacctaggattctcagagtccgctccatcagggcaactatttacagcagactttcctcagatat<br>acttgttcactttgtgctactccctttgatgtaggtataattaagctgattgcagccccagttggccactatgttcaaagaaaaaacccagtagcaattc<br>aaaatgattgctctagccacgcacttttctctattccttgcgtaccttgaggatggttgtatagccccaaggcacttgctgtt<font color="green"><u>AATATTAGGGAAGGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AATATTAGGGAAGGTTT</u></font>tattatttcgtaaatctccatcagccccttcctctctcttcgtagtggctttttctaggaccccgtcagtttcttttgacagt<br>catcaagttgcttaggatgcagaaaagcctgcctgccatcattccccacatctgttcttgtaactacattctcttccacatgtgtttcctctctgaggca<br>gtcgagttgctgaagctcagtgagctgaggtggattctaaattacgtccagacctataagtcaactaaataaaggaaatgtaagggggaagaaagtaaat<br>cttcaattcttcttagtaatttttaacttcagagaaataaaagaacacattgtgataagtttgacatcactagatgaaaaaaggccataagatatatgtt<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	487	170	NA	intergenic
0	chr16	26383411	26383732	1000028	0	+	Ya5_464; RIP_Alu_chr16_026_01	TTGGTCAATATCGCTCATGG	TGGGAGTTAGGAAAAACTTGG	SINE	Alu	Ya5	ggaggggagggaggaaggagacaaaagacaggaagtggggagagagagaggagaggagaggaaagaggggaaaagatgaggaaaggagagagagagaaaa<br>aataaatagctttttttgtttgtataatctgacatcttgtagacagttttttagagagatcaattctgtccctttgagttttattttaaaaattagagaa<br>ataggctatttggctagtctgcaagacttgtcatagcctctgggtttactgggcgattggcaggccatagtgtaaataatgacttagaactactggttca<br>acttctcttcaaaaataaggaactaggatccaaggtgaggcccagtgacatacagtgacttggtcaatatcgctcatgggaaggcagtc<font color="green"><u>AAAGCTGTAGG<br></u></font><font color="red">TAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGCTGTAGG</u></font>taggaccaagtttttcctaactcccagttctcttcatcacatgatagaatcaggagagagctcttct<br>cctctgtcacccatcagtcacctctgaccttgctatttattcccaagagtcagagaggcagagtgtaccctctgccttcggagatatcaaagtcatcaaa<br>cctggacaagtgaaagctttggctgaccaggggcaggggaggttgggtgtatctggctgcttacaattcagaagttgacatcagctcagctgcttgcatg<br>ctgtgctaaatctcaacgtgtatagactgaaaatcacccagttactttgcgaaaacagcagtttaataagattaggaggagttgagaacacttgttacgt<br>tcaaggcaataaaatgaaaagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	57	400	67	NA	intergenic
0	chr19	31017350	31017650	1000029	0	+	Ya5NBC349; RIP_Alu_chr19_035_01	TCAAGAACTGTGGGCCAAAT	GGATGTTGTCACAGCAGCAT	SINE	Alu	Ya5	tctcaccaaggccaggttcttaggtgaccctgctcagcgacacgaatggtctctggggtgggctccagcccacagtccctgtcccacagagaagagacag<br>gtgtgcagagcccaaagagacatgtcacacctgatgtcttgtcccaggtcaattctgtgaatcccaaaccttgcccgctgcatccagggttgcagtctct<br>agcctggggactgagagtacctgcccacagccagcccatagccaccccttggggccttggcaagatgtggcggtctgcggatgacaggggatgttgtcac<br>agcagcatcacatggtgccagagggcagagaccccatgggtggcctaatccccagcagggagtttcacagactccaccaacaatt<font color="green"><u>AAGAACAGGTTCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAACGGGTTCAGG</u></font>gcttgggaaaaccagaaacacatttggcccacagttcttgatcttgaagccctggtatattttaaggaaaatgtaatccatgtg<br>tttctgattcattttcacttaactcatcaaaatgttgctttagagaaggtatttgaaatcctagtgtcttatatttctccctttttctttttttgagacg<br>gattttcactctgtcacccaggctggagtgcagtggtgtgaactcggctcgctgcagcctccgcctcctgggttcaagcgattctcttatctcagcctcc<br>cgaatagccgggactacaggtgcctgccaccacacctggctaatttttgtattcttagtagagatggggtttcaccatattggccaggttggtctcgaac<br>t	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	469	53	NA	intron:ZNF536:NM:014717:2/5
0	chr20	32335140	32335449	1000030	0	+	Ya5ac2698; RIP_Alu_chr20_031_01	GGTGTCATTTCTGCCATCACTAT	CTAGCAAAACTCACAGTCAAGCA	SINE	Alu	Ya5	tgaagttgagatgcctgccaacctttaaacggaggcagtgacaaagtagacaatgtagatttccaagtccggaggccagagcagaggacaaggctggagg<br>catctggggaagcttccagagtcctcagccgaaaacacggttctggagcaaagacaccctggatagggggctcatagaaagactaaaggatccctcataa<br>aggaggctgggcatatctcaggatgccaggtcaaggggtcagattttcaactggcttccttttctttccttatccctttagaacattatcttcattcatt<br>gtataggtgtcatttctgccatcactatgaaagcattcaccccagacccataggacatatagactgaaacaggcatcttctggcataaa<font color="green"><u>ACAGTCATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GGACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAC</font><font color="green"><u>ACAGTCATTTT</u></font>tctcactgcttgactgtgagttttgctagtagaaaatattcccctcaccatctcttacctttttttttttttttttgag<br>acaaggtcttactgtcgctcaggctggccttggctcactgcaacctccatctgccaggttcaagtgattctcctgcctcagcctcctgagtagctgggac<br>tacagacacccgccaccatgcccagctaatttttgtatttttattggagatggggtttcactgttggccaggctggtctcgaactcctgacctcaagtga<br>tccgcctgtcttggcctcccaaagtgctggaattacaggcatgagccaccgtgccacaccagatattcttcttgacctaagatacttgtggacttcatgt<br>ggacatgtgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	447	127	NA	intron:ZNF341:NM:032819:3/15
0	chr10	35593223	35593539	1000031	0	-	Ya5_541;pAlu10-35743364; RIP_Alu_chr10_035_01	GGATTGGGAAAGGTGTTGAA	TGGCTGAGAAAACCTGCAAT	SINE	Alu	Ya5	catgacacttgtatattaggctcctaaatactgtgcaacacggcaacagtgatgagaatcactactcttagaccacacttgaattagtgtctcttccatc<br>cacccacgttttttggctcttcttcctctgatctcccctgccttgaggctcagcactccccctaacaccctagtggttctcaacctgggcaattatgccc<br>ccaggagacatttttggttgttgcaactaggggatgccactggcatgtagtgggtagaggctagggattctgctaaacatcctacaaggcacaggacagc<br>cccccaaaacaaaaatgatctagctccacatgccaatagtactgtggctgagaaaacctgcaatatgctaaccaaaccacttttaat<font color="green"><u>TAAAAGGAGAAAA<br></u></font><font color="red">AAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAAAA<br>TAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAAGGAGAAAA</u></font>aagccttttcaagatcttacaacggctcttattagattataaattgtaacctcctcagccttactttcaa<br>cacctttcccaatccatttctaacctacctgtcacctgaactgagcaaacctatgctgagctcccccatgtgcaggaggtgcaaagctactgaaagacga<br>agaggggttggtgctttccagaagcccattcacgggtgcaggagacggagaaactggagcatgtggctagcacccagcaggtatcaggaatggtctttcc<br>tttcttcctaattagctctaattccaggctgactgtgatgggtggataaagagtggtggatcttagtgttttccccacatcgtaatctgtgctcttgttt<br>gtcttttaatctattag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	471	141	NA	intergenic
0	chr10	55958255	55958435	1000032	0	-	Ya5ac1925; RIP_Alu_chr10_055_01	TCGGGGAAAGAGGAAAAGTT	GCAGGAATCCTCTGCTTCAC	SINE	Alu	Ya5	tagatctgatttgaattttatttctcttttcattgaatcactttgttttcatcatgcaaataatacatatttttactggcttcacagctgctggtaaaaa<br>ctaatgatatatgatctgaatgtaaaatgtaagcttatttcattattatacaattttgcttttttcatcctcctcaccacctatatattgtgtgtgtttg<br>ggtgtgttcatcggggaaagaggaaaagttgtagaatttatgacttttcatagcatttttatgtcctggatatgacatgctggttattggctcacgcctg<br>taatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaacggtgaaaccccgtctctactaaa<font color="green"><u>AATA<br></u></font><font color="red">CAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AATA</u></font>attagatattaaaga<br>aagatggagagatacaagaaagagagaaaaaaatctgttcaaaatgccttgcatgtatgaactgctctgagcctgtaagagtgaagcagaggattcctgc<br>ttaaatcatttcaaggtcattgggttggaagcccatatggaccaattagttttaaacagtgaaaaaacaatgttttccaggcgtagactctacctcttgc<br>cctggtcagctgtctccagaaagcctgatgtgtgtcacaggggtaactcctaaaagaacatccatcgctcggcacaaattaatcacaactgctggatgca<br>gaaagacctcatccatactgatggtattagcagcatgcctggttatgtgagatggatacataatcccagacaggaccaaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	490	195	NA	intron:PCDH15:NM:001142768:9/33
0	chr10	55018745	55018970	1000033	0	-	Ya5ac1926; RIP_Alu_chr10_054_01	TTTTGTGAAGAAGCCCTGGT	GCAGAATAAATGCTGCAACG	SINE	Alu	Ya5	caacccattaaatcagccttactaattgcattatgtctggacatatttatatatcacctatcttcactaggcatcgtagagtacaactttatataaagta<br>cctttctatatactatttaatgctttcaagtcctggattcagaattgtcttataccaaaatcagagccacactttcttatttcacatttgtttctaaaag<br>ttttccactatgtgttctacttttcatttattcatcttcttgttacctgattatacttttaggtacttccttactttctggcacaataaaaagttccatg<br>tttatcttgtattttcttctcccttgtccctgaatgagtcattttgtgaagaagccctggtttcttttaacatcgagtgacatttat<font color="green"><u>AAAACAAGATCTG<br></u></font><font color="red">GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGG<br>CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT<br>CAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACAAGATCTG</u></font>agtgctagttgtaggtcttttcagtggacagatttagtaaatacacatatttgtccatgaa<br>cacagatatacccttatatctgtctctttgtctatcaaccatctatccatctttctctattcatctatctatcatacaactaggagttcactttgatacc<br>tctaaatttgattgaacgttgcagcatttattctgccttgttgatttctacatttgtaaggcccttctttgaaagtgagaaacctggcaactaagatccc<br>actattctcaatacatttatacttactggctcagtaccagtgtatgtacttacacttctagtttgaattgcccaaagttcatatcggacacactgtcccc<br>caatgatctccacctggtgggtctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	495	256	NA	intergenic
0	chr10	26767958	26768247	1000034	0	+	Ya5ac1939;pAlu10-26918096; RIP_Alu_chr10_026_01	GCCAAAAAGGAAATCACAATG	GTCTCCTATCCCAGCCATGA	SINE	Alu	Ya5	aggaaaagaaagaggcacttgggctggagatgtgctttgggggttggcagcatatgtatggtatttaaagccctaagagcaccaagggagtgagtgtaga<br>ccaaggctgaagagaaatgaggtcaggaaggatgaggaggaacccacagagaaggctggaaggagaagctggtaaggtagatagggatggagccagaatc<br>tctggggcctgaatcttacacaattttgggaggctcccttttaaaaagaagggatttttttctacttggggtgggagatgaagtctccctttaaaaaaat<br>acaaaattgtcaatgaaaaattaaggacaagagggaatatttatttagagccaaaaaggaaatcacaatgaatgaccaattttt<font color="green"><u>AAAAATTGACATATAT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG<br>AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTGAC<br>ATATAT</u></font>aacaaacatgtacatgtacccctgaacctaaaataattttttaaataaaataaagaaaaatatttaaaatcatggctgggataggagacagcaa<br>taatttataaagtgtataatttataaagtgtatttgttattaatcactagagatcactgaacccaaaaggacttaactgtgatactttactgtgaaaaaa<br>tagttttcactgcctaaaatgaaactctttattttacagcattattagaatatgcaaacatttgaaaaaaaacaataaaaataaaaattgacacgtaagt<br>gtatatatctaaaaagcaacattgtaatctttatgatgattaaataacttgctgatgtatttttgctacgcttttggctgcatattcttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	446	140	NA	intron:APBB1IP:NM:019043:2/15
0	chr10	20667260	20667565	1000035	0	+	Ya5ac1952; RIP_Alu_chr10_020_01	AGCCCCAGATAAACCCACTT	CAAATTTCACATACACAATGCAA	SINE	Alu	Ya5	atagatatacaattttttgtttcaatatgaaatcatagtgtaatcttttaaaagacattttaagtggcaaccatatatgcatctatgaccaactttaccc<br>aagtacaggaaatggcatatggtgacgctatctggccagcagcttttgtgaagcactctagattgtgtaaagtactacaacctttgagaagttaacatgc<br>aaaaaatacgtgcatctcgtgcatctcagtagtgtggccaagtgtcgtcgtttacccaggattgatgaggttctcagaacacgggacttttagcacaact<br>aggaagccccagataaacccacttgagttggtctctgtaatcagaatcaattcagtatgattggtcaaaggtacaaacttttagtt<font color="green"><u>AAAAGATTAGTAAG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGATTAGTAAG</u></font>ttctggggatgtaatgtatatcatgacaactccagttagtaacattgcattgtgtatttgaaatttgtaacaagagtgta<br>tatatatatatttttttgtttgtttgtttgtttgagacggagtctcaccctgtctcccaggctgaagtgcaatggcgccatatcgactcactgcaacctc<br>cacctcctgggttgaagtgattctcctgcctcggcctcccgagtagctgggattacaggcgcccaccatcatgcccggctaatttctgtatttttagtag<br>agacagggtttcgccatgttggccaggctggtcttgaactcctgacctcaagtcatccgcctgccttggcctcccaaagtgttgggattacaagtgtgag<br>ctacca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	483	163	NA	intergenic
0	chr10	50278016	50278334	1000036	0	+	Ya5ac1960; RIP_Alu_chr10_049_01	TGAGATGTGCTGGAGTGTGAG	CAAAAAGGTAAAAAGCAACAGG	SINE	Alu	Ya5	gaaaggaccagggtgcaccccttactacacacagccctgtttccaccatgtcaggccccagagcccagccccctccaggaatgagtcctgcctggacaac<br>cttccaggcctacagttataaggacaggaccacctctatcaccaagtgggaagctgaggagaagcaagtcctccacctcctgcccctttggcacaaaaag<br>ccacttagaggccacatttctcacatgcaaaggaccagcatgcacagctgtctgtccagggtcccatagtcccacatggcagccatgagctccaggtggc<br>tatcaagtcccaaaatgtgatgaatccaaaatgagatgtgctggagtgtgagatcacaccagatgataaagccacaccttagcataaaaaaagaa<font color="green"><u>ATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATCAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAATATGAC</font><font color="green"><u>ATATC</u></font>tcattcatcatctttatttgttgatactgttggaatgatattccagatacagtgggttaagtaaaaatattaaaat<br>taattttacctgttgctttttacctttttgaatgtgactactaaaaaaaaaaatggtcagatcacctgtatggctgacatatttctagggggcatcatga<br>aaagggccttcacttgtctgagcagctgggctgccagtggtgaaggggcaccccaggaaggatgagccctgcacatgagaaggtgcccctgcagctgccc<br>atgccaggaacggcagtcactcagcacagtgaaagtacctcccacagccccaagaggtaagaggaaccttcattccaatgttagagaagagtcaggagtt<br>cagaagacccactttataa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	499	182	NA	intron:C10orf72:NM:001031746:4/8
0	chr10	57702048	57702374	1000037	0	-	Ya5ac1972;Ya5-MLS07; RIP_Alu_chr10_057_01	TTGAGTGGAAGGCTTTGTCA	TGACAGTATGGGCGTAGGGT	SINE	Alu	Ya5	acttacattaacttgttcgagattttaacttaaaaacttttctgaggcttgagtttatgtgaatttagttttactaaactttttggaggaggctatcttc<br>agaatagcttcttctacctcacatacttcctcttctgtggttttctcctggctctgatgtcctgcctgccccactccctacccacactcttttgatcttt<br>acctccattctccccattatgctcaatttgtgtaccactctctttgtttttcctccgtgtagtgtggaccttatctcataaaggtctttgagtggaaggc<br>tttgtcaattttggctttaataaaataaataattcaaaaaataaaaaacaaaaaatcccccacaaagattggccaacctacattaat<font color="green"><u>AACCATGAAATTA<br></u></font><font color="red">GAATAAGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGG<br>CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACCATGAAATTA</u></font>gaataagtcaaggatcagtttgctcagaccctacgcccatactgtcagtcttttctgact<br>aaggcatttttagataacaaaaatagtaaggacatgtagaacaaatcattttacacattcatgaattatcagtcatttgttaaactaatggacagctact<br>aaatttgaaaactacaaactatagcagaccactacttttaaattcaaatatttcttgcattaaaaagaaagaaaaatctattgaattagaaaaaaaatgt<br>tagattgaggttcttcttttgtaattgaataattttaattagataatgtttctaagtaaaaactttaagtgtgtttgctgatttggtattactttaaaag<br>tacagaaggaaaagtacagaaggaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	167	NA	intergenic
0	chr10	66268800	66269092	1000038	0	-	Ya5ac1975; RIP_Alu_chr10_065_01	GCTGCTTAGCATTCTTCCCA	TGGATAATTTCTGTTCCTACTTTCG	SINE	Alu	Ya5	taaccagttaaaatgaaaccagagaatgctatactaaataatatagctttgataacatttaatataattttttgttagcttatcaatcaaaggttttaga<br>caaccacattatcaacatattagttgtttctttgaatttgccaggaaacttgaattttccttgaccacatgctgaaataatttctgttcatggaaattag<br>ttggctttagatgttgtttggttgtaaaattatggtttaccattatttttgtttgtttatagttaattagcattttcattagctgcttagcattcttccc<br>actacagaagtgtttctgtaaattcttcaaaacaagcaactaagaaagagaagaatgatatttcaacaaatacatatacccttt<font color="green"><u>AAAACTGTATAAAACG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAACTG<br>TATAAAACG</u></font>aaagtaggaacagaaattatccaagttaaaaaacagatgattcatctggacactgagatatatgattacatttattgaaaacacttcaaaa<br>aaaagtacaacttattgaacaaagttattgcaaggtcacttattactggagataagatcagcgttaaaacctacaataaaatctaaatttaaagacttcc<br>taaactggggtttctacaattttccttaatgatttttttaaatgtaaaactcttattttctaacttacatttctcttgttgcaattattttggagtcaga<br>tttagaatatattaaaatatttagtcgtagcaactttttttcagaggtcttatgtttacatctaaactggatctgaagagggttttgtgtgtt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	451	142	NA	intergenic
0	chr10	70272111	70272418	1000039	0	+	Ya5ac1980; RIP_Alu_chr10_069_01	TACACCCCAAGACACTGGGT	TGCAACTATCTTCATATCCAGGAG	SINE	Alu	Ya5	tcaagcaattctcctgcctcagcctccttagtagctgggattacaggtgtgcgccaccaagcctggataatttttgtatttttagtagagacggggcttc<br>accatattggctaggcttacacacgtttaattttgattctttgtatacatgagcaataaactgtgtgaggaagaattcattgcagaggcagggcacagtg<br>gctcatgccagtaatcaaagcactttgggaggccaagacaggtgggtcagacagcttgagcccaaaagtttgagaccagccttggcaacatagcaagacc<br>ttgtctctccaaatatttaagacaccctgtcacaaataaataaataaatacataaatacataaattagtctaatagaaactaaatt<font color="green"><u>AAAGATAAATGATA<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGATAAATGATA</u></font>attcactcctggatatgaagatagttgcaatttttctatttcaaagtacagacttcctcactattaaaaatgttggtt<br>ggggctggaagtggtggctcatgcctataatcccagcactttgggaggctgaggcggatggatcaactgaggtcaggagttcgagaccagcctgaccaac<br>atagtgaaaccccatctctactaaacatacaaaaaattagctgggcgtggtggcgggtgcccgtaatcccagccactagggaggctgaggcaggagaatt<br>gcttgaacctgggaggcggagtttgcagcgagttgagattgcaccattgcactccagcctaggccacaagagagagactccgtctgataaacaaaacaaa<br>acaaaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	1130	808	NA	intron:SLC25A16:NM:152707:2/9
0	chr10	71610175	71610176	1000040	0	+	Ya5ac1986;pAlu10-71502576;1104685137744; RIP_Alu_chr10_071_01	AGCAAAAGGCAGATTCTGGA;NA	AGGCAGTTTAACGTGTGGCT;NA	SINE	Alu	Ya5	gaacacatagtgacggtgacagacattagctggtggctgccctggagccataaaactcccactgggtgagctggaggtggagggaggcgctgatcacttt<br>ggttctcaactacagcaaaggcagacgagatccaaatgtccatggatgagatctaaatgtccacatttgtaaaatgaatttgtgcattaactcattaaat<br>cactgagtttggaactctaggtaagtttagactgtgcgacacagtacgatacagggcaaaaggcagattctggactccacaagatctgggttcaaatccc<br>agctctggcatcaagaagcttcaggaagttgggttctttcaaagcctcggccctgtctctagtgggatgaggataacaatcctctt<font color="green"><u>AAGAGACATCAGGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AGACATCAGGA</u></font>gaggacctggagccacacgttaaactgcctggcatggggtgacactcgagaaagagggtttcttaccccatggcacatgtctaatgcag<br>gggccttccagcggcctcctgcgtctggaggaagccacctactgagaggtctctgccagcctgctcagggtactgcttttcttagtgctgtcttttacca<br>atgggcaaagggcgggctgttgtccttgtgatgctgaggggggctgaggcagatcaggttccctgggaagctgactgtcagccagcagactctacataca<br>caccattgaaaggggaggggaagagagagaagggaaaggcaacagaccgggcaaaggaagatgatgagctgtgccaactctcagtgatggcctcagc	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	487;NA	176;NA	NA;NA	intron:COL13A1:NM:001130103:3/40
0	chr10	74798386	74798683	1000041	0	-	20268;Ya5ac1988; RIP_Alu_chr10_074_01	TGGCAAGTCATCTCTGTCTTTT	TTCCATTTCTCTGATCTACCCAA	SINE	Alu	Ya5	acaaacaaacccataaaacaaaaaaggcttttttttttttaagaggcagggtcttgctctgtcatctaggcctaagtccagtggcatgatcatagctcac<br>tgctccttccaactcctgggcagaagtgatcttcctacctcagtctcccgagtagctgggaatacaggtgctcaccaccatgcttggataatttttaatt<br>ttttattttgtagagacagggtttcactatattgcctaggctggtctcaaactcccgggctcaagtgatcctcccagagtattggtattacaggcgcgag<br>ccattgcatccagccaaaaaaggctttacttatgttactgacaatctgttaacttttggcaagtcatctctgtcttttccactatt<font color="green"><u>AAAAAGCAAATAAA<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGCAAATAAA</u></font>aaccctaagaatttactacagcttgtaaatgaaaaagctaataattttgggtagatcagagaaatggaatttgaagtttttgaaatgt<br>aaacattcagttttgtgctctgaaaagatagttaagtgaactcataaagtctagttaaagtaatataaataatgacctatgcaaataaacaataatctgt<br>ttagagtggtagaaaagcttttttgattctggtgggaaagtgattttcatttttttactctgaagtgatgatttcctacaatacggtatttatgatatca<br>tgaatgtaacatgatatatatgtatatgtgtgtatttatttatttattttattttactttattttctttcggagacagggtctcactctgtcgcccag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	425	113	NA	intron:P4HA1:NM:000917:9/15
0	chr10	85601517	85601821	1000042	0	-	Ya5ac1997; RIP_Alu_chr10_085_01	GTTTGTGCTTCAGTGGCCTT	CAGGTGGCATTACCACTCCT	SINE	Alu	Ya5	cagagtgtaaaatctagtgttcttcattctactgtaccacctgccatagcctggggtggggtcctgctacaagggttcccactggtagtaagatgtcctg<br>gagtacatcaggactgggtcatttctgcgtactctaaaactgcctttttaggtttccctcatagggccattttccccttaatattaaagtgtgtcagttt<br>agcctctaggaaggcagtggttgaattacaagtacaaggctatccctcctcataagctcggactcatttagcttgtgtttgtgcttcagtggcctttata<br>cactattgaacttcatagcaaattcatggagagtaggggaaaatatttttatcctgtgacaatctgatagaatggaatgtattt<font color="green"><u>AAATAAAATCAGCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGCCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAAA<br>ATAAA</font><font color="green"><u>AAATAAAATCAGCATC</u></font>caccttacctttggtaggagtggtaatgccacctggaaggcagggttgatgggaagctctcaggcagcatgctcatact<br>ctctggccttggcatttgctcactgggtttcagggggagctcatctaggttccccaattctaacattgtgtactttcttatttgaaattctgataggttt<br>tcagcattaaaacaattcccagccttttctaatttggaaaattctttcattcatgctacctcaggaatcattattatctttttataggtaactaaattca<br>gaggggtcagatggcttcctcaaggtcatgctgctaagatatgagagctgaagtttttttattttatgttcactgctcttttataacatacatttatgga<br>tttga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	480	159	NA	intergenic
0	chr11	12943743	12944009	1000043	0	-	Ya5ac2013;812; RIP_Alu_chr11_012_01	TGGCAGATTCTGACTGGCTA	CACGTAAGGTGAAAAGGGGA	SINE	Alu	Ya5	ccacctcccaggttcagtggattctcccgcctcagcctcctgagtagctgagattacaggcatgtgccaccacgcccaactaatttctgtatttctagta<br>gtaacagggttttgccttggtacccaggctggtctcaaactcctggcctcaagttatctgcccacctcagccactctaagtgctgagattacgggtgtga<br>ggcaccgtattgctccagatttggcagattctgactggctaatttttataccttgacaggcactaaccactaagacctgagtcatcatatactttaaaat<br>aagtatctacatttaaatttcctttttgaattggttattaggaaaatgtccaactccttaggcaaaacttcctactttctgtctacaaat<font color="green"><u>AAAGAGAACC<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAACC</u></font>atgtactccacattccccttttc<br>accttacgtgccaagaaattcaaagctaaattcagagttcaactacaataattaacttgtctcaggtgcttctaatagctactaacagtcagggtacagc<br>tccttttactggtttccaatctgctttaacttgtacttatccggttttatgttacccataaatgtagtgagctttcctcacattctgcattttggatttt<br>atggggtataaatcataaacaaacaaaaatacccaggtgtgcatttttctcacattcaaaggtttaacatttggctccacaaaagagcagctcagcagga<br>aatcatgcatgtctttccctaaatgagatcagcatctgaactcccaaggctgaagaggcccctgggt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	489	212	NA	intron:TEAD1:NM:021961:10/13
0	chr11	16223174	16223478	1000044	0	-	Ya5ac2019; RIP_Alu_chr11_016_01	AATGGGAAAAATCGGAATGA	TGTTCAAATGCTCCTTATTTGC	SINE	Alu	Ya5	ttctactagtcttcctttacaataaaattcattatgtcttcactatgtgtatattaataacatggccttagaatcttcagaagcaaatgaaaatttttca<br>ttggtttatgttttctttgtgtgtattttcatcgtataagagttgaacatgtgcttaatataaaaattaaaattcataatagtgctgtaaaatttagata<br>ttttaatactctcattttttacatgggcatttttctgttatttagttaattagtagtgaaagtataagtttttcacttctaaaatgggaaaaatcggaat<br>gatcttcatatatccttaattgggagtcacttttcatgaaaaataaatttattatttctatgaattttaaattaaaaatctctctt<font color="green"><u>AAAAATACTTTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA<br>AAAAA</font><font color="green"><u>AAAAATACTTTGCA</u></font>aataaggagcatttgaacaaactttatgaaaccaagattattagaacctatacattgttaggtttactttaatgagttata<br>tctatctatatatagaatatataatatatacatttatatatttgtttattatgagtttctacatattttaaatagtgatgaattgagcctaattattcta<br>aagaatagtgccattcatatttcagcttgccagctacataaatttattccaggaaatttttatgacatttaaaaatcaactatagggttctatttatgta<br>atattaccttgtcagaaactgacattaaatgagaacaagttgtgattgtgtattcatatatcctggcttacctggtattgtcctggtttctatacctgtg<br>ttctt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	456	137	NA	intron:SOX6:NM:017508:4/15
0	chr11	19555256	19555551	1000045	0	-	Ya5ac2035; RIP_Alu_chr11_019_01	ATGGGGTGACAAGTGCAAAT	CAGTCATTGTCCTCCTGGAAA	SINE	Alu	Ya5	tgagtaggtgctcaacatgtgttcaccaaagctgttggacccatgattacaaccatgcactgaagtctgcactgtgggtacagcaggggacaaactggat<br>caggtcccactagatcaggtccgtgccctctgagatcccacagtctaatgggggagacaagcaataaacaaataagcaaataaacacgatgctaccaggg<br>gttggccaacactctgcaggcactaagcagagagatgcagtaaggagtaactggaatgataagcaaggtggcctatgacatggggctgtaaaaatggaga<br>cccaaatgaagaggagccacaagggtggcatggggtgacaagtgcaaatgtcctgagataaaacaattcagtgtgtctgtggat<font color="green"><u>AAGATAGTTCCCAGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>TAGTTCCCAGAG</u></font>gggagagagagagagacagacagacagaaacagagggggtgggggtagagaaagtgcacgtctcagagaaggtttcagtatgtgatat<br>ttccaggaggacaatgactgaaaagacagggagaacctggtttcattggggtttcacccagccctgcaggaggatgccagagggaggaaaatgcccagga<br>acacacatgcccaggacatgtgtggacatggtcagctgatggcctttgtaggagggagagagaattgtttacaccaatgtttgtcagccttgaagaaggg<br>ggtggatataattttgaccccaagaacatttcacaatgactgcagatatttttggtcatctcagctggggatggggagttgtcgctaatggcatct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	179	NA	intron:NAV2:NM:001111018:1/38
0	chr11	39805128	39805450	1000046	0	-	Ya5ac2045;pAlu11-39844195;5052; RIP_Alu_chr11_039_01	GCCACTTATCCGTTTCAGAAGAT	CTATGGCTTTTCCTGAACTTTCC	SINE	Alu	Ya5	tgtgccattgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaataaataaatagaaagtttgaattacttccttaattccccaat<br>gactcaaccccaacactttgcaggctacttacatatacagttgtaagaaggagattgctcttttcacatatgtatacatgtatatgtatgcatataagta<br>tgccttcatttgtaactcaatatcctaaaggatgaggattgctagaaattatatgacactaaattattcaaagccacttatccgtttcagaagatatata<br>atggaagtctgtattcaagatgtgtaaaaatatttcactgaaatttttctttatggacaaattggtagataccagaactctgttaaaa<font color="green"><u>ATATTACAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAACAAACAAAAAAAAAAAAT</font><font color="green"><u>ATATTACAAATT</u></font>gtacaaatcgtactttaaaatctttcctgtaatttttttcagccatgttatatgttcaagcaatt<br>taattgctcctttttataaagatttatgctttttgtgttttcaaaaagggaaagttcaggaaaagccatagttgaatgtagcatccaataaacatgttcc<br>ttataaatgagataatgaatctttgagaactgagggaactactctcacttatttataactctacttaaattccaagattcctaaagagaaaaatcaaaga<br>ttgatcagactagccttagaaaacattaccacgtattctgtagaagaaatagtgttgtgattttaatgagtaccacacaggctaagggtagatttgcctt<br>attcttcttcctaaaatcttaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	599	264	NA	intergenic
0	chr11	25564487	25564813	1000047	0	+	Ya5ac2050; RIP_Alu_chr11_025_01	GTGCCAATGTATGCAACAGG	GGGCGTCCTCTCTTATTTCC	SINE	Alu	Ya5	ttacttctgaagctatatcatccaccttacttcctaggaatacttcctgccagtgtttttcacaaatgttattattgtgttttgttgaaaacaataacaa<br>acatgagtttacctggattgtgcaacaaaatgtgaaaaataatttattttctgatcatgctaaatccacgatttggcattttatatcataaacatagaac<br>aaaacaacatccaattatgtttccttttgaaaccttcagaactactacattttcagaatgccatctttattcagtattaattacacccctaaaatcaacg<br>ggatagaaaagtgagtgccaatgtatgcaacaggaacaaaagtctcatttgcacaggaaatgtccatctcttccctagcatggctt<font color="green"><u>AAAACCATGGATGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAACAAAAACAAAAAAACAAAAAAA</font><font color="green"><u>AAAACCATGGATGT</u></font>taccaaatcagttggaaataagagaggacgcccataagaagggactgttaatgttgcag<br>gaatatgaccttgaaagccctgaaaggaaagagatgtgccactcctagagtattgcttgctacctggcatgggacctgaaaaaggggtgagatgactgct<br>ctgagacccagtatgaatgattgcatgtgcacagcgcagaaaacggtcactgggattcctaccacccttgggtactgtagatcagaggcagcactctgtt<br>cagaactcagataagcaagaaccaacacataggccctcataatgtagctcaagcccatgggtcagaagtggactatttatgtcccagaaactttatggaa<br>tactgtggctgatactatgagggaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	460	341	NA	intergenic
0	chr11	89932522	89932852	1000048	0	+	Ya5ac2095;B65; RIP_Alu_chr11_089_01	CTAAAAGGGACACCAGCCCT	TGAGTTATTTCCCCTCTCCG	SINE	Alu	Ya5	ggcaagccatccaacaccaccagattaagttgttaagatacctgggcagtagggaagcagtcagggataattaacaacaacaacaaaaaacctatcaaac<br>aatcaaaacaaatgaaacagaaaaccctattaacaaaacctaaaaacaagctgggcttaatagcttgcatttcaaaactgaggccatggaattatactgg<br>tgaaaacaaagtaaataacaaatatgaatgccaagtcaaaataatttgccataaaagatgaacaacaaaaaaaaaccctgttaatgttcaaatagataat<br>ttaaaagtacctgactgctaaaaacaaaatttacagagtacatacccatatatcctaaaagggacaccagccctcataaatgagcttttaag<font color="green"><u>AGTTTACT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AATAAATAAATAAAAAAAATAAAAAAAAAAA</font><font color="green"><u>AGTTTACT</u></font>tactgtgagtatacgcatgacataaattttcaggctgaggaataactgattaaaaaaaaaa<br>aaaaaattgggagttcggagaggggaaataactcaaagtccctttaaaatatttgcaagaactctttaagtttctctacactttgatggttgaataattt<br>tctgaagaaaattcttaattaaatccttgcataaaatataaattagaataaagtaaaatcattacagtcctttgccagtatagttacaccaagaagttac<br>atcttcaacctataaacatttgttgattcctaatcatatcttaattgtttataaattactggcttaaattattaccaaaaaagtaggacaagtcttaaga<br>ccttgaagaattccactaaaaacagatggta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	481	142	NA	intergenic
0	chr11	92976352	92976684	1000049	0	+	Ya5ac2102; RIP_Alu_chr11_092_01	CCTGCTATTCCTTTCCTTTAGTG	GTGACTTCTAGCCACAAAAATGG	SINE	Alu	Ya5	tttgtctttttttggattattttttatcattctatttttccttctactagtttagaatatatacctgctattcctttcctttagtggttccttaaattat<br>aacattatgcttaagttatcaaatccccaaattaatcaatactttgctgcaccatggacaatgttagaaccttagaacatttaactcaattttctcaccc<br>aatcaatttacatgttattattgtcatgtattttaatgtatgagtactatttgaatatactcgtttatcactttatttgttcttaatttcttcttgcttc<br>tcagaccttccatttgatattgcttctcttctgcctgaagtatattgtttagaatttcctttcatgagagtctggttgtgtt<font color="green"><u>AAACACTAACAGATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACACTAACAGATTTTC</u></font>ttagttaaaaatatctgttttctcttcattttaaaaaccaaatattaac<br>tgggtataatatctagattggaagttattttcaacacattgaagaaattctgtctcccatttttgtggctagaagtcaccttttggtccaattgtttctc<br>ttttaaaggtaatactttatctctgtctgcttttaagattttttttcctatctctggtactccattgtttcagtgtgatttgtctatgatgaaatttttt<br>ttatctttctcgagattgtttatgcttcttgcaagtgtgtattattttctttagttttaaaaaataactctagctattaactctttaaatattgctcatg<br>gccccgctttctggctcctttttctaggacttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	NA	NA	NA	intergenic
0	chr11	97101796	97102111	1000050	0	+	Ya5ac2105; RIP_Alu_chr11_096_01	TGTGATTTACTTCTTGAGTTTTCCT	AACAGAAATTGAATGGACACCC	SINE	Alu	Ya5	gaaactgtcacatttataaggtattattaagaattcttgtttcttagagactttagttcaaatcaatccattaaaaggattggccagttgcttggtggct<br>gatgtaaattaaatgctatttcaatgtaaaatggcagctcttaaacagatcttattaagtgtatctatgataatgaatttcttctgaccaaatttagcag<br>ccttttctctcttaaacttttaaaacctcagagtagtctcgacaaatatggtttttttttttttttactgtgatttacttcttgagttttcctaagagtt<br>ctctgaaactttattttttctagtgtaagtttctgaaacaaaatcactgagatctctatttttgtttttctatctactttcatttt<font color="green"><u>AAGAGTTTATTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGTTTATTATT</u></font>ttacttaatttctaacttagggtgtccattcaatttctgttgtacaatcaataaagcatcaattcaaataatct<br>tttcattagatttgaagttaaattaataataattaaaataccctgttattttacagttaacaaagcactttcttgtatgttacataatactataaatctg<br>tatactagatgtgattctcacagatttggactgggtatgtgacttgtttgtcttaagattacttgtggagcttaggcttttgcattttgactgtcagttc<br>catattttttccaaattcaacatattaaagtacttaagctcatattccatgccagaaactatgctagcagctgaactatgaaatattttggtcccaaact<br>catttgagtttg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	174	NA	intergenic
0	chr11	119719522	119719801	1000051	0	+	Ya5ac2122; RIP_Alu_chr11_119_01	GATTATTGGGCCAGCTTGAA	GAACAAATTCAGCACGAGCA	SINE	Alu	Ya5	ggaatattgccacgaagtgtgttatgaggttgattagaatggactgacttgatgatcctaagagaaaggctgggtgtggtggctcatgcctgtaatccca<br>gcactttgggagacccaggcgggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaagccctgtctctactaaaaatacaaaaaaa<br>attagccaggtgtgtggcgggcgcctgtaatctcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaa<br>gatcgtgccatggcactccagcctgggcgacagagcgaggctccatctcaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaaaagaaaag<font color="green"><u>AGAAAGGA<br></u></font><font color="red">TCTCAGCTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGA</u></font>tctcagcatacc<br>tgtgtttgtcaaggaggctgacttcccacctttgccccatctttgcatttctgaaaagtttctttagagagtaaacacagttcagtcaagagccatgtcc<br>tctccccacacatgtggctcacagccctaagaggtggaagggccttgctttagggcgcagtgaggaatggctgcaggtgcttggtgctgggcatgtgtgt<br>tttgagtgcccgggtgtgtttctgtctgtgtatgtaacacacgtgtcaactgggacctatgatgctggctggaactcccttttcatatcctagggaagtt<br>caatgttttatcctgagatttctaagaatttccagagaggggagtgagcttgagttctcatgagggtcttggctccaagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1123	835	NA	intergenic
0	chr12	129840698	129841001	1000052	0	-	pAlu12-129579553;Ya5ac2130; RIP_Alu_chr12_128_01	ATTGCCAGAAGCTTTCGTGT	TTCCCTGAGCATTTACTGGG	SINE	Alu	Ya5	gtctcactctttcacccaggctggagtgcagtggcacaatctcagctcactgctgccttgacctcccaggctcaagcgatcctcccacctcagcttcatg<br>agtagctaggactacaggcacacaccaccatgcctggctaatttttgtatttttattttatttatttatttatttatttatttatttatttatttattta<br>ttgtagagacagggtttcaccatgttgtccggaatagtctccaactcctggggtcaagcagccctcccgcctaggcctcccaaagtgttaggattacagg<br>catgagtcaccgagcccggcctcgtttcttatttattgccagaagctttcgtgtagcatttgttaattgacttcggcatccgccttacttt<font color="green"><u>AAAAATCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATCCC</u></font>ttcagtttctctagaagcagactgtgagattgggatttgtgtgcaactgatttatgaaggaagcgcttccaggagaacccagtaaat<br>gctcagggaaagtacgacgggaatgggtggagaacccaaatgaagtttcagatgaaatcgcgtgcagggtagcttcaccctgatcccgtcgggggtggct<br>ctggagggcaagcgatcctgctgcctttgataccccagctagaggcacaggagcagggctgtcacctccagcatcggactctgcgtgagggcccctccaa<br>gggccaggaactctcaggcactttaggctctttgcgcttgtgggcaaggagacttcagaaactaaaaagagtcatcaaggaaagttgcaggtacagattg<br>ttaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	476	163	NA	intron:TMEM132D:NM:133448:3/9
0	chr12	23795740	23796038	1000053	0	+	Ya5ac2140; RIP_Alu_chr12_023_01	GAACGTGGAAAACAGATGGG	ATCCCCATGTCACCATCCTA	SINE	Alu	Ya5	tctaatatgttaaagacagcctccaggaaaaggtgatgtttaagctgaaacttgaattaaattatagttagctagacaaagaagggaagaaagattgttc<br>caggcagggaaacaattttcatgaagaatcaaatggaagtgttagttatagcccagtccctgtattgctgaagtacagagagcatgtagggaagtgagat<br>caatgggattggggagggagtaagatgccagattatgtgtgatttctgtaaacattaaatgatctaaactttatcctatacggtaaaggaaatcatgaac<br>gtggaaaacagatgggttgagtaaaatcacttgggtgggaggttgagagctgtaatcaactagtgagcagatgcagaaatctgtat<font color="green"><u>AAAAGGTAATTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGGTAATTATG</u></font>gtcagactaggatggtgacatggggatggagagtgaggcagggactccagagatatttaaatggtataactggtaaaacctaatgac<br>tgttacgtatgagagtaacagaagactcaaggatgacttccaggtttttcactaaaacaactgattgacatgtggtagtatgtactgggtttgtaaacac<br>agattagaagcaagactgccaggtggggcctaaagggtgttgttgcggggaaggaacaaagagttctgttttagatattttaagtttgaaattatgatta<br>gatatccaggttgaggtatttattagacacttgataaacatgttaaaattttaggggaaaagccctcataggagacatatacttgagagtggttagcat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	444	131	NA	intron:SOX5:NM:006940:7/15
0	chr12	54853509	54853809	1000054	0	-	Ya5ac2169; RIP_Alu_chr12_053_01	GGGCTAGGAGGAAGTGATCC	GTCTGGGGAGGACATCTGAA	SINE	Alu	Ya5	ggcatgcgagttcccaaatctctgccgtatgttctgccatggaaaaacagtaagtgaaatagagacaaaatagttttactcttttcattgtgctaaatac<br>agttgatcttgattattcagatgtgttcagtctgaacaccttgcatttccatgacccttaaagtgagtgcctccttaaatgttatgccctaagcacctta<br>ctcagttcaccctactgaccgtggttaggagcaagaaattatgaacaggaaagtataagatcacagaagccaaaagaatattttcaaaatggggtgacca<br>ctgacgtcaaataccatgagaaaatttgggagccaataaaaaggttaatgatttgggctaggaggaagtgatccctgatttctttc<font color="green"><u>AAGGCATAATATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGGCATAATATCA</u></font>gtagggaattgggatcagaaattggattgtgagggcctaaaaggaaatgagtagagagaaaatgaaagtcataagtcataagaac<br>cagcataaagaatggtattcagatgtcctccccagactttagaggtcatgctgggtaaacaagtactaaatttgtatcatattaccgtcataatgaaatt<br>tccacatagagaacacccaagatactgtcatttttacttaatacaaactttcttttccaatgttgcccctagattcagattctcttgatttcagtctgtg<br>ctactgtttgagctaatttttaggtggctagaggattcactttaaaacgtttctccctggatacttgcatttcccaaaaaatgaagtcaccaaattatat<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	483	168	NA	intron:GTSF1:NM:144594:7/9
0	chr12	10937775	10938086	1000055	0	-	Ya5ac2181; RIP_Alu_chr12_010_01	TTAATTTCCTGGCTTTCATGG	TGAAATCATCAAACATGGCG	SINE	Alu	Ya5	gggaaaatatgctgaaaaattgaaaagtaggtatattgaaacttacaaaattatttttaagtttaaattttttttaacatcacaaaaacataatttgtta<br>taattttaatttcctggctttcatggaagcaaatacatcataatatttttaagatgtctttctctgattgtcttgttttcagttaagagaattgccatgt<br>ttggattcctcaaggatccagaactagaaataccatttgacccagtgatcccattactgggtatatacccaaaggattataaatcatgctactataaaga<br>cacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgattgactggattaagaaaatgt<font color="green"><u>GGCACATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAGTGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCTGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA<br>AAAGAAAATGTG</font><font color="green"><u>GGCACATA</u></font>tacaccatggaatacgatgcacgcataaaaaaggatgagttcgtgtcctttgtagcaacatggatgaagctggaaaccat<br>tattctgagcaaactatcgcaaggacagaaaaccgaacactgcatgttctcattcataggtgggaattgaacaatgagaagacttggacacagagtgagg<br>aacatcacacactagggcctgttgtagggtggggggagtggggagggatagcattaggagaaatacctaacgtaaatgttgagttaatgagtgcagcaaa<br>ccaacacggcacatgtatacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaatttaaaagaaaatgatcacagaatgctattcta<br>aaatatgtacat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1173	853	NA	intergenic
0	chr12	23097564	23097879	1000056	0	+	Ya5ac2182; RIP_Alu_chr12_022_01	GCTTCCCCAGTGAAATGAAA	TCCCTGAGGTCATTATTTCCA	SINE	Alu	Ya5	caaagtgctgggattacaggtatgagccatcgcacccatcctgcagttattttttatattgagcactgagcctgcctcatgaaattgattttagaaataa<br>gtgggatacattgtatagagagcaataactatacaatctgctaaaaactgttaaaaacttctctgtgtgtttgatagatgtaatgtgcactatgattagc<br>ctgctattctaatgtgtaaaccatagtttttaaatttgtttgtttgcttgtttgtttaaacattgcttccccagtgaaatgaaagttacttttactttga<br>gtcagtgtttagaaactgggtgtggataaatgaccttcaaaagtaaaacactggaaaaatgtataatgtttttacaatgctttt<font color="green"><u>AATATTGTATATGCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATATTGTATATGCAC</u></font>tgtcaactaatggaaataatgacctcagggatgtgtttatcttggttttagcccacttaaaatacatt<br>tagcctttagcttttccttaggcccaaaccacatcaaatgggccacacacagactcctgaggtcactaccactttatggtcattttaggaagaaaaggaa<br>agcaaactctctcttcatattacgttttaggcaaggaattctcacaggaagagtgaatatatattttttcctttctttctttttctacactaggtgacct<br>gctagtcccacttttcctaaaggtagatttttaagcctacaaaatgaatctttaaagccagtttcaagtgtacttcattgtgagtaagagaagcttcaga<br>atccaatattatctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	167	NA	intergenic
0	chr12	77908672	77908979	1000057	0	-	pAlu12-77841515;Ya5ac2205; RIP_Alu_chr12_076_01	CATTTGCACTCAAGTCCTTCAT	TATTTTCCCAAGCGCAGTTC	SINE	Alu	Ya5	ccccagaacctcccacagtgcctccgacttagtagataaattcagaaatgattgctcaatgactcaatctatcaatgtttatatctgaagtagagaacag<br>aagcaggtcccagagagttttcaaatggttacctagcccatgaaatcttcactaccaaaaagttgacagtcgttttttcagttttgttgtgaagtatctc<br>cagggatagggatccaccatgacctgctttatatcctgttcctatgaaaatcattgttatatttaagatgcctaatttataaattcagaattctattcct<br>cctttttaaggatttagcagatctacccagtaatatctgtgtaatgtttacatttgcactcaagtccttcatttaggcatacatt<font color="green"><u>AAAAATATTAAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATATTAAATAT</u></font>ataagtcctttgactgtatattagaatagtgtaccaaaagtcaaaaatagttcctacagccagtagcctaactatat<br>acaataacacctccctcatctcatgaactgcgcttgggaaaatatcaagtcctcactcaagcactatcctggtgttatttagacacaattctggcatgca<br>tggcttaccgtcagaatcagcaaataaagattagctttctagaagtaggcacattgccagcagtaaggaataagagtagaaatgagaattcaaaaaaaga<br>cagctgtctggatccatttagtacatagtagagtggggctacatattctaatataccttgaggacagtgttgtgtcactcacggggcagtaaattaatac<br>atatctct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	494	171	NA	intergenic
0	chr12	94669348	94669655	1000058	0	+	Ya5ac2222; RIP_Alu_chr12_093_01	GTGTTAAGAGGCTGACCCCA	GGATGGGTGGAAAAGAGGTA	SINE	Alu	Ya5	tgctgagggtgatagtcactgatgggtgactgttgtcccacagatgatgcttttgtctctgaaatttatcatgaattatctgagaacaaggactatgtca<br>taacatctctctgacatcccagccctaatactaaatagggcaggagaacatgctggttaaatgggctttggtgggagtgtgggagccggagagatggcgc<br>ttccatcgaggtgtctcccccgatggggtacagtggctgagggcagacgctgtgatgtcacgctgtctgacatggcacaggcatctgctccccatcacag<br>agcagaggcccgcgtgcactttcccagcctgggggtggaggtgttaagaggctgaccccaagggccttgactgtacttacgcctt<font color="green"><u>AAGAAACTGCTGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAACTGCTGTTT</u></font>gagcactaagtgttagcagcatgaaaaatgaacacatatcaatttatgtctgaatttactctcagaattccctgtgg<br>actctgtaaaatgccattttacctcttttccacccatccagctgtggaggcagtggcagatttacattattttacatccagttaagggtgttttttcttt<br>tggttatgtttttaaaaagaacatttattgcccataaaaaagtgtttttgttaaagacaatagtgcctttaggtagtaatagaatgctgtttcacaaata<br>tttataaaactattaaacaagctgagattgctgaagctccgattaaaaggtgcctcccattcatctttccctttagaaactgaagtagcttaactgcaat<br>tacccgcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	176	NA	intron:PLXNC1:NM:005761:21/31
0	chr12	95344069	95344366	1000059	0	-	Ya5ac2227; RIP_Alu_chr12_093_02	AATTTCCCCAGACATAGCCC	TGAGAAGCAAACTGTAAGCCAA	SINE	Alu	Ya5	atttgtggggaggtgagctccttccctaggaaaaagaatgcaaagttataaatataaaattaagtatgaaattgaatattttacttaaaatgggaaaaga<br>aattatagcatgttacaaagttttaaaagctgacaaatagtacaaaaatccagaaaaataatatctttattattggactactcaacactctctttacact<br>tttctgtttttgtaattgcatacctccatgtgcttcttcacatgcaatgatttcgtaatatcattttctagagatagagaattcagtcttccctatagca<br>tggttgaatactcttcctttaaaatatttatatattagaaaagattttcagcctcagaactggctattggtaagtcatgtaaattttt<font color="green"><u>AAAATTGTTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AATTGTTGCC</u></font>aaatttgggaaactccacagaaaatttctttcatatatgaactgtaagacttcatgtacatttcaagttttctcacagagggactgatct<br>taagtattctgaattgatgaccttcattagccagtttgtcattggtaaccccattgaactggtggattatggtatcagtatttcatgttagataaaaaat<br>aaatagataatcaaacaatataaaagcctattctttgtttgaaagtcctttcttcctctaaatgagttagttactatactttgggtataatttgaaaaaa<br>aatatattttggcttacagtttgcttctcattgtcagaataatttccttccatccttccttccttccttcctttctctctctctgtctccctctctct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1150	840	NA	intergenic
0	chr13	101906957	101907264	1000060	0	+	Ya5_545;pAlu13-100743498; RIP_Alu_chr13_100_01	AACTGATTTGCCGCTTTGTT	CAGGGGTACACTTATTCCCAAG	SINE	Alu	Ya5	aaccccatctctactagaaatacaaaaattagctgggtgtgcctgttatcccagcttcttgggatgctaaggcaagagaaccactggaacttgggaggca<br>gaggttgcagggagccgagatggtgccactgcactctagcctgagcaacagagtgggactgtctcaaaaaaaaaaaaaaaaaaaaaaggagacaaaaaca<br>acaacaaaaaaaccccaaaacctagagtggaacaaattcagaatgcttaagtagttcaagagtacactgatggggtctatctggttgtttaagtcaacaa<br>aatcaccactacctagtttatttatttatttatttttccaggatttcaagttagtttttagctggttaactgatttgccgctttgttaa<font color="green"><u>GAATGAATGAC<br></u></font><font color="red">ATGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAATGAATGAC</u></font>atgttaaaagctgcattcatgtaatgtaccaatgtgatgaacttgggaataagtgtacccctgtgaaaccattaccatcaa<br>tgccattgacatatccaccacctctcaaagtttcctcccacaccctttcttattattattgtcaggggacaacaattattggacacataatatatactga<br>attccaccatccaatcctgtctgtctgttgttgaggttgtttttatttttaatattatataaaaaagaaaaaagacaaggatttaccaactacccctgga<br>ctctacaatacacttaaatagtaaccagtcaactctacaacattcaattatttgacattttgttggaatttcttaaggtatgaggataaatcatctacca<br>tacataaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	415	110	NA	intron:NALCN:NM:052867:11/44
0	chr13	36438421	36438722	1000061	0	+	Ya5ac2247; RIP_Alu_chr13_035_01	TAAGCTTCTGAAGGGCAGGA	GTTTTTATTTCCATTTAGATAGCCA	SINE	Alu	Ya5	aaaagtaaaatttaaatagcatgaataaaaagacttcaggatttctggagtaacatagaagtaagttttaaggctgggtgttcagaatggtgcttcgtca<br>tggtagatgctcattaactgagccatttgggttttccttctttcaaatgtttgcccttgcatctccagcacccaacgttgccggtccactatagattctc<br>aatgcatactgaatgaatgaatggttgttgccatgaatgtttctactctataagcttctgaagggcaggaaagtacattatctcatattggaattgaaag<br>gtgtgaggcactcattgggcctcagttatgtctgctaagggttccacagacagagattctaaatacagggtatcattctatgat<font color="green"><u>AAAAAGTTGGCTATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAGTTGGCTATCT</u></font>aaatggaaataaaaactgtaaaacaaacaaaaaaactccatttttcttctctcttttttttttttttttggaatggggtctc<br>actctggcatccaagctggagtgcagtggtgtgatcatggctgactttagcctcaaactcctaggctcaagacttcatgtcacctcagcctcccaagtag<br>ctgggaccacaggtgtgcaccattacacccagctagtttttaaatttcttgtagacacaggtcttggtatgttgcctaggttggtctcaaactcctgagc<br>tcaaccagtcctcctgcctaggcctcccaaagtgttgggattaaaggtataagccaccatgcctggccccagagctttcccaaatccaagaaaagatcaa<br>aa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	166	NA	intron:MIR548F5:NR:031646:1/5
0	chr13	23055219	23055513	1000062	0	-	Ya5ac2259;pAlu13-21985103; RIP_Alu_chr13_021_01	CCCGAAGTGCTCCATTAGAA	CCATGCATAATGTTCAGGGC	SINE	Alu	Ya5	atcacctcccatggggccccacctccaatactgggtattacaattcaacatgagatttggaggggacatccaaacctgatcaggtgccctgcctcctcac<br>taactcaaccccccttttccttttactgtcactagttggtttctttgggccattctctttagtaaaagggaattgaagatcacaccaggaagagactgta<br>gtaactggaactaagtgaacacataatatgtaaagtaaagcaaaggagatatttcagacagaatttgttaggacctaatgtggaaaagctgaagtaggac<br>aagagcctctctaagatggcatatatatggcttacttactaaactctatctttaattcccgaagtgctccattagaagtcctggatt<font color="green"><u>AAAAAAAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>AAAAAAGA</u></font>aatagctcactagccctgaacattatgcatggtattgtattaggtaattcctcaaaattaaagattaaattccaacttacttttcaaagaat<br>aattatacctctgtcatattgattggtttacatgattgtcaagtgtaatatgtcatttaagttaattaaatatccatttctacttcatcatgcattttta<br>tcaattaaaggcattgtactttaatctccacaaatacacaactgttggattccataacaaggttcagttatgattttcatgtatgacttgcatttcagtc<br>ttccttactaaattgagagtactccaaaagaaaaaaaaaatttgtatttccaaaatccaagatgttagctaaaataatgtaatacttaatgaata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	383	75	NA	intergenic
0	chr13	104009864	104010173	1000063	0	-	pAlu13-102846400;79718;Ya5ac2265; RIP_Alu_chr13_102_01	GGTGCCGAGCCTTATCATTA	TGTTTTCTGTTCCCCCAGAC	SINE	Alu	Ya5	tgcccaagatgcctggtcttaaaaatggccataagattttatctaaatctactgggttgtattaagatagtcagctctccccagaatgaagtttgcagta<br>ggtatgaacaaatcagttgccagtctattagagcacaggttgtctgatattctacccattctccagattcaggaccaatttgggagcaacctgagtccaa<br>ggtgcttagtttccagtaccagctcagtcctaagccacatctggttctagattagctaaagaaggtaaagtccatacccagttgttgaggggaacaaact<br>aaataagaagagtgaatgcacatttatgaaagtgtaaatgaacgattctgttatgaacacaaacatgaccagggtgccgagccttatcatt<font color="green"><u>AAGAAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAATAAAT<br>AAATAAATAA</font><font color="green"><u>AAGAAACTG</u></font>aattcatgactcccagtctgggggaacagaaaacattactgagctggagcacattggcccattcagttctgaaatgcatgt<br>ccaacaggtaggtggagccctgagcaagaattgctactgtgttgaagtcacagagccagagtgcttccatgtagccagagaaaatcttccagagtaagtc<br>attgctgtggtgagccattgttgggagaggttgtgggtacgtgagacatacaaacatttgtgaatccaccaaaaagaggttaatttttattcctaaaatg<br>gatagacaggttatgttagaattccttctttaccactgaaggggacaccagatactaagcttgcaacatagtaaaaccctgtctctaaaaaattatttaa<br>aaattggttg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	382	63	NA	intergenic
0	chr13	104144391	104144661	1000064	0	-	Ya5ac2300;pAlu13-102980933; RIP_Alu_chr13_102_02	AAGCTCCAAAGCAAGCACTA	TGTTTCTTAAGGGGGAAGCC	SINE	Alu	Ya5	ggatctatgaaagaaaaacataagcccaggaatgtaattacattggcaaataagagggtttttttcttatttaaatatcttcaacaggtttaatgggtag<br>gtaataggttgataggtgcagcaaactaccatggcacacatttacctatgtagcaaacctacacatcctgcacatgtactccagaacttaaaataaaata<br>caattaaattaaattaaaaaataaatatctttaaaagacatataataacaaagtactatggggtttatagtatacctaaaagtaaaatgtgtaacaaaaa<br>catcacaaagttatgtgaagtggcataatatcctttgaagctagactgtgtactataagctccaaagcaagcactataattacaaaac<font color="green"><u>AAAAAAGGAATG<br></u></font><font color="red">GCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTA<br>GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGGAATG</u></font>gaagtggaaatttaaaa<br>atattttgaaccaaagatgaaatgacaacatattaaaatgtgagcagtacagcttaagcagttattacagaaaaatttatagcactaaacaacaatatta<br>ggaagaagaaacattgaataatctcggcttcccccttaagaaacaaaaaagaaaggtaaactaaatccaaggtaagcaaaaaactaaaataagtcatagt<br>aattaataaaatgaaaatacacaaatatatactctgtatattgtacatattatatatacataatatatatttactaggtattttaataaaaaaacacagc<br>tctattttcaaaatttaagaaatacattttaaaaaatctccagcctaataaatttaaaacaaagattactt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	489	206	NA	intergenic
0	chr13	31175598	31175920	1000065	0	+	Ya5ac2268;Ya5-MLS12;pAlu13-30105500; RIP_Alu_chr13_030_01	GGGCCTGTGGTCAAACTACT	CAGTTCTGCTGCATTCTACCA	SINE	Alu	Ya5	cactgatcaatgtactttgtaatctccgccacccttaagaaggttctttataatttcccccacccttaagaaggttctttgtaattctccccacccttga<br>gaatgtaatttgtgagatccaccgctgcccgcaaaacattgctcttaacttcaccacctatcccaaaacctataagaagtaatgataatccaccaccctt<br>tgctgactctcttttctgactcagcccgcctgcacccaggtgaaataaatagccatgttgctcacacaaagcctgtttggtgtctcttcacatggacacg<br>catgaaagaaaccctacctggttctgtgtcttacctgttgggggcctgtggtcaaactactagtacggagttttagtgtcctcacttt<font color="green"><u>AAAAATGAGGGT<br></u></font><font color="red">TGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGAGGGT</u></font>tgtaaggtaactacctactttttatagcattgtagtgaagttgaaatgaattaatccacatatat<br>tatagtgtggtagaatgcagcagaactgatgatgtatgacttctaagactagtccttaagagacctgcagtttttgcttttgccctcttggaacactcct<br>gttgccatgttaagaaaaactctggggagactatgaaggaagagagcatactcggggcaggggggtgaacaggacgtgcacatgtacgagcgtacaagcc<br>aggtgacaccagtaccacagcctcagacatgtcaccggggataccagcaccacagcctcagacatgtcaccggggacaccagcaccacagcctcagacat<br>gtcaccggggacaccagcaccac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	487	152	NA	intergenic
0	chr13	24710968	24711268	1000066	0	-	Ya5ac2272; RIP_Alu_chr13_023_01	GCCCAAAGGGGTGAAATAAT	TTTGGATGCAACAAGTCTGAA	SINE	Alu	Ya5	cctcagcctcccaaagtgctggatcacatgggtgtgagccactgcccatggacttagttacttcttgatattatgtaagcagaatgtaaagaaggttgta<br>agtatttttagttttctgtatattatggtgttttgacatcttaaaaatcctttctggctgaagagagactgcccctttctggactagtaaattcttagag<br>acagcaaaggcccagccaggagcaggcccctggcaaacccagggctggagcccatgtcttcttctttcagttcagtggcctttcaccccaactgaagccc<br>aaaggggtgaaataattttgccaagttcacacagtgactaccagatgtcaacacctgtctctaatgcatgtgaccttatctctcata<font color="green"><u>AAAATAAAGAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA<br>T</font><font color="green"><u>AAAATAAAGAACA</u></font>tatttaatcaaatttgcatccacaattcagacttgttgcatccaaatccatttatccattcacactccttaaatatttcctgtggg<br>cctactatgtgccagtcttgtgctggggcctatctctcagagcccaataggcccagagaatccacaacgttggtgaacatcgtggccccaaagctgagcc<br>catcaaattagctttggaaagtctatatacagaattcatctgacagttttttctgagcatttcctagttctctttctttcctttctttccctccctccct<br>ctctttttctctctccctctctctcactttctttctttcttctctttctttttttgactaagtttcactcttgttacccaggctggagtgcaatggcacg<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	150	NA	intergenic
0	chr13	44380323	44380652	1000067	0	-	Ya5ac2278; RIP_Alu_chr13_043_01	CCACCTGTGGGCATCTAAGT	GGGCACCTCCTCTCTCTTTC	SINE	Alu	Ya5	tggggaaatcccatctctactaaaaatacaaaaaaaaaaaaaaaaaagctgggcatggtggtgcatgctggtagtcccaactacttgggaggctgaggta<br>ggagaattgcttgaacctggggagcggaggttgcagtgagctgagattgcaccactgcactccagcctggatgacagagtgagactccgtctcaaaaaaa<br>aataaataaataaataaataaagaagaagcactaagtctgaagacatagttggtttggatgctacattacaatatatgacaaacaacatttcatatttcc<br>agattttatagaccacctgtgggcatctaagttcattaaaagctaatgttttgggagaggttagctgccatcaaccacccttatc<font color="green"><u>AAAAATGGGATAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGGATAAAT</u></font>gaaaggaatcagagaattggtagtgaaagagagaggaggtgcccacagcaggagg<br>tggagtatcaagaggaaggggagggtatatgcagaagacagtaggagacagcaaacatgttctgcctgcttcacagtcttctggggactgtctttgcagg<br>ggtaatcctggagtttccctagagctgcggcttaccaagcctggctgtacattggtgcagcctgaggaggtactcagtgaatcgcaatcactgagatggg<br>acccaggaagcagaacttttcaaagtgccacaactggcgctgatgtgcagggctacatggctctagaactagtccttgctggaaaggcctgggataaagc<br>atcgtaagtcttcccactggcagtttgatc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	477	132	NA	intergenic
0	chr13	49373232	49373549	1000068	0	-	Ya5ac2282; RIP_Alu_chr13_048_01	GCTGTTATATGAAGTGTTCACCTTG	TGGAAAGCAGAGAAATGCTG	SINE	Alu	Ya5	tgtggctcacgcctgtaatcccaacactttgggaggctgagacaggtggatctcttgaggccaagagttcgaggccagcctagccaacatggcgaaaccc<br>catctctactaaaaatacaaaaattagccaggcttcgtggcacgtgcctgtaatcccagctactcaggaggttgaggcaggaggattgcttgaacctggg<br>aggcagatattgcagtgagccgagatcacgccactgaactccagcttgggtgacagagtgagaccccatctcaaaaaaaaaaaagttttatttcatgatt<br>tgggtgctgttatatgaagtgttcaccttgtacttatgatttgtacacttctgtctatttacataatacatcaatcaaaagtttact<font color="green"><u>TAAAAATAAAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGC<br>GTGAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAATAAATA<br>AATAAAAAAAAATAAAAA</font><font color="green"><u>TAAAAATAAAAAA</u></font>atcagtatttgcagatgttttaaagagtcaaatagttctacaaggtttaaaacagcatttctctgcttt<br>ccattccttcaccctcaccccataatatctatctctccagagataatctctttcaacttctaaaaagtcagttcttttgcttttgacccttatatctctg<br>aataacatgcttattttcatgtcttaatttttcagttttaagaattctttattgacttccaatatggaagctggaaacgtagctctttctcctttgccca<br>ctcactgtgcacagaaatgtcttccctacctccatatcctccctatgtaaattattcctgattttggttttatttgtgttcaatgtgtataagatatttt<br>ctatatcagagctattta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	167	NA	intergenic
0	chr13	105161220	105161523	1000069	0	+	Ya5-MLS22;239088;Ya5ac2294; RIP_Alu_chr13_103_01	CGACTCTGGTGGAGAAAAGC	TGTTGCCAGACCTTGTATGC	SINE	Alu	Ya5	ttgcctagcccaatgttcaaaagggtttttttctaggtttccttctaggatttttagtttcaggtcttacatttaagtctctaatccacctttggttaat<br>tttcatatgtggtgagtaatagaggtttagttatgtacctaagccctggagattatgaacctcacataaatatgagactcaaatgcctaataaaaatagt<br>aaacacattgactcaggagaaactagaggaaaagaaaatgatttatactcaaaaaccagatttagccatgtaccaagaatatattgtaaaaaacttttca<br>tttaattaaaattaaaaaataaaattatctagaggaataatttttactgaatttttacccgactctggtggagaaaagcctaaataattt<font color="green"><u>AAAAGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGATCTT</u></font>ggatgtgtagcaacacaacaaattatgtattcctgtttctagattgtacatcggagaaaataattttgttctatgccttgtatgta<br>aggcatacaaggtctggcaacaaagcaaaatattcagataagaaggcacatgatatattctgccttttatggtaggttttacttaactttagcaaaactg<br>gcttcactatttaatctactttctttgttttttaatctgatgccaatttcaatttacagtaaaagggaaaaccttgggcaaattgcctctgttgggcagc<br>atataggtatcattccataactgattatctttggttatttatctcaactggttagaggaagtttttaataatgtttaaaggggctacagatagataaact<br>gtaa	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	150	NA	intergenic
0	chr13	64448599	64448898	1000070	0	-	Ya5ac2296; RIP_Alu_chr13_063_01	GAGAAGTCTCACCAGGGCAG	TCAATGTAACCGTGTTCCCA	SINE	Alu	Ya5	agctaagcctcagagacaaatgtaaatcctatagaaaccaaattactcaaatcagaaaaatacttaattaaaaaggacttttgtccaaaaaggacaaaaa<br>gtctcttatcatttcaggagggaagtaaagccctttagtaaagatggcctcataactaaacaaattccaaataaaatgaaaaagcgtctaccaaagaaag<br>gaaggttcagcttgagaagtctcaccagggcagaaaaggcaagccatggaaccagagagttcaaagggctcaagtgagtactcaacaccagtttcaagaa<br>ttactgattctttccaataatgaactttttttggttccactactggacatcgtttaggtcaactaaataacagagagagtctctct<font color="green"><u>AAAAGAAAATAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCCAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGAAAATAACA</u></font>tttatttggaaataaagcattgcaaatagaatatgtctgccatagtaaaccaggtgtgtgttccaggaggtaaaggaagacaaaag<br>cttttcaggaatgtataagaaagattacataattgttttgagataattattatcttttgctacaagggcgatcccagctcaaggctgggcaggaagttgc<br>tgggcagatgtccttgtagaagcatttttaaaatttttggatgtagaagtttattttttgcagtctttccttatagtttttgttatcaggcatgtatgca<br>taagtattctctcttcatagctttccctagctgtatttatcagggtgtggatttttttcagcacgagttactccattttgattctaaaatttttcacagg<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	955	641	NA	intergenic
0	chr13	40028482	40028791	1000071	0	+	Ya5ac2305; RIP_Alu_chr13_038_01	TTCTGAGTTGGTGACACTCCA	CTTACCCAGGCATCCTTTGA	SINE	Alu	Ya5	gggttttgagtgtatacgtggacttcctaagatacacttcgattgagttcttttattgcatcccctaggcaaatgcaattgatttcagaattattgattg<br>ttttggatgttccaacccagtttcccttcatacttggggataatcaagagctgatttctgattctcaagaaaaatggagaatttaaggaatattagatct<br>caaactatcggtataatcttctaatttgtctcattataaagtattctatttctataggacaggttaataatccagaaaaatgaaactaagatgatcaaaa<br>cctgtagttaatactttaaaatacaatccaacaccatttaatcttctgagttggtgacactccaatttcttctctctaacgtttcctt<font color="green"><u>AAGAGTTGTAAT<br></u></font><font color="red">TGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAGTTGTAAT</u></font>caaaggatgcctgggtaagagctgggtttggttttggtacttaggtcttttggtaattccattttagcaccactgaat<br>tatcattagtgctttaaagagctgccttttgtggatagaatgaattattatacatattcatcatttttgtcttcctactgatacatttaaggagtggaga<br>tacaatattttcatccaataggtcacaatgcatataattgctgacattttaaatgcatctggaaaaataaatgttactatattattgtagattatagagt<br>gtccttcacttttttacttttattatttccactttggagattctgtcaataaaagtcaagtgccattccaccctgtgagggtacagggagaagaagctgt<br>ctttcaatca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	398	76	NA	intron:LHFP:NM:005780:2/4
0	chr13	80081408	80081708	1000072	0	-	Ya5ac2323; RIP_Alu_chr13_078_01	CACCCATGTGTCCTTGAAAA	CCATGGATTTTCTGTTTCTGTG	SINE	Alu	Ya5	ggcatacatgtaagtattcaaagaaaagcagaaaaacattcacaaaaatgataaatatcaacttcaggataatgttaaagggattaagagatgaggaaaa<br>gcatagaatgtaaaactttatttcatttcttaaaaaaaaaaaagttcaagatctcaaacaaatacagcaagatgttaacatctattatgtccacggtgga<br>tatagaactatcttttactttatgtttgaagtgtttcatagttttaatatttaaattttaaaaaaagttgatcctgacaagttgtattccacgaatagac<br>atttttaaacatgaaagaagacagaatacacagcacccatgtgtccttgaaaaagcaactaccccatgatgaaaacaagacaact<font color="green"><u>AAAAACTCAATCAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAACTCAATCAGA</u></font>acaaaaaacacagaaacagaaaatccatggaaaagatataatggtaagcactgaatccatttaaatatagaactaaggttaaac<br>atagagctaaagactaacttctggtaaacagaaagcaaatattatatgccctaaaaaagcaaaaatacaacataaaattcagaactgaagaaagagatga<br>caaaacgtatgaacagcactcaacttcatctttcatggcagggatttcatatctcatctaaattttaaacatgcagttttaaaaaatactccgatttctt<br>actgttttttataaactattttcccaattttagtgaactcttacagaacctaagatttttgtggcaaagaaacctttacctagagttcaacatttaccta<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	413	97	NA	intron:NDFIP2:NM:019080:1/8
0	chr13	84479042	84479342	1000073	0	-	Ya5ac2330; RIP_Alu_chr13_083_01	TTCACAATGCAAGATAAGAAAAAGA	TGACTGGTAAGTATGGCAAGGTT	SINE	Alu	Ya5	atttgcagttaatgttttaattttctgtaacttttcaaatttctgacttaaagctgttcataatgccttttcaatcttgatcttaaatttcttttattac<br>tgcccaacagaacatttttgagcagatagtaatttctattgatttctaaaataaactacaatttgattacagttacaagtagagtttagtggtttcaact<br>gctaagaaacataagctaacttttatatatctatgttaccatataaactacatactatatgacagtatgacactatggtcatatacctttatacttatat<br>ataaatatatacctatagaatatacattgtatacaatacacatatacattgtgtatgtgtatgtgtattcacaatgcaagat<font color="green"><u>AAGAAAAAGATTAGTGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAAAAGATTAGTGAC</u></font>attaaaatgacatttcaaatgctacaataatgatggagttgaaacatataaattaaaccttgccatacttaccagtcacag<br>tgttacattttatgtaccccataaacagattcttttgaaaattcagtattaattttaattaaactttcagtgtttgtcgaattccattttgttcctattt<br>ttcttttatagatgacctaatttcagaagctgcatttgtgctaattagtttcattaattcactattcacttacaacatgtggctataatgtatatgtgtg<br>tatgtatgtatatctttatatatgtgaatatatattcatttataacaaactttttagtaagggactaatgattttattattcaccttttaatatctgagc<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	430	112	NA	intergenic
0	chr13	87155193	87155489	1000074	0	+	1763;Ya5ac2333; RIP_Alu_chr13_085_01	TTAATGGAGCATCGGAGACC	ATTCTGCTTTGGCACTTTGC	SINE	Alu	Ya5	gcctcagagtctgttttccaggaagtcagtgaagtacaaaagtacactgaggaaagaaaagtacctagactttttgaggacaattaagataaagactctg<br>tgctaactgataactgttgatccaaatgctgaataattttaattcttacttaagcactaaaagggaatacaacacattctatacattccactggctctct<br>catttctggatctcacaggtagagaagtgagacagatatgtcttttttttttttaatggagcatcggagacctatataataaacttctattgtgatagac<br>ttagtgactttggcaagtcttataactgactcatatgagcttactgtattcactagactgtatcatatttttcttattaaccagtattaatc<font color="green"><u>AAAAAAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAGC</u></font>aaagtgccaaagcagaataaaaactatatgtattgacattcatacgaaatgtatttatgtatgtcataatataaatccatgcaaaatgacatttt<br>caccataaaggtcacagtaaaaagaaaaataaaatgttgggccaagcacagtgactcatgcctgtaatgtaagccctttgggaggctgaggttggtggat<br>tgcttgagcccaggagtttgagaccagcctgtgcagcatagtgaaaccccatctctacaaaactacaaaaaattagcctggcatggtggcatgcacctgt<br>agtccagcaacccaagagtctgagctccagaggtcaaagctgcagtgagctgtgactgcaccattgcactccagcctgtgtgacaaatgagatcttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	471	166	NA	intergenic
0	chr14	59545314	59545605	1000075	0	+	Ya5NBC333;5330;Ya5ac2388; RIP_Alu_chr14_058_01	TCGGTTTGTTCAAGATGCAA	CCCAGACTGGTGGAGAAGAG	SINE	Alu	Ya5	tttgagttttctaaaagaactctaaacttagaactctaaatttgtagatttaatataaaccatttgggcttttaaatggcatttgaaggcctccatgctt<br>taaaaactgtttggaaaagataccttccaagcaatcaattaaaatacttgagaatataaagcttccatttataaaaggagtgaaaacaaatattttttcc<br>aaacttctgtttgagagaatacgtataaatgttttttatgaaaaactttttaaaatgtaacatttttcagtttaaaaataagttcctaattgattcatct<br>aagacattattataaattaaactcttaaatttaaaaaaaaaattttataccaacaaatcaaaggcaaatataaattaaacttttt<font color="green"><u>AAATAATACTTTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAATAATA<br>CTTTTAG</u></font>ttttagatacttttgtttctcagtgtaaatttataccaaaaaaatttaattcccatgtatttgggaatgatagcatgccaaagtgcattaaga<br>tatcttacctatcttacttatctaatttggaatataggtcaaggtgcatgtaacagggctccaaaataacagtgttttgaattcgccagaaattatttct<br>ctcttctccaccagtctgggagtaaatagtgtgatactagcttaggacatctaccccatgaggtcattcagggacccaggctccttctcttattgttgca<br>ccatctctagtatgctccactgattctcatggtccatagtagctcaccacctcatccacatcatccacagttaaaacaaggtcgaaaaaatg	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	588	281	NA	intergenic
0	chr14	83019617	83019882	1000076	0	-	13644;Ya5JW580; RIP_Alu_chr14_082_01	GCAACTCAGAGACTTTACTGTGC	TCCACTTTCACTCTCTGGACATT	SINE	Alu	Ya5	aaatagatactttaaaaatatttcacagtactgtcccaaactgaacatatgcatactccatgacccaatacttttaattctaggtaaatactcaacaaaa<br>acatggatgtatgttcaccaaaagtcatttgtaaaaatgccgataccagcaagccttgaaaaaatgcaaacatctgtcaagagtagaatgaataataaat<br>tgtgatgtattcattaaaccaaatctgttcagcagttaaaacaaataaactgcagctctacctattgtataaaaatagggatgaatctcacgagcatact<br>atgtccactttcactctctggacatttataataaagtgaaaaaaacacagaagaaatgcaaaatatcctacagtttcacaaagtt<font color="green"><u>AAGAAGTTGATTACT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTTGATTACT</u></font>ttgggacactaatatatta<br>atttgcacagtaaagtctctgagttgctgtgtagtagttttctaggcctgccatgacaaagcaccacagactgggtggcttgcacaactgaaatctactt<br>tctcagaatatggaagatagaagtctgagattaagatgtcaacacgattgtttcttctgaggcctctctccttggtttgcatgtgattgtcttcgccctg<br>tcttcacatgatcttcctcctgtatgtatctgtgtcctaatttcttagaaggacagaagacatgttgtagtagggcccacctcaatagcctcctttttaa<br>cttcattacctttttagagatcctacagtacagttgctttctgaagtacctgggtttaagtcttca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	424	144	NA	intergenic
0	chr14	100845014	100845330	1000077	0	+	Ya5ac2360;pAlu14-98834954; RIP_Alu_chr14_099_01	TAGACGGACACCTCAGGACC	CAGCCCTTCCCTCTTTTCTC	SINE	Alu	Ya5	ctcctgcctcagcctcccgagtagctgggattacaggcgtgtgccaccacgcccggctaatttttgtattttagtagagacagggtttcaccatgttggc<br>caggctggtctcgaactcgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccactatgccctgcccagaaagatt<br>ttttttaacaagtagaaattcattgcagtgtgaatctgtgtgttgggagtgaaatgggtggatttggatcatgccctcagaattgctccctgcacacttg<br>ggtagacggacacctcaggaccttagccttgtgctgtgggcctgtctgtccagctggctgctacagagatgggatacctggggg<font color="green"><u>AAGAATGTTCCAGGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGTTCCAGGCA</u></font>gagagaaaagagggaagggctggagcacagggaaagggtgcaggggaaagtggcaggcctttcccac<br>catggatcctggacgtcttttgatttcagtattttcagacctaccctcgttcatgatgatgagcatatgttctcacttgttgctaataagcagtgcggca<br>ggttttctttatacatttatcttcatggatttatacatctagcaaacatatgctagtatttgtgtaggataaagttctacagtggggttgctggggtgaa<br>aatgatgtgtttaaacttgtaacacatatgaccaaaatggaccttccaaaggcatttttaaagtcctgtctctttctctgtaggcattgtctcttcaggt<br>cttctttttttttcttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	453	126	NA	intron:WDR25:NM:001161476:1/7
0	chr14	65527159	65527428	1000078	0	+	Ya5ac2366; RIP_Alu_chr14_064_01	TTTGGTATGGGTACAATTTTTGC	ACCCAGGTCCTCTAGTCGGT	SINE	Alu	Ya5	caggctggtcttgaactcctgacctcgggtgatccatccacctcggcctcccaaaatgctgggattacaggcatgagccaccgcgtccggcccccttttt<br>cttgattataaatgtaaatacatgtttattgttttaataattgggatacataaaatataaaaaagaaaatgaaaaacaatcatatcactattaatatttt<br>ggtatgggtacaatttttgctatttatatacatcacaggtacaaatacactttttaaaaagtttgagaccaggtgtggtggctcacacctgtaaccccag<br>cactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagccggaccaacatggtgaaaccctgtctctact<font color="green"><u>AAAAATACAAAAAT<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATAC<br>AAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTG<br>AGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAAAT</u></font>tacccaggcgtggtgg<br>ctcacacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacacaggaggcagaggttgcagtgagctaagatcgtgtcaatgcact<br>ccagcctgggcaacagagcaagactctctcaaaaaaaaaaaaaaaaaaaaaaaaacagtttgagatagtattgtacatactgttttctcacataatatgt<br>tgtaagtatttgcctgtatcgttaaatatttaaatgcgtgtttataatggctgtatattaacctgtgtcccatgtactagatagttttagcaaatacacc<br>atttttgaacctttgggctttgtgtgtatctctgattccttatactaaattcttagaagtgcctttcatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1068	802	NA	intron:FNTB:NM:002028:11/12
0	chr14	26005813	26006047	1000079	0	-	Ya5ac2369; RIP_Alu_chr14_025_01	TAAGGGTGAATGGGAACCAG	CAATCCAATACCACAGGGCT	SINE	Alu	Ya5	agtgaactagagagcattaaaaattaagaaaattaaagttcttctttgtttcctccttttctggaaaatttaatatgaaagccgttcagttggaccatct<br>gggatagtaatgagggaagccacgatggcccaaagctatgcattagaggccttggaaataagaaaggggaaggtgggggagagcgatcatcatgggcatc<br>agagcctgagtggggtgaggagggtgtccaggtgcaggatctggaacatagcaaaatgtcacatactgagcaaggtaagcagtgcattacacacagaggg<br>attgatcaaaagattgactatgtaagggtgaatgggaaccaggttcctcactaatgaggaaaggagttacaaagaaagaacact<font color="green"><u>AGAAAAAGCCCTGTGG<br></u></font><font color="red">GGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGTCTGTAGTCCCAGCTA<br>CTTGTGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG<br>ACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAGAA</font><font color="green"><u>AGAAAAAGCCCTGTGG</u></font>tattggattggatgcatccatgtgaaatcagattttttcttatacagat<br>aaatagatgtagtaataaatacagattgagtcaattgccaacatgatgtccccatcaccctaggataatttagtgtgcattcctttcctacaaagaagga<br>tattctcctacctaagccaatccagaaatgcaggtttttccttttttaggtgtctgcctggctgccactgccacctcagcagtacatgtctgtcactgga<br>gctggttttagggcaggccaggagagagaaaagagggggagaaacaacaacaaagatcttccccattctctcaggctcataggaatccccattcctagtc<br>ctctggtcagaaagacaggattcccccaaaaattt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	341	90	NA	intergenic
0	chr14	52594682	52594980	1000080	0	+	Ya5ac2376; RIP_Alu_chr14_051_01	GCTCTTCATGGGTTCCTTCA	ACAGAGCCTTCCCTCTGTGA	SINE	Alu	Ya5	aacagccttaggaactacccttggtaaggaatcagaagatcatgggtctacttcagacggactctaccaaatttctctcagcatggccttggacaagttg<br>cttatttctattcatcttcctcatcagcaaaacagactcttcatgaaagggctcttcatgggttccttcaaggacataggtgtgttaaagcaaaataaat<br>atagcctgagaaggactccattcttctatatttgagtccttggggatgaactgtaacctagcttaataaacaagattgaaaacctaacttaggagtatgc<br>atctgtaacaatagctgagtcttggccaatcccagcagccatacttcaactactcacacactgatgagtgttcagactgtgttc<font color="green"><u>AAAAAAGGCAAATGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAGGCAAATGCC</u></font>aacctgcaatcaatccagctgttctgtgcgtcacttccggtttctgtaggtcatttccctttttttgtctataaatcttcttcca<br>ccacgtggttgtgctggagtctctgtgaatctgctgtgactctgggtgctgccccattcgcaaattgttcattgctcaattaaacttctttaaatttaat<br>tcagatgaactttttcttttatcaggtgtcacctaacatacaagtttttggactaattctgcaaacatatggtatgaattaaagcagtggttctcaaagt<br>gtagttcccagaccggtagcatctgttgggaacgtgatagaaatgcacattcccaggccccatccttaacgaactgaatcagaaactctggggcttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1173	858	NA	intergenic
0	chr14	52756799	52757113	1000081	0	+	pAlu14-50746736;79667;Ya5ac2380; RIP_Alu_chr14_051_02	GTGATCACGCTGCTTTATGC	GTGATACAACTCACTATCTGGC	SINE	Alu	Ya5	tttttataaaataagcagaatatgtttatgctggactgtgtttcagcataggctgtgatacagacctacaattctttggtgatgctaaaggcaactcaag<br>aaagacaaggaatgatccttcaaagcagctcaaacaggttcaacaagaggcttgagtggaagatacctgccatatgtaaaacggtactgtgggcagagaa<br>aatgaacagtgtttcaaacccaagccccaggctggaaatcataaggacagaatctctgactgttaaatgtagatttgtgatcacgctgctttatgcatgc<br>aagactctgtatactgccattcaggatgagtaccatcaggattctatttctttgataaagatgaacgattctccaaaacaacac<font color="green"><u>AAGAGAAGCCAGATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGAAGCCAGATAG</u></font>tgagttgtatcactgtagtaggcagcttctaaaagagctaccaatgatcccggtcttcaggtctccagg<br>tattcatgcccttgggtaattctttccctgcaagcatgatctggacctacagacttgcttctaaggtgtggaatacagcagaaaaacatctggaaagtta<br>cacctttccaaataagccttggttgcttgctcgctccgatggaaaccagctgctgtgctgtgagctgtattgtggagaggctcatatggcagaaaatgga<br>gggaggccactggccaacagccagcaaggaatagaagctcttagtcccacaacccaggaggaaccaaatcctccaacaaccacatgaatgttcttggaag<br>tggatccttccttcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	468	141	NA	intergenic
0	chr14	26147115	26147457	1000082	0	-	Ya5ac2389; RIP_Alu_chr14_025_02	TCTTTTCCTCAAAACAAATTCC	TGCGTATTAGTGAAATCATGCAA	SINE	Alu	Ya5	tctaacctgggacagatatactcatcaaaaattctggggccacaactcacatcttcacaaccagagataaaaaaatctttactgctgcactaatttctag<br>ggaagagtttttgtttgtttgctttctattttctcttcttctagaaattagtcccagtcctggaccacttgatatagtaataggaataaggtagattgtg<br>gaatgtgtcgattgcttacaccaatggagcaggcaatatgttagtaggcttcccaaaatcagatggttgaccaggatacaaattacccaagtattcacct<br>gagaaagagagaaatgaatgctgataaagcaaaataaatgtcctttgacatatcttttcctcaaaacaaattcctatatcagatta<font color="green"><u>TAAACCTTAAATTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>AATAAATTAAAAAAAAAAATAAAAAATAAAAAAAATAAATAAA</font><font color="green"><u>TAAACCTTAAATTC</u></font>atagacatgatttaatagtaatgtttcaatatgatgacatcta<br>tttaatactagaagaatttcagtctaattttgcatgatttcactaatacgcattttagttaaaatgatataaccagagtcatggttaaggctcagttgtg<br>ttcccccaaaatttatatgttgacatccttgctgtgtctttaatataaagacctgaatattgtcagtagtataatgtaattatccaaatcccaccgggaa<br>aacatttgggaaaaaataattgtttttttccattgatttctcaatatgcatattcctaatctcttacatctatgcattaccactgattttaaaaactacc<br>atttttatcacaggctgcctccacatcaccatttttcttccat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	168	NA	intergenic
0	chr14	66810645	66810941	1000083	0	-	9480;Ya5ac2390; RIP_Alu_chr14_065_01	CTCAAATGTTTGCAAAACCC	TTCCCCTGATTGAATTTTGG	SINE	Alu	Ya5	cgggtcttcggggtttaataacagcagtaacatactataccttttttccaaaatgatgcccaaatgatgtataaactttttgtgatgtaattaccaccca<br>tcaatcacttcatttctgaaatatggtggcttctgatgagatgagattgctttccacattctcattagtttacgaaggaaagagaaaaaaatcttgcctc<br>tgttagaaaagcaggtaaggatagaaaggtaatttggttacatattacacaaaaactgggtaagaaaggaaaaataatgtcattatacataggctcaaat<br>gtttgcaaaacccttttacatatatagttaagtttaatcctacagatctatgttttggtagcagtggatttatgcaaatcatttt<font color="green"><u>AAAAAATGTCCCCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAATGTCCCCAA</u></font>acgtaaatctagtggtttatatcaacatcccaaaattcaatcaggggaagtttctatagcctttctatatttaataaggcatttggca<br>tgtttttcatagattaaaaatgctaataatcaatataccaaaaatagatattcttataatgtttgatgagtcataattattgataggtaaacgtgttgaa<br>attgattattgcaacattaccctatctgttgctaacttatcctaaccctagatagatagacagacagatagggttattgctctctctctctctctctcta<br>tatatatgtatgatatatatataagatgtatatatgatatatataagatatatatatatatctaaggctgagaaggagccatgaggaacagtaagtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	468	172	NA	intergenic
0	chr14	87555902	87556207	1000084	0	+	Ya5ac2410;Ya5_432; RIP_Alu_chr14_086_01	CCCCAAACCAATCAAGTAGG	GGCTTTTCCACTTCATGACAA	SINE	Alu	Ya5	gttaatgtattatggcaattctaaggtgtaattatcttttaaaaatatatttttggttctgaaagatgcacatacatagtaatacaaagagttattagag<br>actttttatgttctctgcatcgttctaagtactcttcattagcttgtttagttctcaatacaactctgtgaaatagagactattatttattcatattttt<br>tggatgacagaatggagagacaggagatttaatatatggccagggtcataaagccagtaagtgatagaaccggcatttgaacccaacccaggtattctgg<br>ctccagaatccatctttttattctctacatttaatagattagtcatataaatgttgggcttttccacttcatgacaatgagattt<font color="green"><u>AAAAAACTAATGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAACTAATGGTC</u></font>agccatataactgacatgtcctacttgattggtttggggtgtgaattaaatcacatgtcttttaattaccaactaccat<br>aactcaacgcccttatcagaccacagaaagacatccttcctttttctctccaagtcaactccattccctaaggatgcatactcatacaaatatcagtctt<br>gatcagggttcccttttgagctgaaataagggaaggagactcagtgctactaaaatccccaccaggagctggttatttcagaacagaagtcgtagcttat<br>cctgctaccactgtgaaaaaaactgtgtgtcaaaactgaagaaccgtggccattgacaaggcgtttatcatggtggtaccaagtgagaacctactaggac<br>caactg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	472	151	NA	intergenic
0	chr15	39267017	39267358	1000085	0	-	Ya5ac2434; RIP_Alu_chr15_037_01	GTGCCCCTAGGATGAAAACA	TCTGTAGGCTGAAAAACATTGC	SINE	Alu	Ya5	tcttagattcctctgcctcttgagtcactagagctatttgactaaggggtgggcaaaataaataccagtctatcatttggcatagaatctttgggggaac<br>atagttccgtgatgtgtaataaggtttgtgtgggataggtgagtagagttgctccttaatttaccatggcagagagagggaatcaaggacagagaggtgg<br>tggctggtataagagacctggaagaaagagtccctccttgaaggtgggcatggcgatgaaactgcccatagccaagtgtgtatttcgccactaagtaagg<br>ctaatggccaatttgggatgaggagataaaaatgatctataaagtgcccctaggatgaaaacatatggcctatttccaagcttaaaaa<font color="green"><u>AATAAATTTTTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAAT</font><font color="green"><u>AATAAATTTTTC</u></font>ttataggcccatataaatgatttagcaatgtttttcagcctacaga<br>tataaaatcattttaataatcacaatcagcctcatttttatcccatggattgggataatatagaatagtgcattcccaagtagcaaggataagtattgtt<br>ttgtcaaactgtcttagttgtgcatctgtgtgtgtgtgtgacacatggacgtgtgcacagagacacagagagtcggacaataatataaaatgcatttctt<br>actcaagttactctcagaaatgtttgaaagccacgcctctatggaaatcttcagttattttttgttttgttagccatggcatttgtaaacatttctgaaa<br>attttcctggcttacgtgtaaataccctatttgtttctaaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	457	105	NA	intergenic
0	chr15	56363838	56364142	1000086	0	-	Ya5ac2456; RIP_Alu_chr15_054_01	TGTTTTTCCTTGCCACACTG	ACAGCCAGTCTCTTCGTGGT	SINE	Alu	Ya5	ctttaccccacattatatacataatagtctcagtctattcttattttcaaggtagtattaagtgtccatatttatcaagccacattcaaggaaatcatgt<br>cttaactattttggatgttgcctctccttcaacttgtacatgaaactccagcagatttaatattggcatgcatcatctagtcaaacctctcacatgttct<br>tcaaatcaatcaaatttgggattctcaacattttctgtgtcaataaaaggaatggaattagtagattcgatgaataactgtttttccttgccacactgga<br>cttccagacgccatttggattgggtttagaagatggggaagtttagaagatgtttcttggcctgagtctcttaagaggagagatgtag<font color="green"><u>AAGAGAGAGTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAGAGAGTAA</u></font>gaccacgaagagactggctgttgactgcagggcaccaacagccgccttggtggtggcagtagctggatttggggcagtcgaag<br>tactctgggaggagttacttgaaattgttacaacagttgtttgattggaataaatctgcgtgggtaggagcagtgccagcagcagcagccccagcccaag<br>cctggccaccactgctctgcccacgtcccctccgtcggtgtgcagcgtgtctggctggatgctgggtgcttggagaactgctcgctccaggagggcgcgg<br>gcaaggacgataacaactctttatcagattttcttttgcaaatattttctcccattttgtggcttaccttttcgttctcttgacaatctttttcagataa<br>cagaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	459	142	NA	intergenic
0	chr15	93515799	93516100	1000087	0	+	pAlu15-91102932;Ya5ac2458; RIP_Alu_chr15_091_01	TCCCCAACCTTCCTACACTG	GGTAGCCTAAAGGCATGCAA	SINE	Alu	Ya5	ctttaagatgatttttaaaatatggatttgtagagattagggaagattaaaatttgtgtttcaacataattattggaatgtcttttaaatcttcagtccc<br>tcataaggagcagtgggaagttgattttattagacaaactgttgacaagacttcgagaaagggggaatcgagtgcttatcttctctcagatggtgagaat<br>gttggatatcctggctgaatacctaactattaaacactatcctttccaggtaaggtgatttcagtaattgctgtggggggaatcaatctctctctccgcc<br>tcccctccccaaccttcctacactgggttgtatgctttgcttgttaaagtaggaagtaagagttttcttgtttcaaagaagttaaggtt<font color="green"><u>AAGATTCCAGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGATTCCAGG</u></font>agggtcttaatttttacttgcatgcctttaggctaccatatgaaagtggtcatgaggagacgattctttttttgaaggtgggtgggg<br>aggattagagaaagtcaaacggggcaagataaaaaaaggatgtcagatggcatcttattgcatgtgtatggtgaaagtagagaggaagtaagtgtgagct<br>caattccaggagcccaaatcctagaaggagagggcagtatcagacattccccccaaaagttgaccctggctgtgaggctgggaacatagcagaacactgc<br>tacttaaaaccttgctactccctgaagtaagtgatgatggcttcccctattttctgtggagttccttaactggagttactgtcttcacacagttatctcc<br>ta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	445	132	NA	intron:CHD2:NM:001271:19/39
0	chr16	58290920	58291220	1000088	0	-	Ya5NBC57; RIP_Alu_chr16_056_01	GACGTAAAGAGATGTTGTTAAGTGAAAAAT	ACTGTAGGAGGTAAATGGAAAGTCAACAGA	SINE	Alu	Ya5	attagtggggaaataaataggcactcttattatatttctgttattaaaaaaaaaaaaagactttatatttccaagcctgagtattggggggaaaaatgga<br>aaaaaaaataaagaagatattataaagtcaggtatggtgcctgtagtcccagctgctcaggaggctgaggcaagaggattgttggaggccagaagttcga<br>ggctgtagtgtgctatgattgcgaccgcgaatagccactgcactccagcctgagcaacgcagtgaggccccatctcttaaaaataaaaaaaaagatgtta<br>taaaatgaaaatatgtattgacgtaaagagatgttgttaagtgaaaaatacagtttacaaaataacatgatactatttttgga<font color="green"><u>AGAAATTCATATATGCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AGAAATTCATATATGCA</u></font>tagaaaattatctaaactgtaggaggtaaatggaaagtcaacagaaattacctctgagtggtaaattgtgaatgttttcaaa<br>tgttcttttagcttaactgtatttttcaacattctacaacatagattgccttgaaataagaacacacacacacacatattactataaaaaataaaatgga<br>atggtatctctagccagactgcaaatcatcctagttcagactttttttctgaacaccaagaggcaaaagcattttcactggccggcctcaggctccagcc<br>ccatcatctccacatggtagaacatcaacccacctgaaatgctactttcaacacattgctctcctactcaagtatcctcagtggggtccagctttctaag<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	444	126	NA	intron:CCDC113:NM:014157:3/9
0	chr16	19506336	19506635	1000089	0	-	Ya5-MLS63;Ya5_4532; RIP_Alu_chr16_019_01	ATGAAAAGGGCCCTGAAATC	TTGCAGATGCCTAGGGAAATA	SINE	Alu	Ya5	ttgcatgccaccgtgcctaattattaaaattttttaagggatggggtctcgctatgttggtcttaaactcctggcctcaagcagtcctcccctcccacct<br>cagcctcctgagtagctgcgattataaacgcacaaaaaataattgtaacaaaatgtttcattacctactgttttaagtatttaaaaacatagaaacaacc<br>caaatatccaaatatgtacagaattaaacatcgttcaagatatagtatttagtggtgggctgcgggggagggaagttatgatactatttgtataatatag<br>cctcacttttgtaataaacaagtaaattaaagtgttggtagatacaggtatgtttgcagatgcctagggaaatagatttgc<font color="green"><u>AAGAATAGACACTGAAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAATAGACACTGAAGTA</u></font>ttcatagtgagatgagatttcagggcccttttcatctcagtgggatctacttctgtattatcggggttgtgaaaaacaagc<br>gtgcaagttccatgagggcgggggctttgttttgttcaccgtaaccccagcacctagaaaaagtacaggcatgaaaagtgctgaaaaaatgaatattact<br>tttttttgagacagagtgccactctgtcacctaggctggagtgcagtggcatgattttggctcaccgcaacctccacctcctgggttcaagcaattcttc<br>tgcctcagcctcccaagtagctggggctacaggtgcgtgccaccacacccagctaacttttgtatttttagtagagacagggtttcaccatattggccag<br>	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	401	80	NA	intron:TMC5:NM:001105249:19/21
0	chr16	25623564	25623861	1000090	0	-	Ya5_531; RIP_Alu_chr16_025_01	GCAAACACAGTGCCACAAGT	TGGGGATGTGACCCAAGTAT	SINE	Alu	Ya5	ttgatatccaaatatatcaagatttctcaaaaatcaatatgataaaacactaaaatttaatagaaaattgaacaaacaatataaagagacaatgcacaaa<br>atgaagaaatacaaattaaaagatgtggaaccttaatagtaatcccccaaaatgcaaaataaaacagtgatgtttcatggagtttattattccaatacaa<br>tagcaatgtttaggcaatacagttgagcatccctaatctgaaaatccaaaatctaaatgttccaaaatctgaaaatttatgagggcaaacacagtgccac<br>aagtggaaaataccacacctgacctcaagtgatgggtcacagtcaaaatgcagtcaaaatttgatttcattcacaaatttgttagaaaaaa<font color="green"><u>TGTTGTGTA<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAGCCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TG<br>TTGTGTA</u></font>aaactaccttcaggctatgcatataagacatatatgaaacataaatgaatttcatgtttatacttgggtcacatccccaagatatctcattat<br>gtatttgcaaatattctaaaatgtgaaatttgaaatccaaaacacttctagtctgaagcatttcagataatggatactcaacctgtattaagtgcctgtt<br>gatgagccttttcataagctgttggtagatcaaactggtaatttttccagagggcaattcaatagtaccttcatttaaaaaaaaaggaaaagaaaagagg<br>gacaggtgcggtggctcacacccataatcccagcactttgggagggtgaggagggcagatcacttgaggtcaggagtttgagaccagccgggccaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	502	195	NA	intergenic
0	chr16	16573811	16574097	1000091	0	-	Ya5ac2480; RIP_Alu_chr16_016_01	AACCACACCAACCAAATGTGT	GCATGTGAATTGACTGCTGAA	SINE	Alu	Ya5	gtcccagctacttggcaggctgagatgggatgatcccttgaatctaggagttaaaggctgcagtgagctacgacttaccactgcactccagcccgggtaa<br>cagaacaagaggctgtctcaaaataataataataataataataataattattattattattattattattattattataatttcatttaaaagaaaaaga<br>aaacaagaacccagctttacaactacaaggtaagtcaccagcaactgccatgaggacccattgtctaaaccttttaatgtaaaataaaactacattagaa<br>accacaccaaccaaatgtgtagcttcttcagcctttccttatttttctaaggttgtacaaaactattgtatttacaaaaatggcac<font color="green"><u>AAAAGTGAATTCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCGGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAGTGAAT<br>TCAG</u></font>cagtcaattcacatgcatacttccctcacatcttcaacaacaaaaggtattctaactctaactctacagagcttggcagttttcaggagtactggg<br>gacggattttgcaggatatatctctgtattagtccattttcatgctgctgataaagacatacctgagactgggcaatttacaaaagaacaggtttattgg<br>acttacagttccacgtggctgtggaggcctcacaaacatggtggaaggcaaggaggagcaagtcacatctgatgtggatggcagcaggcaaaaagagctt<br>gtgcagggaaattcccatttttaaaaaccatcagatctcataagactaattcactatcacgagaacagcacgggaaaaacctgtccccat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	421	131	NA	intergenic
0	chr16	72753299	72753597	1000092	0	-	12465;Ya5ac2525; RIP_Alu_chr16_071_01	CTGAGAGCTCCACGAGGGTA	TCCATGGAAGAAGCAACACA	SINE	Alu	Ya5	ctccagttccttgtctctacactagccatgctggcttcctttctctgtcattcccagtctttcttgtcccagggctttacacatatcggtacctttccct<br>ggaaggctcctccctccctgctttacttttccttcaaatatcacctcatttatcacttcattaagaaagccttttctgactagatcaaattttcctgtta<br>caaactcatgttcctttctctcatagaacttattacagtggcaggtttacatttattgtgtcatttttaaattcatgacagactcttcaaatccactgag<br>agctccacgagggtagggaccatgtctgtttttgattaccactgtattctcaaaaggtagcagaatgaatggaaaaagtaggagtttaacaaac<font color="green"><u>ATCTAT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>A<br>TCTAT</u></font>gactgaattatgaatgaatgaatgctggggaatggcagccaatggtataataagttaaaagatgtatgttgtgttgcttcttccatggatatcaa<br>acacccaaattccaaaggttatacacagtgaacaaaaatgaatgacagggattgtaaaaatgtgggaggtataaagtacttcttttaggttgataaaaaa<br>atactgcccccccaaagaaaaattgttatttgaaaatgatagaattatgagtgttatttgtattatttttgctcagctaaattttctaatattttccata<br>atagtgtattaatattgtaagcatgttattttttactgcaacataaaatcattctggcttcagtgcagcagaaaaccaaagtacctaggaggggcagca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	499	194	NA	intergenic
0	chr17	61565901	61565902	1000093	0	-	Ya5NBC102;Ya5ACE; RIP_Alu_chr17_058_01	TCCCATTTCTCTAGACCTGCTG	CCCATAACAGGTCTTCATATTTCC	SINE	Alu	Ya5	acacagccaggctctcccaacaccacattacctgcctcctccagggatctaccttttcctaggcttggggtttcacagcacctctttgaggaaaatgaag<br>ggacccaagtgccagtgatgttggcagcagggactcaccattgagccgggcagcctggttgatgagttccacgtatttcgggtaaaactggaggatggct<br>ctccccgccttgtctcgccagccctcccatgcccataacaggtcttcatatttccgggatgtggccatcacattcgtcagatctggtaggggtttgaatg<br>ccttgagctccagcccttagctcacctctgcttgtaaggggagctcagagaatttcagagctggaataaaattggcgaaaccacat<font color="green"><u>AAAAGTGACTGTAT<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAGTGACTGTAT</u></font>aggcagcaggt<br>ctagagaaatgggagaaaggatgggagtggtctccagcagtggcttacagagtccccggcctggggcacatgctgcagacacctgcagggcctcagcagt<br>cctgtgaggggcgtgcttgagtctctctcctctcctttttttttttttttctttctgagacagggtctcactctgttgcccaggctggagtgcagtggcg<br>ccatctcggctcactgcagccttgacctcccaggctcaagcaatccttccatctcagcctccctagcagctaggactacaggcatgcaccaccacatcca<br>actaattttttgtattttatttgtagagacggggtcttgctgtattgccctggctgggctcaagcgattctcatg	Other	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	483	194	Hypertension	intron:ACE:NM:000789:15/25
0	chr17	14747551	14747853	1000094	0	-	Ya5NBC120; RIP_Alu_chr17_014_02	GGACCACATGACTGAGTGTAAAGT	GAGGTGGCCTCTTAACCATAATTC	SINE	Alu	Ya5	accatcctgcagtcttggctgagcaccaatttgccagctatgagagtgggccatcttcacagtggatcatctgacccccagtcaagctgctccagcttat<br>gctgcatgtagactggactagcagtcttcacatagtccttcccaaattgcagtgtcgtgagcaaaataaataattgttgtcttagcctgaagatctgcga<br>tggtttgctactcagcaatacaaaactgatggaccacatgactgagtgtaaagtatatatttgagcaatgaaaataagatgggtgagtggtattgggccc<br>aattatggataacccttatgagggaatcagatgtgttctacttggcaatattaattataagagatataccagatggaggaggtt<font color="green"><u>AGAAATGACATTAAGA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAATGACATTAAGA</u></font>gaccagaattatggttaagaggccacctcattaactccagcatgagttgataaagtctagcattaggtctatcatggtaga<br>aaaaagcagataaggcagttgagacattaaaaattaccaatagtacacattttctgaataaaaatgagctatgaggttgggattaacactgctgagtctt<br>tcagcttttttttttgagatggagtctcattctgttgccaggctggagtgcagtggcacgatctcggcttactgcaacctccacctcctgggttcaagcg<br>attctcgtgcctcagcctcccaagtaattgggactacaggtgcatgccaccacgcccagctagcttttttgtatttttagtagagataaagtttcaccat<br>gtt	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	518	199	NA	intergenic
0	chr17	12196593	12196896	1000095	0	+	pAlu17-12139548;Ya5NBC160;3797; RIP_Alu_chr17_012_01	CTCAGCTGTGCCTGATACTCTATAA	GCCTACTGGATAAGTCACACATTTT	SINE	Alu	Ya5	tttcactgtgttaggcaggttggtctcaatctcctgacctcatgatccacccgcctcggcctctgaaagtgctgggattacaggcgtgagccactgtgcc<br>tggccctccaattttattaataaattatcacccaggcagcgtcttaggcaattttctggttgtccatgagacactctttaagctcagaattttaggccat<br>aaaatatagttcaaacgatgctataaagagttaagagagtttccaaagaatgttgggtagaccttgagaaactatttagctcaggcgtgcaatgtttgtg<br>tgacttctcttgctcagctgtgcctgatactctataaatatgccttatttatcttcttcatattttcattatttaatgttcttcttt<font color="green"><u>AAACATACTTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAACAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCGGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA<br>AAAA</font><font color="green"><u>AAACATACTTTTG</u></font>gggctcctatattgcccagttacagctctttttaagtttttatgttccaatataacttaaaatgatttcagggcctttggtaa<br>tcaatagtgttatcaaattggggggataatatatcaaaaatgtgtgacttatccagtaggccaagtattgaagcatgggcttccatgggacagcagttat<br>tagcccatcaggagggaaaagccattgtaactttccttatgcttagggaatcctgagtctcatcttcccttatgcctgtcctactagaattctatggttt<br>atatcataatcttcctcaagaagattgggtctttttgctcaaatttctaaaatttgaaaacttaacatccataggactgttttttaaacgtgaggatttt<br>gatt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	551	234	NA	intergenic
0	chr17	64930555	64930856	1000096	0	+	Ya5_421; RIP_Alu_chr17_062_01	GAGGCTGTGACTGCAAAGTG	TTCGGTGTTCCAAAAACAGAC	SINE	Alu	Ya5	ttgaaaattggcagatttgtctcttcagtacctgctatagagctgaggcaggaagggcctgacatcccgtttacattgacaacaacaaatggtgtcagca<br>ccatgctgaccactgacactgatgacattccttatctcagcaatcttaggaggcaggtcctggatcagttcccatatttggatgaggaaatgggagccca<br>gagaggtgaaagaccttgcccagggtcacacagctcatgggtagcacagctgggattcaaactcaggaggctgtgactgcaaagtggatgttcccgctgc<br>agcaacaggcagccttcccaaggatcacttctcaattgtaggatgagtgggcaaaagagccagtgatcctgcacttctgggcaggt<font color="green"><u>AAGAAATGACATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAATGACATCT</u></font>gtgcaagattagtcatggcaagtctgtttttggaacaccgaagtctgttctcatgctgctaataaaaacataccccagactggg<br>taattataaagaaaaagaggtttaatgaactcacagttccacatggctgaggaggcctcacaatcatggtggaaggtgaaggaggagcaaaggcacatct<br>tacatggtggcaggcagagagagggagcatgtgcaggggaactcccctttataaaaccatcagaactcgtgagacttattcactatcatgaaaacagcat<br>gggaaaaatccacccccatgattcaattaccccccaccaggtccctcccatgacacgtgggagttattacaattcaaggcgagatttgggtaggaataca<br>gc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	177	NA	intergenic
0	chr17	67087667	67087962	1000097	0	-	pAlu17-67552076;Ya5_435; RIP_Alu_chr17_064_01	CTGGCGACTAAGGTGAAAGC	AAAAGGTAATCCCTCTATCCTCTTG	SINE	Alu	Ya5	ataagatctgggaaagaaagggtagtgctcaatacatacttggctgatcaattgattcttaaaacaaacaaacaaaattatccttattccttcccatttg<br>ccagtaaaaaaaattgtaaaataaaataagtccatcacaataaaaatacacaatctcagaaaagtcatttgtttggaatggggaagaaatggagcaggaa<br>ggacaatgagaaagctccacagtagtctggttgagagacagtatggattgtttggtttttttttataatagccatgtaactttcaacatatacaggtttt<br>tattcattagcaatattgttaccttagccataaaaaggtaatccctctatcctcttgtcttggattaaatttaataatacacgtc<font color="green"><u>AAGAAGTCTATTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>AGTCTATTTGG</u></font>tcattttagctttcaccttagtcgccagtctttattaagaattttctattggggatcataatgtattcttgttaacaaaagcttcttcc<br>ctattgtctctaaaaggagaaactatcattgtcaaatgggtatatctgcatatgggaacattatgatatacatcatgagaacacctgcatcttaaatgtt<br>ttacaaaatatcaatgggttgagtatgtctgatacaatatatttgaacttgccttgtaggcctccaccatcatgttttccatcactttaatcaatcattt<br>tgacctaagtatattgattaccaccatggtattggttccttcatataccttgcttggatttaaaacttttttggaagtggtaagaaatgttaccaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	407	96	NA	intron:ABCA6:NM:080284:25/39
0	chr17	13220499	13220804	1000098	0	-	Ya5_454; RIP_Alu_chr17_013_01	AAGCCTAGGACACACGCATAA	TGCTTGGCACTTAGTGTTAGGA	SINE	Alu	Ya5	aaacaacttctgcttgcaaaaatggacccactgtccacattttttgaaagcagcacaggtaaagaacaaagccttaagctttcactccatcgagtcaaag<br>ttcctagcagtctaagtgcagatgcattataatttgtgggttttgttgtttgtttctagaggatccctccagaaaatcttctttatcttcttcatgacta<br>aacttccacagggcctgtcttgtgtctcataagcagcttccatctttctccataaacacctcttgtattttcaaacataatggcgcatctcccacgaaaa<br>actgaaagacaaatagggatatgtaagaagaaatgcttggcacttagtgttaggattttcaacactaagttgttcatgt<font color="green"><u>AAAGATTCTGTCTTTACCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AGAAAA</font><font color="green"><u>AAAGATTCTGTCTTTACCCTT</u></font>tcattatgcgtgtgtcctaggcttttcaagtgaacatcagcatacaagttatttgcttagaacagagctgtaa<br>gagtaaaatgcatgaacacagtcgaagcatctggttgggaccatggccacctgtcagcattggatgctccctttggtgtgtttcagtgaaaatgaataaa<br>ccgcatttccttttaagccactgcattgagttgggtctactttttatagcagtctagtcttaccctagcaaatacattctctcagctcaatgtatattca<br>tgtgttgcttaacaacaaggatatgttctgagaaatgtatcctgaggcaatttcttcattgtgcatagcctactggtactaggctgtgcacaatggtcta<br>acctat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	59	418	91	NA	intergenic
0	chr17	80589159	80589460	1000099	0	-	Ya5ac2539; RIP_Alu_chr17_078_01	AGTTGACAGGTTTTGCCACC	CAAGACAGGTAACGCAGCAA	SINE	Alu	Ya5	ctcagctcctgagtggctgggactacaggtgcctgccaccacgccggctaatttttgtatttgtagtaaagacagcgtttcaccatgttggcccagatgg<br>tctcagtctcttgacctcatcatctgcccgcctcagcctcccaagcattaaagcttttagtatgctgtcttggagttgacaggttttgccacctcttgaa<br>atgtgaattcaagtatttcatacattttgctgagttagcttcctagggtgttgtgtgctcagcctttatgaaacagtgaacatgatgacagtaaactgag<br>agaatttggaaacctagcactcactatttttttagccagtcacctttctcatttctgacgatagttagatataaattgctgatt<font color="green"><u>AAAAATGAGTCCTGTA<br></u></font><font color="red">GGCCGGGCACAGTGGCTCATGTCTGTAGTCCCAGCATTTTGGGAGGCCGAGGCAGACTGATCGCCTGAGTTCAGGAGTTTGAGATCAGCCTGGCCAGCAT<br>AGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCTTGTAATCCCAACTACCTGGGGAGGCTGAGGCAGGAGAGTGGC<br>TTGAACCCAGGAGGTGGAGGTTGCAGTAAGCCGAGATCGCGCGACTGCACTCTAGCCTGGGTGACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATGAGTCCTGTA</u></font>ttcccagctacttgggaagctgaggcaggaggatcatgtgagcccaggagttcaaggctgcagtgagctgtgattgtacctg<br>tgaatagctactgcattccagcctgggcaacacagtgagatcttgtctcttacaaaaaatagaaaattgctgcgttacctgtcttgactttctcttttct<br>tttttattgtaaaatatacatattaacttgtaacattggtctttttaaaactatcatttcagaatttctagaaggaggagttggccatgttgaaatgtta<br>tttcgctgcaactatttagctttagttggtggtggaaaaaagccgaaataccctcccaacaaaggtactgtaattgtgtattgaagaatcatgcctcacg<br>tg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1018	713	NA	intron:WDR45L:NM:019613:2/10
0	chr17	68159940	68160257	1000100	0	+	Ya5ac2571; RIP_Alu_chr17_065_01	CCACAAATTCTTAAAGCCCA	GCCACAAGCTACGAGGAAAA	SINE	Alu	Ya5	acagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcagagtgttccatggaagtcag<br>tgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaatgactataaatcatgctgctataa<br>agacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactagattaagaaaatg<br>tggcacatatacaccatggaaaacccacaaattcttaaagcccacatctgaaaatctagacattcaagtatgtacattttctttc<font color="green"><u>AAGAGTATCATTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTATCATTACA</u></font>gtgttgttgacgttactgaaaatatgttttgcattttcctcgtagcttgtggcatattccataaata<br>tctacaatagtgattagttttggctgtctgaagtttgtgttgtttgttttaattttttgttttgtttttataagttctggaaaaagtcaagttgcatgac<br>tctcatgatcttccaaagatgtattactaaagcaaagagacattcttacaggtgttttaaacatgagattcagtttgctaatggtggcacctctcactgg<br>aaagcatttcttactgtgctgtagagggtgactatggatgctggtggcagtctcactttccctagtggctactgaacgtgtttgtgtctcctttagaacc<br>aatagtttctaatgaata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	462	136	NA	intergenic
0	chr17	74046825	74046826	1000101	0	-	Ya5ac2577; RIP_Alu_chr17_071_01	GCTTTTTCAGCATGTTTGCTT	AACCACACACTCACTCACGC	SINE	Alu	Ya5	acgtctgtggcgaaaagaacttagtgtgatatttaggagaactgtctttttggtgggtattgattagtcttttttattatttccttgtacctaaaagaaa<br>caatctttgagttgggtcacatttgtaaaaggtaattgtgttggcatacagtagagcttgacaagtttgttctggaaggaaaagataaggaaagttctgg<br>tgtgctgtgcttcagtgtagagtgtcccaagtccagtctgtaaggcccctcaaggggtgccaggtcctgagcagagggtgaagcgctgcagggaagtagc<br>aggaagctgtgctgggaagagacgtaaagcctttgctaagtctcagatcagttatgcagacagctttttcagcatgtttgctttt<font color="green"><u>AAAAATAGAACTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATAGAACTCCC</u></font>ctttccatatgaataatgaatgactaaggctatgagaaaccattatatggtagagaacagtaacaattaaaatgatatctggt<br>gtggcgtgcgtgagtgagtgtgtggttgggggactccatgtgcgattttgctcccctcccattaggtgactatggtttgctcaaaggaaagtctcttact<br>ttgatctgcccttgtttaggctgaaagcgaagaaactaaggagcgcctgtttgaatcaatgctcagcgagtgtcgggacgccatccaggtggttcgggag<br>gagctcaagccagatcaggtaggaccctcagccgagccctggttcttgctctgggcgggtccaggtcagcctgtgtccccttctcaggtggaccccagtg<br>ct	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	465	148	NA	intron:SRP68:NM:014230:8/16
0	chr18	69896775	69897075	1000102	0	-	Ya5ac2584; RIP_Alu_chr18_068_01	TTCCAGAGATGACATGGACA	AAAAAGAAGCCTGGAGAGGG	SINE	Alu	Ya5	gaagtaataaaagtattcatttgaaaactgcctttatgagtaaatgttacatttaatgattgtatttaaatgagtgtgttgaagtaaaacagttcttgtg<br>acgaatacattcagggtgttaagacaaaataaggttccattatttagggtctaagtgagaaggaatagagtccctaagaaaagtctccatggagtttctt<br>catgaagtcctttgggcaatgacatcttagtaacctggttacaggaatgcttaaagcaatccctaatgctataataatgacagtgggttttctttccaga<br>gatgacatggacatcactcttagctttaggacacaatttatctttcccttccagtagtaggttgttaccagatttgaaataaaat<font color="green"><u>AAAGAGTCAATTAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGAGTCAATTAGT</u></font>acagttagtcctggattttctcaataactatacatacttggaaaatttattcaccctctccaggcttctttttttctccttgcc<br>tgtgtaaaatggaataatctctaaaaagatttgtaggtctaagattctaagttacaaaaatgttcacgatgctattctaaatcacaagtgcaacatcagt<br>acaggtccttcgagaagcatacaccaagatggaattaaacttgcaagaaatatattggggtattgccctaggaaatgaaacaaggagggaagtagagtag<br>gctacattagctgtcagaccacgatgctggtcagacttctatgcaggaaagtgggattgtaggttgtaggatagttctaataaaatattggcaaggctat<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	496	180	NA	intergenic
0	chr18	11971930	11972237	1000103	0	+	15175;Ya5ac2613; RIP_Alu_chr18_011_01	TGGGGTTGGCATTTTTCTTA	CTCTGCTGCAGCGTGTCTA	SINE	Alu	Ya5	ggacaaagaatccagttttaaaatacgagcgggcagagccggggactgtggtgcattcctgtgatcccaaatactgtggaggctgaggtaagaggatcct<br>ttgagcctagcagttcaagaccagcctgggaaacatatggcgactctgtctccaaaaacccaaaatcaaccaaaacaaaacaaacaaaacaaaacaggca<br>ggcaggagaatttgtcagtatatttccacctccatttatattcaatcccaggaaccttcctcatgcaggcagtgagatttgaggcgtaaattaccctgaa<br>agtgggagtggggttggcatttttcttaagaactgggaacaaagcatttctccttgggttaatgctgacaaacgaaataatgcaatt<font color="green"><u>GAAAAAGAAATAA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAAAAGAAATAA</u></font>tacggatacggcagggggtatatgtactttccccttaattttgccgcgaacttaaaagtatagaaaaaaaatagacacg<br>ctgcagcacagcctgtgtctctcctccgccccgtagacggaagtgcagaggggctggagggacgaggctagagcgcggcaaagcaggcgggagaactaga<br>tcccagtccaggtgaacatccaggcccacgcgcactcccctcctgcagaggcaaaggtgagggtgagggttgtgccagaaggtgacttttcctggaaacg<br>tttagggcccgggccgcattcctgcgggtcttgggtacaggcaagctcctggtttccttcctcaggacacctgcatcgggggagtggcgcggcagccgaa<br>gagagaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	182	NA	intergenic
0	chr19	51457477	51457784	1000104	0	+	Ya5NBC150; RIP_Alu_chr19_056_01	AAATGGAGACACAGAGGTGTAAAGA	CCCAAACTGCATATTTAAAGGGTAG	SINE	Alu	Ya5	ctgcttgttcgtttgtttatttatttatttgagacagagtcttgctctgtcgcccaggctggagggcggtgatgtgatctcggcccactgcaacctccgc<br>ctccagggttcaagtgactctcgtgcctcagcctccagcatagctgggattacaggtgtgccccacgacacccggctgattttttttttttttttttttt<br>ttttagtaaagacagagtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgattcacccacctctgcctcccaaagtgctggaattac<br>aggcatgagccacggtgcctggcccaaactgcatatttaaagggtagagtctgatggctttaggtacttgtcacatcagcatagtc<font color="green"><u>AAGAAGATGATCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAGATGATCAT</u></font>agacaccaccctgaaaactgtgcttctgcccctttgcgtgtatctgggactctgttaatctctctttctttacacctc<br>tgtgtctccatttgtgtctttctctatcttctcttttctctctgactctgtgtgtccctgtgtcccaggctctctgtgtgttctctctgtgtttctgtag<br>ttgtgttattctgtctctctctctctctctctttcttccccaccccttcctccttccctgtctttctgcctccctctccctgcattttaggcaggggaga<br>ctcaagccactttgcagagggagctctcaactccttctcttgccttcactctgggcccaggccgtggagcacaaagaggcagggacccagtctgggaatc<br>tgcaggtg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	491	169	NA	intergenic
0	chr19	20176730	20177026	1000105	0	-	Ya5_416; RIP_Alu_chr19_020_01	TGCATTCATCCAGCACTGTT	GCATAAGGCCCAGTCAAGAG	SINE	Alu	Ya5	caagctttatcctacataaatggaaatgcagatataataagcaaatgagataagcaaatcaatgaaataagcagattgatacaataagcaaattgcaatg<br>gaaagaggagaagggaaaagagatatatatattatgctcgccagactatggaggattcaccaccagagtgggaagcaacagtctgggctccagaatcaga<br>cactcatctatgcacagatgaggagaggtctcatgaagcttgggcacactctgggaccctagctctttggtaatgagttgtttggcataaggcccagtca<br>agagagtcgttcatgattgggctcaagcaacacaaaaaagtcaacttgcttttgcaattctctattgtttttcaacaactaatatat<font color="green"><u>AGGAATAGATTGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGAGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGG<br>AATAGATTGA</u></font>aatagagatatctccaaaacagtgctggatgaatgcatcaaggggctcacacaacctgttccaggacttggtgaccattggttgtgtcca<br>ttttcaattgagttcaaatttaatatttaacttttcctccacaaattttcctgtcttgatgaattggctctgtctaggcaaagggcaaggtgaacccctt<br>gggcagttacactactctgccttctgggttcaagtgattctcctgcctcagcctccatagtagctgggactacaggtatgcaccaccacacccagctaat<br>ttttttgtatttttagtagaaatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccacctcggcctcctaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	463	153	NA	intergenic
0	chr19	53820803	53821104	1000106	0	-	pAlu19-58496721;Ya5ac2662; RIP_Alu_chr19_058_01	CCAAGGGCCAAGTCTATCAA	CACTTGAATTTCATACCAGCCA	SINE	Alu	Ya5	aaactgtacagaccaagaggaagtggggcaacattttcaaagtgctgaaagaaaaaaaaaagctgccatccaaaaatattatacagcaaagctacccttc<br>aaataggaagaggaaactgtctttcccggacaaacaaaagttgacagcattcatcaccatcagatccagcggacaagaaatgctacaaggagttattcaa<br>catgaactaaacaccaattggcacacacacaaaaattgaaggcacaacacccactggtaaaatgaagtataaaaggaagcccagaatactctaatactgt<br>aattgtgccttgcagtccactcataactctagcatgaaacccaagggccaagtctatcaaaaacagtaatacctacagcaagctgtt<font color="green"><u>AAGAGTGAGGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTGAGGCAA</u></font>tacagaaatatatagatggagagcacataagtcaaaagtggctggtatgaaattcaagtgtaaagatgtttttcagtttttcttt<br>gtttctattcttttttgtgatctaagataagttgtcatctatttaaaataaatgcttgtatttataagatatttcattgttaattcttttgtttgtttag<br>ttctctgttatttcaagtaaattttaataaaatgagtggttgtgcttgcttgctcgccttagggatatgagaacacccaccccaaaatctctttctttct<br>aacatgatcaattggcatcgtcacatgataaagaaaaaaaaattaccctctactgatttagatcctgaacatctgctttttttttcttttttttgtgaga<br>ca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	435	120	NA	intergenic
0	chr19	23320804	23321105	1000107	0	+	pAlu19-23096752;Ya5ac2670; RIP_Alu_chr19_023_01	TGGGCAGAGTGAATATCCTTTAG	GACCTTGGTCCTTATTGTCTTCC	SINE	Alu	Ya5	gtgctatgtttaagtagaagcattgagaatgggcacaatatagttttgctttgttctctgtgaattttaagaagcaaacacctcttcaggtttttataaa<br>ctggcttcaagatgtaaagatattcttttgttgggtgcccagggtgatagaatgccctctgggcttatagtggagaggggttgtagcttggtaacaaggc<br>tgctgggtcttcactggggtccaactttagttgacttgttacaaggggcttgggtagttataattcccattatatttttgggcagagtgaatatccttta<br>ggactttgctctgtagggtagacactagggcaggtttctgcaattggttgtgcatatatggtgggctttatatcaaaatgtagat<font color="green"><u>GAAAATGGCTTTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>GAAAATGGCTTTCAC</u></font>tgggtaccagaaaggatttccccaggtctctgtgtgggtttccatgtaggtagagctgaccatgaactgtggctcaaagagct<br>ggaactgagtcatgcaagtgcttcggggaagacaataaggaccaaggtctgcagtcttgtctgtgtggctataaatgagtgtctttctccaggcctctga<br>aaaggcaggacctcttccagactttggctgggaagagttttggatggtttcagagtaagttcaaaattctcagtgggaccaagttgggtggataattttc<br>tggtctgtagccaagaacaggggtcctgttgtttgccacctgaatgaaagcctgccttctaaaaaggatgctcctcaatcttgggcattagcagagtttc<br>ac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	476	159	NA	intergenic
0	chr20	35815624	35815921	1000108	0	+	pAlu20-36453952;Ya5NBC148; RIP_Alu_chr20_035_01	ACAAGATGACAGATGTAAACCCAAC	AAGGTGTTGTCAGACTAATCTATCG	SINE	Alu	Ya5	agtcaggtcatttgtcctggaatattttccacattctgcctttgattaattgtatcttcatgatgtttttgaacatatttccctatcctttgtatccctg<br>taaactgatagttagctcttgaggctaaattatattcagggttggttttcttggtgaaaatatttcacaggtggtgctgtggacttcctattaatagata<br>cataatatctggttatttcacttttagtgatgatgaagttgtaaattaaggtgttgtcagactaatctatcgcttataaatagtatatagtagggatttg<br>ttttttcatccagtctgataatttctaccttttgattggggagtttattccatttatttttttattttgattctttttttatgttt<font color="green"><u>AAGATCAATCATTT<br></u></font><font color="red">GGCGGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GATCAATCATTT</u></font>atgtttaattatattgttgggtttacatctgtcatcttgttatttgtttcctattggcttacctgtttttccctctcttttcctgtct<br>tatttttatattttattttgttttattttatttttttgagacagggtctcactcttgtcacccaggctggagtgcagtggtgtgatctctgctcactgtg<br>acctctgcctcccgggttcaagtgatcctcccatctcagcctcctaagtagctgggattacagacgcgcaccaccatgcctggctaattttttgtatttt<br>ttggtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatttgccctcctcggcctcccaaaatgctgggattac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	505	193	NA	intergenic
0	chr20	37139271	37139569	1000109	0	+	Ya5NBC45;3071;Ya5_5642; RIP_Alu_chr20_036_01	TAGGGTAAGGAATATGTGCTGCTTTAG	GTCTCTGAACGACTATGTGAGCAG	SINE	Alu	Ya5	aactcctggacttaagcaatccacccacttcagcctcccaaagtgctagggttacaagcatcgagccaccgcacccagcctggaatttgtctttagttca<br>catattactgcattaaattcatttgtttttatatcagattcacactcttattttaactttataatatttactgatatttagtaggtctaatgtctttttc<br>tctttttccttctcttagaatatttatctcttcttgcctgtttaacatttcagatcaattttagaaccaatttttcaagttacaaaacataagcaaacag<br>aaggaaaaacctcaacgaaaccttctggggtttggattgtgtattatttagggtaaggaatatgtgctgctttagcaaatgaactt<font color="green"><u>GAAAATCTTTTATA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAATCTTTTATA</u></font>aagtctggagtcaggactggctctgctcacatagtcgttcagagacccagctggcagaggctctttcatcttcaacagatgactcca<br>ttagggcctcagtgttataagcaggattctcgtatctggctagcagatggggaacagagagcaaggaaaattttgtgggagggttttatgtgtcaggcct<br>tgaagtaatataaatcactgttactcatattccattagccacaactcagacacacaccacacttaattgcaagagaacagagaagaaaagagaaagtggt<br>gaacagctagccagactctgccgaagatgagaattgtattaagcttgtatttatatttaggaaacgctgatatctgatattgagtctgcctttcttttt	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	591	265	NA	intron:RALGAPB:NM:020336:6/30
0	chr20	14529082	14529382	1000110	0	+	Ya5_5672;pAlu20-14476982;2845; RIP_Alu_chr20_014_01	TTCAATCATTTTCACCTTTTGC	GTGAATTGCCAGCATTCTAATC	SINE	Alu	Ya5	aattaaagtgatggtaaaatagactacacctcttgataagaggagaggcaaagccacgtcgcaaaggggcttgtgtaaaaaattggaggaattattgggg<br>ccatatttggagacttggccccttcacattttgtatctgactttctcataagacttttatttcttcagagcaagggctatgccttcttcacgttttcaga<br>atcagagtatgaaaaatatttgctgtttcttgagtaaatgattactccatgatagttttccctctaccccaactgccaattataaactcagatttacatt<br>cagaatactggtgtgaagcatttctactatatctttttttttcaatcattttcaccttttgcatttatcttataaatctaacactata<font color="green"><u>AAATACATTATC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTTGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAATACATTATC</u></font>ttagttttttttttttagattagaatgctggcaattcactgggaagtgatccctggaagtattaaatgaacagaggagtgggagaag<br>taaaaaagggaatggatgaggctaaaaaaagggtgacaagcaaattaacctggagcaactggggttgtttctactggggaactctgcacgtgcctcggag<br>ctatcccacctgaagggtgagagcactggaggacatgaatttcccagaagttatggtgctccatgattacaggcaaagcaagcccactctagtggccaga<br>gagagccctcaggcaaagagacacatgttctagaagtcataccaacagcactgaatggtccaagtcatggagatctgggcagtgcaccagcaatgactgc<br>c	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	412	100	NA	intron:MACROD2:NM:080676:4/17
0	chr20	33115832	33116144	1000111	0	+	Ya5ac2704;pAlu20-33784411; RIP_Alu_chr20_032_01	GGTTCCTGTCCTCCACTTCA	TCCTCTCCTCCCAAGTCTCA	SINE	Alu	Ya5	aaaagtctaatttattagagccaaagcaagacctgaggaatctgtgtgtttacgaagcaccccaggagattcttatgatcagacaggtttagaaaattct<br>gctttaggggatagattctaatcagaagaggctgcagtgagagccacaggcctaagattcacagcagttctgtctccttccgaaggccttcccttggaga<br>gactgcctcagatcatgttttcagggctgtggtccttaaacccaggggtcctgtgctaccctgggagtagaggtagaggctggggttcctgtcctccact<br>tcagtcagagcacacacactaagaaccatcagttcatgtttctacattggttttaatttggaaaggggtttggccaattt<font color="green"><u>AAAAACTACCCTACTGGAGT<br></u></font><font color="red">AGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAACTACCCTACTGGAGT</u></font>ttacaaaaataacataaaccagtttatgtgagacttgggaggagaggagtccactgagacactgctg<br>ctgatagagcagcgtgaccagtgaaggaagaccaggaccatgcctgactcacctctgttcccgtgtcattcaccacaggccgcagagtcaggtcagtgaa<br>cgttaaatgaaccaaccacagtgggtgttgccatcagcccctttgatttggtaattcttgaggactgtgttgagaggaaataatcccaaaggaaaaaacc<br>tgaaatttttgcaagcatgttagatgccataatcagtagattaataattgttataatggctgggcgtggtgcatggttgctcacacctgttctcagcact<br>ttgggaggccatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	498	165	NA	intron:DYNLRB1:NM:014183:2/4
0	chr20	7274351	7274649	1000112	0	-	2716;Ya5ac2706; RIP_Alu_chr20_007_01	TCAACTTGGCTTATGTCTGAAAA	TACCAAAAGCATTGGCATCA	SINE	Alu	Ya5	aaacatcagaagattgctcttagggaacttcctgggatgatggtaattttctctaccttgatagaggtttgggttacacaggtctatgtatttaaaatat<br>gcttactattccattccacttcaaaagacatattgaaatgtagttgataatatgcttgctaaagtgtttaggggaaagcatcctgacatctgcaatttac<br>tttaaaatgtacaaaaaactaagatgaagtatagaaaaatggagggatcgataaatggataggtttgtgaaaaagcaatatagaaaaatgttcatgttag<br>agtctaggtagttgatatgcaagtgtttactgtaaaatttattcaacttggcttatgtctgaaaatagttgtataaaatgttggtg<font color="green"><u>AAAAATGTATTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATGTATTGTC</u></font>attcctttttttaaaaaaaaataaagatccatttgtattaataatcattctctttttatgatgccaatgcttttggtaaagttaggg<br>gcatcaaaatcattaatagatgtcttagtctgttcaatcttctgtagcagaatactatagtctaggtggcttaaataatagaaatttatttctcacagat<br>ctggaagctgaaaaatccaagatcaaggtgctgtcacatacggtgactggtgagggctgcttgctgatttatagatggcactttcttgctataaactcac<br>ttggagggaagaatgaggcaattctctagagcctcctttataagtgcactaatctgattcatgagagctgagccttcatgacctaatcaccttccaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	449	136	NA	intergenic
0	chr20	60526303	60526593	1000113	0	+	Ya5ac2709; RIP_Alu_chr20_059_01	CTTTTCCTGGGGCACAATTC	AGGCCTACAGCAGTTGCCTA	SINE	Alu	Ya5	cccaccctctccccttccccagccctgcaaccgcccctccacagccctgggccctccctcccacactctccccttccacagccctgggcccctccttccc<br>accctccctcccaccagccctgggcctccccctaccgtcctctcccctcccctagccctgggcacctccctcccaccctctccccttccccagccctggc<br>ccctctgtcccattctctcacctcccttagccctgggactccctcccagccctgggcccctcttcccaccctctcccctcccccagccctgggccccctc<br>ccaccctctcccctcccccagccctgggcacccccccaccttccttttcctggggcacaattcacatgtacactgacttgcataac<font color="green"><u>AAAAAACCACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAAACCA<br>CTCAC</u></font>acggttaatcatgggtgcagttgataattacaggcacaattaaccacttgctaattttgagggtgcgagcagttaattacattcacaattaggca<br>actgctgtaggcctgggaccggagtcctggtggggggacactccttgtaatcagactcccagggtgaggccctgtggtgggggtgagggtcaggtgatct<br>gcgaagcacccccctcccagcttcaagtggggagcttacaggcctagaggtcagggcctggcaaacgacctgaaaaatccagcttgaggccctttccagg<br>gagccccagaggccttctcttgggtcatttcccaggatgggggtcgctgtcactcctctgtcccaggaggattcagagaggtcagttcaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	166	NA	intergenic
0	chr20	19061431	19061729	1000114	0	-	Ya5ac2715; RIP_Alu_chr20_019_01	TGCTGTCTGAGTGAGATGGG	ATGAACCTTCGAAATGCCTG	SINE	Alu	Ya5	caccaaaagttccagatgagagagaaaggcagcccagacccaggagtaagagggggtcttgagaaatgattggattatggatttattttgtgggatagaa<br>aaatgataaaggagtcaaaatttgactccaaggtttggtgtatttgctaatgaaaagatgacattgccatttactgagccagggattcctgcagaaagag<br>agttttgggggtaggggagatcacaagtttggtttcagacattgttattgactaaatatttacattcccttcaaaatttatatgttgaaacataatcccc<br>catgtgatagtatttggaggtgaggcctttcagaggtgattgggctatgaggtcggagctctcatgaatgagatcagtgccctcat<font color="green"><u>AAAAGAGGCCCTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGAGGCCCTGG</u></font>agagctccctcagccatgtaaagatacggcaagaaggcaccagctatgaacaaggaaggggcccctcaccagacaccaaatttacca<br>gcaccttgatcttcaacttcccagcctccagaactgtgagaaataaatttctgttgcttataagccacccaggctatggtatttttttacagaagcctga<br>acataatgagacaaagatgtctctgctttgagatgattatttaacatccaagttgggatgtctagcaggtatttggatattaagcggcatttagtgagag<br>gtccaggcatttcgaaggttcattttatgtgcaggaggcacatgtgagcagataaacaacacagagcttctctttgttgcaacactgggttcaaaccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1180	867	NA	intergenic
0	chr21	24742247	24742546	1000115	0	+	Ya5NBC351; RIP_Alu_chr21_023_01	TTCCTCCCCTTTTTCCTGTT	TGTCAGTATGTAAACCCATGCT	SINE	Alu	Ya5	aatttcagatgttcaaacatgtattttttctttaatcaaggctatctagctgcatctactctattcaatatatatttgcacattcttaagatatcttcaa<br>ttaagcttataaaaatatgaatttacatatgcagcatgatttacttttcaggattgatcttttaaaatttgtacaaatttaatatcttataaatattgca<br>attttttcgaacactgccaaaatataattgatatcatgaaatattcatttaaattactcaaatatgtcaacaggcaaaaatacatttagtaaccactaca<br>tgtatagagaataaaaattccagtttggatgtgatgttatatgtcagtatgtaaacccatgctttaaatagaccattttgttcttt<font color="green"><u>AAAAAAATTATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAATTATCTG</u></font>tagttttctctgtggaaccgataatattagagataatttctcataacaggaaaaaggggaggaagtaaaaaggaagaaaagaagga<br>cggaagaaattaaggaaaacaaaagggaaaaaagagataacaaaagaaagaaaaaacacaagtatcctacacaagtatacagctcattgtactctagtga<br>gatgaatgaattatagatacaataacataataataatttttggtgtttatttgaaaagcaaatgctgcctttctctatatcagcttatgttggatatctt<br>attatcctaatcaaaagtcagtataacagaagagtagaaaggactactgaaatgtgactgagataaaaattatttaaatgtaaataaataataattaggg<br>	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	437	123	NA	intergenic
0	chr21	17522224	17522540	1000116	0	-	Ya5ac2731; RIP_Alu_chr21_016_01	ACCTCACTCAGAACTCAACGAAG	ATGATACCCTTTTCTCAGCACAC	SINE	Alu	Ya5	gggatagcattgggagatatacctaatgctaaatgactagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattg<br>tgcacatgtaccctaaaacttaaagtataaaaaaaaaaaaagattcccagcaaattttgtgaagtctggttttaaatccaggtttatttaactggcccgc<br>taagtgccagatactctgctaggcacaaccacatgctaacttacttactgaagaatgaaaacaaattctgtcttctcagatttcacacctcactcagaac<br>tcaacgaagaccacaacaaagcgctcgagagaagcgatttaccagggtgtctgggggtgctgttatcatcgctgccacactaacaaat<font color="green"><u>AAGAAGCATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCATTTC</u></font>caggggaagacagatccaacacgagacaggtgtgctgagaaaagggtatcatagtcttgattttgtccttt<br>cgcaaagggtaaatgtaaacaggaaataccagaacacctaaatgtaaacaagtacttgaggaattctaaagttgttctaagaactatggaaaaatatttt<br>taaaaacattcatattattaaaaatatggaatattgttatggttgttatagccagaatgtatcatggctccacttttataaatactattaaaaagtggta<br>tttatatcatactccttataaaatttcaaacgtcacatttactgcagtgttttgtcattctttgtagcacaatttaaaatgcactccaaaatggacatgt<br>gatttttctcttccaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	429	103	NA	intron:C21orf34:NR:027790:2/8
0	chr22	18099533	18099826	1000117	0	+	Ya5NBC109;52565; RIP_Alu_chr22_016_01	GTGCCTGGTACTCTAGAAATAAAACTCTCT	AGAATGAAACTCCGGCTCAAA	SINE	Alu	Ya5	aaatatttgagacagaaatgcatttactgaggccaggcgtggtggctcacgccagtaatcctagcactttgggaggccaaggcaggtggactgcctgagt<br>tcaggagttcaagaccagcctgggcaacacagtaaaaccccatctctactaaaatacaaaaaattagctgggcgtgatggcatgcgcctgtagtcccagc<br>tacttgggaggctgaggcaggagaatcgcttgaactcgggaggcggaggttgtggtgagctgagatcgcgccactgcactccagtctgggcaacaagaat<br>gaaactccggctcaaaaaaaaaaaaaaaaaagaaatgcatttcctgaaataatagctgaaataggacttctgtatttgatccag<font color="green"><u>AAAGAGTCATACAAGA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAGAG<br>TCATACAAGA</u></font>aactatcaccatcaaaacaatattaagcaatatcctatcagctgttatgtattagtgagagggaaaatagtcttttcttcttcaaatgat<br>aaactagtcaaatagcccaaggtttcagagagttttatttctagagtaccaggcacataaaaatttaaggctgtactaaaaggacaatgaaaatattaaa<br>caatatatcttggtcatattttatttactgatttttttcttgagacagagtcttactctgtcacccaggctagatggagtgcagtggtgcgatctcagct<br>cactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgagactgcaggcgtgcaccaccacacccaaccaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	561	251	NA	intron:ATP6V1E1:NM:001696:2/9
0	chr22	17884244	17884561	1000118	0	-	Ya5NBC221; RIP_Alu_chr22_016_02	CAGTTTTCCATATACATGTGGGTTC	TAGTGTTAAGAGGCCCATTTTCTAC	SINE	Alu	Ya5	atctgacaaaagatgggagatacctaaagagttgagaatttgaatataaaacttttctgtcagaaatcaaagaaaacctagagagagagaggtaccatca<br>tcatgggtcagaagactcaatagtgttaagaggcccattttctacaaattgacctagatattcaatacaactccaatctaaatgctagcaggcttttttt<br>gtagaaactgataagctaattctaaaattcatatggaaatataaaaaatataaaatagccaaagcaactttgaaaatgaacaaagtgagaggactaacat<br>tatttgatttcactacttattaaaagctgcactaattaagatactgtgatattgtcttgaaaacagaacagagtgaacaatgacata<font color="green"><u>GAACAGGGTCCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAACAGGGTCCAG</u></font>aaatgaacccacatgtatatggaaaactgacttgggcaactaataaaggatagtctttttttttttttt<br>tttggcgggggggtcggggggatggggacagagtctcgcactgtcatccaggccggagtgcagtggcacgatctcggctcactgcaacctccacctcatg<br>ggttcaagagattcttctgcctcggcctcccaagtagctgggagtacagacgtgcaacatgacgcccggctaatttttgttatttttagcagagacgggg<br>tttccccacattggctggactagtctcaaactcctgacctcgtgatcctcctgactcaagtgctaggattgcaggtgtgagccactgtgcccggccaggg<br>tggtcttatctacaaatg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	640	313	NA	intergenic
0	chr12	90846389	90846579	1000119	0	+	Ya5ac2215;12732; RIP_Alu_chr12_089_01	TCACATTCTGCCAGTGTTCC	CAACAATTCCTTGGTCCCTT	SINE	Alu	Ya5	atgcatggcacttcatcttttaaagggcactttaataatttttctaaatcaatgcatgtaagagttaggtgttctcttcaagttcatcttaattttattg<br>aagaagaaacaggctcagatatgacagatgaattggcctggcttttcaaattttaagtaagttgacttttgattacagattcagaactcattcaattgga<br>caacatctgactcctagagacagacttcagaaactctgtagaaacccaaaccaaaactagcaagtgaaaatgtagcttctcttctttatgccttccatat<br>tctcacattctgccagtgttccactttttatattatacttatttgtttttgattcctggtttgcttcaattttaagataaagataat<font color="green"><u>AGTAATAAAAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAT</font><font color="green"><u>AGTAATAAA<br>AAAT</u></font>gtactatgagtatgaatcattaaatacaggattgaaaagccttatgtaaatatagttgctcttcaaataatctttaaatatttgtgaccatctact<br>gtcataaagggaccaaggaattgttgtaatataactgatttactgtgatttaagtgtgtaattgagtaacaaatgttctaaaatatgactgacagatttt<br>ttcagaataaactctgtgttgttcattttgttatagtcaattaaatttaaatgtattaaaagcggtttacctgatattaaactctaaactctatgttctg<br>gaaaatagacttcaaaaaacttcatatggtggtcaattacagatgttacaaataaactagactaatgggatacatttaaatgcaaaataca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	424	124	NA	intergenic
0	chr13	72956725	72957024	1000120	0	+	Ya5_552; RIP_Alu_chr13_071_01	TCAAAGTTCATTGGAACCAAAA	GCAGGCAACTTCAACAGCTT	SINE	Alu	Ya5	tgctgtgatttcaatctttgagaaaaactaaggctttcatgagctaatcatcttctgtatctttatattctggctaattagtaattataaattgcctatt<br>ttaaaacaggatctaggacacaatgaaaatttttaaaaagttaaatcaatctgggctgaatgcccagaaaaattaaaaatttagtttaacactcctggga<br>tctctatgtgtatgtgtatacgtctatgattgggtttattagacaaaactaattgaaaagaagatatctggaaattaaacctcaaataatattagtcaga<br>gataaggaagcatatttttaatcaaagttcattggaccaaaaaaagtctataaagtaacttaatccaaggttttttttttttttttaaaa<font color="green"><u>AAAAGGGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGGGTTT</u></font>aaaaaaaaaaacttaagctgttgaagttgcctgcatttaaaattaatacctaggggtagaaaacctactccttaaacctgatactaagaa<br>atatgcttattaatggagtcaggggtagaaaaaggtttaaggaggagaaaataaaagtgaaaataaagagacaagcaaggggtatagcagatggagatag<br>acattcaaagctggagagagaaagagtaggaaagattaaagcatttagaacatattccaaggaatattcttaggctatgggcatcacagtgggctgtctc<br>cctgccctttgggtaattgactagccactattctcagctgcttaagtgtataagcttcttaagaggccatttttgttttattcatagtgcctactatagt<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	423	131	NA	intergenic
0	chr13	69966668	69966961	1000121	0	-	Ya5ac2312; RIP_Alu_chr13_068_01	GGCTGGATAGATAACAGGCAA	GGCTTACCACACAAGCCATT	SINE	Alu	Ya5	aattacagttaaactttcttttgagatggagtctcgctctgtcgcctaggatagagtgcagtggtgcagtctcgcctcactgccagctctgcctcccggg<br>tccacgccattctcctgcctcagcctcccgagtagctgggaccacaggtgcccgccaccacgcccggctaatttttcgtgtttttagtagagatgggttt<br>caccatgcaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccaaa<br>attacagttaaacttctataatggctggatagataacaggcaatttacgttagatggtcagtgaaactctacgaaggaaagtcatatttgaaatt<font color="green"><u>AAGTT<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTT</u></font>t<br>caagaatacaaaaaaagagcaattcataagaagattccagagaagaaatttctagcagtcaacagtgcaaaggcactgagtctagaaatggcttgtgtgg<br>taagccattacaatgggggtactaaagtggagaggggtgttttcaggtgagaacacttaagtaagcagtaactgaaagctgtatatcttctgcaccatta<br>ttttcagaagtctgtatttggtcaaaaatagttaacattttctgtattgcataaaacctaaccctatattttgatgaatttaaaaaatgtttctgcatat<br>ttaagactaaattttatttacttcatcaaaaattagtcatttgtatatcatatgcttatggaatgataaccaagtaaatgaatataactgctcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	189	NA	intergenic
0	chr13	89003284	89003606	1000122	0	-	Ya5ac2336;pAlu13-87839827;238759; RIP_Alu_chr13_087_01	GTATCACATGAGGTGCCTTGATT	GTCCTTTCCCTAATTCTAATGTCTG	SINE	Alu	Ya5	gttattgctttcctgaagcttttccaaaatccatcatttccagacaaaactagttattagcaaaacctgaggtgttaaacatgatattcacaactttaaa<br>ttaatatagaataaaatactatggatatagttcataagctaagaaattattatatgaaaatatttctgtatgtgtaaagttgaagtgtgtatcacatgag<br>gtgccttgattaatatgttggtaagatttttaagaaatttgtattgctttttatttaaaataaaattattactgtatttaaaataaaataaaatttcttc<br>agcattagtagccattagacatcttttagctcaagagtcagactctcattcattcagtacagagtagaattggtaaatgatactctc<font color="green"><u>AGAAAAATACTAG<br></u></font><font color="red">ATTTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA<br>AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATACTAG</u></font>atttagatatcagacattagaattagggaaaggactgttacagtactatggtgaaaaaatgtaa<br>cagaggagaaaaaatgaaaatcatttctccctttagaatataaaattttaggatgtaatcccttttttagataagaaaaacacaacttagtcatatgttt<br>tcctatgggaagagacaagctctcacaaagacatagaaaattttctccgccgaaatgaaaaaaaaaggaatatcttgccaattttttctttttctttttt<br>cttcttgattaagcctttttatatcacaggggagagaaaattgattagaagtatttaaatgtttcatttggatgacattattttttagtttcctacttga<br>tacaagatttattcaaagattga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	585	250	NA	intergenic
0	chr22	16353465	16353466	1000123	0	-	Ya5533; RIP_Alu_chr22_014_01	TGTCATTTTGCCGAGAGATG	TTCCTTCCTACCAATAACCAGA	SINE	Alu	Ya5	atttttctgaagtcatacccccccacacacacaccttcagtgatgtaagattacttatggtgcaaataatttggcagataacccaggtgacatgacgact<br>ttataaaagagatactgctatcatagatgtaaaagccagaaggaacaagcaacgtggatactgatcctccatcatggcctttagttatgctatcagattg<br>gaaacagaatcaaattcttagctcaagtacagcagagttttagaaaaagggaggcttgccacaggcacaaagcttagggaaatttgaggagagacacaga<br>gaaaaacaaacatgtaaactgctctctttttatgtcttccttcctaccaataaccagatatctactccatttctgtacttcattcaacaaatta<font color="green"><u>AGATTT<br></u></font><font color="red">ACCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGA<br>GCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGATTT</u></font>acaagaccgtacattgc<br>tcttttgagaactcacctaaatttcatctctcggcaaaatgacaggtcatctctccttgccatcgttacttcaaccaactgacacagtttcgtttttatt<br>tgcattgcatggaccatattcccaagcacacaaacgtacctatacagacatagagacaataaaaaaattatcagatacagacacaagataaggcattcaa<br>aatactttaaccatcaaataaaatgaactaaacgtaagtttgaaaacagtaagacatttatttataggagagcatacacaatttctggttaccttgttgt<br>cacagcctagtttgtgtgcagtaaagaatggcaaattattttatcaattactatcaatatcaatgtgtgacaggttt	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	408	125	NA	intergenic
0	chr14	59894371	59894372	1000124	0	+	Ya5ac2408; RIP_Alu_chr14_058_02	TGCGCTTTAACACCAGTCAG	AATTATTTGGGGATGGGCTC	SINE	Alu	Ya5	tattgctgtacgtgtgacctcgggaaagttatttagccatgccaccctcaatccctgcatatgtaaaccagggcttataataataccttctgataggtgg<br>ttatgaagattaaatgagagatatgcaaaagcccaattccagtttttgatcattcttttcaaagtgtctcacataattctctggctactggtacatgtag<br>attattaaaaccagggcacaaattgatagtgcactgctttatcacaacactgctgttctgctaaaaccctcagccacatttatctcagaagggccaggac<br>cagatggacactatcattgacttgagtctataattatttggggatgggctcaagtcttgcatttttgttttttaagatactag<font color="green"><u>GGTCTTCCACTCTCTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GGTCTTCCACTCTCTTT</u></font>aggaaaaagagcgaatgctttgccagccctattatcctctgactggtgttaaagcgcatttagtgggaatgtc<br>attaactttttcatgggaaagatgaaattggccagcaccctgtttctcccttccagttttgctgtgctcctggctgtgcctagagagggaaatccaatga<br>agcgtgaggtcaggcagcccaagctcttccccagggtgcactcagccagcaggcctcggtcctaccttgaggcaaacactccttctaaatgtttatttat<br>gcttttgaacccaaggtccaatgggaacatgaaacatatgattccaaaagagattaccccccacggatttcttctaccacacacagagaaaaggaaaacc<br>atgtataagc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	352	127	NA	intergenic
0	chr14	87858065	87858383	1000125	0	+	Ya5ac2409; RIP_Alu_chr14_086_02	CTGGATCTTGGTTTCCCCTT	GGTTTAGGATTTGCATTGCTG	SINE	Alu	Ya5	aaggatttccgtttaacttcactttcctcagtccatttcatacatcttgaaacttattattcaactattatgttatttcccaatttgtctatttgctaca<br>tttcaatggccttgtctagatctcatagtccctttcactcattgcttccgttgttatatctacataggatattttgtatagattcataaaaatgttaaaa<br>tatatgtatactcactcaatacttactcaattagccctaattgccagacacttaatagaatttggtgggatcacttctggctttcataaaaacttgggca<br>cttttcaactactccctctggatcttggtttcccctttgtaaaagatgaaaaaaatgaaaaggaaaagatatcgcacaatagttatatttat<font color="green"><u>AAAATCGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA<br>AATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCGT</u></font>aaagctgattgtaaaagtgacagaagaaaatatcacagcattgattctacaaagactcctttgattaacagca<br>atgcaaatcctaaaccagtcttgtaaatgtactgaaaaaaagtcattaaatttcagtaatattcactctctccctggtcttaaacactgttagtagaatt<br>atagattggttaactcttttagaagctaatttggcagtatatatcaaaattacaactgtgttttgcttatgacctagtaattctactttacaggtaccca<br>aagatgtatatataaaagtgttctttgtatcatttattgaattagaaaaaggtaatggacaatacatattcactggtaaacaagtgaaaacattttattg<br>aatatgttggaggtatgaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	172	NA	intergenic
0	chr15	69189326	69189327	1000126	0	-	Ya5ac2465; RIP_Alu_chr15_066_01	TGATGGAGTTTAAAAAGTGTCAGC	AGCTGCCCTAAGTCACCAGA	SINE	Alu	Ya5	aaaacctcctgaacaacatgttctcattaactgttatcatcctcatgacagctttcttttactagagacttgtgctgtgcttactgaatcctcacctctc<br>ccctgtcaggcgggtattcttattgtacaggtaaatgaggaaagagccagactctgctccctagaaatagccacaaactcagccaatgtgtaaccagcac<br>cctgtcaggtcagagtgctttgtccacagaagtgctcagggccaagtggaagcagacagagcttctcagctgccctaagtcaccagatacttccattgct<br>tgcaactcctgatattttagacattatagaaatgataaaatagggttacaaaaatcattatgtatttgagatgcttacatttaata<font color="green"><u>AGCTGACACTTTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGCTGACACTTTTT</u></font>aaactccatcaaaatatataattcatcatcattatggaattcacaggatatttacaggatttataaaaaataaagt<br>gagatcagtgattcatcactacttttataaatcctgtaaatatcctgtgaataccataatgatggtattctacctaccagcagtgccttccactaatggg<br>atccaacgctgaagctgtaagttgcacatctctttcttctgtccttgttggtttatctctgtgatcacagatagaacctctttgggatggatgtaaggtc<br>caaattctaaatttaagggcctctgtgaatttgaagcccaggacacaataggccctgaatggaaggaaatattgaaggccacccttttaagcccatcagt<br>aagctcataa	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	463	145	NA	intergenic
0	chr16	33052941	33053237	1000127	0	+	Ya5ac2487; RIP_Alu_chr16_032_01	TTTCAAATGCCTAGTGCAATTACT	TGCACACACGCTCACTGATA	SINE	Alu	Ya5	atactgcaggcaataagaacacagtggtaagagtttatgtatgtaaacatacttaaacatagaaaagtatgtaaaaatatgtattctcatgggaccaatt<br>ttgtatatgtaatccatctctgacagaaatattatgcatgacttgactctatgaaaaaataatacatttttaaaaatggacacatgtatcaaacatatta<br>ttataaaaataaaaatatttattcagtgtaagaatttgtaatgatcacagcttatatttaagtacagtttcaaatgcctagtgcaattactatttatttc<br>tttgtgtattttaaacatgtatataataaatatttttcaggttcaacaatatatatcaatcctacaggctcttataaatattagtt<font color="green"><u>AAAATCAATTGGTA<br></u></font><font color="red">GGCAGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACGTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAAACCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>TCAATTGGTA</u></font>aattcatgtatatatatgcatacctgtatcagtgagcgtgtgtgcatgtatgtttgtgtaaatgtaattgtatgtgtgtgtaaatgtaat<br>tggatgcatccttatatttacccttacctacaagatttccaagattcatttatgatctttagattatgggcatttaaagatttaccaaatacaactgtaa<br>tagtggaaaatatcaagatgttattaaattcaacttgtgcacataattgtttctataaatttatgtttcttgcaaaactggcagtaatgctcatgcacaa<br>aataattttctaaataaaaaataaaaacgttttctcagtcattaattcttaaaattatttctccccaataattaatgtgaattaattcttaattct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	490	179	NA	intergenic
0	chr18	27629691	27630006	1000128	0	+	238589;Ya5ac2585; RIP_Alu_chr18_025_01	TCTTGCAACCTACATACGCC	TGTGCTCACTCTCCTGACCA	SINE	Alu	Ya5	gtagcttaattgtagccagtatagagattgaaaaattgtctagtaatagataacaaatacatagtaattattattcatcaggcactcttttaattgcttt<br>acacatatcacttttttcaatctttgccaactgatgaaaaaggtgttattattattcacattttattggtgataaaactcacaaagttagtgtgacttac<br>ctaagcgtcacacagatagtttattaaataatgaacatttgagaaccggcagtccatactcttaacactctgtcactacaccctctaagaaaagtagtct<br>tggtcaccatatacactcttgcaacctacatacgcctatgttatgccagattggagacaattttgttcagtatatgaaaataagaatatc<font color="green"><u>AAAAGTGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTGAGA</u></font>aaactatgccaatattacaccaacagagccataaacttgggggcaagatcagaaaacatggtcaggagagtgag<br>cacaggcgttgtgtggcaaaagaagtcagccctacctgagcccacaccaggatatcccctactattcaaatcctcacaggagtccggttttgcctttatg<br>acactgtgcttgattgtaattgttcgtaaaaatatgtgcataataatgtctaatcatttgctaaattgtattttcaggtagaatactatgcctgacacat<br>tagaagtattcaataagtactttcaaaggattccaagttgaatactcaggaaaagggaaactaaacagaaaaaaaaaattataagcaattcctaaaactt<br>tgcaaaagacaaatta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	488	161	NA	intergenic
0	chr18	50925993	50926300	1000129	0	+	Ya5NBC244;Ya5ac2596; RIP_Alu_chr18_049_01	TGCAAGTAACAAATGCCCAA	ACAAGCACTGCCCTCTGATT	SINE	Alu	Ya5	ggtttatcccttcaaggtgctaccatagtaattatttgactccaccttttttatttccttgtatgtagattcagtgtcacaaaagagagaatattattgg<br>catcttttgagacaggtgatcacacagctaaggagaagatgggataagaccatggaattcccaactgatattgctaccaagctttcatgatatagaggag<br>agcttgttttccaaagagaaaaaacaagtcctcctttaaaaggaagaggagaggatgggatgctggacagtgcaagtaacaaatgcccaatacaattcct<br>atggctgaaatcttctgaaacttaaatgttaccttccattcatgtacttaataaagaaatggaagtataggaaaaaatgagagcc<font color="green"><u>AAAGAAATCAGAGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAAATCAGAGGG</u></font>cagtgcttgtctagtggaccaagatattaattaagggtttttaataatgttaatttataattgtcatgccttgagat<br>acgaacttggtaaggagaatatagtctatgtctttgagcgaattgtggtccaataaaaaagaaaaagcatttttttaaattcctgaagtaatatcagaaa<br>tataatcataaaattgtggacaagttaaaatcagagcaaacaaagtacagattctgtctggaaaaataagaggaagtttcacaaaataaatgaggtttga<br>gctatggcttagttgaattatcacatactaattccagggacttccaaagaatggaaaactcatgtgcaaaaatacccaagcaggtgtcagaaagatgatg<br>tgttaaag	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	453	130	NA	intron:DCC:NM:005215:18/29
0	chr18	45996161	45996460	1000130	0	+	pAlu18-45884052;79823;Ya5ac2608; RIP_Alu_chr18_044_01	TCGTCTCTACCTCCAAGGAAA	TTTTGGCTGAAGTCCACAGA	SINE	Alu	Ya5	gaaagaaagagagaaagacaagaaaagaaaagaaaaggaaagaaaggaaggaaagaaagagatgtattattccaatcaatattcctgggggagagttacc<br>accacaaaaagataatacttaggcaaattaaccctaaattggaagtatcacaacatattttgatccaagaaccccagatgtactatgttaaatactcctt<br>ctttcctgctgtgtctcgtttgtatgctggaccagatagagaacaggaatgtgtaacactattttcattccattccaacaacaaaaaatatcaagcattt<br>cctactgctctgacactaaataattacaaaagacacaaccatgtacagagatgtcgtctctacctccaaggaaaacacaatct<font color="green"><u>AGAAAATAGGTATCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAAATAGGTATCATG</u></font>ggtctaaaaggaaaccaaaactgaaatgaaccaatctttaaaaataaagcaacataagagccttatctaccaaaatctgtgga<br>cttcagccaaaacggaatttaaagataaattcatagccttaaaatctatatattagggccttagaaagaaaatcaactaagaatccaactcaagggcaat<br>gtggtcatggtggcagtaggtttcccaatctccctataacctctcctgacaaccaagtagagcagataggatgcagccccccaaaaacccaccacctcag<br>ccaacaacaacaaaaatcccacctctaacctctaacctcttcaaccaaattaggtgacaggagacctatcaaacctgaggacatggacaaatacgccaaa<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	459	142	NA	intergenic
0	chr18	55671137	55671428	1000131	0	-	Ya5ac2617; RIP_Alu_chr18_053_01	TGACAAGCACAGGACTGACC	ATTGGCTGATTCCAAAGCAC	SINE	Alu	Ya5	caatagacttatatttaacatactttgcttctgcccttttctttcatttgatgtttgtgggaaatatttgtggtgagctagaattaaaagtctatacttt<br>ttcattggagcacttggtcagagcagagtgctcataagatttagatcaaatgtgtttgatccctaccagcccagaacctggaacaggctactatcccagg<br>agagctaatcatggccacataggatagtggacaagagtcagggggacctcaggagccaggagactccagacagtcagcttaaatgtcttgctttagaact<br>ttcatgtggcagcaaccttttattcaatgtctattcatttgtccctgattagtgacaagcacaggactgacccattgtagctgttt<font color="green"><u>AATAATAATGTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AATAATAA<br>TGTTTG</u></font>tgcatttaaagacgctgtgctttggaatcagccaattttgcagggcggaggaagaaaggaaactggtttgccatctggcatttacaaaatggga<br>aacaaatgcattgactttttcttcctctcaaaacttcacaaaaatggcaataaagagactgttttctgaagacataaacccataaggatgaagagcattg<br>aagagaagataacagataacaatagaagataaaaatttccaaattttgaaaattggagaaatgcttataaagcggcttagcagagccaaaaaaactgaat<br>tcactcttgaacctgggaggtggaggttgcagtgagccaagatcgtgccactgccctccagcctgggcaacagagaaagactgtctcaaaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	390	84	NA	intergenic
0	chr20	30899236	30899534	1000132	0	+	Ya5542;238005; RIP_Alu_chr20_030_01	TTTGGATTTCCAACAGCTCA	GGGGGTACGTGGGTGTTACT	SINE	Alu	Ya5	aaaaactggagattgagaagcgggccattgtagaggatcacagcttggttgcagaggagaagatgaggctgctgaaggagaaagagaaaaagatggagga<br>cctgcggcgggagaaggatgctgccgagatgctgggcgccaagatcaaggtaccatacccgtacccttccttaggcccttgccctgtcactgcttttgct<br>ttcatcaaacaacaacaaaaaacataaccatatgagggatgatgtctctcatcagttttggatttccaacagctcatgatatccagtactcagtaaacct<br>ctgtttaattgacatgaatatgattttttcacatttacaaaaatgaaaattgaattcataatgagaataattattatgtatgcacatagtataa<font color="green"><u>AGAACA<br></u></font><font color="red">GCAACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT<br>ACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGC<br>GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAACA</u></font>gcaataaaagtaacacccacgtacccccccacccagtgtaagaaatagaacaacatccatttttctttttttttttttttttgagatggagtttc<br>actctcgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaacgtctgccatccgggttcaagtgattctcttgtctcagcctccagagta<br>cctgggattacaggtgcctgccaccacgcccggctaagttttgtatttttagtagagatggggtttcactatgttggcctggctggtctcgaactcctga<br>cctcaggtaatctgcctgtctcagcctccccaagtgctgggattacagacgtgagccaccgtgtccggcttttttttttctttctttcttttttttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	477	185	NA	intron:KIF3B:NM:004798:2/9
0	chr20	6150954	6151279	1000133	0	+	Ya5_550; RIP_Alu_chr20_006_01	GCAGACATTTGCAGAGAATCC	CACCAGGGTTCCACAAAGAT	SINE	Alu	Ya5	gatgttattgtatgtggtccgggcgtgggatttgggatgctggacaaatggttattatgacttacttccaaaggccctctttgcttatttgcttcaccag<br>ctttgaatttcttggcaaatcctaatggaaactcacctatgtaatgggcttgaatttgactacacaaactcagatgtgcaagacatgcatgtcatgttat<br>ttttcaagaataaatttaaatctgtatctgagtcctaatctttctgagctgctgggatagtacatctcattcattgttggagtttcctgtctgcccccat<br>cccaagtcaggtataagcctcagagcagacatttgcagagaatcccatggtatccattaacaagctcatggtttaagtgcacattatcttttaa<font color="green"><u>GAGTGG<br></u></font><font color="red">ACATCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTA<br>AAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGTGG</u></font>acatcctttctgtggaaatgagaatctttgtggaaccctggtgctttggtccagttgtactgggggca<br>tcaagtagtcacttctcctgagatcctgcctctagcttgaggtgtggcaaagaaacaccaactaatttctcattccaaagcttggacaacctcactcctt<br>ttctctctgcttctgctatactgtatcaaaggcacctgtttctcccccatttctccagtaacctcaggcttttaaaaacagagggcaaacagggagatgt<br>tcttatatacctttttgtgttgcgtccagaaaatacatcctatctgattcttctataaagaaaacacagtatctaaatacgttttcctagcacagttatt<br>tctatgtttagttcctcttacaggat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	451	119	NA	intergenic
0	chr20	45127532	45127839	1000134	0	+	Ya55632; RIP_Alu_chr20_044_01	AACAAGGGGAAATCTGGACA	CAGGCCTCTTCCCTAGCTTC	SINE	Alu	Ya5	tttacatgactgcatccctggtcaacatcttgacagcaacctcaaagaccttgagcctgaaccacctagccaagttactctacaattcctaaaccacaaa<br>aacaatgagatagtaaatgtttactgttttaagttgctaattttggggataatttgttacacaacaataaataatacattaacctgttatggggttgaat<br>tgtctccccaaaatgtgtgttgaattcctatacccaagtacctcagaatgtgaccttatttggaaataggattgttgcagatgtaattatttaagatgca<br>gtcatactggaggagggcaggcccttaatccaatgactggtatccttataacaaggggaaatctggacacaaacatgcacactt<font color="green"><u>AGAATGCCATGTGAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAATGCCATGTGAAG</u></font>ttatgctgccacaagctacagaattatcagaagctagggaagaggcctggaacagatccttcagaagagagtatag<br>ccctgccaacaccccaacctgacttctggtctccagaactatgagatgtatctgttgttctagaacatccagtttgaggtactgtgttacggcagcccta<br>ggagatgaatacaccctctatatcatgtctttgttctttggctacttttaagataatctttattaaactagttttgatttctttatgtcttgaaatttgg<br>tgtcttattgtgctcttcatttttatcctgcttggggttcattaaacttcttggacttgtgaatttacattttccgtaagatttgaaaaaattgttccaa<br>cattaaga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	424	75	NA	intergenic
0	chr21	47387673	47387972	1000135	0	+	Ya5NBC24; RIP_Alu_chr21_046_01	AAAATTGAGAGACGAGGAGAAGGT	CCTCATCAATACTGTAACTGTCACAAC	SINE	Alu	Ya5	gtttccccggcacacacacctcacaccatacacaagaatacaccccagtggatttgggatctgaatgtaaaaaatgaaacaagtactagaggaaatacag<br>gtgaattcctccataccctgaatatgaggaaagatttttctaggaatcaaaacaaaagattaatttgactacatgaaaataatagcattctgcatggccc<br>aaaacaccacaaaggcaaaggaaaattgagagacgaggagaaggtgtgtgctgcacaatcacagatgcatagctaatattccatatattaaaaaattcaa<br>tatttgagggggaaaacatcaaaaactcaacagaaaaatgggcaaaagacatgaaacatgaatagatcatttctccaaaaatgtataaaaat<font color="green"><u>GATCTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GATCTTTA</u></font>attatatgaaaagttgttcaacttcatttggaataagaaataaaaattaaaactacagtgagaggtcctctccaatctcgtgttgtgacagt<br>tacagtattgatgaggccgtggcctctcactggctgacgactccaagctgcacagccgtgcggaaggcagttcaatccgataaaactccgtgacccagca<br>actccacgttacgaattcacaccgaagaaaacctccaacgataggaagacttgtaggcacaaggtcatttgatgcagtataattggtggttgtgaaatac<br>cggaaaaaattaaatgctcctgtgtagacgtgtgttggctaagctaaggtactgccacatagtgccttcatgcagctgcacagagaatgaggatggtctc<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	595	286	NA	intergenic
0	chr21	14580446	14580750	1000136	0	-	Ya5448; RIP_Alu_chr21_013_01	AAGAGTGCACTGTGGTTGAAAA	GGACAGCCTGACTTAATCTCAA	SINE	Alu	Ya5	gagtagaagcttcaaagtacagatgtgctgaggaacaaatgcatgcttgttacttttaaatcacttgtatatattctaatgttctttgtcctcttggagt<br>ctccaactcagattaatattttattacagcagttactgtttttaaaatggacagcctgacttaatctcaatttgttaacagtgatttaaatgaaatatct<br>ttgaataattaatattaagtattcatggtatataaaagactagttagctaggttaactttgcttcataaaaatgaagtgattgaagtcaatgtacatgat<br>gagctatatttcttgaatgcctttatacttgtatttgttgatttgttggaaagaaacctgaacatttattaaggtttcactatatggct<font color="green"><u>AAAGAATTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCTCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGAATTGTA</u></font>tacttttcaaccacagtgcactcttttttttgttattaaataagaagccttaatttaaataaaaatggagatttgcttgttagat<br>gattgtttttaagaataattgtgttttgtttctacatgcagaagctaattttaaatacttattgaattaaaaagaaaaaagtatgcaaaattataaaaat<br>tttggccagtatttttactgcttaaatagtgtaaatcatttttaaaagtcattaatttacctattaggaataatcaatggatgttacacagcatctttct<br>gtctctattaagaaagattttagcctggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcagaagattg<br>agac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	592	277	NA	intergenic
0	chr1	59059627	59059941	1000137	0	-	Ya5ACA618;pAlu1-58417239;Ya5NBC347; RIP_Alu_chr1_058_01	GCTACCCTCCTATGAGTGACAGA	CATGCCCATTGCTTTACGTT	SINE	Alu	Ya5	tgactgtcaacaaatggggctgttctgtttattaattgctgagcagcaaacaacaaaactggcttgaacatactaacattttactatatctcaccattta<br>tgggtcataaattcaggcagggcttagcctggagacacttaggcttcatagagctttgactggggctactcagtggtattcaggtggcatctggtctggt<br>ctgaggatcctggatgtcatcactcacatgcctggcaccccgctggggacagcgggagactgggctgggctcagctggacccctccccctctccatgtgg<br>tctctccagtggggtagatggactcatcccatggtgcctcagtttgctaccctcctatgagtgacagagaaattgtgaaatgaaagataa<font color="green"><u>TTCAAATGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAGATAA</font><font color="green"><u>TTCAAATGAT</u></font>ttgaaatgtcatcttcagtacacataattaacgtaaagcaatgggcatgcaatttttaataacaagtcatttgtt<br>tctctctatgcccaccaaatagatgtgtccatgatttttttaagtatcagtttgaagaggtgctactctgccatcctgtccaaggtgccactgtcactac<br>tcaccctgtgggagtgagttatggggctctcttcctttctcaatagcccacttggtctagagcaccaacctgtctctctcatggtctcccagcaacctcc<br>aatctgatcttgctgcttccagtctcacctcctgccactcatcctccatatagttttcctgcgatttttctgaaacacaaatctgctcagactattccct<br>tgcctaaattcaatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	447	104	NA	intergenic
0	chr1	231303078	231303367	1000138	0	-	Ya5ACA593; RIP_Alu_chr1_227_01	CAGAGCCTTAAGACGTGAGAGTT	GGAAAGCTCAGAAAAGACAGGA	SINE	Alu	Ya5	gcactgcactccagtctgggcaacagagagagaccctgtctcaaaatattaaaaaaaaaaaagaattacaaatattaaaatatttttacctgtgatcaca<br>gtgcaactatgactccatgttctttgtcacgtatgtattatcccttttaatagaagaggtgtttcctctgagcctttaaagcctaacataccctttttac<br>aaaataaggtaagacagcaggctgagaagccacctgccctttggcagagccttaagacgtgagagttggctgggtgcagtggcccacacctgtaactcta<br>gcactttgggaagccaaggcaggaagatcacttaaggccaggagttggagacaagcctgggcaatgtagtaagaccctatctctt<font color="green"><u>AAAAAAAAAAAAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAAAAAAA<br>AAGAC</u></font>attagagtgatcaaaagtcctgtcttttctgagctttccaggccacaccctctcccttgcttttgtgaggtgctgactcagtgggaatagtactc<br>ctggagtatcagtgagattttcttttaaggctcttcgatttaccatggctctcaaagaactccagaagaagagcttatctataaagaaaaaagaattatt<br>ctctaacctcaacttaggaatcaactcctacccagtttaattcagagctggccatctgcacccagcaggtcagagttctccctgagtgaggagttataga<br>tgttgacattctgtggcatgtcacactaggaaagagctatggtacacagtaacccttttctccagcttcaggaaaaacagattttcataa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	195	NA	intron:TRIM67:NM:001004342:1/10
0	chr1	116471120	116471422	1000139	0	-	Ya5ACA636; RIP_Alu_chr1_116_01	ACTTAAAGTGTTCAGCGGGG	ATTTTCCACCAACCAGGACA	SINE	Alu	Ya5	tgtataattagcagtttcaagggatttacagtctaccaagaaaataaaacacgtgcccaataaggccgctttgaagaattatgtgataaaagcaatgaga<br>gttgtatatctcatgtgcttgctgcacatgactttgagcaatcttgtgaaaacattctgcctcaatctctttcttaatatagcagagtcctagtgagata<br>acatcagagaacagaagatgattggtgatttattacttttcagtttttacaagtttaaagtggcttatatgacaaatatcgaagaatggtcccacctttc<br>ccagagtagggagagaccttactttagtctgtggatatgtttacttgctgactgtcaatgagaatgagacaatgacattcactt<font color="green"><u>AAAGTGTTCAGCGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGTGTTCAGCGGGG</u></font>agctctggactatatttttctttttctgttatgattcttgcttgtctgaagccttatttcttttggtcaatacctgtgcta<br>aatgtcctggttggtggaaaatactgttaggttcagattcattgaaattcatggcaaaaatgaaagaaagtccttaatcaaaggcacaagatagattttg<br>caaagaaattacagccagaaaattaatccaaaatgtgctttggtttgggcttctgtacaagcacgtcttggcggcaggtctggactcgaggttgtgggag<br>ctgcaggagtggaaaatggaaatggctcatctgcacctgccctttctccagagatttggctcatcatcctctcccatgacacacagggccagtccacact<br>cag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	442	139	NA	intergenic
0	chr1	80114186	80114489	1000140	0	-	Ya5ACA647; RIP_Alu_chr1_079_01	ACGTAAGCCTCAAAAAGGCA	GGCACTGCAGATACAGTGTGA	SINE	Alu	Ya5	aagcaagtcttttgagacatctggaaatcaagtcagagcaaattaccataaattatttatatatttagctatgtaagaatgtatttcagtttttggaatc<br>actgtggtttatctatttaccaatagaaggcaatgaaaacaggcatgttttgtctgctatgtacatcatctagaattaaaacaaaagtcagttttactga<br>atagggccattcatgctgtatactgtacaactcctaaacatactattcatgtaggccacaatataaataaatggtcatcctctttcctgaatctgtacaa<br>ccatttttggtgattatgccagattcagcagaaaaattagatattttaagtcagtgtttctagaacgtaagcctcaaaaaggcaact<font color="green"><u>AAAATCCTTTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATCCTTTTAG</u></font>ttcacactgtatctgcagtgccgatactaatgcttaggttatagtaggtgctcaattaatatttagtgcattaataaatggta<br>aaactaatggcattgaaatcaatagtagtgattaatttaaaaaaatagaattctgacttccctcctgatttgctaagtcagcatatcaagatgggcatag<br>agattaaaagattattctaagcataacattttggaaccagcattgttgatttcacatctagctacaagactaaactggcatataaaattcaggatgtata<br>cagggaaagcaccaattctagtcttcaatgtaattctcaagtggtggttttctggtaagtttgtagacaataatacttaggagaaaatgtgtataaaaga<br>ctaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	375	58	NA	intergenic
0	chr1	86882448	86882752	1000141	0	-	Ya5ACA662; RIP_Alu_chr1_086_01	CCTGCTGCTTCTGTGTTTCA	TTGCCATTTTCACTGACTGC	SINE	Alu	Ya5	gtagtcaaatgacaaaaatgtagttcaagtttaagcttataaggctgtggttcttaatgcctcatccataaatgctccataaatggcagctgattctaca<br>gtaattattaattagtataattatcagtactgtcagctggagttctcttgctccccagagaagtaggtataattggcttttacctctgtcaatttcatgg<br>cccatggaagatcaagcccctcctaaatttctgcaactatgctgtatgcttgatttctcaaaactcctgcttcccagatccacacctgctgcttctgtgt<br>ttcactacattgtcttaaatgtagtatttggaatttctcaaagaaccatgtatatactgtgtttgcagcaatttagactttact<font color="green"><u>AAAGAGTTCTTAGGGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAGTTCTTAGGGA</u></font>aactggagaggtatttatatcacagaaaaaaataaaacttaagcagtcagtgaaaatggcaacattcttgtaagggaaa<br>tagctgcactttagtcaagagcaggccgaggtggccttctggtgcagcatgactcagtgggtttggagcacagggcacaaccctgcacattatgtaacca<br>cgtgacacgaggtgcattaggtgatcacccatgtgagctcgtgcttggcttggagccattattgtctgtaaaaggtataattaccttgctaacactgtat<br>atacagcttgctcgcatccagagagagagagtaaagccatgtcaaaactgtctatgattcctcaatgtttttccagctacctaccacttgcccaccgact<br>cccct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	176	NA	intergenic
0	chr1	210962029	210962337	1000142	0	-	Ya5ACA766; RIP_Alu_chr1_207_01	CCTAAACACTCCAACCAAGCA	CCTCCACCCTCTCTCAATCA	SINE	Alu	Ya5	gcaatgaagacagaatggcttatctgacaaagatctaaagcaacaacaaaaacaacaataactttctataaaccctcattattttagaggtttggagaag<br>ctaaatccttcacagagatgcttcccaagattcttgtaagctgagtatggagaggagggggtaccccactgcactgccatcactgtggtgcattgctcca<br>cattgctccagggacttgaagttgctaggtaaatattgctgccacttgccatataataatgttgtttgctcatgcttagcacagagggaggaggctatgt<br>gtcagtgtcaccctaaacactccaaccaagcattaatactcatacagctgttccatctgaagcaattaaactaagtccgcactttt<font color="green"><u>AGAAAGAAGCTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCCGTGTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAGAAGCTATA</u></font>atatgaataatctagaatttcagaaatgcaaaaccacttgtatcaggtagtgcacacattacctgattgagagagggt<br>ggaggcggagaccagttctctttcctaattctgtgtttgcttaagtaattttaaaaattggtttacagtccccgaagacactggcagctaggaaagttta<br>ttgatctttctaaaggaaattttcataactttatagtgtctagacagagggattggttgaatcataaattgtggtaaattaaggcagttgttatgataat<br>gatatgaagaagttttactggcatgcaaaatgtttcaaatataactttaagtgggataaaagcagaatatatagctatatatagagtaaccttaactaga<br>tcaaaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	172	NA	intron:KCNH1:NM:002238:9/11
0	chr2	215771525	215771826	1000143	0	+	Ya5ACA792; RIP_Alu_chr2_215_01	TTTGCTTGGAATCATTTCCC	ATCCCATTACCCTTTCCCAG	SINE	Alu	Ya5	ctttattttaccagccatgaagcataaagaatattataagtagttctctatttgttttttagtgaaaaaatttagcagtctcccatgtattcatataatt<br>aagttcagatttttttccattatgtcctttatgtaatcagatgatgatttcttagacatttgaccaagttttatctttcttttaattccgaaacatttca<br>gatccataaaaactgatgaaaataaattagattttacagtatactaaatgatggactatttaagaattacttaaactaatttttggaaaacaaattcttt<br>acattaaaaatatatttaaaaactaaaatagctgaactatttagattttataacttaccaaaaaaaacaaagtagaagagaaaagagtatt<font color="green"><u>AAACCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAACCTTTT</u></font>aaaggaaatctttctttactgggaaacctacttaagaaggacagatgacactgggaaagggtaatgggatcttctgtaatgctgatgac<br>agcaatgaggtggtgatggggatagggatggaaatcccccatatggttaggaagctaagatgtgaaccaactgattttgaattaaaaattagaaccatct<br>tctgtaagacttaaacacaggaaaatcacaccaactcagcgtccttaattgcttttagtatctctgttctagttcatggtctttctttcactttcctgta<br>ttttcaatcttatggtcaggacaggtgcatgctgttttaattagcatattcacacctggaatgcaacaacttagaaattacctgcagtcacaaagaatgt<br>ct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	913	602	NA	intergenic
0	chr2	218546159	218546456	1000144	0	+	Ya5ACA804; RIP_Alu_chr2_218_01	GACCGTGCTTAAGACCCAAA	CATTTCTCTGGGAGTTTGCC	SINE	Alu	Ya5	aacaaaaatctccaggtattctatgatcagccaagtttagagaccactaacttctggcacaaactgaagaggggaggggtgggaagattcctaaaactgt<br>cctagaaatgctattatcatacaaatagaattggttaattagatacaagtattgtcattgacaaatacttcctaggagaaacagctagcacagggcaaac<br>ccagagaagaaagggcatgagacaggagggagctgaagaggaaggtcactgggtgccagagactcatttcaacaatcccacagttttacctggggccaga<br>ccgtgcttaagacccaaaaccagtttatgtcaggttgatgataggttaaaccaacacatctgttagccaattcaaactaatttttt<font color="green"><u>AAAAATCAGCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGTGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATCAGCACCA</u></font>aaaactaattgagctcaagataaagcacacagatatggcaaactcccagagaaatgattttaaggaaggatagcaaatttcaaaatct<br>aactgaggcatggtgacccagcaggactgcagaggatcagggtacctccaaagttgtgaaaatcctgcagacaacaggctaaagaaaactgattccaaga<br>ttgctgatggaaccaagcagggaggggttgagactgcttttgtctgcaataaaattttccactggtcacacatttcttttttcttttctgagtttcaggg<br>tgggtgagcagatggctggagcattggaagagagtgagttcaggaatctcactaagaagggcaaagtaagatgaaagttttggggtcaggattgagac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	470	158	NA	intron:DIRC3:NR:026597:1/13
0	chr2	50708901	50709205	1000145	0	-	Ya5ACA807; RIP_Alu_chr2_050_01	ATCTTTTTGGGGGCAGTTTT	TCCTGTAGTGAGTTTTGGGGA	SINE	Alu	Ya5	aggaatgtcacaggtatttaaactggctgtcatttggatgagacaaaaggaaaaaactgaaactgtttgtacccaatttttacctaaaggtaaatttaaa<br>aatttaaagccattagatgaagttagcttggcatggatttatatccctgaactcgcaccccatctgccacactgttactggcatagagtgggtttaaaag<br>aagatggattactctacacgctcccatagcaatttcactttattatttcccatttagcatgcccaccaggtttcctcacagtctgttggccaaacataca<br>aacaaaatctgtcttcctgttgtaagtttcagaatcatactttaaaaaaatctttttgggggcagttttgtttcaaaatttaaat<font color="green"><u>AAGAAACAAAAGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAACAAAAGTTC</u></font>agaatattgaaagaattatatgttctgttgatatggataataacaatattaactccccaaaactcactacaggaaaacgt<br>taaggtctaaactcttatcttcttggggttgcccctccccaacttgtcccacgtaagtgctggtttgtactagattgggccatggatacatacaagtgtc<br>tgatttatctctttgtgggagacaattgaaaagtaactgctgtatctaaaaatcaaatgttgacttttggtaaaaaacattttgataaaatttgatttaa<br>aaagttttgaacataagaattctacttatgtatcagaatttgaatacctaatatttataattatggaagaaaattgactttgcctttatgagattactcc<br>attat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	445	125	NA	intron:NRXN1:NM:004801:15/22
0	chr2	107926397	107926722	1000146	0	+	52792;Ya5ACA814; RIP_Alu_chr2_107_01	TCTCGGGAAATTAGCAATGG	TCAAGAGGCTTTGAGGAAAAA	SINE	Alu	Ya5	acaaaatatcatgtcatcagcaaagagggacaatctgagttcctctttctcaatttggatgccttttattttttctcttacctgatttccctagctagaa<br>cttccagtaccatttgaataggggtgatgaaactgagcatccttgtcttattccaattatgaaagaaaagactttcagactttcagctttttcccatgaa<br>tatgatattagcagttgatttgtcatatatagcctttattttgttgaggacattgactaactcagttgaacaagattatgttagaaagaagaaacaaact<br>ggaatgggttgttataatacttaggtggtaagataatgagttcagtttgagtccttggcaaatctcgggaaattagcaatggctt<font color="green"><u>AAGAAAGAGGGTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGAGGGTCTT</u></font>aaaagcaattttgagtcctctgttttttcctcaaagcctcttgagtagtttgaaatgtg<br>caagaaaattatggcttgccgggcgtggtggttcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcgcaaggtcaggagatcgagact<br>atcctggctaacactgtgaaaccccttctctactaaaaatacaaaaaattagctgggcatggtggcgggcgcctgtagtcccagctactcgggaggctga<br>ggcaggagaacggcgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggctacagagcaagattctgcctcaaa<br>aaaaaaaaaaaaaaaaaaaaaaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	423	82	NA	intergenic
0	chr2	231996196	231996500	1000147	0	+	Ya5ACA868; RIP_Alu_chr2_231_01	TGCAGGAGTTTTGCTTTCAG	TCAATGTTTCAGCAGGCAAC	SINE	Alu	Ya5	gttgaagaaaccagttatctctgttttgtttcccatggtatgaattttgctgagtgcatctttacatgtagtttaatgtgttgtttggtccttcacattt<br>cctgtaaattgacagttgaatctacaagcttgatcacattcacattttttttagggtggtggggctggcggtacacacagttatttccattttcatgatg<br>ttagcagtcgttgataatcatgctgcgatctattcattatatgttacaaaatggtgatataattttatcatttattaactgttcctttaaaagtttatat<br>catatatctctgtgtgtatatataaagattaatgtgcaggagttttgctttcagtgaatgtttgcattccaatcattgctt<font color="green"><u>AGAAAGTTTTTTTGCCCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAAGTTTTTTTGCCCTT</u></font>ttagagttgcctgctgaaacattgaaataaacatataagaatattatggttttactgtactcttgaaaagattgaa<br>tgtctaaactaatttaataaagaatttctcatttcttgtcttaacacttgttttttctaaagaatgtgtcagagttggaactgttgttagattgagacac<br>tgtcaggttttttatatgcttttgagtttatagccttcacagcctatttcagtctttattgcaattaactaggtaaagttctgcattaggctcctggtat<br>ttatgttctcaggcaaaattttttctaaacctcatggaattgttagtgccttttgggaagcaaaacttaagtctaacttctatcccctttcagaaaactt<br>ttcta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	415	91	NA	intergenic
0	chr2	174151745	174152045	1000148	0	-	Ya5ACA924; RIP_Alu_chr2_173_01	AAGGGTGTGATTCTTGGAG	GGCAATATACGATGTGGAAG	SINE	Alu	Ya5	ttagacatataaaactccttctacataacctccaacctgtcacaagcaagggtgtgattcttggagctctagaagtttattataataaaaaattagagct<br>catgcctgtaatcccagcactttgggagactgaggtggggagatcacttaaggctgggagcctgagagcagcttgggcaacataaggagaccccatctct<br>acaaaatttaaaaattagctgggcatggtgacgtatgcctgtagtcccagctactcgggatgctgagtggagaggatcacttgagcccaggaatttgagg<br>ttgcagtgagctgagactgcaccactgcactccagcctgggcaacagagcaagactctgtctccaaaacaaacaaacaaaatggat<font color="green"><u>AAAAAGTTAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGTTAAAGAG</u></font>aattcttccacatcgtatattgcccattacaaaagatttctgctgatctctatcttcttcaggggagcatggctattttctttca<br>atttattgctatgacatgtcaggaggtctttctagctcagatttttttccctctctattaccaaataaagcaatttgtcttattttggatcagaataata<br>atggtaattaggtcataaggcatattgctgtgaaagtaaaaattcgatggagtatctttgaagcatgttaccaggatactttggagttgggtttgtggaa<br>aacatgagcttaaattaaggtaaagttttgatcctcagcagtactgcttgaacctgataacaaaactgtcactgaatgccagtgcacacagaggtccttg<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	693	377	NA	intergenic
0	chr2	194398509	194398833	1000149	0	+	Ya5ACA949; RIP_Alu_chr2_194_01	CTTTGGTGTTTGCCAAAGTT	TGGCACAATTGAAACAGGAG	SINE	Alu	Ya5	cccatatactcaaatgatgtacacaataatgtttcttccatagataactattgaaaatctgtagaatctcaggtaaaggttatagaaacggttcctgtga<br>tgcaaggaaatggaagagaattttaggctgctataggctgcaagacagaacagaataatattctgaagagtgtagtcttggttgattaggattatgggag<br>attcttgaaattaaattatatgaataaatttatgaggaaaaagggtcttgatgttttcactctgatgacaatgtttgatgtaaagataataaggtggaaa<br>ttataagctaaaatgttatctactttggtgtttgccaaagtttaaaagagatgaacagtgagatacaggaaagacaacttgattt<font color="green"><u>AAGATATTTCTCATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATTTCTCATT</u></font>atggtcatactttaactttctatagttcagtatttagtctcctgtttcaattgtgccaga<br>tgtaaattttcatttttttttcattttggattagaaccaaagatatatgttcagataaggcgaacttctatctatggaactgacttataaaaaacagaat<br>gtcacacaataaaattacttatttccagtgttatgaaggtttttaaatcttttccagaacactttttctttatagaatggagaaaacaaagaaaaaatat<br>acatacacacacacataatttgaatgtatataacctcatccattaaatgttgatttcagatacggaaacatcattttgtctctcctggctcttggttact<br>agctaatagccaatcaggatcatat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	476	136	NA	intergenic
0	chr3	17948554	17948858	1000150	0	+	Ya5ACA1003; RIP_Alu_chr3_017_01	AGGGTCATCGTCAGGACAAG	TAGAGGCCCATTCCACAGTC	SINE	Alu	Ya5	agcccagcttagaccaagtgtccctgggctgagctgcagatctctgaaaataaatgaatgtaggtttaatccactgacatttcgggtagtttctttggta<br>gcatttttgtcgcaatacataggtagactggggtcaacatctgatctctaaaactcaccagctgtgtttttgagctatacccacccttttggatggtact<br>cttacatttaaatggggcaagtagtatttatctttagggtcatcgtcaggacaagaaattatacatgtaaaatgctgagcttggggcctctatttgtcca<br>tttgcattgctataaaggaatacctgagactgggtaatgtataaagaaaagacgtttatttggctcacagttctgtaggctgtat<font color="green"><u>AAGAAGTATGGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAGTATGGTGTC</u></font>agcatctgctcctggtgagggcttcaggaagctttcactcatggtagaaggggaagtggagccagtgtgggcagatcaca<br>gggggagagagggaagaagaaagagaggagggaggagtgtcagactcttttaaacaaccagctattgctggaaagaatagagcaagaactcactcattca<br>tcatttcgagaatggcaacaagccattcatgtgggatccacctttcatgatccaagcacctcctactaggccccacctccaatattggggggtcaaattt<br>caacatgagatttagaggggacaaatatctaaaccatcaggcccttgaagtttctgctatagcacctggcccatgcgcccaatgtgtgttgggtgcgtga<br>ataga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	957	637	NA	intergenic
0	chr3	59125234	59125549	1000151	0	+	Ya5ACA1054;pAlu3-58979974; RIP_Alu_chr3_059_01	ACATTCTCATCTGGGGCAAG	GCTGCTAACAGGAATCACTGC	SINE	Alu	Ya5	gttatagattgacaaaaagacacacacacacacacacacacacacacacaggcgcgcgcgcgcgcacacacacacacagccagtgcctgatttaaataga<br>gaaggacatagaaactaattggaagtaggatggccacagatatcatggcaaggcttattcatggcccctagttccctgttgaagcacaacaggtcctgca<br>gactggggcacttctgttataccatgtatctttcatgatcaaagcttacatcatttttccagcagaacttttatttctgtttaagggaaggttgataagc<br>cttatgcttttcattgtgaatcatatatcatcagcaggccacattctcatctggggcaaggacatagtcacagaacagatgcttctaaa<font color="green"><u>GAAGATCTTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>GAAGATCTTTG</u></font>cctccagttgccagtgctctggaaggccaatttccatgcacattgttacttgaatttgcatttttctgactag<br>cagtgattcctgttagcagcactgtgagaagatcaagttggaccgtttagttgtggaaaattataacgtcaatagttttaggtcttttggcctgctaaaa<br>ctcttcagggaaagtaaaggctttgtcgccaactttctggtaactgcatgggggaaaaatctggaagtcttaatgtatagtatggatacatttaatgaat<br>tgttctgttttcagtatgatgccccatcccattctcaactacacttggtgtcctcttattttaccatctccaaaatttaaaaaataagctattttgccag<br>gataggagagggtatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	480	153	NA	intergenic
0	chr3	127330531	127330843	1000152	0	-	22588;Ya5ACA1070; RIP_Alu_chr3_128_01	CGGATCCCTCAAGGATGATA	TCCCCAGCTGACTTCTGTCT	SINE	Alu	Ya5	aagggtgactcatctgaccatcctaaggattaggccaaaattcaaacctaaaaagtctggcttcagactgcatgctgcttctgttagttctttaaaatct<br>ctaagtgttgggcatgaccctgatctctttaatactttaccagatcagtgtccagggcccacggaaggcaggcagggccatgaaactgacagagtagggg<br>acggggtaaacctggggacacaggccctacctgcaagggcagctatgcctcagctccgtcagcgttaccagagaggaacacagagccagcacccacagat<br>cttggattttcaaaaagcatccggatttctatgtgaagtctccggatccctcaaggatgataactaactcaaaataaaaacaaatac<font color="green"><u>AAAAAGTCAGCTG<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTCAGCTG</u></font>cagaagcctgcagggcttcctgctggagatggaatctgcagaagacagaagtcagctggggacaagtgagggag<br>aaggtgctctatgtagacacaaatagcaggcatcaagacacgggagcggggtagggctgcctccatttggggaacaagtcgttttggaacctggggctcc<br>agaagcacatggggatggcccgggcagatgccttattagtgcccaggcatgccatgcccgccacacgctcacctatgggtctctcacctcttcaatcaac<br>agagtgggagattagtggctgaagctcaaggcaaaggaagagaaggtgccagaagagagttcctcaagcatgcagctcctttggcgtggtaggcacagac<br>acagataatcatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	442	120	NA	intron:MCM2:NM:004526:8/16
0	chr3	154648374	154648679	1000153	0	-	4679;Ya5ACA1100; RIP_Alu_chr3_156_01	GCATCCTACAAAGCCATT	GCCTGGGCAATAATTTTCAA	SINE	Alu	Ya5	tcattatttgtcaacagacaaatgggtagatgctaggagtaagtagaggagtaagtaaattcagagggaattttttttttgaagaaaccggggcaaggtg<br>agggtggctttagtttatgatattacccatgctcgctattatgactgtgcttcctgtactaatttccgtatctgttcaagctgaatccacatgcctgttg<br>attggtactttgcttggtttcagggacctctctcaaatgtagcctagagcttctgaataaaaaatatcaagttaagatatttgatgaaagtttttttcta<br>cttgtttgccttgatttatatagtgcatcttacaaagccattgaaattaaaccacatatccataatctgttaagaaaaggtaagt<font color="green"><u>AAAAGAAATAAGGTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGAAATAAGGTT</u></font>atatgaaattgggactattttgaaaattccaggaagtatgctggcatatatttctcaattgttttctcaacattttgaa<br>aattattgtccaggctgtagatcatgttgtcagtggcttctccccatctaataaaatatgaagaccctctccaccttttggaggaaaatgctggtatctt<br>ggagtttgatactaccgtgtagaaaccaatatactaacttgtaagagacaaaagtttatttactccacgtattgttgaaattttatcataaaaactgata<br>ttctttgggaaaatgattataaaagccacaaattttaacatctattcggttgtaatttaaaaatacctgaattttcagccatttgcagtggctcatgcct<br>gtaacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	492	170	NA	intergenic
0	chr3	176143033	176143034	1000154	0	+	Ya5ACA1130;pAlu3-177545061;1104685598701; RIP_Alu_chr3_177_01	AAATGCCTAGTAGGAAAAAGGGT;NA	TCCTTCCCTGCATTCATTCT;NA	SINE	Alu	Ya5	gttccctaacacaatctattacacataatgaataaaaattaatctcgtggattaaagagataagtcagacacaaaactgtaaaacaggaaaggaaaatga<br>taattaatttaccttataaaattaaaatcttcctttagaaagaaataattaatgaagttaaaaacaaatgacagtttgggtgaaaatatatgtatcttac<br>tcaaaaggttgatttctatgagaaagaacttatataaattaacttgaaaagaaaaaaaaaatgcctagtaggaaaaagggtaaagaaatataaacaggac<br>actcacagaataaggaatgaaaagctactaaatgtatcaagcaattatgagaaatgtcaaaaaagagagattttttccccctgatt<font color="green"><u>AAAAAAAAAAGAAA<br>TT</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAAAAAAAGAAATT</u></font>aaagactaaagaatgaatgcagggaaggattcagaagaactggccttgacatgcattgttagagtgaatgtg<br>gtccatggggtctaaatggagacagtctagcagtttttactacattctaaaatgcatcgccgggattggtcgctcactcctgtaatcccagcattttggg<br>acgccaaggcgggtggattgcttgaggtcaggagttaaagaccagcccgaccaacatggtgaaaccctgtctctactaaaaatacaaaaactagccgggt<br>gtggtggtgggtgcctgtgatccgagctacttgggaggctaaggcaggagagtcacttgaacctgggagtcggaggttgcagtgagctgagatcgcacca<br>ttacactctagc	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr4	59607606	59607909	1000155	0	+	Ya5ACA1161; RIP_Alu_chr4_059_01	AGTGGGAATCACTATGATGG	GTCTTGACCTCGTGATCTGT	SINE	Alu	Ya5	tgtattaataaatgacacattagtaatgtgtcatttattaatacatgtgtcatttattaatacatgtgtcatttattaataaatagttttccagggtcat<br>gagtttagggacaaagtctgttttcagtcattattgttagttgttttctgagttcatctctattaataccttggaaaacacagccaataacaatgaacat<br>acagtattaatactctgtatttctacctatagcctcagggttttaagattactagacattatctgagtttcaaatggtcaaaaacaagatttgccagaag<br>ttttactatcataaagtgggaatcactatgatggcctgggttcaagttttcacagcagaaacttatgtaattgtaagtcctctt<font color="green"><u>AAAAAAGACAACACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCAGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAAGACAACACTG</u></font>ctgggcgcggtggctcacgcttgtaatctcagcactttgggaggccaaggcggacagatcacgaggtcaagacatcaagg<br>gcctccttgtcaacgtggggaaactccgtctctactaaaaatacaaaaattacctgggtgtggcagcatgcgcctgtagttccagctactcgagaggctg<br>aggcaggggaatcgcttgaagccaggaggctgaggttgcagtgagccgagatcacaccattgcaatccagcccggcgacagagtgagaatcggtctaaaa<br>aaaaaaaaaaaagacaatactaaattataaatataaaattaggtacaaaatcaagtacttgtttataatgagaaaataaataaattacaaaataattaca<br>aaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	479	159	NA	intergenic
0	chr4	66755391	66755655	1000156	0	+	Ya5ACA1168; RIP_Alu_chr4_066_01	TGCCTTATACGGTTGTTAACCC	TTCCTTTGCTTTCTGTTACCTG	SINE	Alu	Ya5	ataataatcaaagaatttgagcaattattcaataatcaatgaatatcactatttagtgttaagcacccttccaagtacttggtaaaacagataaataaga<br>cagttttttacaaaagaaggtaactgtctaatgaagaacacacatacacacttaaacaatatattacattactttgtaaacattttctacaatagaagaa<br>gtcattagtgctataaaaatacaaatatgatctgtatgatgcggcctggtgactctggaagattttattctcaccttcttcaaaaaatattgaggaccta<br>tttacatgccttatacggttgttaacccttaggatacaaagataaagcagatctcctgcacttaatatttcatggtctaaaagtc<font color="green"><u>AAGAAAAACAAACAA<br></u></font><font color="red">TTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAACTTGCAGTGAGCCGAGATCCC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAA</font><font color="green"><u>AAGAAAAACAAACAA</u></font>atatatagaaaaagtaatga<br>atgttatagtggaaagttacgtaacaaatttatgggataaacatgaatattaaagaggaagtttccaaaataaaatatcaggtaacagaaagcaaaggaa<br>cacatatggaaaaaaacaaatttcaggagaatacaatgtacagaggagtgtttccagcagagcgtgcctataggaattagccaaggagaaaactagagat<br>atgggcaaggccaggtcaggagggccaatgaaactatgattgagaattttggatcttttttttagctcattctttatgtttttgcttctaaattttcttt<br>cacataagaagcaaacattctgatattttgggttacaattatacctttgaggaaagttttctaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	214	NA	intergenic
0	chr4	263969	264238	1000157	0	+	Ya5ACA1185; RIP_Alu_chr4_000_01	CAGCTTAAAGGCTTTTCCACA	CCTTTAGACAGTCCGGAAACC	SINE	Alu	Ya5	gcagagcttgcagtgagccaagatcgtgccactgcactccagactgggggagagagcaagactctgtctcaaaaaaaaaaaaagagagaatttgaagtct<br>ttgccacattttaatttttcatatggcttctcatcaatatcatttatcttatgtttagaacacagtgaggtgtggttaaaagctttctcatatttttcac<br>atttctggagtttctctccattatgaattatcttacgattagaaaagattgaggaacatttaaagactgccacattcttcatattggtaagacattcctc<br>cagtacgagttctcttatgtttaagaatgctggagtacagcttaaaggcttttccacatcctttacacttgtatggttttatctccagt<font color="green"><u>AAGAATTCTCC<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTA<br>GCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT<br>CCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCTCC</u></font>tatgtacataaaggtttcc<br>ggactgtctaaaggctttgccacattcttcacatgtgtagggtttctctccagtatgaatcctatgttcaattagggttttggagctattaaaggtttta<br>tgacattctaaacatttatagggtttctcaccagtatggattctcttacgtttagcagaatttgaggatgaggtaatgactttgccagattccttacatt<br>tgtaggtgttctctccattatgaattttctcatgtttatttatgggtgaggaccgtttataggctttcccacattctttacatttgtaggattcatctcc<br>catatgaattttcttatgttcactcagggttgtggaccatctaaaagctttgccacattcttcacatttg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	378	96	NA	downstream:ZNF732:NM:001137608
0	chr4	98181278	98181582	1000158	0	+	Ya5ACA1204; RIP_Alu_chr4_098_01	TTCTCATCTAGAAGCAAAGGATGA	TGACCAGAACAAAACTTGCAC	SINE	Alu	Ya5	tttttaacttctttgccatgggttcaaacttcctcctttagcatggagtagtttgatcatctgaagccttctttgcctcttctagctaactataaaaagt<br>atttattgtttttaaaatgttgcacatctttaataaaataatgttggttaaaggagttttttattttgaaaagtactctgtaaatggcagtcatttattc<br>acctatccattcatgcatttatttatttatttatttattgctttattctactaaagaatgaagtcatctaaatcagtagaacactgattaccaaacctct<br>gtattgtttcagatgctatagtgacttctcacttctcatctagaagcaaaggatgagtaatatttatgacaacctattcatttt<font color="green"><u>AAAATTATACCCTGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAATTATACCCTGCT</u></font>aattcaaatttggttttacatgtgcaagttttgttctggtcactttttaagttatgtttcagtgagaaataatcagatt<br>gaaacttgcaaatatttatcaataagatggtcagtttatatagtgctttaacttggcagcacctgcttcaatttctcctaacttcctgaaaaagcttgga<br>aaagaaatacgtcattcgtatttctgttcaagtaacattccttaacgaagccttcctgaccttcctgtgagaaatgatggtctttcctctttctccccat<br>gttaaggtactttccaacttggccttattttctttaaaacatgtatatcaatgggaaatcatcatttttgtgtatgtattatttaccttctttccaacaa<br>ggtct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	431	110	NA	intergenic
0	chr10	60984922	60984923	1000159	0	+	Ya5ACA1250;pAlu10-60877322;1104685134451; RIP_Alu_chr10_060_01	GACCTGGGCCAAAATGAGTA;NA	TTTCTGAGGAGGAGGAGGAA;NA	SINE	Alu	Ya5	ggttttctttttgctcttcacaaaatcaaaacaattctcttatttttgttgaaattttggtagtctgttgaatgaaaagattgagaaatattgactagac<br>ctctaaagccatactcagaaagaggagtatataaatctataacataaaaatagtaactctgctatttactcttatctactaatattataataaactgcat<br>aagaataatctggtgaatgctgccagaaatgtcaagttaaaaaaccaaaaaggatgaaaagtttaaaagtctgataaaaaacttactgttcttaatatat<br>attaaagaatttccaagtaagatggtacttttgggcatgagcatcaaactatcccctccataagacctgggccaaaatgagtaa<font color="green"><u>GAAATGAAAATAGAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAG</font><font color="green"><u>GAATTGAAAATAGAGG</u></font>aaaactcttcttaacaataaaacttatgtaaggattccatcaacattatactccctgagtaatatgtgtc<br>atataatttatccatggaatcccattgtaaaagtttgtattcctcctcctcctcagaaaatcacacagtattgcaggaaaaatagtaaagaagctcttgg<br>aagatctgtgctgtcaccctgtgattggatagagtgaaggatggacagctagcaacttcacttggaattttccttgttgccatggattaataattattga<br>aagcagatatgctaggggccacagaaagtgaagctttatctcctgatggtaatgaggcttacctctaaagtggtaagacacttctccatgggaatcagca<br>attcaagggaagaa	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	496;NA	170;NA	NA;NA	intron:PHYHIPL:NM:032439:1/5
0	chr4	141926941	141927241	1000160	0	+	Ya5ACA1259; RIP_Alu_chr4_142_01	TTTTGGAATACAGCCCATTTG	GCACATTCCAAGATTAAAGTGG	SINE	Alu	Ya5	caagtattgaggaattccatattcggtgttaagcagaggagaaggagcctacagatgagtcagaaaagatatacccaagagataggaggaaaaaccaggc<br>aggaccaatgctacaattaggcctgctaagagagaaagcattgttttcagggaccagaactgtaggataagtaagcttccttaaggtggtatgagggtct<br>atgcactgcacaagtacttagaatatttttcctgaattgcagataaaacctatgagaaatgtggctacaacaaattgagtgttaaccaacccatcttaca<br>aattgatttttggaatacagcccatttgtaatttgagtatatcatgtactatgacagaggaacacgttttactttagttagataagaa<font color="green"><u>ATATTTTAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA<br>C</font><font color="green"><u>ATATTTTAAAAG</u></font>aatggaactatttttttctaataccactttaatcttggaatgtgctataatttgaatttctatttttaaaagctagaatgaagagta<br>ggaaggaaattatatatatacacacatatatatacacatatatatgtgtatgtatatatatacatacatatatacgtatatatatacatacatatatacg<br>tatatatatacacacacacacacatttctccatttcttgggcatttttcttttgtctttgaccactttagctgtcagttctgtaatctcctataaactaa<br>ttgaactcttccttctgtgtgacagcagtaaaattgatcaacaagatccctgggaaagtgacatctggcaacaaggaacaatggaagggaatacagctaa<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	451	138	NA	intron:RNF150:NM:020724:1/7
0	chr4	166895289	166895589	1000161	0	-	Ya5ACA1274; RIP_Alu_chr4_167_01	AAGCCAGATAACCTTCTCGGT	GCTGAGATCAAGAGGCCAAC	SINE	Alu	Ya5	acataagcaggtactgccacggtattttggcaatggagatttggagctggcaatgagaatcccatcctgggttgttggagcttcagcaaaaaatagcctc<br>tgggatataatataagtataattattaaatctttctcttgtactgatggtaaattgtaaaaataaatgctggtgttatatatccagagtttgtgcaatac<br>agggaaaatagtaactctaaggatagtaaattgggtagctaatgctaaactccattaatgcttgttaaatgttaacaaaagattggtcacaattaatgaa<br>tcattaaaagctatgagtgaaagccagataaccttctcggtaatatacaaaaatactgtcatctcctacagcttgatagcagagaaaact<font color="green"><u>AAAGATGAGG<br></u></font><font color="red">CCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTATGAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGATGAGG</u></font>tccaggacttaatcctaagagttacagagtgcagttggcctcttgatctcagcaggtcagctatgccagggtacagttctactttgaaa<br>cccagacacatgggatgaaaaaatataatcttgaaactccagacttctctgatcctattaagaactaacgctggttgggcacagtggctcatgcctgtaa<br>tcccagcactttgggaggccgaggcaggtggatcacctgagatcaggagtttgaaaccagcctgaccaatatggtgaaaccccatctctattaaaaatac<br>aaaaattagctgggcatggtggctcacacctgtatttccagttgcttggaaggctgagacaagagaattacttgtacctgggaggtgcagattgcagtga<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	444	133	NA	intron:TLL1:NM:012464:1/21
0	chr5	125400000	125400301	1000162	0	-	Ya5NBC18; RIP_Alu_chr5_125_01	AGACCATCTTTAAGAGGAATACCATGT	GAAACGTAAATTTGTTAATAAAGTGGTGAC	SINE	Alu	Ya5	tttcctcatttttacttgctaaacttatgccttcttcaagagttactctctttgctagtgctatgggggcagcattgtctgggtttatgattctggatta<br>atgccagtgtctatattaataagaaaggaagggtgactctgtcccgatatttagcaggggcagggagttccctcagtttatctgacttgacatggtaaaa<br>aaaaaaaaatgaatgaacatgttagtatgaatagctataaagttgggagtctctaagcaaggagctccaatacagtgatcaatgtcaacaagaatgttgc<br>catagcatagaccagtatgctttttaattgatggagaccatctttaagaggaataccatgtggtagtaacaaaggcaacttcagctg<font color="green"><u>AGAAATGAAGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGTTAACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCGTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAATGAAGCTC</u></font>atagtacaatgcattatattgtacttgctctcttttccctgtgcacatttttttgtgtgtaacatgttctgtttgctttagcggg<br>tcaccactttattaacaaatttacgtttcctgtttctttaaagaaccactttcaccctgaccacattgctagagtgtcactatgttccctaatcaatttc<br>tgtaaacacataaccatggggtccatacagcttcaagagtcacatttgacatgccaatcctgctgcatgctcctggctgctttggctgttgtgccacttg<br>agcagtctcgccatgttcatagggggtttgcattaatagttacagtttttttctgtgcaagtacctctcatcatcttctgtcagtgttttgcttatttgt<br>tt	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	495	180	NA	intergenic
0	chr5	131960240	131960592	1000163	0	+	Ya5NBC1; RIP_Alu_chr5_131_01	GGAATAGGAGATCCAGTAACTTC	GTAGTGTTCAGAGACAGCACTTTA	SINE	Alu	Ya5	ttaacattacaatgttccctgggtccaaaatggctcatagaattatatgcctgcaccaaatgagaacttttgttttttaacttctttgaatattgccatc<br>tctcctagatattagatccagcagtttaaagtggttagtcttggaatttaaggtgctgaaacaagaacataagcaaaacttaaggaattcttgcccagta<br>gactacacatacatatatttgttttttgttttttggttttttttgcctttaataattctttttagtcttctcagctacctcatttatgcctttaggggac<br>tttttagtttttcttagttctttaacaacagatgctgtgtatctaatagacttatcaaacattcattgagcattaaggaataggagatccagt<font color="green"><u>AACTTCT<br></u></font><font color="red">AGCAAGGATATTATAGTTTATTTGAAGAGACACAAATCAAAACAGATTTTTGTTGGTAAAAACCTATTTTGCCAGGCTTAGTGCTTACGCCTGTAATCCT<br>AGCACTTTGGGAGTCCAAAGTGGGTGGATTGCTTAAGTCCAGGAGTTTGAGACCAACCTGGGCAACATGGCGAAACCCCATCACTACAAAAAAATACAAA<br>AATTATCTGGGCGTGGTAGCACACACCTGTAATCCCAGCTACTCAGAAGCCCGTGGCGGGTTGCAATGAGCCAAGATTGTGCCAGTGCACTCCAGCGTGG<br>GTGACAGAAAGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAATCACCAA</font><font color="green"><u>AACTTCT</u></font>ttttggaataagataagttggttgtgatggaaaaataaaaa<br>tggatattaaaagcaagacattggactttgtataaaagtccaacatgataagttttaccttttttaaaaagcctcagaagtccataatacatggttaaaa<br>gtgctgtctctgaacactacagatgtccagattttgaattctttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcg<br>ggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcccg<br>gctaattttttgtatttttagtagagacggggtttcaccgttttagccggga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	544	185	NA	intron:RAD50:NM:133482:21/25
0	chr5	22796626	22796928	1000164	0	-	1159;Ya5ACA1318; RIP_Alu_chr5_022_01	AAATCATGAAGAAGAACAAAGT	TGTTGGCCATTTATATGTCTT	SINE	Alu	Ya5	agctctctggatctttttttttttttttttttttttataaaggcactgatcccattcatgggggctccaccctcataatctatttacctcccaaatgccc<br>ccctccgaatactaaagggttagaatttcaacataggaatttgagcgtgacacaaacattcagtctacagcaaatagtcccctgatttttcattaggctt<br>cccttgctttctatttttgacatggataagaccacccattattaactctttgcaatgtgttgtgagattagacacagagtcagttttaaatcatagtatt<br>attttatgaaacttgcttttcctcctatgatataattccttactattttatgtgagattaaatcatgaagaagaacaaagtattt<font color="green"><u>AAGATAAAAAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGATAAAAAATCTG</u></font>aacagaagtttttcaacagaagacatataaatggccaacaggaatatgaaaaaaatgttcagcatcctactaataactgaaa<br>tgcaaatcaaaaccacaataaaataccaccttactccaattagaatggatattatgaaaaagacaagataaatgttgtcaaggacatgaagaaacaaaat<br>tcatgcactgttggtgggaatgtaaattagtaaagccattatggacaagagtatggaagttcctcaaaaaattaaaaatagaactaccatatggtccagc<br>aatctcataatggggtatatatccaaagaaaatgaaatcggtattcgaaagagatatcagcacttgtatattattgcaacacctttcacaatagccaaga<br>tgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	400	81	NA	intron:CDH12:NM:004061:1/15
0	chr5	168394446	168394743	1000165	0	-	Ya5ACA1370; RIP_Alu_chr5_168_01	TCATCTTTTCTGCCAGCCTT	CTAAGCTGCCTTGCATTCCT	SINE	Alu	Ya5	aaggaatggcatatttaatgggaggggagagataaatcattcttaatctttatgttcagggaggagaatggtaaggaatcttaaaaacccactctccttt<br>ccaaggcctggggagagccatgaggaaggaatttgaatgcctgccagagcaggtgagcaaagcttgggaagagaatctggtgcaggcacgaaagtgctag<br>caggaggtacgagagtgtctgaaatctctactggagagtgcagacatcatcttttctgccagccttgcatggtgggaagtagagtgggaacccgaggctt<br>tattcttcctgcagatgaaggctgaccacaccagatattgtgattgtagagggacaggtgcaatgaaaggaatgaaaaatccctc<font color="green"><u>AAAGATTTGAGATGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAGATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGATTTGAGATGG</u></font>cagtgccagaggaatgcaaggcagcttagaaaaattatgacgcaagtgttatatatttactgtagagaagttacatgagacagagaa<br>gccaaaaaagaaaaataatttaaactcatgattgttcacctagaaataatcactagcaatattttggtgcaattttaccccagtgtgtgtctctcttata<br>tacacatgcacacacacatttatagcattggattatactatatgtactctttggaaacctaccttctcactttaaaaatatatacagagcatttttccaa<br>attcataaataacatcctttttaatggctattgttcttccattgtagtaggtgggccatgacaactagctcctacagttgggaaatttaggtggtttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	496	183	NA	intron:SLIT3:NM:003062:4/36
0	chr5	109297107	109297408	1000166	0	-	21141;Ya5ACA1376; RIP_Alu_chr5_109_01	TTTCAGTCTTGGACCATTTCAG	TCTTCGACTCATGTTAGGCAC	SINE	Alu	Ya5	cttcgctatcctggaaacagactctcttaataagtgctgtaattatataattcttaagttccaggctccactagcaagtttgagaataagggaagtatca<br>caaaaaaataaaaagcagaagaggttgcaagacccaaggaaacaccactcagctggttttctatgtatcaagagttatgcaacacaaatgttctcactca<br>gaaatggatcctgatggcattacttttgtactgaattaagttccttcaaaaaacagtttcagtcttggaccatttcagttatgtgagtcaataagtcttt<br>ttgcttaagctaggtcataaggtatatgcaatttatgcatctacattataaggctttcataaataactaaacaaggtaatggat<font color="green"><u>AGAAAGTGCCTAACAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAAGTGCCTAACAT</u></font>gagtcgaagatacaataggcacagttaaatgtgagctctcttcctctcccaactattttcactttattaaatccacacttaa<br>attggacattaaagtttaaattgttattagtaattccagtaaatttcattattaactcagttaattaccatttctcctcttgtagggctctgaaccctct<br>tccatcttcttatgctcaattgcaggagagaggaaggaggaagaatggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaggagggagggagg<br>aagggagggagggagggagggaaagacacagaaaacctctagccatatgcacaatctctctctcttttacctgtcctattggaaatacggactaggactt<br>ca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	472	154	NA	intergenic
0	chr5	133762623	133762917	1000167	0	+	Ya5ACA1400;pAlu5-133793787; RIP_Alu_chr5_133_01	AAACTGAAAATGCAGGTGCC	TTCCTCTGAAAGGCTGGAAA	SINE	Alu	Ya5	ccaccgcgcccagccttccagctggtccttatttatcctccagcactttcagctgttctgttccgattttgatccatgcaacgcgggggatggggggaca<br>atccaacaggtgaatcctctcccacccccagaaatggctcaaggagacctcctagtgggttacaggaccactgagccatggaccccagggtcacctttct<br>tcccaccacagtcaagctcagcacataacttaaatgcatagtggtcccggaagtgtcaaggagaacaaaatgcccatttttttccctccatacacagcaa<br>aactgttctaatacagccaaatgaactggagaagcagttttattcttgcccttcctgccgaggaaaaactgaaaatgcaggtgccgagaaaat<font color="green"><u>ACTAAAT<br></u></font><font color="red">GGAGGCCAGAGGCGGTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAA<br>CATGTTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCG<br>CTTGAACCCGGCAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAA</font><font color="green"><u>CCTAA<br>GT</u></font>agagagtgctcttggagcagggtttccagcctttcagaggaaagttggaaaacgctaaaagttttcaaactttgggatcttcagctcttacagaagta<br>tctaaatcccagctacttgggaggatcccttgagcccagaagtccaaggccagcctaggcaatgtggcaagacttgtctctaaaaaaaaaaacaaaacaa<br>acaaacaaacaaacaaaaaaacgtaaattctaggttgggcacggtggctcacgcctgtaatcccagcactttggaagaccaaggcaggtagtttacttga<br>ggtcaggggttcgagaccaacctggccaacatggtgaaaccccctctctactaaaaatacaaaaattagccggacatggtggtgcgttgcctata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	677	379	NA	intergenic
0	chr6	12664204	12664510	1000168	0	-	52592;Ya5434; RIP_Alu_chr6_012_01	TGATCATGACCTTCGTTGGA	GTCTCTGGGCCTCCAAATCT	SINE	Alu	Ya5	cattacccccttagcaaaacctttcatgcttcccacacctggttatgacaccttttgctataagctgctttagaccattgtcagaactcttcttgggaca<br>tttctcttcagagcatattgtggtaaccaatgaacctgtgatatctcccacgggctgctagcatgttaacaccacatctgatatacacctgtgtctgtca<br>tggtacttatcctagagcttcacaccaggggtctactttttttagattgtatacttccattatatttaaaaaacatgttctagcatatatcactgtcgtg<br>ggttgaatatggtgaagtcctgaacgccgttacttgtgatcatgaccttcgttggaaacagggtttttgcaaatacattcaagtt<font color="green"><u>AAGAAGTCATGCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGTCATGCTGG</u></font>attagggcgagttataaatccaatgactactgtccttatcatgaggaggagatttggaggcccagagacatgcagggg<br>aagaggccttgtgaagatggaggcagggattggagtgatggagctgcaatgcaagccaaggaccaccatgaattgctggcaaacactagaggctaggaag<br>aggagaggaagtgttcttccctggggccttctgagggcatgtagcccagctgacaccattgggtttgaacttctagcctcttaaattgtgagaataaatt<br>tctgctgttttaagccatccagtttatggcaatttgttatggcagccctaggaaactaatataaccacctctatggaaattaatataaccacatatatag<br>gtggtta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	455	133	NA	intergenic
0	chr6	89424167	89424460	1000169	0	-	Ya5ACA1441; RIP_Alu_chr6_089_01	CAAATGCAATTGGAGTGTTCA	ATTGGGCTAAGCACAGGATG	SINE	Alu	Ya5	tgtacattgattttgtatcctgagactttgctgaagttgcctgtcagcttaaggagattttgggctgagacaatggggttttctagatatacagtcatgt<br>catctgcaaacagggacaatttgacttcttcttttcctaattgaataccctttatttccttctcctggctaattgccctggccagaacttcaacactatg<br>ttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtt<br>tgtcatagatagctcttattgttttgagatacgtcatttcacaaatgcaattggagtgttcagtttacatttttaaaagtactttt<font color="green"><u>AAAAAGTACTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAG<br>TACTTTTA</u></font>ctttcagcttgagtcactcttcccaggctttatccaggtggcttaggttagctagggctgtgtcccgtgatgtacagtccctttacacaatg<br>ttggagataaaacttggcctcatgtcttgcttcatattcccacagcctctcagagtcctgtggacaatgactagggagacaaaccatgcaagcaacatat<br>tttttaaaaggtcagtttcaataatgacttaattttaagttataatttcatggaacactttcatcactttctttttcacagtattttacccagttattaa<br>ttaatctaagtagtgtatcttcgggaggtaagacagttatttccattttatagatgaggaaatcaagaaaagtcatttagtttatgacttatcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	849	541	NA	intron:RNGTT:NM:003800:13/16
0	chr6	105221966	105222264	1000170	0	-	Ya5ACA1467; RIP_Alu_chr6_105_01	ATGTGGGGAATGTTTGGGTA	TCCCCCAACTATTTTCATGC	SINE	Alu	Ya5	ttatacatggtgagaatcttgactgctattcttttgatacaatcttggggccagtaaacttaactattctgcgcctttgtgtcctcatttaaaaatgatg<br>atacctgcttgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaaaagatcaagaccatcctggtca<br>acatggtaaaaccccatctctaactgaaaatacaaaaattaactgggcatggtggcatgtgcttgtagtcccagctacttggtaggctgagggaggagaa<br>tctcttgaacccaggaggtggaggttgtagtgagctgaggttgtgccactgcactccagcctggtgacagggcgagactccgtctc<font color="green"><u>AAAAAAAAAAGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAAAAAGAGA</u></font>aaagatgataacctattttttgtaatgtggtaagaactcagttagctgatatgtgaaaatgcttagttggtgcctggcatatagaaa<br>gtataaatattatatgctattattattacatgaaaatgatattattgtatactaggatttttctgagagcatgaaaatagttgggggaatcacagctata<br>tatattttttgaacttaaaatttatcataaacttttaattctatttaaaattttcaagttaaaaactgttactccttttctgaagattttctccctatat<br>gtttccttttttttttttaaaaaagtctccttatctattctttttaagcatctagatttctcagaaagtaattagagaaggaattaaacacagagctag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1011	700	NA	intron:HACE1:NM:020771:17/24
0	chr6	119596450	119596769	1000171	0	-	Ya5ACA1480; RIP_Alu_chr6_119_01	TCTGTAGCAAAGCACATGAC	GGTTCAAGCAATTCTCCTG	SINE	Alu	Ya5	ccaagtacacagtatcagtactggggtaattacgtcatctccatattgtagatacactgaagctctgagaagctaattccttagccatataggacatgac<br>agaaatgggattacactctgctgtctgtagcaaagcacatgaccgtgtccacatattattcccaaaaccagtgttgccagggttggtaccacaacttttc<br>ttccttttctgtttacttgcttatcagttacatacctaaatctcataaaaatgaaatagcagttgccgggcacagtggctcacgcctgtaatcccagcac<br>tttgggaggccaaggcgagcgaatcacctgaggtcaagagtttgagacgagcctggccaacatggtgaaaccccgtctctactaaaaat<font color="green"><u>AAAAAAATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATTAG</u></font>ctgggtatggtggtgcatgcctgcaatcccagctactcaggaggctgaggcaggagaattgcttgaacc<br>cgggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggcaacagggtgagactctgtctcaaaaaaaaaaaatgaactagcagc<br>aaccttctagcccatgaaatcttccacttcttgggcaacaaagaataattaagttatgaaaactaaaccataatcacactcgtaatgcttatgagttaat<br>aatagatttttgcacaagttgtgtttgaaaacatttattcattgcacttaagtctttctcaaaacacaaagctgtccttgaatttttaatatagttcatt<br>aaattgaaaaaattctcatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	677	346	NA	intron:MAN1A1:NM:005907:5/13
0	chr6	65185163	65185466	1000172	0	+	Ya5ACA1549; RIP_Alu_chr6_065_01	CTCTTTCCCAATGTCTCTCCTT	TGTGCCAGGAACTGTGTTAAG	SINE	Alu	Ya5	tggtacttttcacttatgttcctctttttggctacagtaaaggagaggaaacacatcattcaggaaaatggacagccacattttctttgaagctgagctg<br>attctcctgggtctcttggccatgaggcaatggccaacgggaaatataggtgagaaaacataaatttacaaatatctttctgttttattttacattataa<br>ttaagtcagcagaatactatcaagtttgaattaccaaagatatttttgtgttcacaagttcttataactctttcccaatgtctctccttaatttgacaag<br>ttttctcatgtggtatcatacactgtatttctgcctcatattatactccacaaataggttctacttcatagtttgctctgaatagtaaat<font color="green"><u>GAAAAGAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GAAAAGAAAA</u></font>aataccaaatacttaacacagttcctggcacatagaaaacacttcatatcaggtaaatatcatcatgattgtgtcctcggcccaat<br>tcttgctctattaaaaaagtcacttaaacacccaaagccttaacttcctcttttttaaaatggtaaaaggaataaaaaaaaatcatttaatttgtatgat<br>tgttgtattaaaacattactgttgtgatgttttttaagagacaagctctccattgcccaggggctggagtgcaatagcatgttcatagctcactgtaacc<br>tcaaactcctgggctcaagctatcttcccacctcagcctcccaagtagctaaggctacaggtacatgccagcatgctcagttatttttttgaaataactt<br>ttgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	479	165	NA	intron:EYS:NM:001142800:26/43
0	chr6	67235276	67235605	1000173	0	+	pAlu6-67185333;Ya5ACA1555; RIP_Alu_chr6_067_01	CGGTTGGTTTCAATGTCCTT	TTTGTTGATCCAGTTTTATATGGC	SINE	Alu	Ya5	cacataatcaaaacctcctgcactttagccagttataccgtggatttggatgagacaccaggaaacaacacttgtattcttcgcagtgcccttcatgtat<br>tgatggtactattacatccaggacatttaagtcaatatattcatagtatagtagacctgaaaaatactagagtgattttccatgtaactttctgattttg<br>ttcattaaaaaaaaagagttctctagagatcatttgacttaaggtaatagctggttggtcattcagctgagaacagaatacggatcctggatctctgtaa<br>aagccactattctacaaatagtagttacggttggtttcaatgtcctttaaaaatagcatgataatttttttacctaattctataaat<font color="green"><u>AAATCAAATTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATCAAATTGAA</u></font>aataaagccatataaaactggatcaacaaatatctatttaaatttactctacttaaa<br>gtaacactagtctgagaatattgttttcttttatttataaataatgcatgactgataattataaataattatctggtgattcagtaagatcatccaaaga<br>ccagtatgaacaaaataatgtaaaactaaaattgcattttctataatttaaagggaaaatctctgacttctgagtttgtattttggtaagctaaatgtgt<br>ctgtttgcttccattcactattgcattgaaatatgcaataacgaagaaaaaaagtatacatttggaacaacaattaaatgcgtttccttaccttgcacga<br>agtaactctaaatatgattaattaaagcca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	446	103	NA	intergenic
0	chr6	74263883	74264203	1000174	0	-	Ya5ACA1561; RIP_Alu_chr6_074_01	TGGATGAACTGTTGAAAAATATCAC	TGAAAAGAGAGTGGGGCAGT	SINE	Alu	Ya5	agtctcagctacttgggaggctgaggtgggaggatcgcttgagccctggaggcagaggttgcagtgagccaagattgagccactgcactccagcctgggt<br>gaaacagccagaccctgtctcaaaacaaacaaatgacaacaacaacaacaaacccatagtgtaacttgaaataatgtaaaaaaaagttattaaaaaacat<br>aatttatggccgggcatggtgactcatgcctgtagtcctagcactttgggaggctgaggcaggaggatcacttgagctcagagcttcaaaaccaccctgg<br>gcaacatagtgagattttgtctctattcggttaaattttttttttaaaaagacacactttttaagaaaatatggatgaactgtt<font color="green"><u>GAAAAATATCACTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAATATCACTTTT</u></font>tttttttttttttgagacagagttttactctggcacccaggctggagtgcagtggcatgatca<br>cagatcattgtagcctgaaactcctggtctcaagcagtcctctcacctcagcctcctgaatagctgggcacacaccaccatgcccagctaattttttaga<br>aaatattttgtagagacaggggattgctatgttgctcaggctggtctcaaactcctggcctcaatcaatcttcctgcctcggcctcccaaactacaggga<br>ttataggcatgagccacctcacccactgccccactctcttttcatactaaatgcatataaagctgggtgcagtggctcaagcctgtaatcccagcactat<br>gggaggctgaggcgggtggat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	673	336	NA	intergenic
0	chr6	95573693	95574002	1000175	0	+	Ya5ACA1583; RIP_Alu_chr6_095_01	TTGAAAAGATAAGCTGCACA	TTTGCATTTCCCTAATGACT	SINE	Alu	Ya5	aatctcaaaccacacctcatactttattcacaaatacctcaaaatgggttatacacttgaatctaaagtgtaaattgataaaaatagtaaaagaaaacat<br>agaaaaaaatctttgtaaccctggattaaacaattttttctttaaatgcaatactaaaagcacaatctataagatgacaaataggctttaattaaaatta<br>aaaacttctgtaaaagttcctctgatcagttgaaaagataagctgcacacagggagaaaatgtgtgcaaattatatatcccacaaaaaaacttgtatgca<br>ggctacataaggaactctctaaactcaacagtaagaaagcaacctaatttaaaaacggacaaaagatttaaacagatacttcagc<font color="green"><u>AAAGAAGATATACAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAAGATATACAG</u></font>atagtaaataagtagctgaaaagatactccaactcatcagtcattagggaaatgcaaattaaagtcacaatgagg<br>taccactacttccatattaaaatagcttaaacctaacaaactgacaataccaaatattgctgtattaccagttaagtctcagatacacttttttcttcat<br>tatctaatctgaaatcagtctcaattttcacatccataaaatgtggctgctaattaatgcttgtcctcacttgcttattgtgctgttgtgaaaaacaaaa<br>gcaattatgtagaaaacattttgtaaaatacaaagtaatttactaacataatgaaaaattattattgtggaatttcagtgaagatttgagaaaaggttca<br>aaatgcaaat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	556	229	NA	intergenic
0	chr7	93958344	93958644	1000176	0	+	Ya5NBC212; RIP_Alu_chr7_093_01	CATTTGGCGCAAGTGGTATT	ATCCCAAAGAAACCCACGA	SINE	Alu	Ya5	gataaagggagagctggcacatcagatggcaaaatcaggagcaaggtggggggtaggtgccgcatacttttaaaccaccagatctctcgagaactcactc<br>actatcacaagaatggcaccaagcagatggtgctaaaccattcatgagaaatccaccctcatgatccaaccacctcccaccaggcccctcctacaatact<br>ggagattacaattctacatgagatctgggcagggacaaatatacaaactttatcgattactatacataaagtagataagtcaagtgtgcaagtctggagt<br>acagaagaaagtctaggccagacatgcaaatttgggaattgtccatatacatttggcgcaagtggtatttgaatcccttttcttaggct<font color="green"><u>AAAGAAATACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGAAATACA</u></font>aaagcaacatgcaatacatgaattatatttaactgtacttcaatgtccacttaagaaaatagttaacaaaaatatcatgaaataataa<br>atcaaaccttattaaattttaggttcactttgtcgtgggtttctttgggattgtaaatgttagtaaatatttttttttctggatgaaaataacaatcagt<br>ctacaagatatcatagagttccctccttattctttaaacaatttctttgtgaatatacattagattggcttttactattatagtcattgtatcaaagatg<br>accccattctgaattcttacatgaaatgatgttttaatttgacaactaattacagttttcttcacatctcatgatctcagaaaatcaagagacccagtct<br>g	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	502	190	NA	intergenic
0	chr7	141196226	141196489	1000177	0	+	Ya5ACA1667; RIP_Alu_chr7_140_01	TGTCAGTGGCCTGTGAGAAC	TCCTCTGTCATGTCTTCTTTTCC	SINE	Alu	Ya5	cttggggattcggccattctctgcagtgcccagcacttccttggacctgtgggccccagagctctctcaaaaagagctcctaagctctggggccagatgg<br>agcaagctaagcacatgctcctatgaagacctggcccccagtgtcagtcactggagatgtggcctcttgaaattttccccttatagttgggacacagtgt<br>cttttcatttttcccagggatttctcctggggcaagatggaggaggccagctcttgaacttttccccttgctgtcagtggcctgtgagaacctggtatgt<br>gatccatataaggatctttctccttggcatgtctttctttcagctttctttcctttgctttcttcaggagagattaaaagaagctt<font color="green"><u>AAAACCTCTGTAGA<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC<br>CAGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCC<br>CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACCTCTGTAGA</u></font>agggaaaagaagacatgacaga<br>ggaatcattttaaaatcactatgtttctccaaaatatggaattactgcaaaaaaaatggtctaaaatcaaaagaatcctagtttttcacttctggaagtc<br>aatgttgagtctctgtgtttgacctatatatttccccattgtattcaatgtactgatacataaagaaagcatctcagtatgggggtaaggtggtagtggt<br>tcagactcccacagagatttggtgaagacagggagaagatctttcacatacaggctgaaaacaagttcaaaaatcaggtagaggctacgagattgctgtg<br>gtcagtgtggggctgcaggcttgagcctgaggctgctcaaccagttttgctcttgaagtccctg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	432	154	NA	intergenic
0	chr7	39870047	39870344	1000178	0	-	Ya5ACA1696; RIP_Alu_chr7_039_01	TGCAGGTCCATACCTGAGTG	CATAGGTTGGGAGAGGTGGA	SINE	Alu	Ya5	ttttacaaattcaattattcatatttctttaaaatgcttttttgtaaccaactttccattacaaacataaaacaatgacaggttgaccactgctaaattt<br>taagagtaaattatatagaaaactagattcataatgagaaaattaatttcacatgtgagcactttaccttgatatcacaatcacggtcttccttagctga<br>tgtaggctgtaaatcattgatcgcctgtttgccggaaagcctttagagcaaaaatatacaacaaaaatgagtgtgttcatttctttaagaaagtaatttg<br>caggtccatacctgagtgtcacctccaaaaaaacagaaatagaaacaaatctggtgagagactagctatctgtatattaatgttgctt<font color="green"><u>AAGAAAATTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAA</font><font color="green"><u>AA<br>GAAAATTAAA</u></font>atttggcctctgttgtagattttagttacttatttctatttccacctctcccaacctatgaaatagtcaagacccacgcatagttccgta<br>acaaatcatggcagccaatacactggcatagtctgagaataatttgtcttcacaaattgtatgtcctacaggctgagctgaaaatccaattaattgctga<br>cataatttttaatacctgaactggaacaaacctgataatctaaaacaaggtagaaaaatatagagtctcctcttcttcatttatttctggttcaaagact<br>aatctctgtcactcaaaaatggcagcctgggttcttcagcacggaaatcacttaagaaggcctcagtgcgggccaggtgcggtggctcacgcctgtaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	472	162	NA	intergenic
0	chr7	42647661	42647662	1000179	0	-	Ya5ACA1702;pAlu7-42354424;1104685592768; RIP_Alu_chr7_042_01	TCCCCCATCTCTTTTTCCTT;NA	TGGATAAAGCTGCAACACCA;NA	SINE	Alu	Ya5	tactttatctgtctcatgacttttaaaacgtgagctgttgattttcctacgtaacttgtgtgtgtgtggaaatctccttagatttacacaaaggtgaata<br>cttctaaagacaattatgactttcctctgccagttgacaactcgtctaggattatttaaactaaattccattctcagttttttgggccatccaaatacta<br>tggaattgaggcagcaaacaaacacgagatctaacctataaatacagtttctcagagtctattttcccctttcactcagtgccaggatttgaaaacttgc<br>aattctcccccatctctttttcctttttcccattttcttgtaggaggatggggagagtttatttctagttcatacttatgctt<font color="green"><u>AAGATAAAGACTTTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAAAGACTTTTGG</u></font>tgttgcagctttatccagggaggtctcctgttagacactgtcacttaaagggagctgt<br>gctttattttctgacctctacaccttacaggctcataacagcttaaattgttaagttctgaaaatattctcaaggtaaaaatactgaacgaaattctatg<br>tttgcctctctatgttctcatcttcccttagattttggcctgagcaaacattactttcttgctagctcaccaaatcaatcattcagcaaatatttgtgaa<br>gcccctacaatcttccaactactattctatgtgttgggaacacagcagtgtaaaaaacagacaataatccctactctcaaggaatttatctcagaacggt<br>tgagtggtggttttcataatatttt	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	454;NA	112;NA	NA;NA	intergenic
0	chr8	64144875	64145115	1000180	0	-	Ya5ACA1770; RIP_Alu_chr8_064_01	CCCCAAGTAGCCTGTCAAAA	CAGGCAGCATCACTACCTGA	SINE	Alu	Ya5	gtattgaaactctaaaagtaatcacgaatctgtctatttatttttccagttgtgacaattattgctttgtttaatttcaggtctctgtcaatgttttcat<br>aaattgacattttcatcattaagaaatttctttctttctttctgttattattccctgtcctgagtctaatttgactggttttttacagccactccagcta<br>tccctacacttcatgttttcatgctacatttttccattctttttttaacctatctgtgtctttacataatagaaactaaccctagaataaatactactct<br>aatctgccctaatatatcttaatagcaagcctcaaaaaaaatcaagctaatccccaagtagcctgtcaaaataaaattcaaatatttttt<font color="green"><u>AAAGGAAGAC<br></u></font><font color="red">GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAG</font><font color="green"><u>AAAGGAAGAC</u></font>aacaaccaggaagtcaagcacttaaatgccaactaaaaattaccagac<br>atgctaagcatcaagaaatgtgatctctaattaggagaaaagtcagtcaacaaaaatagacccaggaaatgatggtaataataaaattaatgtataagga<br>caaattcaggtagtgatgctgcctgtataggctgtgctagcctgatcagccacattgttttatttagtcttatctcagtatggactcttcccaaaagtat<br>tcacatggattatataaatgccccatctggctgtagcaacgcctttccagagcccacagcctcacagagatgtgtctttaacacaccagtcagtcatccc<br>ccaggtattcaaccaaatagttatgctgttagtcacagccca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	473	222	NA	intergenic
0	chr8	87896098	87896413	1000181	0	+	Ya5ACA1793; RIP_Alu_chr8_087_01	TTTTTCCAAAAATGCTGGGT	GTTCATTGACTGGGTGGGTT	SINE	Alu	Ya5	agctgagaagagaagacaagggtaatgagaatggattcttggccaacgtcaatgcttaacggaagaagatagcattcaatggagcagtctaataatggga<br>aagcaagaaaggagagaatggtgtcacaaaaacccagtaagaagaaacttcagtatcaaacatcacacagggcgtagtaagatgaagactgaaaggaggt<br>tatttgactagaatctaaaaggtctctgatgatcttaatgaaaaaaatttcaaaaaatatgaagaagattaattatagtagatggaagagtaaatttggg<br>ttggggaaatagaaaagataaacgtagattattttttccaaaaatgctgggtataaagagaagttattttgataatttgttgtaaaaca<font color="green"><u>TTGCCCCTTTC<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAACAAAACAAAACAAA<br>ACAAAACAAAAAAACC</font><font color="green"><u>TTGCCCCTTTC</u></font>cgtttcatgtgtccccaccactcccccactgcccccattttctcttctcaggtaatacagttctattttaaca<br>tcttaacccacccagtcaatgaacagggacaatctaggcccacttgggaattgtctctgtcagtgtgccagcatttattaatagaaaactttgactgggc<br>attattcttttgcctctgaaggtttatttagtcaccctttttgggtgccttatgtctatctaatattatattatttaaagaaaaattacctttgagattt<br>tagaaaacaaaaactagttgaaaaatgggtagatacactatgaaccattaacataggtatgtttagtgacctcactagataggtttagacttattttaaa<br>acatactcctccctgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	492	165	NA	intron:CNBD1:NM:173538:1/11
0	chr8	99356836	99357145	1000182	0	+	Ya5ACA1805; RIP_Alu_chr8_099_01	AAAAGGCAATACATGGCTGG	TGATGGGATTAGCACCACAA	SINE	Alu	Ya5	gcaaactatcatctgacaagtccttaggaaggtactgttttcatctgaagataaattttacctaaattctaccatgtttttcaatgctgcagtcctcctc<br>acctggaatccttccatccttggctccctgtatctgcaatgcaaaagaaatacaaacatttacctatagcaaaactctgagaatctccacaaagtcaggc<br>tgccaggaaagcctaagagcctgggaaggagaaggaggggacaatacattctgcatggtttaggcatccttgctgcccagtgccttttaatccccttggc<br>aaatggcctgggtttattttttagagtgggttgggcaaactcagatggaaaaggcaatacatggctggagcacaggagccatgagt<font color="green"><u>AGAAAATATGGGAC<br></u></font><font color="red">CCTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAAATATGGGAC</u></font>tctccaaattctcaccttgtggtgctaatcccatcacctatagtaatgttgcaaggcaggtgaaagcttgaattct<br>atctccaaggttataaaggaggtataaaataaaacatctatcaaatattttgagacccttagaagcacagaatgttatagctgaaaatcctaggtgtctc<br>tgagaatgtggaaataggccattttagcttaaaacaaaacaaaagattgcaatctactgagcctgaagtggtttgagatctatgtatgcttaatctagca<br>atgtatgtcccaaatactgcaggtcctcttgactttaatcatggaaagatgatcccatattcattgagaagaaataaataaagcagcctctttaacctgc<br>ctttcccaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	412	88	NA	intergenic
0	chr8	97588648	97588946	1000183	0	-	Ya5ACA1806; RIP_Alu_chr8_097_01	TCAATGGTACAACCAAACAACA	CCCTACTGCCTTCCAACTTTT	SINE	Alu	Ya5	gttccatcaagcaagaaagcaagatgccagcaacagatatggaaagttcagtcttctctaggaaaatagctcatttgtgtacaagtattaaataatgagt<br>tgcaccaccgttccatccacctagccagcacaatcactgggatttctctgatgtattaataaactgcagaggattaaaagtctactacatctcaatacat<br>tcttgggacaactgagaaatgtaaatatgggttgaatattagaaatgtattcaccattaactttcttaggtgagattgtgttttctcctttttcccaggg<br>gataaatgctgaatcctcaggggtcaagtatcctgatcactgaaatttactgtcaatggtacaaccaaacaacaaaaaaaagctgtatat<font color="green"><u>AAAGAGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAGAGAATA</u></font>ataaagcaaatctggtaaaaaaaaacaaaacaaaacaaaaacaaactaccaattattgaacttatgtggagaatattgtcctatgctttca<br>agttctctgtgtatctgcaaattcataatttaaaagttggaaggcagtagggtaactccagctgaaaaaacttcaggtgacaccagagctggtattaatc<br>actaatgggaccagaaagtaccgccttcataccaggtacaagaatgaggtgaaatctgctaaaaattatactagcctgtagttagctgacttaaataaat<br>tgggcccacaaaagactgcatgatgtatttgtgtgtggggatcggggagggtggtaaccacataatattctaggagaaaagacagctatgaacttgaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	500	191	NA	intron:SDC2:NM:002998:1/5
0	chr1	70768128	70768434	1000184	0	+	Ya5ACA589; RIP_Alu_chr1_070_01	CATTGCTTGAGCATGTGTCC	TGAAGCTTGGAGCCCAAATA	SINE	Alu	Ya5	tcacagacaaggcaaagtgagttggtattcttggtttccctagacaggaaaaacagaaataaaacatgcctcacatgctgcatgaaaataataactaggg<br>ttacatagaatttatcatcaaaattaataaatctaagaatgaaagtgacactactgacaattctgccaggaaaacaggggtgagccagagcaaagaggga<br>agtatggttgccttatgtatcaagaagccctaaaaaagtaactcatcaactcacacaggggcggcgggggggcggggggctgcctgttgctttatagctg<br>aattctagcttttagtccactcccagaagctagaattcagctttactattaaataacacctatcattgcttgagcatgtgtcct<font color="green"><u>AAAAGAAAATAGTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAGAAAATAGTATT</u></font>aaaagggactcttcccctatctctataagatgtgggctcctgataataccaaaaaggaacagatcattttatatgta<br>agtgcactatttgggctccaagcttcagctatcagggaatgttatgctctacataaaagaagaaatgggctaaaacagtcttctgcctccattccctgct<br>tgcccatcataggtgaaagtggtagtgggttgccaggagtggagatgaaaaggtgagtaaagagatgcacagaaagacagataaagaaagacaaagacag<br>actgacatggtgacctttgagattttagatctagcgatatgtaaaattagttatagaaacttcccagttatataaattaatacagcctatttttatttca<br>ttcgtgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	141	NA	intron:ANKRD13C:NM:030816:6/13
0	chr1	225344414	225344716	1000185	0	-	Ya5ACA637; RIP_Alu_chr1_221_01	AAATGCCCCCTACAAAGACA	TGTGTGTCCCTGCATCTCTC	SINE	Alu	Ya5	aactaaaatttaagcgtaagatagctaatgtaaccttgttgtacccattatgattgtcttcatcataccacttttttggaattagttgagacccactttg<br>tggcccaatattgtgttaaggactataaatcttttaagtgtatacttggagagatgttaattctctagatgttgccaagaaaatctttcctaccacaagg<br>gtcctaggacttcagctgttggataattagtttgttttctaaacaaaaagatttggaaaattattttaaaggaaagagggagaaaactgcctttttccct<br>taaaagaaaaaaaatgccccctacaaagacatattcactttttaatccccagaatctgaatattatttaatatggcaaaagaggtgatt<font color="green"><u>AAGAATTTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATTTTAA</u></font>gaggagtttatcctagagtatccagatgtaaataaaatcacatgtatcctaataagagacagagagatgcagggacacacagagga<br>gtaggtgatgtgacagtgtgtctacctttgagtcattgtgtccaagtgactgccatacactgattgactagagctgaggttatgttactttagtgactat<br>ttgaaaatgttacatttcctgtaatttgacggaacaataacagattagagtgctgtggtcgtaagccaggaaatgcaggcaaccaccagaagctggagga<br>ggcaagaaatggaatctgcccaagagtctctggagagtaagcaaccctgcccacaacctggatgtcagacttctggccgcaggtcctgtgaggaaataca<br>ttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	170	NA	intron:DNAH14:NM:001373:33/84
0	chr1	78543591	78543895	1000186	0	+	Ya5ACA645; RIP_Alu_chr1_078_01	TGAGCAGGAACTTTGCATTC	CAGATCAGTTCTTCACGGGAG	SINE	Alu	Ya5	taaggatttcattgtacaatgaaaaacatcattaagattatatctactgaatcagtcattttccttacgttgtgtgataccttgttacgagtttactttc<br>caaatcttttttgatttagtttagtttgtccgtcagagagtgttatattttaaaaaaaagttaaatgctgcctttcactgcctgttgtgtagcgtactta<br>gattctggaagcaaatatttcttagaggagcattgataatatggccacttcactgttagttttattgttttcatatgagtatgagtgagggtatgaaagc<br>tcacagtagcttcttaaggttccttctgacttaaatgttcattatcttttgatgagtgaatgagcaggaactttgcattctttagaaa<font color="green"><u>CTAGTGTATCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAC</font><font color="green"><u>CTAGTGTATCAC</u></font>tttcttattttgcagttcaaaatataaaatctttgaggatgcttgaatttctagacctttatcatatacttagaggtatattt<br>gctgatagttgtgcattgatactgtgatagcttcttattctcccgtgaagaactgatctgaagtcatggagctttagttacctgctgctcttattccacc<br>ttgcagtggctatcacattcctacaggttttcaacacagcttcccatgaagttccattcactgaaagatatagctggctccattccttacagaaaaaaga<br>aactaatgccctgcttgccaacttttggctgtctagaatggaatgttattctgcacgggaggaagcacgatggaaaagggttcttctacctgcaggaaat<br>ctaat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	183	NA	intron:GIPC2:NM:017655:1/6
0	chr1	158712047	158712353	1000187	0	+	pAlu1-155489820;Ya5ACA720; RIP_Alu_chr1_155_01	CCCAGAGGCATTGAACATCT	TCTCTGTCACATTCCCACCA	SINE	Alu	Ya5	agcttaacttacttttcaagcaaaagtaataacatttataaatcatacttatagtcttagaaaaacaagacctataaattaaaatgatagacacaaaact<br>tagtactgttgttattcatattaaaaatcattaaagagatacttcactttgaaaatacatgccaaaatgtctttaaataatttcgttaaaaaaagaaaaa<br>gtgcgtggtaattttaaaaaactgatttgttagcattttaaacttaaggagatgatgagatttctttgaagaggtgtgtgtgaactccattagctcccag<br>aggcattgaacatcttttgagaacagaggattttcttggtggcgtttttcatatctttgttcctcagactatagattactgggtt<font color="green"><u>GAAAAGTAGGGCAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAG</font><font color="green"><u>GAAAAGTAGGGCAAG</u></font>gacagcaaacatcagtgcaatggccttgtccagtaatggtgggaatgtgacagagaagcgcagatacatgagtgacac<br>actgccaaaaaacagcaagaaaatagcaatgtgggctgcacatgtggagaaagccttctgacggctctcaccagagggaatcctcaggatcaccgtgatg<br>attcttaaatagaaaagggtgatgacagagacagaggtcagaatggaaatagcacggatcacatcttcaaccagaattatttacgtatctgtgcaggcca<br>actgcagcacaggttcaaagtcacaaaagagttgatgaatttggttggcgccacagaatggaagagtggaaatgcacacaatctctggcagtaacatgag<br>gaagcca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	483	161	NA	intergenic
0	chr1	169160037	169160349	1000188	0	-	Ya5ACA733;pAlu1-165855970; RIP_Alu_chr1_165_01	CCTTGATTGCCAACACTGAA	GAAATTGGAGATTTGGGGGT	SINE	Alu	Ya5	cttatttgggacacctagctttgcggagcagatggttttcccagtaaactcttagattctataggtatcacatttcagggtcaagaattacgcatatcct<br>cagtataaactctgtaaagactttttttctcttgtttgatggaactcaaaaatggagcaataatagttatcaacaagcaatgagtctgagtcctcaggct<br>ttaatggcaaccaacaaacccatgctccttattgcagaggaagagtgcattgttgattcgctttatatccccaaatagaaaacacgttaagggtaatcct<br>gggaaattatgcttacttcaaaccttgattgccaacactgaagtgtctaaatagcacttcaccatttttctggttgttttctta<font color="green"><u>GAAACAGTTCACTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>GAAACAGTTCACTTGC</u></font>ttccttcctgtgataaatgccatatttattttagtatgagtcaacctacactttttttatattgcctctct<br>ccccagacccccaaatctccaatttctcacaagtgaatttaggcaaactaaagaagacatctctgttccgtgagtattaaaatcaaacatttttaaatgt<br>aagttataaaaataacactttcattgttttcttcctaattactaaagtagtccatgtttattacccctattccacctccaaaaaaaaaagaagaaaaatt<br>atggaaaagagtcaagacctaatagactaaaaattttaaaactattcttgtttgcctacttctcagaaataaacactgtaaaataaacattttgacctga<br>cctcaaaccattg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	175	NA	intron:NME7:NM:197972:10/12
0	chr1	185766817	185767126	1000189	0	+	Ya5ACA745; RIP_Alu_chr1_182_01	AAGGTTTTGTTCCTGTCATAATGTT	TGGTCCTAGAAGAAATGCACAA	SINE	Alu	Ya5	taaaagttgtctctttgttttttggttggttgtttttgagactgggtcttgctctgttgcccaggatatagtacagaggcacaaatctcagatcaatgta<br>acctcaaacctctaggcttaagcagtctttctgcctcagctttctgattagctgggacaggtgtgtgctaccatatctggctaattaaaaacaatttatt<br>tttgtagagatgcagtctcactatattgcccaggctggtcttgaactcctggcctcaagcagttctcctaccttggccttccaaagtgctgagattcaaa<br>gctaatattgatatgtaaggttttgttcctgtcataatgttaattgttacctagttgttttatagtctcatttatgcaattgctttat<font color="green"><u>AAGACTTGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGACTTGTTTT</u></font>atacttttatgttctttttataatggtgggtattgacctttaatttcaatgtttagatttcttttgtgcatttcttct<br>aggaccagtctggtggtgatgagtttctttagcatttactcgtctgggaaagactttacttctccttcatttgtgaagcctagtttagcagaatgcaaca<br>ttcatggtggacagtttttttctttaagaattatggaaataagaccctaatctcttctacctcataaagtgtctgcttagaagtccagtgttagtctgat<br>agagtttcctttataggcaattagatgcttttctcttgctgactttaggctgatgattgtatgtcttgcttaagtacttctttcaatatattttcctgaa<br>gttctttgag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	169	NA	intron:HMCN1:NM:031935:1/107
0	chr1	115796900	115797172	1000190	0	+	Ya5ACA974;pAlu1-114896896; RIP_Alu_chr1_115_01	GCCCAGTCTAAGACGTTTTGTT	TGCAGGCACCTCTTTCTTTT	SINE	Alu	Ya5	tacatggactttcaaatacactgattgctatgacctaaatgttgttgttccctcaaaattcatatgttggaacttaatttctaatgtgatagtattaata<br>ggtaaggcttttaggtggtgattaagtgataaaggcagagccccatgaataggattaataccattatgaaagtgagggacactgtttgccctttctgcca<br>tgtaaggacacatagaagtcaccatctatgaggaacaggtccttcccagacaccagatctgctggcaccttgatcttgaacttcctccagaactgtgaac<br>aataaattctgttgtttataagttgcccagtctaagacgttttgttatagcagcaggaacagactaagacattatcatattctatgttt<font color="green"><u>AAAAGAAAGAG<br></u></font><font color="red">GTGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGG<br>CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC<br>ACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGAG</u></font>gtgcctgcatgtgtac<br>ttatttaataaatacttttatatagtagacataaattacacatactatatattaatatatggtacaatgtattttatttgaagaatgaaagaacattcct<br>ctgaaaatgatatactgaaaggttcagaataaaactagcaaattattggggattttcagtgaaatgcaagaagacgtagtttgtataaaaaagtagcaga<br>aaattctaaggagacaacaggctgggatgaaaaatcagcaggctgagaaacgaaataaagagcatagaatcaatttggaggggctgagataattttttta<br>attatggaaaattaatatacaatagtggaatttaaatccatattggaaacaataagaagatgattttatagtt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	368	85	NA	intergenic
0	chr1	77100376	77100649	1000191	0	-	Ya5ACA975; RIP_Alu_chr1_076_01	CCAGAGGCAGACCAACATTT	TAAAGCCAGAGGGAAAAGGC	SINE	Alu	Ya5	caaagatgactctcattttgagatcatttccaaatatggatctcttatagagttggatagataactataagctgatttgttaaaagaaaaattatccaaa<br>tttgacattcaactgcaagagtgttgagatttgcagaaagaaaataagaggagagaggaaagtaaggaataaggaaggaagggaggaaagaaggaagact<br>tctttgttctatgcagcttatgtgctaacccaactttgttaatatgtctgacacagcaaaaaaagaaatatatgtcagcatcagatagttaatatggaca<br>aaacaaattccagaggcagaccaacattttctcttgttattgtttatagtagtattctggatatgtttccgacttggatatcaagtatatt<font color="green"><u>AAAAATCCC<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCCC</u></font>ataccgccttttccctc<br>tggctttattaacatatccttacttgtcctgttgtaaaacaaactgaaatatgccaatagctctttgccattttgtaagctttattctaagacacaatgc<br>ttataaataaagcactataatgccataaaaactctcaacaaacgtacaactgtgcatttacactttcttctaaaaatagatgaagattatgggttttaaa<br>atgaatgagaaactacagaaaaaaaatcatgggaactcaggaaaataagtgaagcaaaaaatgtaccatatgtaacagaaatgggtatttactcagtaac<br>agtgacaacaaagctaaacacaaggaaattagtactttgtagattaggtaacaaaaagctataaaattgcctcg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	399	116	NA	intergenic
0	chr2	36955674	36955976	1000192	0	+	Ya5NBC5; RIP_Alu_chr2_036_01	TAGGATATTACTGTACAAAGCCGTAGATTT	GTTTTAAGCTAAGCGTTATTACAAAAGAGT	SINE	Alu	Ya5	atgttggccacactcgtctcaaactcctgacctcaggcgatccacccacccctgcctcccaaagtgctgggattacaggcgtgagccaccacgtccagcc<br>tgtattttctatcctatatttttatcattattttagagtatactccttcacttacttaaaaaaaagttataacatttaaccaaaagattttaaaagtaaa<br>aaattttaaaatctcaaaaatagaaaaaagcttatggaataaggatataaggaaagacaatatttttgtacagctgtaaaatgtgtatgttttaagctaa<br>gcgttattacaaaagagtcaaacagttaaaaaattaaaaagtttataaggtgaaaaagatacagtaagctaagattaatattatatt<font color="green"><u>AAAGAAAAAATAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAG<br>AAA</font><font color="green"><u>AAAGAAAAAATAT</u></font>tttttataaatttagtgtagatgacgtatacagtggttataaaatctacggctttgtacagtaatatcctaggccttcacactc<br>actcacccctcactcactgactcacccagagcaacttccagtcccgcaagctccattcatgctaagtgtcctctaaaggtgtaccactttttatctttta<br>tactgtatttttactataccttttttatgtttagatatatttcgatacataaatatttatcagttgttaacaattgtttacagtattcagtacagtaaca<br>tgctgtacaggtttttgacctaagaggcaatagaccatatcatacagcctaggtttgtagtagaccatctaggtttgtgtaagtacactctacaatatcg<br>gca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	476	163	NA	intron:VIT:NM:053276:2/16
0	chr2	96359724	96360034	1000193	0	-	Ya5NBC324; RIP_Alu_chr2_095_01	TGTCTCAAGGGTCATCCTCA	TCCCCATCCCTAACTCTTTCTT	SINE	Alu	Ya5	gagtaaatgggttacctttccctggagccttctcaagccactatggcaggagatttccactcaaacccttcatattagaaggttcctgagacacccacat<br>ttcagttctgtggaaagtaccagggtcaaactactggaagacctaggaccccggtcacacaccccacctaccttacacttcctgcactgtcctgggccat<br>ctctccctcctgaggatctccacagatggctcaattccatagggtcttgttgatcttacatcaaccagtgtagaaacttctgtctctctctctccccatc<br>cctaactctttctttcacattttctcattcatactcaccttcctttaaaataattccatgggtcttttttcaaagttaaagagactttt<font color="green"><u>AAGAATCTTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAATCTTAG</u></font>tttgagtctgtgacaaaataggggaaatatcatccctgaggatgacccttgagacagttataaatgactataataaaa<br>taaaaaatttggaataagaagggattcccaactgctactctcctagctaggagtcgaaacaggcccttcacaaagggagcgacagggaggacggcagtga<br>ggggcagtgaggaaagtggggagttgaataagccttgccagattgggaaatgagacccacagggaaacacgactccaatccctcctcagccataaagcct<br>tgttcccacaacctccccagcagcacttcccacacacatgtgtaaacaacagaaagggctccagggagccaggctctgagcaggagtgggagagagagat<br>cagtctgaact	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	486	164	NA	intergenic
0	chr2	213574687	213574977	1000194	0	+	238248;Ya5ACA796;pAlu2-213538608; RIP_Alu_chr2_213_01	TGTCAGTGGAGGTGTTGGAG	CCTTTCCCATTTGCATCAGT	SINE	Alu	Ya5	cttccataacatcctggcaatagtggcaggcagggagatgttcatattactgagcacggttttgacttgatattagaatatatatttatttgctcagctt<br>ttttttttctcatccctaataaagtttaaattaaattgaagattgttgagtttgaaaatacaggaaggagagactgtcatggattacccattgatagagg<br>aatgtccctgaaaggtgacagcaccagaagagttctttctcatgaataaaagaaaaggaaacatggtagttgagatgtaaatatgtctgtcagtggaggt<br>gttggagaaagggacgagaatcttataaaggaatcccagctgataacctctctcttcagtgaagtaggaaataagaatgtgtgtc<font color="green"><u>AAAATAGCAAGGCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAATAGCA<br>AGGCCC</u></font>agggcctcaaaagaatgaggaaggtcaataaggtctactgatgcaaatgggaaaggaagccgatttgagacattcaaacaggatttagagtgcc<br>accagatcaagtcttcatttagttaaccatttgataaatatattgagtccaacacagtatcaggcactatatttatttccagcatcacaaagacaaccag<br>gcatcaacttgttaaacatccccaggatttgaagtggaggagctgactgtgcaggatccacagtatccaaacatcccagctacctcactttctttcttct<br>agctctggtcagaaataaggctatggcaagtgacctttccttgctcagggcggcttcctatattttatgaaagttccatgccagggatttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	184	NA	intergenic
0	chr2	115672427	115672728	1000195	0	+	Ya5ACA815; RIP_Alu_chr2_115_01	TGACACCCATAGGCTCCAA	GCAACCTCTGCTCTTTTTGTTT	SINE	Alu	Ya5	gccaaactaagcttcataagcaaaggagaaataaaattctttttgaataagcacatgcttacggaatttattaccaccacctgcccttacaagaagccct<br>taagggagtgctatacatggaaatgaaagaccattacttgtcaccacaaaaagaagtatacagcccactagactataaagctactgtacaataaagtcta<br>cacaacaaccagctagcaacagaaagacaggatcaaatcctcacatatcaacattaaccttaaacccaaatgggctaactgctccacttaaagggcaaag<br>agtggcaaacaggataataaaacaagacccaactgtatgctatcttcaagagacccatctcccatgcaatgacacccataggctccaaat<font color="green"><u>AAAGAAATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTGCACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAATAAAAAAT<br>AA</font><font color="green"><u>AAAGAAATGG</u></font>agaaatatctatcaagaaaatggaaaacaaaaagagcagaggttgctattcttatttcagacaaaacagactttaagccaaaaatgat<br>caaaaaagacaaagaagagcattacataatgataaagggtttaatttgacaagaagttttaactattctaaatatttgggtacccagctctggagtactc<br>agatttataaaacaagttcttgaagacttagttaactacactgtaacagtaggagacttcaacactccactgacagtgttagatatcatcaggcataaaa<br>tgaataaagacatttaagacctcaatgcaacacttcacaacatggaactaacagacatctacagaacaatccatccaacagtaacataatatacattctc<br>at	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	389	78	NA	intergenic
0	chr2	240958955	240959261	1000196	0	+	Ya5ACA825;238271; RIP_Alu_chr2_240_01	GAAGACAGGGTTGAAGAATGC	AGGAGCTGATGTCGTAGCGT	SINE	Alu	Ya5	gaggcctcccctaatcttcctacccagcctctccccacagcctccttcctcagagcagccaccactcacttggggcaagacattcctgtttccacatcga<br>gtcttcatccctctactaaaacacaggcttccctccctgtggcgcccttagctcccagaatgggtctggcacacagcagacatgcactaaatatttaatg<br>aatacgttaacccagttccaatttgccccaagaatactgagatgggagcaagctgcactttttttttctaaatgggaaataggttactatagcaccaaaa<br>aaagcaaggctttatttaacaagtaaaatgtttctttttcattttaagaaatgagtagtcagaagacagggttgaagaatgcttt<font color="green"><u>AAAAAGAACGTGGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGAACGTGGAG</u></font>taagcctggatgtcagtgtgaagtccacgctacgacatcagctcctggattggctcctggtaaagaacctcaaaccag<br>aaacagcagaccacattgttttcttaggagtaacactaaccaagatcagggtttacgttcatataagaaaaaaagaagcactaataaaatgttttcaact<br>ttttcaaagcaagacaataactccaccaccgtacaactgtgtagatacgtgtcatggacacacactgcatccgtggagacctgaaggagcataggcagcg<br>gctcctagctcagctctgagaagaagcctgtgagccggccactcccagtgaaaaccacattcttgttctcacggctcagaccccatgaagccaaccctag<br>tggcggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	407	85	NA	intron:NDUFA10:NM:004544:3/10
0	chr2	77976785	77977091	1000197	0	+	Ya5ACA839; RIP_Alu_chr2_077_01	TGCGTATGATACACCCTCACT	CTCACACATCATATGGGCAAA	SINE	Alu	Ya5	agggatagcgttaggagaaatacctaatgtaaacgatgagttaatgggtgcagcataccaacatggcacatgcatacctacataacaaatctgcatgttg<br>tgcacatgtaccctagaacttaaagtgtaataataataataataataaaattacagtggttatctttatgtggcaggattatagatgagccttatattct<br>taattttctgcattattcatattttcggtgaagaacatgtattattttcataatcagtaaaataataaaggttattaaaaaacagtaaaaaaaggtatta<br>atgcgtatgatacaccctcactatggagtacaatgaggttagaaggaacaaatttgaaaagtcacagcagatctgattcaaat<font color="green"><u>AAGAGTCCAAAATTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAGTCCAAAATTCCT</u></font>tccttctttttatttaacaagagtgaacaacagaagtatctttttcaaatatcatttgcccatatatgtgtgagtc<br>tgtttctggaatgttcattctgttctactgatctattttacagaactcgacatgctaccacactgccttgtttaccgtgactttataataactattgaca<br>tcacacagtgtgagctctccaactttgttctatgttttcaaagttgtttttgttattctaggtccactgtatttctatatggattttagaattcatcaat<br>taaaaaaatgtatctgctaaaatttttatttggattacattgaacttacagaaaactttggagaaggaacaacttaatattggatcttcttacccatgaa<br>cataata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	498	174	NA	intergenic
0	chr2	87326662	87326982	1000198	0	+	Ya5ACA855; RIP_Alu_chr2_087_01	CCATGAGTGTGGGTTCTGTCT	AACCTCTATGCACTGAAAGAAAA	SINE	Alu	Ya5	tataacatgaattaatatttgcctcaatttacagcaaaatgaagaccttctaaaattgtaactccatttatttttcccttccaacttccatgctattttt<br>ataatacattttagtatatgctatgactcccaaaaacattgttattgctattattatgctacattgtaaatattcatttaaatttacccactggaataca<br>actttgtgtttcttattacttcctgaatctataaactaccacttaataccatttcatttttgtttcaaaggtaaccatgagtgtgggttctgtcttagtg<br>aattacttcagttttcagtgatctaaaaaggtttttgtattatcttcacttgtgaagttttaactgtatatgggattgaagatt<font color="green"><u>AGAAATTATTTTCTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGAAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTATTTTCTTT</u></font>cagtgcatagaggttataattctattgtcttttcacttacattgtttcatttagcaagttaag<br>agtctaaaggtgttcttttaaaggaaacgtgtttttcccctgactgtccatgatatttttctcttttactctatgtttctgcaattcctctctgtgtcat<br>caggttttgaattgctttctgtgtttttctgctttggattcatgtttccctttcaattaatagtttaattcatttagaagcatatcttccttgttcttgc<br>tctactttcttgagcccgtaattatatgtaagacttttcattaacctttgcactctacaatattttctatccttttctttactatgtttgattctacata<br>ttttattctaacatacctgct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	478	141	NA	intergenic
0	chr2	99752981	99753300	1000199	0	+	Ya5ACA862;1175;pAlu2-99357450; RIP_Alu_chr2_099_01	TCAGAGTAATGCACACAGATGCT	TGCATTAAGTGCTCCAGAAGG	SINE	Alu	Ya5	tatattatttactattattactaattcctctcactgagtcaacttatttaattggctatcaagtcctactgctcttttcactaaaaattatctcagttac<br>atttcttccatccctactatcactgttttagttcatgctttcagactgtagcagtcacatgtattcactttatatgtaaacttataaatagctagaataa<br>gaatgaaccagaaatatgtttctggggataaaaagatgtaaaacaaatagaatcttacaatttcaaccctaaatgaatctaggaaagtccagaacaaata<br>aatcagaaattacaccacagcatgattactgctacatcagagtaatgcacacagatgctaaggtaacactgagaaagaagctac<font color="green"><u>AAAAAAAGTATTTCTG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGTATTTCTG</u></font>acttctacttcttcaaaaaagacttaggatctactcttcattccaaaagaactatgaacatatc<br>ccttctggagcacttaatgcattatattacttttatgggatgtccacagccatggctactttaacgtgtctaaaacagacttcctttttttttttttttt<br>tgagacagtcgtgctctgtcacccaggctggagtgcagtggtatgatctcggctcactggaacctccacctcccaggttcaagcaattccctgcctcagc<br>ctcccaagtagctgggattacaggcacctgccaccatgcccagctaactttgtatttttagtagagatggggtttcaccatcttggccaggctggtgtta<br>aactcctgacctcatgatcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	485	149	NA	intron:TSGA10:NM:182911:1/20
0	chr2	36090523	36090827	1000200	0	+	Ya5ACA866; RIP_Alu_chr2_036_02	GAAAACCACACCAAATTGCAT	CCGCTCTGTAGAAAATGCGT	SINE	Alu	Ya5	ttctagaaataaaatgtttaatacctgaaatgaacctatcactagaaggaattaacagcagctctgacactgcagaaagaaaggttgtgaaattgaagat<br>acccaaagagagcactgagaaaaagaaaagaaagacttttaaaaagaggaatctcagggacttgtgagttaacagtaagccacataacaaacatataatt<br>ggaataccagaaaaaaaggaaagaaaaatatgtttagaaatttaaaattctacagttgtccaaaatttttcaaatttggtgaaaactataaaatcacaag<br>attcaagaaaaatcaaagaacagcagagaacatgaacagaaagaaaaccacaccaaattgcattataaccaaattactgaaaact<font color="green"><u>AGAAATAAAGAGAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAATAAAGAGAAA</u></font>aatcttaaaggcatatggagaaacaaagacgcattttctacagagcggaaaaaaatgaccacagacacatcaaaaactca<br>gtgagccagagtcagtgaaatggaatctttaaaatgatgaaataaaaaacaactgccaactagaatacagtcagtagaaatatcttacaaaaattaagcg<br>atgaagacatttcaaacaaacaaatcagaaagaatgttttgccagcaagtgtgcactaaaataaatgttgaaggaagtgctgcagatacaataaaaatga<br>taccagttggaaaagagataaccaaaaaaagcaccaaaaattataaatataaaagcatctttattttattttttaaaagtatttaaaaataattggtcat<br>ttaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	426	106	NA	intergenic
0	chr2	150626986	150627294	1000201	0	-	Ya5ACA903; RIP_Alu_chr2_150_01	GGAGTGTGTTCTGAGTGAAAG	TAATGCCACATTCATCTGTG	SINE	Alu	Ya5	taaacttcgatctgggatcatatttctcctaccagaaatagaagctttaatatttcctttagttctttaatgtttcctttttatatggcattgataaatt<br>ctcttactcttgtttgactgaaatatatatatttcacccttatccataaaaacattttgtatatgcataaacgtctaagatgtcatgaattttttttcag<br>caatgtaaagatgctccattatattttggcttccataggttctggtaaggagtgtgttctgagtgaaagtcttttgacagtaatctcttttctttttcct<br>ggtttcttgaagttatattatgatgtacctagatgtagctttcttgccatttttactccttatatagtgtttctctgtttgaatcctc<font color="green"><u>AAGAAGCAGACA<br></u></font><font color="red">CTGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAGCAGACA</u></font>ttgtggcacagatgaatgtggcattactttatttgagaagtgcaaacccagggtagtataggtatggaaaacgggaaat<br>gagacaagaaaatatgcaaggaatgtcataaaatgtgttaccatgctgactattacatcaagctgccaagaaacgtggtagctgctcagtagctgagttt<br>actttccggcatacataacttcttaataaggggtgcaagaaggaaccacacctaggaatattccatggaagaaagaacagagctaactctccaaaactgg<br>gtaactgtgttaccttatcccttgatggccattcaggaaaccagacaatgcctgggaatataatctatccagcttgaaactaaggattcgtgtctgttat<br>taatttaga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	178	NA	intergenic
0	chr2	74125491	74125492	1000202	0	+	Ya5ACA917;Ya5-MLS48; RIP_Alu_chr2_074_01	TGGCCTGTTTTCACACCTTT	CCAAAGCAACTTGCACCTTT	SINE	Alu	Ya5	ttttgagggggacaaacattcaaaccatagcaccgcctgtgtgttaaacacccacttaggtgctggggctgtaaaaagtaaatctaggcgtggccctggc<br>acaggagggactccatttcatagagagaaaagaacacagacccttttgttttagggtgcttgctgccaaccgctctggagagacaggctgaagcaaaaac<br>accaaacatggagaagttatgacagttccccaaagtagtgacgaaggcacatctcaggcttgggaagtgtcctcggtgggtgccaggcctgcctttccca<br>gcctcttctcggtgaagagatctctggctaagttctttaccttctctgagatttggaacatactgctgtttcacctaccaaagcaactt<font color="green"><u>GCACCTTTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GCACCTTTTCT</u></font>attgtattaaatatttcagtttctccattgtatggaggcttccagcaattagtttacaagccaacttatttactattca<br>gtaactttttttgatattgagattgttcctaattttgatcattttaaacaaaggtgtgaaaacaggccaaatcttttcattcactcatgaccatttcaca<br>aagatagattcgtagaataagtattttcaaattccctttcagaaaagtagtacaatttaacactcacaagcagtgaatgtgaagccaattctccatacct<br>ttgccagcaagggtggccccaagaaccacacacagtaccccagctaaaggcaaaggtagcttttatcctggccatagcacactgctgatggtcaacaaga<br>caccaagtcc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	171	NA	intron:ACTG2:NM:001615:1/9
0	chr2	175090641	175090945	1000203	0	+	Ya5ACA928; RIP_Alu_chr2_174_01	TTTCATCTTTCTAGGCTTCACG	TCCTAGCCATAAATCACAAATCA	SINE	Alu	Ya5	cactccagcctgggcaacaatggcgaaactccctctcaaaaaaaaaagctttctgaggcctcgccagaagccaaacagatgctggtgctgtgtttatatg<br>gcctgcagaaccatgagccaaataaacctattttctttataaattacccagcctcaggtaaccctttacagcaatacaaaatggactaatgcagaagtac<br>agtaagtagcatgcatttgggtagaatggcctaaatttgaagtgagaagctttgagttctatttctggttgacataactataagtgtgaccatgaacaaa<br>ttatttcatctttctaggcttcacgtttctttttatgaggaaactagacaggaagatattcagctctgagattctattttctatt<font color="green"><u>GAAAATGAGCTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAATGAGCTTCTC</u></font>aattctgatttgtgatttatggctaggataaggtttaaactattaatacaatatctcaaaaaattaaaacttgagattta<br>attcagggatttctgatgtattacactaatgatctcatgactacttgaacaaaatacttctagaataaaatactactttagaactctcgagactaaaatg<br>atgttaaaaatatttttaatcgctatactgtaatgaacacagactaccaaaaacatttattaatgttctttttttttttggcaggaatttcttttgttct<br>ttttttgagacagttttgctcttgttgcccaggctggagtgtaatggcgccatcttggctcactgcaacctctgcctgccaagttcaagcgattctcctg<br>cctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	445	125	NA	intron:OLA1:NM:013341:3/11
0	chr2	196736428	196736690	1000204	0	+	8629;Ya5ACA953; RIP_Alu_chr2_196_01	GCTTTGCAATTCTTTTGGCA	TCACTTTGAACCAGTTTCCCTT	SINE	Alu	Ya5	catattaaaattaaaataagggtcttgctctatcacccaggctgaagcgcagtggtgccatcatagctcactgcatcctcaaactcctaacttcaagcaa<br>ttctcccgcctcagcctcctgaagtgctgggattacaggcatgagcctcctctaccacttcttataagaaaatgctcatccacatacctattcccaagag<br>agcttaaatacatttttatatagtttctatgctctcaagaatttgctttgcaattcttttggcatctagtaatactatacaaataagtaatgtaaaaaaa<br>aaaaaccacattcacttcttataaaaacatctccttaaaaagtgttccatttcaaatttatttgaagtcaaactaacaaggatt<font color="green"><u>AAACTACTTAAGGGAA<br></u></font><font color="red">GGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGC<br>GCCTGTAGTCCCAGCTACTTGGGAGGCTTAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC<br>CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTACTTAAGGGAA</u></font>actggttcaaagtgacaccta<br>ctttgaaatattctataaatcaacagaaattcctaaatctgcatatgggagataaagcattttaaacatcataaaatatctcagtgttaaatatttttaa<br>aatttttctgaacactggccttcaaaatgccaaataactgaatatatttcagcaatataaattgaagaatattctttttacccagttgttggcatggcaa<br>atctttgtttctcacataatcccatttcaataacaggaaaatttacctcatgaacccaaagacgtttaatcacttctgtggtttctgttgtttctggtct<br>tgacaaacaaacaccttgaatgacacgggagaaatcacggaggttgaacaagtagtgagattt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	450	171	NA	intron:DNAH7:NM:018897:40/65
0	chr3	190290649	190290937	1000205	0	-	Ya5NBC51;Ya5NBC345; RIP_Alu_chr3_191_01	ATATTCCAGAAGTTTCCTTACATCTAGTGC	AAAGCTTTAAGTCTCCACCATCTCT	SINE	Alu	Ya5	tagcatttcactaagaatactgcatgcagcgggagggagaaagtcctccaacacttccgattactaattactccattcacaatttccatgatttcaatca<br>acctccaagtaaagctacaccctcctcttagacttgaatatagattggttgggtttctactgtgcctcaagaaatacactgctactagcaaaaacatttc<br>acagctcagtgtcaattgcaaacagcagattgtttctgccttagaacgtataaacttgcaaaagggggtccagagtcttacacttttgcccgccatctct<br>tcttccttcattatcctgaggggcatgcaaagctttaagtctccaccatctctgctgtacactttttttcagaataaaagtatcctgattaa<font color="green"><u>CAAAGCAT<br></u></font><font color="red">TCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC<br>TACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CAAAGCAT</u></font>taa<br>ccctggacatgctgaccactctcatggctgtaggggcactagatgtaaggaaacttctggaatatttaaggtttctattttctctcaccattttaatata<br>ctcggaaggagggaaagagtaagaatgtaaaataaacaaacaaaaaaacctagaaaacattaactgttcaaaaaggaaaccattcaatgcaaagctcagg<br>aaaaaaaggggggagtatttaaatgtggtattaaaaatggtttagcttctttggtaatctgaaaaaagtatatagccgggtttacatcagatccaggaaa<br>cccgtgtaggaatattttatctctatttttctctttgcattttatgcctctctctctctttttcctactatctctctttttcaaaaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	437	140	NA	intron:IL1RAP:NM:001167931:3/12
0	chr3	17731701	17732007	1000206	0	-	Ya5ACA1002; RIP_Alu_chr3_017_02	GGGGTTGGAGAACCCTGTTA	AAGGAGTAGATTGTGATGGCCT	SINE	Alu	Ya5	ctagctttacgtactgctggaaagcagtgtccctgtctatctacaatttagtcttataaagcagcagtcccccctttttggcaccagggaccagttttgt<br>ggaagacagtttttccatggatgggggtggagatatggttttcggatgaaactgttccaccttagatcaccaggcattagattctcataaggagcacgca<br>acctagatcgctcacatgtacagttcacaaaagggttagcagtcttatgagaatctaatgccactgctgttctgacaggaggcagagctcaggtggtaat<br>gtgagcaatggggagcagctgtaaatacagatgaagctttgcttgcttgtctgtggccccaggggttggagaaccctgttat<font color="green"><u>AAAATATGGCTATTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAATATGGCTATTTTTA</u></font>tgcttcagttctcttatattcttattataatggttatttttccatatttctttggtttgtcattcttgtataggc<br>catcacaatctactccttgttatgttttctagtcttgtttcccactgtttttttgttggccatgttatgacttattaaagcatcatgtattatagcaaca<br>attcttttattcatatccttttatactgattaaatgctatctcttctttttcgctcatactggtccttctagcactgttgacgttttgggctgaataact<br>gattttttgggggggaggggtcctatcctgtttgttgtatgtttaggtatgtttagggatgataggtttaggtatgttcagctgcatccctggccactac<br>tcaccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	457	132	NA	intron:TBC1D5:NM:001134380:1/22
0	chr3	72379727	72380006	1000207	0	+	899;Ya5ACA1020; RIP_Alu_chr3_072_01	AATCGCCTTCACTTTTCTG	CAGCAAGGAAAGAGGTAGAA	SINE	Alu	Ya5	agcagtcaaacaggaccccacacttagaaggaccctatgcttagttaatgctcagctgtcaccgacttgaaattctcaatgattttttaacaggggtccc<br>tgcattctcactttgcactgggccctgcaaatgatgccgcttgtgctgctggagaaccctcctgccctctttgcaagttcctctgatctgcacgctcaac<br>tagtttctcaatttttcttcctcctgttcagaatcaaggggcactttctttgtattgtgttcacagctgagattcaggttctgaagtcacccaggcttgg<br>gttccaatcccagctctgccgctttgtagctgtgcactcccaggaatcgccttcacttttctgagcctgcgtttccttgtctgt<font color="green"><u>AAAAACGAAGACAGTA<br></u></font><font color="red">CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACGAAGACAGTA</u></font>atag<br>tttctacctctttccttgctgcagggatgaaatatgattttttttctgtgtggcaatcactaaccccaggcccaggtacacagtagatactccactgggg<br>ctcagttgttactgcgcgtaaagaaagctaagatgtcaagtcagctgagtggaccccaatgtctagaccaatagcatgtgattcccaaggatccccaaaa<br>gctcagatcctccaagaacaaacccaagaaagccccaggtttcaagctgacgtagggagacagtctttaccttcactctatcatttatcaaatgtgtcca<br>tagctaatgtcacgttcacatgagccctgtgaaactggcattaaaactgccttcattttatagacgcagaagaacgaacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	377	81	NA	intergenic
0	chr3	81346083	81346380	1000208	0	+	Ya5ACA1024;pAlu3-81151601; RIP_Alu_chr3_081_01	GGAAAGGAGCCAGAATAGCC	CAAACATCTCTGGGGAGAGC	SINE	Alu	Ya5	aacacttttatgtacacttctattgaagcacatattcttgccctgtgagtgagaaaaggttaacactttattaacttttgacttctttttttcccttcta<br>aatgtgactgtggaaattggtagtcatgtaggaaatgcaattccagtaccacttgcctagtgagcaaatacggtctgttctgctcccacatgtacacttc<br>tctaacactgattaccttatacataatcaagactagaaaataatggaagttcacatgcaggtttttctagggaaaggagccagaatagccagagtacaat<br>tgtaagtttcatcagaagaggaaaaactccttagttcagctgctatactgatagaagcactttcagctgtacttcacgagagt<font color="green"><u>AAAAATGAGTACCTGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>GACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATGAGTACCTGTG</u></font>tgcagggctctccccagagatgtttgctgccagttttgcacagcctccagcttgtggcacgtttctcttgatcctgtgaccccta<br>aatgggagctccgctggctcagagcacaacttgctctgcatcatcccagtacccgcaagccaggatatacaacctattgttctggcaattttaaaaaaat<br>tatcctctgtggccatcaccaatcacactcatctgcctgctttgtcatttgtgttatatttccacatacaaattaatattttatttaaaactttagtaac<br>aaagttaaataggttttgaatccctgcccatttctatttccaataagccgtgttatttttagtgtgcagttttgaagaaaaaaagattatccaataac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	470	156	NA	intergenic
0	chr3	103547923	103548231	1000209	0	-	18035;Ya5ACA1044; RIP_Alu_chr3_105_01	CCAAAACACAATAGAGGAGCTA	TTCTACCACCCCAAAAATGT	SINE	Alu	Ya5	taaattccctgagataaaattaaattcagcattctgttttctaggttatatattaagaatccttattataattcttctcacttaaatcctaacttattcc<br>aattttctgagccagataaatgtctcttgttcattctaccccatgttgcctatttctaggtcaattcttccttctaaatacagataatataccaaaacac<br>aatagaggagctatggttaaaatcgttcagtctgaagccaaatctctctgagtttgcatttttacagttccactcaatatgacctttaaaaaatacatct<br>ctctggggttttttggtaaaaaaaaagatgactgcatctaatatgtatgattaatgtgaggattaaatgaatattatatatatcgcattt<font color="green"><u>AAGCATTCTC<br></u></font><font color="red">TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGCATTCTC</u></font>agttacatttttggggtggtagaaaagatattggaattgttgttttcttcccacttgccaaattttcttttctttttggaa<br>gatgtattaaagctttcaattaactttaattgacatatttatttaaaattcaacaaattagggtatactgtctaagtactgccaaacactaagtattcag<br>gatacagtagaaaataaatgaacagaagagtacttaaactttctgacttcttaaactttctattttaagaaaaatattggaagaaaatatacaaagttga<br>aaatatacagtatattagagagtgacaagtaatatagaaataaataaataagggaaaatacaggaacagtggtgcattggtcaagaaaagctgttttgtt<br>ttgttgcat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	552	233	NA	intergenic
0	chr3	189955421	189955709	1000210	0	-	pAlu3-191357341;Ya5ACA1048;10422; RIP_Alu_chr3_191_02	ACCACGGTATGACCCACACT	GCTGATGCTACTGTTGTCACCT	SINE	Alu	Ya5	gttagaccacggtatgacccacactttgttttccgtgagttattaaagatgtcttgagggaagaatgaaagttctgcaacctgtagaggacccataatgc<br>cctaactcattcatttttaatatgtgtctaaataaacccggttaaggagatatatgaattacattactcacttcggggctttataaggttcttgcaaaaa<br>attaacaataatactataatttatcaactctaagacacattttttcacattttaatatctctaaaattagaattcatcttatagtgtcattttatattta<br>attagcaacttttttattttttagtgtacataaaagaatgatgtggttttggatcaatgtcatcttaaatttgattaaaaagcaaaat<font color="green"><u>AAAAAACACAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAAACACAG<br>G</u></font>tgacaacagtagcatcagcacttctaaccaaagtaggagatcttcatcaagcaccttatgataaggaaacatttatgattgctggagaccaaacatatg<br>ctcccttaaaatatgataataagaaactataataccccacttcaaagtatgcctgtttggcagaagcattattttgagatgattattttgagagactgag<br>gacacagaagaagctctgaaaacacgagtagatgtaacagaaatttatatctatgaagaaatctccatttgtaaaggtgtctccctctctacaagagaga<br>aaaagatgatctaactcaccgatatgcttatattaatagaggtggcaccaacttaaatgtaactttagatttaaatctgccttaattct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	715	413	NA	intergenic
0	chr3	68890216	68890495	1000211	0	+	Ya5ACA1050; RIP_Alu_chr3_068_01	AAGGCTTCCATCTTTCCTCT	AAACCACAGGGACTTAATGC	SINE	Alu	Ya5	tatatagaatatagccatggagaaggaataaagccctggtccctcccatatagaaaaagtacagttccacagctggtttagcagtaaactctcttcatgc<br>atggggaacacttagtgatttgtccttggtagcaccatgtctgccaaagaccacactgggcttactgcgcttgcccatggctagactaaccaaccactct<br>tgcttcagctactattattttctgtaatactgaactaaatggagtttctttctaaccctggacttaccctatctcacattctgtacctctgctaccaata<br>cgatagcactataatctgtgcaaaaatctaacatcattaaaaggcttccatctttcctctacaaggctaaatagaaggtgatattaaag<font color="green"><u>AATAAAATCCA<br></u></font><font color="red">TGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAA<br>TACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCA<br>GTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAA</font><font color="green"><u>AATAAAATCCA</u></font>cacacattc<br>tccacaaaacttttaatttgcattaagtccctgtggtttcacaattggctggcactgttcttaccttctttcctgacaggacaaggccacctgacccaca<br>actaaatcacaatgcgtgactatcaccctacacaattcatacactgtcacctccagttgatttactagaggggtttaagaggaactttttttctgatttt<br>tttttaattatactttaagttctgggatgcatgtgcgatctgttacataggtttacacgtgccatggtggtttgctgcacccatgaacccatcatctata<br>ttagatatttctccaatactatccctcccctaccccccaaccccctgacaggcccttgtgtgtgatgttcccctccctgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	399	108	NA	intron:FAM19A4:NM:182522:3/7
0	chr3	50063021	50063022	1000212	0	-	Ya5ACA1071; RIP_Alu_chr3_050_01	CTGGGCAACATAGTGACA	TCTGTCTGCCACCTAGAAAT	SINE	Alu	Ya5	tgagtagctgggattacaggcgtctgccaccacacccagctaatttttgtatttctagtagagatggggtttcaccatgttggtcaaagttctatactta<br>atttatcaattagtcttatatatttaaatgataaaatgaaataatgtggtcttaattactgctgtaaccctgatacctacactaggagacatatatacag<br>agcagggggaatcaatagctgttgaacaactatatgtaggcagcaatcaatgaaaacttgaacagtggggcacagtggctcacgcctatattcccaacac<br>tttgggagactgaagcaggaggacggcttaaggccaggagttcccaaccagcctgggcaacatagtgacaccctgtctcttaaaaaaaaaaaaaa<font color="green"><u>TTAAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TTAAA</u></font>gttgtatatatataaaaggttaaatttctaggtggcagacagaagatacatagaaaatccaacaagcacattcacaggtaggtat<br>atattaacaggaataagtgcatctacctattcgccaagagaaataacaattccgtggtgttttgttttcttttttgagatagagtctcgctctgtcaccc<br>aggctggagtgcagtggtgtgatctcagctcactgcaacctctacctcctgggttcaagtgattatcctgcctcagcctcctgtgtagctgggattacag<br>gtgcccatcaccacacctggctaatttttgtatttttagaaaagacggggtttcgccatgttagccaggctggtcttgcttctgacctcaggtgatctgc<br>ccacctcagt	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	precise insertion position unknown	60	366	75	NA	intron:RBM6:NM:005777:6/21
0	chr9	107400989	107401288	1000213	0	+	Ya5NBC61; RIP_Alu_chr9_104_01	TGAAATAATCCAGTTGGGGAAG	GTATATCTCTACCGAGACTCAGTTTTTAGC	SINE	Alu	Ya5	aggaaacatgacaccaccaaaggaaaacaatatttctccagtggctgaccgcaaaagaaatggaaatatataagctgcctaaaaagaaattcaaaacaat<br>tttcttaaggaaactcagtgagatcaagagaacacagaagacaagtcaatgaaatcaggaaaacagtttgtgatctacatgagaaattcaacaaaaatat<br>agatttaaaaaaaaaaagaaccaaacagaaatctagaagctgaataagtcaatgaataaaataaaaaacctaatttagagcttcaacagcagactagatg<br>aagctgaagaaataatttctgaacctgaagacaggtcttttgaaataatccagttggggaaggggagaaagaatgaaaaaacatg<font color="green"><u>AAAAAAATCCTCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAATCCTCCTT</u></font>atgggactatggagcgccattaagcaaacaaatactgcattatgagaagaaattgagaaaggcacagaaaggttatttaacaaaat<br>aattgctaaaaactgagtctcggtagagatatacacattcagatctgtaatacatgtatgcaattcaataaatgtgatgcctcatatgaacagaatgaag<br>gacaaaaaactgtgattatgttaattgatgccaaaaatcatttgataaaattttacattccttaataacaaaatctctcaaaagagtcatatacaacaga<br>tgcacagctagtattatgtcgaatgaggacaactgaaagctttccctgtaaggtctgaaacaagataaagatgcccactttcaccaatttcatttaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	55	493	180	NA	intergenic
0	chr4	181549441	181549742	1000214	0	-	pAlu4-182133785;Ya5ACA1153; RIP_Alu_chr4_181_01	GGCAGGAGTTAGCCAGGTAG	CCTGGGTTGTCCTTCTGTGT	SINE	Alu	Ya5	atctccctgtacttcactgaatattctggaatgcctaaaagcaaccctaattattaattcatcaatttaatcatttaaaaatatatgtgtacctaagata<br>taccagatctcagtctaggaatataaagaataaaacagtccttacctgaaggtttttagattagagaaaaacagtgacacggaggaagtaattaaaatat<br>gttattagaactgccaccaaatggatatgcacaaggtatcgtggaggtacagtggataattacctaaaccatccttgggtatcagtgaaagcttcttagg<br>ggaatattaccttagagaaattttaaagtttgggcaggagttagccaggtagagcagaactaaagaaaagcactctagatagatattt<font color="green"><u>AAGAAGACACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAGACACAG</u></font>aaggacaacccaggagtgtttttcaaggttattctacagactacaataaatcacagtaattattaataattgtctcacttacatgg<br>caaaaagtcgtattgtctcatcaatatccattcttctccttctttaaaaatgaaatcccagcattttagctgggcagttggctgaccatctaaagactgt<br>atttcttagtctcccttgcaattaggcatgggaatataactaagtcccagtcagggatatatgagcagaaggaaatttgtaatttatttttattttttga<br>aattttcataaaatctagctcccagaagaatgaatttgtgatttctaaactctgtcttcaaaggaaagtggaatgacttctattctatctttaaagctgt<br>ct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr4	113469989	113470281	1000215	0	+	11642;Ya5ACA1174; RIP_Alu_chr4_113_01	CAGGCCAAAGTTCTTCACAA	TGGCATGCTGCTATAATGTG	SINE	Alu	Ya5	gaacgtatttaccaaagaacttgtaggctaaaattagagagtgagctagtcctaatttaattcctagccatcagaaatcttaggtcatcgtatctccaaa<br>tttttattattcctacatacaaaatggaaatcaacaaatgtaagttacttaagccacaagcccattaacaagaacaaataaaagacatattttgatattc<br>agacggaaagtatcacaatatcaagcatttgttaaacatctaggatgacgcacatattttatcttctagatgaggttagacaacatacattatatcaaca<br>caggccaaagttcttcacaaagaatattaaatatgctaacgaaatattctttgcttaaccttcaagcacattagttttatttattt<font color="green"><u>AAAAATGTAAAGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAATG<br>TAAAGAT</u></font>gactaattctaaacaacagtaaataaaatgtactcatagcctgtaagtgtatttgaatcttgtaagttacacattatagcagcatgccattac<br>tctcaaggcaaaaagcttcataaaaactgatttttaatctctagaattagatgtaaacaatagggaaatctatgaattttctaattagatgtagtcactg<br>acctagtagcccgctatctatacacacatgtgtacatacacatatacacacgtacacacacatttgtgtacatatacatacgtgtgtataaacacaaaca<br>catacacatacatgtacatatacatatacagtcatgtgccacataacaatgtgatgttttggtcaatgatggaccagatgtatgatgatggtc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	189	NA	intron:C4orf21:NM:018392:22/28
0	chr4	42088057	42088058	1000216	0	+	Ya5ACA1184;pAlu4-41937980; RIP_Alu_chr4_041_01	TGGCTCTAATGACCAAAAGGA;NA	CCCAGGTGATTCATTCCATC;NA	SINE	Alu	Ya5	atccaaggctcttgtttttaaaaaacatgaggccgggccccaagaatatttgaaagggtttcaaatggaaaataaaacaaggggttggcaagtaaccgct<br>tcttgatgaataaggtttttccaggatttttttttttcgccccacggaactttgtattttccgtgattcacaatgtttggcgtgttctatatcacaaaag<br>cagtcttggcttaacgacccccatgaacaaacttaggaatgtgatactacttattgtactgtttatagtatgtctatttacctattgatcttactttttt<br>tcttaagcaactatttctctcattagtatgctatagtgaaaaagtttgcaaatgttttcattggctctaatgaccaaaaggaat<font color="green"><u>AAAAAGAAACAAGATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGAAACAAGATT</u></font>ttattttgctacaaataatgtggtggtgatttttctttccagaaacgaaatcctgaagttcgacatgtagatttggagatact<br>gtgagtttgatggaatgaatcacctgggtggggaccttggaaacaagtttgtccgtccactctacaaagtttcctcctctcctacactgaaagactcagt<br>gccatgcagaagccttttttttaagatgaaggaaatattttatgtaaagagcaactcagcaggacacagaactaaaactactacttacatctaacagaca<br>cactacaagttgaatcaatttgaaaatcatgtttttatgcttccatagggaacattttggttatttaaattgttcataatgtcccatatttcacctgttc<br>a	Other;Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	467;NA	150;NA	NA;NA	intron:SLC30A9:NM:006345:17/18
0	chr4	137943840	137944132	1000217	0	-	Ya5ACA1257; RIP_Alu_chr4_138_01	AAATACCAGTAACGGTGTTGAGC	AATCTTGCTAAATTAAAGCAGAAAA	SINE	Alu	Ya5	tagtagtcagatatagtgttttaattaaacatcagatattcgttgaatagtttccacaagctccgttttgttttgataaagcatggacattgaattagga<br>aataagtttgaattttattcttgctcctcgctcagtaaccaatttgggggaagcttcttagaagtcttttagattcagtctttttttttctttttggaat<br>gtaaaacatcggaacatctaattcataggatttttttttataaataaatgaaataaattgtgtaaaataccagtaacggtgttgagcttaagaaaatttt<br>tattctgaactttgggaggccgaggtgggtggatcacgaggtcaggagatccagaccatcctggctaacacggtgaaactctgtctgtatt<font color="green"><u>AAAAAAATA<br></u></font><font color="red">CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGTGAACCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCATTAAAAA</font><font color="green"><u>AAAAAAA<br>AA</u></font>gttttttctgctttaatttagcaagatttagaaggatattaatattaataatttatttgacttttacacaaattgtaggaaactttgtattgtaatta<br>aaatccacaagagaaataactcattgattagtaccaagaaattcatttgggacttgtcttttcctgaatgacttaaatgtgttcatttgattggcaccat<br>gactaacccaaaatcaagagtgacagcaggccaatagggagaaacaagatggcaagtgcctgcacagaatggaagctgcagacccggatgtaaactagta<br>agaataaactagactaatgagttgctgaagtctgactgtgacctggtgtgagagtgagaagcccataacggctagagatacagggagaggttc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	466	155	NA	intergenic
0	chr5	12186501	12186791	1000218	0	-	Ya5NBC123; RIP_Alu_chr5_012_01	ATCAAGTTGACACTCAGTATTCACCAC	CTAGTCTGCAGAACTGTGAGAAATGTA	SINE	Alu	Ya5	ttatgcagaatgtttagtttcagacaaacattgctgaaatgatgggatgaacattaaaactgcttttatgtactaaataacaattttgtaatgttataga<br>tcatctcatttataatcagtacaaattcatcttctctataatttccataaatgcagtacatcaatttatgtgtatttaaagttaaaattaaattgtatgt<br>tgtttcaacatcaacaacctaaaaatgcaagtatttttaaaaatctagttgtattgaagtattatcaatccaatcaagttgacactcagtattcaccacg<br>acaagccgcttccacatttgtaggcattttgttacagcagcattccacttctcactactaatttctgtttagttcattcttactgca<font color="green"><u>AGAACAAAATACT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA<br>GCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAACAAAA<br>TACT</u></font>acagaccgggtaatttataaataatggaaatacatttctcacagttctgcagactagggaagacctggatcaaggtgctatcagattcagtgttga<br>gtgaggactcgctctctgcttccaagatggtggcttgttgctgagttctacaaaggataagggtccaaacattgtgtcctcacattgccgatgagatgca<br>tgggccaaactgctctctgaagcatcttttaaagtcattaattccattcatgaggccagaatcctcatgacttcatcacttccccaaaggccctacctca<br>ataccaccacagtagggattaagttttaacatgaatattggaggggcacattaaaccatagcagtgctctttgttgaattttgtcaagtat	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	490	180	NA	intergenic
0	chr5	71916562	71916852	1000219	0	-	Ya5NBC311; RIP_Alu_chr5_071_01	TCTTGGCAAGGAGATGTGAA	AATCACATCCGAGGGTGTCT	SINE	Alu	Ya5	ttctttcttttttgaacatctgttctacatgtgaccatattcactttttctgtagttttccccatttttcaaaattcttgaaagatcagtgacagtggtt<br>ggatgctttcattgtacaggttctttttgtatcttgaaaggtatttttttcttggcaaggagatgtgaacatatttaggaaattaccatatcttttgaaa<br>cttttccaggctaagtaacaattttattttacaaagaagacaaaaataaaatgaaagttaagtgattctgtagggcctttcacttgatgatctgcatttt<br>attccatttccctttaaactattgaaatgcctttgttctatcagtaaagtgttatatcattatgtctcagtattggatctgctttta<font color="green"><u>AAACTGGTGTTCC<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC<br>GTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTGGTG<br>TTCC</u></font>aaggtgtgtagacaccctcggatgtgattttttaaaatgagataaaatcatgggacacattactaatatcctagaaaaacaaaaacattaggagat<br>agaccccatactatactggatatttataaactttaacatacagcacaaataagatgattggagagaatagagcttcttcaatttttctgtacttaatggc<br>ttgacaaataatattaatagctaatttgatttttctatcacgcccttacaccactaaacttgagtctgatacaataacttaaatggtctctgtgggcaat<br>gcatcatttgaataaaaacagtctctggaggttgctttcatcttccaggaaggttacttcttccctaagatgtcatccaatatgggggttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	584	279	NA	intergenic
0	chr5	21651584	21651891	1000220	0	-	6000;Ya5ACA1320; RIP_Alu_chr5_021_01	TGCCCTTGTATTCTTACAGCC	GATTGGTGGCTCCATCATGT	SINE	Alu	Ya5	attcgtgtgtgtgtgtgtttgcaagagagatttttttcaagatattttctcaatattgaaaaaattggaccacttttttttagcccattcatttatattt<br>tctagaaattagaacctagtctgtcattttgggttcagttactttcctagacttatcatttgcatttacaatttaaagacttctaaaaactgcagtagtt<br>gttctggttggttttacactttgacatcatcatctagttgtcaacattgttatgtaataaagtttatcaatgtttacattaattagtgcttacagttttt<br>taattttcattttttgaaaaacatcatactgtgaggttatttatttttaaatgcccttgtattcttacagccatgaagtttaatt<font color="green"><u>AAAAAAAATTATTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGAGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAAAAATTATTTT</u></font>taccctgggaattactttgaggaaagaaagtggtagatttacagttttatttatcaatgtgatagttctgggactca<br>tatgtattgtacatgatggagccaccaatctcatacttaacatgtagctaaccacatttcacttaactaaaaatgtaagtgatggtaggttaagaacata<br>catgctattattaagctttaactgaattatgatttttatctttaccttatcaatttactagaaaagtttgttttctaaaatcatattaattgatcattat<br>tctttttttaattctatatttcaatgctttattatgtatttacaaatggcattttttttcagtaccagaataatttttttccacagctcatcagatattc<br>tgaattct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	479	156	NA	intergenic
0	chr5	82906076	82906378	1000221	0	-	Ya5ACA1352;Ya5-MLS06; RIP_Alu_chr5_082_01	TTGGGGAAATTGCTCTGTTC	AATGCTGGATGAAGAGCAGG	SINE	Alu	Ya5	gattcagactagcacagcttcagctgattccttgaggagtcctggagttcaaatggcccttcagagtagtcccacattgtggtgaaatgagtctgagcct<br>ttatatagcagtcagtcattggatgtgggctgccctaggaaggatgtgtccttgggcaagatgtgaacacctggagcacaatcacttcctcaagggatga<br>cacctaaagaccatcttctgagcacttccaataagagccatttcatgtcaatcacatatgtctccttgtcttggggaaattgctctgttcttttggacac<br>ttgtccaggtacacagtgctgtgcctgtactcgaataatctgtgcaccaccaccttgccagcccatgccaactctgcttccttt<font color="green"><u>AGAATCCTCCAGTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAATCCTCCAGTCAG</u></font>ggagagccctgctcttcatccagcatttttcatgtttgtaggcaccaagaagatgcttatcatgaagtattgtttatcctg<br>gagtatatcatagctgtcctgaagggcttaattcttttcactttttgtcctgctcaccattctagagaaaacagctatttcctctcattcatccatattc<br>ttgatttcttcaacatttgttcccagtataaaagcaagttctctacctgaggactattggtacatacactaatatggtcacatttagtttttggatattc<br>atagttttttttgttttttgttttttgtttttgagatggagtcacgcactgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacctcc<br>acc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	476	157	NA	intergenic
0	chr5	88043155	88043466	1000222	0	-	6653;Ya5ACA1355; RIP_Alu_chr5_088_01	GGGTGGTCACAAAGACCAAG	TAGGCCATGTTTTCCTCCAC	SINE	Alu	Ya5	cacagtgattagcaaacaagatgaataacactagcttcctattttatatatcttttgaaaattaggtcgagccaaattagtgtgtaaactcacgtagtat<br>tttgctggacatggaaatgaaattttttccctcaaaaaatactttgtggtttgtagcctcaaaatgagagaaccagatcaaatccagaccaatgtttctt<br>ggatccaagtctctaccaaacactatgattagaaagaatggtgaggactgagaattgggtggtcacaaagaccaagatataatataagaaaaatggttta<br>gatgttatgatgttttacccaatatctcactgcaccgatttgcttgccattatggaaacagctagtagtggttctgaaagtcatt<font color="green"><u>AAAAGTAGTAAAAAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAGTAGTAAAAAA</u></font>aaaaaaaatgtggaggaaaacatggcctactcagctttgatggaagtggcttgttactgcttaatagctagaa<br>tgctttggaatcctatattgaaaataaaaagtgtttggttgttcaattattctgtcattgtcaattcccagacagttggctaagtttaatgatcctctag<br>ggatagagaagactctcaatcctgtaggcataaaagtttgacacacgtaggatatagtaacattgaactaacaaaatcttatgcacttagcaaattcatc<br>ctcttacctcaggacctctaccataggtatgagaatcttctaattcagaaatagaagaaaaccaaaagaaagatactgaattactccaccctggtgataa<br>taaatattatat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	500	163	NA	intron:MEF2C:NM:001131005:7/11
0	chr5	103062317	103062622	1000223	0	+	Ya5ACA1368;3715; RIP_Alu_chr5_103_01	TGTCAGAGGCTAACAAAATGA	GACACAGTGTTCACATCTATCTCT	SINE	Alu	Ya5	gaattctggtagaaattgaactatcagatgctgggttggaccagattaaatttaaggccctctcttgccttgatattctgtgaattacctttcagtaact<br>cacaaatttatggtgcccttcatgtcccaccatatggactgtcatctattccactctgtagccatgactctcttgtggagcctctctttcatcccctaat<br>tagtgatacacaagagagaatgggtgaagtactcatttaccatcttacctgcttcctaacaaatccacagccaaggggatgtgctctgcacaatcagagg<br>tttgtcctggcagatgggtaggcttgattacgtatgtccacatactattctttgttgtcagaggctaacaaaatgatgacatggat<font color="green"><u>AAAATGTGTGTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAATGTGTGTGTG</u></font>tgtgtgtgtgtatgtgtttcctactctgtagccttatagtctacataaaagagagaacagtgtacttttccatgtataaa<br>gaaagtagcaaaaaaaaaaaaaataaggtagagatagatgtgaacactgtgtcacatcccattgttaaatgtattcagaaggtctggggtgaagatggtt<br>cagtgcacctcttctggttatacctgggcacgaaagctggcagaagcagatttgactcaggactagcagttctctaggactaaatggatatgggaacaac<br>agggtcttgagaactcaagttgaatgtcaatttctgtcacaaatctgacacatactcaaagatttcattacagtcaaagagcagtactggtggggcattt<br>aatagg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	498	178	NA	intergenic
0	chr5	142935381	142935678	1000224	0	+	Ya5ACA1410; RIP_Alu_chr5_142_01	ACCAAGCCTCCTTCTATGGT	CTCCTTTTCCTGCTGCATGT	SINE	Alu	Ya5	aggcaaagtgcaaggttgtccattgcatcatgatagcaatattgaaaagctgaaaaacaatctaagtgtccatcaaaaggaggcttgctaaaataattat<br>catataacttaacaatggaatgtcagtaacccattcaacagagtgaagtagtgtaacgttcagtatttcattgtacaataaacaatgatttttttaagtg<br>aaaagtttattgcttttaaaacaccttttattttaaaatatttgtgtactcactagatgttaaaaaataatacaataatcctacgtatcttttaccaagc<br>ctccttctatggtacatttaaaatatatcttaaagaaaaatataataggttgcagaatggaaaatatggtaggatcctatttatgt<font color="green"><u>AAAAATAAAAGTAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCGGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATA</font><font color="green"><u>AA<br>AAATAAAAGTAT</u></font>accaaactgttgacactggatatctctgtggaatggaaaataacatgcagcaggaaaaggaggaaaatgagagattttaatttttttc<br>aagactgagtctctctctgtcacccaggctggagtgcagttgcgcgatctcagctcactgtaacctccacctcccgggttcaagtggttctcctgcttca<br>gcctcctgagtagctgggactacaggcacacaccaccacacttggctaattttttgtatttttagtggagacggggtgtcaccatgttggtcaggctggt<br>ctcgaactcctgacctcgtgatccgcccctcttggcctcccaaagtgctgggactacagatgtgagccaccatgcccagccttaattttcttaattta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	481	169	NA	intergenic
0	chr6	25898000	25898300	1000225	0	+	NBC212;Ya5NBC132; RIP_Alu_chr6_026_01	CTCGTGATTCACAGAAGTGTTGTAAG	CGGGGTTCATCCTTAATACATACAT	SINE	Alu	Ya5	agagtaagacagagaggggttcattttttattttattttattttttattttttgagacgttgtctcaccctgtcgcccaggctggagtgcagtggtgcag<br>tcttggctcactgcaatccccacgtcccaggttcaaacgattctcctgcctcagtctcccaagcagctgggattacaggtgcctgccaccatgcccagct<br>aatttttgtatttttagtagagacagggtttcgccgtgttggccaggctggtctcgaactcctgacctcaagtgatctacccgcctcggcctcccaaagt<br>gctgggattacaggtgtgagccactgcgcccagccggggttcatccttaatacatacattagagatatagattctgtttttatct<font color="green"><u>AAAAAGTCTTTATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAGTCTTTATAA</u></font>aaatctgattgaatggttgaatgctgtgctaaaatctgcataatatcttacaacacttctgtgaatcacgagacagtttt<br>gaatgctaaatgtcagttaacagatctaaagggaccaacatctgctttcccaaattatatgaaagaagatcctgatccctcatcaggtgaaactcacatc<br>agacaacagtgtctgcatttctccaaaacccgcctcagccccatggccactttccagggttatcctgcctaccaagcactctctttcctcagaaaaactt<br>gggggaaaatgtagaataataattttttgaagttctgaccaacttcttgaatcactcagcatgtttttgactgcaggtacagaaaacgctgactcaacaa<br>attta	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	458	228	NA	intergenic
0	chr6	50452479	50452795	1000226	0	-	Ya5NBC327; RIP_Alu_chr6_050_01	AGGCAGGTTCAATGTTCAAA	TTGTCTTATTGTGCTGGCTAGA	SINE	Alu	Ya5	cactctatttagatctttgtcatagatttcttccatcaaaattttgtagctttcagcatacaactgtgtatatgttttattcaatttatcactgtgttta<br>atattttgagtgattgtaaatggcactgtatttttagtttgctgtccacatgttgattgctgctatatagaaatgtaattgatttttgtacatttatttt<br>atatcctgtgacattgtttaactcatttattagttctggggatattttcatagatgccttgatattttatatttagacaatgatgtcatgtacaaacagg<br>gatagttttatttttccttctttaatctgtttacctttttttttcttgtcttattgtgctggctagaacttctggcaatatgttgaat<font color="green"><u>AAGAATAATGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAATGAG</u></font>aatgggtatccttgagttattacaaaccttagggagaaataattcagtttttcaacattaagtatgatgtt<br>aattgtagatttgttgtagattcttcttatcgagttgaataatttcccttttactcgtattttctgagagtttttttttaaaatataaattgggtttttt<br>ttgccccctttttctttttgtttttctgcgtggattcatataatcatgtgatttttgttaccctgttagtatggtggactacattaattgatttttgaac<br>attgaacctgcctggaatccttagaataaagtgcacttggtcataatgtatggtttttaaaagtgtattgctgaattctatttggtaatattctgctaaa<br>aactttatatttacatt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	668	339	NA	intergenic
0	chr6	129737090	129737384	1000227	0	-	Ya5-MLS19;2128;Ya5ACA1492; RIP_Alu_chr6_129_01	GGGAGATTGGTGGGGAATAA	GGTGGTGTGGCTAGGAAAGA	SINE	Alu	Ya5	accccaaggatcctgtgacatcagaacttcccttatacaagcccccacatgctggggctgtgcagtctgtgtagggcccaaagggtctggctctgggcga<br>tggaactggccagggaatggctcaccatgctgtgtgccctgacatatctggcccagtggttacataactcccaccaagactgcatgaggctcccaagcat<br>atctttcccatggagaaagcaaaatatacagtaagaaaacaaacagctcttcagaaatacagattaattaatttaaaatttgaattctgagaatagtacc<br>aagagactaagtaaaatggagtgactgtccgggggagattggtggggaataaaactatgacggagtaaaaagaagttgatc<font color="green"><u>AAAGAAAGTGTATAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC<br>GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG<br>GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCNTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAGA<br>AAGTGTATAATTTC</u></font>agcaaagaaagcttccctttggacagggttggcactctttcctagccacaccaccatgggccttttattttcttttttgtgagata<br>aggtcttgctctgtcacgcaggctggagtgcagtggcatgatcttggctcactgcagccttgacttcccaggctcaggggatcctcccacctcagcctcc<br>tgagtagcctggattacaggcatgtgtcaccatgcctggctaatttttgtatttttagtagagatggggtttcgccatgttgtccaggctggtctcaaac<br>tcctgggctcaagcaatcttcccacctcagcctcccaaagtgctgggattaccggcatgagtcactgcacccagccaccatggttatttagatag	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	437	123	NA	intron:LAMA2:NM:000426:40/65
0	chr6	138947749	138948055	1000228	0	+	Ya5ACA1504; RIP_Alu_chr6_138_01	TTCGAGCCCATGGTAAGTTC	TGCAGCAGAATTTTAGACTTTCA	SINE	Alu	Ya5	aacaaccatccagtcctgcctgatcagtccacttgcttgaattctaaaacctcacttagcttttggaaacaaactctttaggtagaatgttaatacagga<br>gtctcttccctcgcaaagcaaaatcttgaaagagccacagacattttctcactgttaacagtggtagataggttgattatgtagtccataaattttacta<br>aatcatcagacacacttgacttttctctgtgacggcatagctttaagtaaatattaagaaggcatttgcatccattaaaacacagaatttaaaaagtaaa<br>aacacctcttcgagcccatggtaagttctacattttccagattctcagcattagcaaatattgtttatataatcaagaaactttctt<font color="green"><u>AAAAAAAATTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAAATTGTA</u></font>actaccactataagcaatcaagactaaacaaaaacattactgtatatcatatacaccttcttattgaaagtctaaaattc<br>tgctgcacataaaacacctaaaacaatttagaacatttgccatttctttctattctaagggaaataataggattaatgagatgttgatgagaaattgtct<br>tctctatgcaacactgctctctgcaaaaataccaaactatgtcaaacctgttcccaaaaggaagaggattaaattctacacctagaaaattaaattctca<br>agctacctaccacacagtctgtcaatttatataggttactataatcaagaaaccactgcttttggtctatgttttaaggatgaataattaatacacaaaa<br>agttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	179	NA	intergenic
0	chr6	20765379	20765686	1000229	0	-	3176;Ya5ACA1572; RIP_Alu_chr6_020_01	CGTGGGGAAACTAAAGGAGA	TAACTTGCATTTCCCATTGC	SINE	Alu	Ya5	tgataatttggccaatacagttataaagttacagaaatacagacaagacaacacatgctggcttctcttacaaagtcctttctggtattattccaaacca<br>aggtatagaatgaagtgatgtaaaaaaatcaactaaaagtcttatcatacaatgtttttgtttggggccataaagaaattagcctactcttatttttaag<br>aaaatgttatggtttgaaaaatgctatctaagagagagagaatgaataacaaggagttcatcctagaaataatgtatgtagatgtacagaatacaaataa<br>gtaaagctgcaatcctattgttaacgtggggaaactaaaggagatataaagaaaagaggatagcaaaacagataaactgagtgcattt<font color="green"><u>AAGAATGTAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAATGTAACC</u></font>attacctttgcaatgggaaatgcaagttaccaaactgtaatcaaatagtaaagttaactttactatactcataaacttaa<br>aacaaacaggctcattgaaaaaaactaaataaagtaataaatccctggctcctttactcactagaaggtagaagttatcatgtatttacttacaccgatg<br>agactggaaagtattcctaacatgtaaggcaatccacaaactttttcccactacattcagactatactaactgtatcagagattacatataatgagagga<br>tgcatacaagtgttctttcaaagcacatattaaaaatcaataaaaattattttattgaaatgcaactattgaaaaagcagatgtgcttttgtggtccaat<br>accctccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CDKAL1:NM:017774:7/16
0	chr6	157957857	157958149	1000230	0	-	Ya5ACA1579; RIP_Alu_chr6_157_01	GAACTGTTTTCTGGGCGCTA	TGGGATGTCAGTGTCTGTTTG	SINE	Alu	Ya5	aaaagaaattagctaatttagcaccggatactaaaatgatgagaagcctttacagaactctccctccaatcatatacatcagcaagagctgtttgatttt<br>ggatatgatgataaatacctatgcacaaactgccaaagcattgtacattagaggtacagaaattcattccaggtaataattagaaatgtagcactgccaa<br>aagattatatggaatttttttcagttcaaatagcaatctctttgaatctttagtaaaaattgtttttgtgcattgatgtttatacatgaaaaatggaact<br>gttttctgggcgctatattatctgagaccacacaatcagagtgcatccttcctctgctcagaactaaatatttgatattggtcatt<font color="green"><u>AAAAAGATAGATGG<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAAGA<br>TAGATGG</u></font>agggatagatagacagacagacaggcagacagatagatagatataaaatcattttagcatcaaacagacactgacatcccagaatcaatactg<br>tcattaattctatattcatgtttagagactggcttacaggttagaatttgacataatgctgattccttgaacaaaacccctaagactaaattaatttctt<br>aaacatttggataagaaacatggatttcattattgggtaattaggtcactctgttttccagaggacattctttgggagaagattaacttaaaaactaaac<br>aaaacaaaagaacaatattaacaagatatagcagagacattaaaaccaagtgccctttggaacaagaagtagagaatcttttcctgtatcaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	493	186	NA	intron:ZDHHC14:NM:024630:1/9
0	chr7	86717304	86717605	1000231	0	+	Ya5NBC22; RIP_Alu_chr7_086_01	TCTGTGTTCTTTGAATGTGTATTACTCTTA	GAATGTAAAGCTGTAACTTTCCTTTTCAAT	SINE	Alu	Ya5	atatctcttcaggaacctgatttcaattcttttggataaatacccagatctaggaatcttagatgatatggtagttccatttttaattatggggggaatc<br>tccatactgttttgcatagcatcatagcacctacaccagtttgcatttgcactaaccatgtgcaagcgttccagtttctccatatcctcctcaacacctg<br>ttatcttttgtgagattttttaaaataatgaccatactaatgggtatgaggcaatatctccttgtggttttgatttgcatttctctggtgattagtggca<br>ttaatattttttcatatatgtgttgttcatttgtctgtgttctttgaatgtgtattactcttaaatctgacaaattaatagaccttt<font color="green"><u>AAAAATTAAGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATTAAGGTC</u></font>ttccttcactaattttttttagtgcaggaatggtttttataacatagtgaatgttaacaattgaaaaggaaagttacagctttac<br>attcaaaaaaagaacttctttttttgctttcatgatttttagttgacacataataattgtacatatttttaggtacagtgtgatattttgatacatgtgt<br>ataacgcataatgatcaaatcagggtagttagcatatccatcactttaaacatttatcacttatttatgttgggaacattcaaaatctactcttctagct<br>atttgaaaatatacaataaattgtttataattatagccaatctattgtgcttcctcctatctagctggacttttgtatctgttaatcgacctttggctac<br>tc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	471	156	NA	intergenic
0	chr7	144046258	144046577	1000232	0	-	Ya5NBC35; RIP_Alu_chr7_143_01	GAGAAGTACTCAGAGAGGACATCATTT	GTAGTCATGGAGGTAAGAAAAGAAGACAC	SINE	Alu	Ya5	aaaacaggtagtgccgatcaaaccaggcaagctgaagcccatggctcctggacacaaatgatgacagctgtgactaaactcctaggcaaggctctttgat<br>gtgtctatctggccaataggcctctacatcttgaaagcaaagtagcaacattgagaaaaaaaagggccaggctgtgaaatgcaagttcaaagcaagcagc<br>aaagtattaatagttgagcttctttctgcaaataaaacacagagctctagaggcagcccctgcaaaatcaagagcagaactcctcaaggagtcctctcac<br>aaacagagaagtactcagagaggacatcattttattcacctccaacagtcaattcttcaaatctgacttgatcattttatcttc<font color="green"><u>AAAAAACAGTCAGCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTAAAAAAAAAAAATAAAAAA<br>AATAAATAAATAAATAAATA</font><font color="green"><u>AAAAAACAGTCAGCAC</u></font>aatactaaaatccattccctgtcttattttcccattgcccctgcattcgttcaaggtgtcttct<br>tttcttacctccatgactacaatatccatctaattgctacaacagctgattgccttccttgcccctccacttcactatccacaccagtccattctctcaa<br>ctgcccccagagcttttttttctaaatctaaccttagaatctgatctcatcatgaccttgcttgaaacccttccaaggaggcctatccccagaaggatga<br>agtccaaactcagtagcaggaatggcctacaaggcctttcatgatttggctgcccgactacccttccaacttcattctctgccatttcttcaccacatct<br>catgttaaacccacactatt	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	515	179	NA	intergenic
0	chr7	78357862	78358180	1000233	0	-	Ya5NBC96;55662;Ya5_451; RIP_Alu_chr7_078_01	GCCATCAAACACTCTTGACCT	GGAGCTATGCCACAGAAAGG	SINE	Alu	Ya5	tcttaactttaaaatgactgggagtaatcctcactttttttcttgttcttaacttgtatcccagtggtttggatattggcactaaaccaatgtgccttca<br>aattcagacattcctatttttaatcacaagatcttgagtgagtaaaatatctaacacattgtaaagacttaagtcatatgatcattatcatagatatagc<br>ctaataccattacaagtggctgatatccacatgattacaaaactctgcatctatagtatgccctcatttcttaccccttttcagtgagcagaagcctaag<br>aactagttgtaccctgtgagaaaatattaggagctatgccacagaaaggaagagtaagatgaatcattttttcagatat<font color="green"><u>AAAAAGATCAGAGAAAGATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCACTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGATCAGAGAAAGATGG</u></font>acataccaattttgaaatctttaattcaaactttgatggtactaggtcaagagtgtttga<br>tggctctatctcatctatgtgaatagaattcccagctagaatttgagttccatagagtaagaaccaatgtgcattttgtttactgctaattcatgcgggt<br>atagcatatgatagatcattttttaaaaagctttttaatgaaagggtgaatacctgatgacaaattcttaaaattgggctgtttatataataatctataa<br>tctaaaataaagatccttcttatttttctacgatttactttgtatttaatatctcagttatcatcacccactgttaccataacctcgcagggaatgaaca<br>tccttaatgcagattattc	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	509	169	NA	intron:MAGI2:NM:012301:2/22
0	chr7	43414121	43414413	1000234	0	+	Ya5NBC182; RIP_Alu_chr7_043_01	GAAGGACTATGTAGTTGCAGAAGC	AACCCAGTGGAAACAGAAGATG	SINE	Alu	Ya5	gtttcattctttgcattgaaataagttatcactcatttcatataaaaagtattctggggttcaaataaaaagaaacactacgaaaattcatagaggttgg<br>ctccttttgaaataaattcaatgtaaagaaattctagaaaattacacctgttctctacatgattcaagagaacattgtatctttgaaacttcctgagaga<br>gcaaagaatggtaagaaggacagtaaggagataatgggtccaaccttttgaccaacagtcacaggtatgtgacttagagaccacgggaaaaggaattact<br>gaattagaagacaaactaaaacaaaatcatccccaacccagtggaaacagaagatgaaaatagaactttttaaaacccagaaatctaatttatgaac<font color="green"><u>AAC<br></u></font><font color="red">AGATGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATGGCTTGAACCCGGGAGGCGGAGCTTGCAGTGAGC<br>CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAGAGAAATATAAT</font><font color="green"><u>AAC</u></font>cagt<br>gaaaaaaagatgaaaatattttttatctaaaaaaatacatacctaattaaaattgaaattcttcatatttcagatagctggaattgatataataaaatat<br>atatgtaggttcatagtagaaaatttgtagacacataaataagaaaaaacaataataatccaatacacagcaagcttctgcaactacatagtccttctta<br>ccattcattgctctaataaagttttaaaaataaaatgttcttttgaatcatgttaagaacattgtgaaatttcctaaaatttccttcagtttcttgcatt<br>gaatttactccaaaaggagccaaggggttcctggaggaagaatttttgaactgaagaatgctataaacaaacaggagaaactgtcggacgcct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	563	287	NA	intron:HECW1:NM:015052:6/30
0	chr7	96894748	96894973	1000235	0	+	Ya5ACA1727;Ya5NBC201; RIP_Alu_chr7_096_01	CGCCACTTTCCCCAGTTA	CACCTCCCTAAAAAGCAGGA	SINE	Alu	Ya5	ttgtgaaaaaatatttgtaatatatatgatggaaaaagaggttagtagacataatttacaaaaagctgctgtaaatcaatatgagaaagataacccaatg<br>gagaagtgaacaagtgctatgaaaaagcaattaatcataagagaaaacccagaggttaataaacatgagatgtttcacctccctaaaaagcaggaaaatg<br>caaattaaagtaatatacatgtatcacttcttgttcatcacaatggcaaaaattaacaagaatgagaacctagttctggcatttctttattcatgcattc<br>ttctatttaacacatatttattaagtgccttacatgagccaggcatgattccaggtgttgaggatacagcagtgaacaagagac<font color="green"><u>AAAAACCTCAGTCCTT<br></u></font><font color="red">GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACCTCAGTCCTT</u></font>atggagcttgcagttaactggggaaagtggcgaagaaggtactcatattgctaatgaa<br>aataggaagtgttatagccttttggaaaggaacttaatatttattaaaataaacacataatcagcttgaattctaacagtagacttgaagagatttccat<br>catgtatagctgagtgacaaaaagcaagactctggaatgtatatgattgattatcacatggaaaaaaaaaaaagcaatgacagtctcctccccaccacca<br>aagcataggtctacatttatatacatcattgatgttaaaaccaccatctaaggtgtgaaaacacatgcatgaaactgtttacattgatcaattgaggaga<br>agtggaatggggaagcaaaaatctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	460	218	NA	intergenic
0	chr7	83709879	83710187	1000236	0	-	pAlu7-83308024;Ya5NBC210; RIP_Alu_chr7_083_01	GAGGGGGTAGGGATAGCATT	GTGTTAATATTGTCCCCACATGTAA	SINE	Alu	Ya5	atagtgcctagacagctagaaaacataaatttgcccaatttttcttgcctatcatgcccccatcagtccattcttcaggttgggtcattcttctaaatat<br>ggatctatatctaggtctagctacatagataataaacatatattacatatatatgcaatgatctcatatatatatatgaatcatgtgcattctttcttca<br>acttatttaaacctcttgcattgttttaatttgaacaaatgtaacacaaattatgttggaatctatgtcataggttatagtaattaattatttttactat<br>tttcatatttttgtatgtgttaatattgtccccacatgtaaactttaaaagttcttaatcacagagattaaagtatatttttt<font color="green"><u>AAAGAATTATAAGCTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGAATTATAAGCTGC</u></font>aaattataaactgagtaagatattaatcaaaattgcaactactcaaaataatttataataaagatttagtatgt<br>tttctccaaatgaaaatataatttggaatgataaatgtccaataaatatgaatggtaattttaagcctacggtataattttttatttttttttaggtagt<br>ctctttttttcttgttattattatactttaagttttagggcacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctg<br>cacccattaactcatcattcagcattagggatatctcctaatgctatccctaccccctccccccaccccacaacagtccccagagtgtgatgttcccctt<br>ccgtgtcca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	62	750	424	NA	intron:SEMA3A:NM:006080:4/17
0	chr7	38508473	38508787	1000237	0	+	Ya5NBC216;4601;Ya5505; RIP_Alu_chr7_038_01	GATGTGACCCTGGCTTGTAAA	CAGAGTCCCTGTGCAAAATG	SINE	Alu	Ya5	ttgtcaaatcaattattatcctgagaaaatggtatagtatcagaaatatcttatttagaataactaaacatctatttctaatattttgttttttaattta<br>gaaattaactagcatgtatttaattaggataaagtgtccaacatttttgatacaactgatagtgattttctccaatttatgaagtcagagatcctgcaaa<br>gaggggaatgcctttaactagttcactattacagccctagcacctagtacacggcaagcatgagtaaatgaataaattccataaatgaacaaacaagcca<br>gtgaatgaagaaacttggcactcattccactataagagcatattccgatgtgaccctggcttgtaaaaacttaatgtaaccagcagt<font color="green"><u>AGAACATACAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AGAACATACAGAC</u></font>acagagtaccagcataccaggctcttgattctgatattatctgcttaaaagtttcattttgcacagggactc<br>tgagacatcaccatttccccaaatgtggcatcctcaggacacttcttattagctgtcaaaaccaacttaatttctttattaagatgtttctttgttctca<br>gaaataaaggaaaaattaagttgagcttatcacagctacagattgcagacctgagcactctccccttcgcaatgccctaaggaaatctgcctccctggag<br>gggagtgtcagtgcttcctgcagaccctcttgcagtggaggaggcaacccttgctgtccttcacttactatggagatggagtatgaggaagagttttttc<br>ctagctctcttctga	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	456	141	NA	intron:AMPH:NM:001635:7/21
0	chr7	127620166	127620472	1000238	0	-	Ya5NBC354;239207; RIP_Alu_chr7_127_01	GTAGCTTGGCCTGTGCTCTT	CCTCTGGGCTGAGAAACTCTT	SINE	Alu	Ya5	gatcttgcaagtctccacttccatgaggtattctggcacacacctggcagccaaatgtaaaagctacttacttgcataaatttagagtgactttttctag<br>accaagctgttttatttgaacaaaatggttctgagatgtgtggagtgtacttctaaactattgccttttttgagctttcactcaaataaaattgctctga<br>gctcctcctcctgaggcaagtgaattccaaatgtctagagattagtatacttagcctacagtaggatgaggaggaaaaaccagctagtgtcaggaatatt<br>aagacttaagaaccaaagagcatgaataaaaaaaacctctgggctgagaaactcttagcaagagtccttcacctcactaactttacttt<font color="green"><u>AAAGAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAAAAGA</u></font>ataaaataaaataaaataaagcaagcaaaaagggaaaggaattgtgaaaagtcaaggttctccaagagcacaggccaagcta<br>catatatcctatcctgagtagcttgaatcctgggccagctgtgggtcaagaatggcatttgccttattcatctatttattttttagttaccatactctaa<br>agcagggaacaacagacaacttcctgaagactaagtctgcccactgattttacagagctcatgagctaagaatgatttttacatttttgaatggttaaga<br>caaaaatcagaagaagaatatttgtgacatgttataggatataataaattcctcttcaaaggttttagcctgtaaattgttaagtacaatgagttctgag<br>gtccttt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	466	148	NA	intron:SND1:NM:014390:15/24
0	chr7	12024245	12024499	1000239	0	+	Ya5NBC361; RIP_Alu_chr7_011_01	AATATTTTCTCCCATTCTTTTGG	TGTTAAAAGCGCAAGTCACAA	SINE	Alu	Ya5	caaaacaatgggcaaaactgagagtacagaaataagctgttatactaaaggtcaattaattttcaaaaatgggtctaagatatttaatggggggagataa<br>agctttttaagaaatggtactaagacaataatatcttcatacaaaagaatgaaattagaatccttcatactataaaggaaaattaactccatatgaatca<br>tagacctaaatgtgaaaggtaaaactataaaaattcttagaagccacagaggagtacattttatcctttaattagtaatggtctgttagctaggatgtta<br>aaagcgcaagtcacaaaagaaaaaagtgaattggacattatcaaaattaaaaagaaaaaactttttgtatttcaaaggataccatc<font color="green"><u>AAGAAAGTGAAGAC<br></u></font><font color="red">GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCG<br>GGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCG<br>CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTGAAGAC</u></font>aacccaaa<br>agaatgggagaaaatatttgtgatcatatatttaataggggacttgtgtctagaattaataaagaactgtcaacttcaacaaaaagaaaaatagcccagt<br>ttaaaaataggcaaaagatttctcaaagaatatctattaatgatcaatagacacacagaaagatacttaatataatttatcatttgggaaatataaatca<br>aaatcacaatgagatatcataccacttcatattcactagggtggctaaaatcaaaaggcagacaataagaagtgttgatgagcatgtggagaagctgaaa<br>tcctcataaattgctgatgaggttctaaaatggtacagacacttagaaatttggcagttcaccaaaatattaaacatg	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	423	131	NA	intergenic
0	chr7	39592071	39592371	1000240	0	-	33173;Ya5495; RIP_Alu_chr7_039_02	GCCTTAGTGTGGCCCAAGT	CAGCCCCAAACCTTGACTTA	SINE	Alu	Ya5	agggggaggaggagggagtctggggctgtgtagtgttttctgataccacttctgacaccaaatgcgtgtctattattgacaccgaatatttttcacacca<br>attctctgacaccaactgggtgtccaatagttcagttcaattctgacactatctacctggagttagtgtcagatcccacaagttaaagggctcagtccca<br>aaagactgcccctatttcagctgctagccaccagtgtggtccccagtgaaccacacttctgtctaactgacaacaaagttggggattcctatgatcctca<br>cccttgccttagtgtggcccaagttaactagataatttgttagaatgaactcaagaaaatactctacttactattacagtttattat<font color="green"><u>AAAGGATACAACT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGGATACAACT</u></font>tagggccaggtggaagagatccctaagtcaaggtttggggctggagggtacagagcttccacatcctttccaggtactaccctccc<br>agcacacctgtgtgctcaccaacctggaagatcctcaaatcttgtcatttagtggtttttgtggaagtttcattgccaatgcataggcatgattgattaa<br>atcatttgccatgggtgatcgaactcaatctccagccttcctccactccccagaatgaggtgggggagggagactgaaatttctaaccctccattcatgt<br>ggctggtttttctggtgaccagctttcagtgagtcagctcatgagtatatgaaagacaataaatttcagggatttttggagttctatgccaggaacaggg<br>t	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	452	138	NA	intergenic
0	chr7	136851626	136851924	1000241	0	+	Ya5524;Ya5NBC242;Ya5ACA1650; RIP_Alu_chr7_136_01	GGCAATCTGACCTTGGGTAA	GGCTATTCAAGTGGCCAAGA	SINE	Alu	Ya5	tggtaatgtaattgtttgaaggtgtgtgtctattttcattagactcagagactcagaggcgggtcacctgcttgtctcttggttgtgcaacttcctcatt<br>gaaattactggtcataaatattgtcatatatatcctcaaacctccaactaacagcagaaatcccctgcaagctcttaactgagacacctttgaatagctt<br>cagtggctattcaagtggccaagagctcattacctatacagataatttgggtgatttaatagattaactcaactactcaattgggtaattcaaattatta<br>caatatactaaacaaaattccctttcctccagtggttttatcacacaaagctaaacggaatatatctactttgcagtgtctctttaaa<font color="green"><u>ATCTAACTTCTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>TCTAACTTCTG</u></font>ctagcatatatcctctttgtcatcattattataaacaatttacagatgcagaaactgaggctgaaaaacattaaacaccttacccaagg<br>tcagattgccaaggttaatggctattctgggacttaaactcagatctcttttatttcataatttatgaacataaacactatgctgtcctgaaaataacta<br>cattttctttaaaagcatctttttataagtggcttctacagcactataaatctcaaaattctttctccatataccatttaatttgtcagtttctttctca<br>aaatgtggccctgaaattaacaaaatgttgtcagttaaagacggagttcagggggattatcaccaaatttggtttggaccccagaagtctatcttagta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	605	310	NA	intergenic
0	chr7	135189216	135189533	1000242	0	-	Ya5ACA1592; RIP_Alu_chr7_134_01	ATTGGCTTGTGGATATGCCT	AAGAAATGCTCCACCCCTTT	SINE	Alu	Ya5	tgatgtattgctattaggataagtcttgctatttgtataggtgtgtatgtcagataactgttcaaaaacaacttttttaaagtatggctactaaaatctc<br>acctcttgagttttaaagcaattatggagtagaatttgaaatcaaaataatcaaaattggcttgtggatatgcctaaaaccagtttggaaaaaaggtcaa<br>ggcaaaaaagcagtgtaattagaagaataaaatgctttcccttaaaaatagtagatgtgaccgggcacggtggctcacgcctgtaatcccagcactttgg<br>gaggccgaggtgggcagatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatac<font color="green"><u>AAAAATTAGCCGGATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGATCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTAGCCGGATG</u></font>tggtggcacgtgcctgtaattccagctactcgggaggctgaggcaggagaatcatttgaacttggg<br>agtcagaggttgcagtgatctgagattgcgccattgcactctagcctgggtgacagagtgagactttgtctccaaaaaaaaaaaaaaaaattagtagatc<br>ttatattactgcttttggaagcaattagtgaatgatgtaggcaaaatagtgattgaattttgaaaagcaattagactgaaatttcaaaggggtggagcat<br>ttcttaatagcaacaaacagatacatggtcattaatccaaatatctgaaattttctgagcatgtttttcagagtttggaatagagtggaagtgctaattt<br>tctgattatttaagaacc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	850	516	NA	intron:CNOT4:NM:013316:1/11
0	chr7	113953519	113953813	1000243	0	+	238237;Ya5ACA1611; RIP_Alu_chr7_113_01	TTTTGGTAAAGATGCCACAGAA	TCCTAAACATAATACGTACAGGTGA	SINE	Alu	Ya5	ctgaacatcttcatggtgcaatcacatagagtccagaaattctctgaaaataaggaaagtttctagactcactacatgcatcattcagggaaataaaaat<br>atggggttacattctgtgtctgaaagtttccaagctaaaagacaccactatgaacataagtttatagaataacatagctttggctcttctgtgatgaatt<br>atttggctcagtggtaacaatttacacatgacttttaggacattaatctaaaagatacttccactgattatttggaacatctttctggagaagacagtct<br>ctaaaatggagaatttttggtaaagatgccacagaatataatcttacatttccattttactaaattgttaatctattaaaggt<font color="green"><u>AAAACAAAAATATTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAC<br>AAAAATATTGTC</u></font>attatttgaaattgtataattttgtataatgttaaaaataactacaagaaaggatatataattctaacacatatcacctgtacgtatt<br>atgtttaggataattataatccaacattttatcttgagtctagttgtaactgatcaatattttttcaaactgaaagtctggctccattagtggtttatac<br>attaatttagtggattgcaaccagcatatttaaaaatgtaatgtaatagaataaatagaacagaacagaaagcagaaccaaaaagaatagaaaagaacag<br>aataaaatggaaaatacatgctattatggattaatatcctgtgaaacttttatgtacgtgtatttgagttctcagtgctaattacatttttttct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	184	NA	intergenic
0	chr7	120881116	120881434	1000244	0	+	pAlu7-120421716;Ya5ACA1622; RIP_Alu_chr7_120_01	CATGCTTGCCAGAACAGAAT	GATGCTGGTTTTTGAATGGC	SINE	Alu	Ya5	aaattgaagactcagaggcctcagttctgggcctgccctgtcattaacagcatgatcccacttctgttatttaactctttgggcctcagattgcctcttc<br>tgttaaaaaaaaaaaaaaagtgacggggaagggagggagaaaggacacactctaaggcctcttctgactccatccaacgtgatgctacacagccactcaa<br>tgtgaacctctgtgaaggaaagactaccatttatctaaggaggtttgcttgagaaatacatcaacaaagattaaactttaggctgtgtctatatcaaaga<br>tgtggaggaggttggttattaatgacaaaccatgcttgccagaacagaattagaattagaaagcaagatatattctgaatg<font color="green"><u>AAAAAGAAATTATAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAATTATAAAACA</u></font>gaattggatggaaaaataagcacttttgaggaagataatctttattttgccattcaaaaacc<br>agcatctctcctaaattttctgttgtttcttttagcagtacggccattctctacaaccagaaactttagaaacatctttcacatagcagaccctcgtttt<br>ctccaagatatgcagtcagttcttctggctcactcctgtcaggcccatctcttcactgtacctaaagtaccactccttccaggtcttcaaatcttatctg<br>tccctaaaggcctgttcacatattatctgcttcatggacccttccagaaaactctgacctccatgactctttctctatttggaacaattgtggctcactg<br>agagtagaggtgggaaaat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	476	158	NA	intron:C7orf58:NM:001105533:16/18
0	chr7	24677943	24678248	1000245	0	-	Ya5ACA1648;pAlu7-24386109;238947; RIP_Alu_chr7_024_01	GCCTCACAGTTTGGTTCTATGG	GGACCTGCATTTGCTTTCTT	SINE	Alu	Ya5	accactcgtccctttgactttcactcctttgctctaagtaagagctatgaagaccatttatttcttcaggaaaatgttatatgatcagcaacagtacttt<br>agacaacagtagtccttggtttaattcaggactttaggagaagtaaaggaacagaaatgatcaatgacttgaaaactccattccttagtatgtgtattaa<br>cctaatgcttccaaattgggtgaggagaagtaggaatgtggaaagactaatggcaaggggttgggggtcaggggagagtcatgtgagaaggcagaatcat<br>gttagaaaaagaacccaagcacatctgaagattttttcatatcagcctcacagtttggttctatggaagaagagaatctcact<font color="green"><u>AGAAAATACAGAAATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAATACAGAAATTG</u></font>aagggagaaaaaaaggtttttttagaaactgtagctataaatatattaacatggaaaaccaacatacttggattcaa<br>ctgggatcaattttactttttctaagaaagcaaatgcaggtccacatttattaacatatagctttttaagctctgagatgttgtcaaaaacttggaacct<br>ctaattcactttaaggtcagattttttttattagctttcaagaggcaagtaccaacttaaatttaactaatcaaactaaaaaagacaaaggaaacacaca<br>caaaaaataaccagaggagcaagtgagccacatactatttaaataaataaatcttgttttctttttttaaattaaagagcactattgcaacactagcata<br>actcaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	176	NA	intron:MPP6:NM:016447:3/13
0	chr7	27514350	27514610	1000246	0	+	Ya5ACA1672; RIP_Alu_chr7_027_01	GCACATGTAATGGGGCTTTT	GGGCACTGTACAAAATGCAA	SINE	Alu	Ya5	caaaacagtgctgaaattctctcacaaactcatctttacactcttccaaaatgctgaatcggtcaccagagcttccactattacttcacctaatgaccgg<br>cttagaagcccaacacctggtaggtactcaacaagtaaatggatgagttggtgaattaagttttaaaattaccttcatttgctacacatttagataagat<br>tctggagccattctcctcttaggagtcagtcgcacattatttctcgggatgagttatctcctgggaagatttccaaagaatcattcattagatcactttt<br>cacttatttactcactattcatctaacaaacatttcctgagggcctactacatacaaggctcaacagcacatgtaatggggctttt<font color="green"><u>AAAAAATTACATAT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATTGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTACATAT</u></font>ataaatatacaaagaaaaaaaggca<br>tatcaaaataaagaacaaaagatataccaaaatgttaacagtggtgggatcattcatcatttttcttccttctttttgcttatttgcattttgtacagtg<br>cccatgtcttgtttatttaaagtgttctaaagcattcaagatgcatcttgccctcaaaaaacatggatagagtgagtgggcaggaaatgggacaagacaa<br>gctgaaaaatgacaactctgacacaagtgcagaccgtgatcatttccctaagaggcttaaatgctgtcagggttaagaggaaattgcgatgaccttgaca<br>gatgagagaccaggtcacagaggtaccatccttgaagcacaggagggtttctccagggagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	437	162	NA	intergenic
0	chr7	76567225	76567226	1000247	0	+	Ya5ACA1693; RIP_Alu_chr7_076_01	CTCAAAGCTCAGAGGAGGGA	ATCCTACTCTGCTCCAGCCA	SINE	Alu	Ya5	tcaccaggaagtcttcctgtgtttaccctaaacataattcagagaccaattactcctcaccgcctccatggctatcactttcgtcagacttgctacattt<br>tagcaatcgtcttataactgttttcctattcccacccttgcctccttccattctattgcccacaaagaaacataagtgatccttttgaaacataagtcag<br>atcacggcatttctttcccaaaaagaaatgcaagtgtctaaattcttcgcctacctcagggtaaaagtccaagttcttatatggcctttaaagacctctg<br>tgtactctcctcctccctccattagttctctgatcttcccttcttcttttcttcctcatcctactctgctccagccacgcagtctttc<font color="green"><u>TGGCTATTTCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGGCTATTTCTT</u></font>gaacatagtaaacatgatccctcctctgagctttgagttgtttcctttgcctgggaaattccatctggagacttccgg<br>gcttgctcacctatataggcaagtctgtacatgagacctgctctgaccactcaatttaaaatggcagcaaaatccttcctggcaccccacctttaaaatg<br>gcaacaaaagccttcctggcacctttcctttctagctttggacctattacataatctatgtatcttttgtgttatcatctgccttccccgccagtatgta<br>aactccacaaaggttgagatttttgtttggttcactgatgtatcccaaggacacagttcagtatctaacttgcagtggaaactcaccaagtatttatcaa<br>attatttgat	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	396	80	NA	intergenic
0	chr8	61204998	61205303	1000248	0	-	Ya5ACA1766; RIP_Alu_chr8_061_01	CATCATGGTATCCCAAGCCT	TTCTTCTGGGCAGTCTGTCA	SINE	Alu	Ya5	tttgcataattatttacaacgttcaggaaacctcatatatattgacttttatttgtttgacagttgtgagttgatgagagtgctaatgtcttagtgaatg<br>aatgtggatgaaacaacatgtgtgtgcagttctcagaataaaggcacacgaggttgttttttgatttacagtcagggcttctgtatatcaggcttccttg<br>ttgatggctctgtgtgaaacccaaaagccccccatctataggacattttccaatggttatatgatttctaaagcctgtttctcatggttataacattgaa<br>gaattttgagtgtgggtatactattttcaaagttctatgttccttgagcacaaagaccaattctagtcatcatggtatcccaagccttt<font color="green"><u>AGGACAGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGGACAGTGTC</u></font>ttccagagtacctaatcaataaatatcacctggatgaatggatgtatgattgagcatgctgaagtcagtaaagcttaggtaga<br>gcagtgtcgttatagtattgacagactgcccagaagaaccccaggacttaagtgtttgtattctcattgtgtccttcaatgtgcagaaagctcatatctc<br>aaaagatcttctggccttcttcctatgacctcagctccatgatggacccgctgattacctctgtcactcttgaaatgtaaatatcatctcctatttatgt<br>gatcatgggttaaggaggcttagagataactagtcccaaatgcatgtgggtgtctaaaaccagactatcttgatgtcaagtacctagagctactgctgat<br>taccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	471	154	NA	intergenic
0	chr9	35803109	35803399	1000249	0	-	Ya5NBC240;Ya5ACA1878;238279; RIP_Alu_chr9_035_01	AAGGGCAGACATGCCAAATA	TCAGGTCTCTTTCCATCATCTCT	SINE	Alu	Ya5	aataacttcatgagaattcagcagaaaaccaaagctagtttcagatacagtgtggggtgatccactgggatgctcattggctatgagacttatttcagaa<br>aacctgtccaactcatgcaagattctattttatgctccacaaatccatgggcctctgagtcatttgaacatagctaaaacctagtataacagaagagtac<br>caaaggtttttagtacaatcttccttggtttctcttagttctactagtaaatgttccttttttaaatttcagttttctgaacaaaagggcagacatgcca<br>aatattggtcagagagtaaaataatgagaggaaaaacaggagataaatatgttcggagagtaaaataatgagaggaaaaacaagagat<font color="green"><u>AAATATGTTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAATATGTT<br>CAG</u></font>agactccactcattttatgagttcttagaggtaaaagagatgatggaaagagacctgagatatttaagacagaaagatagaaactctctacaggcac<br>aggactccttgtggcaggtaaaactcactgtcccagttataagccccagactccttgtttacccattattaccagaccatgggaataaggggagatgaga<br>gaacaggacttcagaggactagaaggagaaaaaccacaatcaaagaacagtggaagtgatttaaagtggatgaacttttaaggagtggggaagactcacc<br>ttaacaaggtcattaatgagtgaataacgaaacatccagtccaagttgatgctgtcattttctagaatatcctggtaagtgacatggaata	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	505	202	NA	intron:NPR2:NM:003995:12/22
0	chr1	241360554	241360852	1000250	0	-	pAlu1-237657038;Ya5ACA614; RIP_Alu_chr1_237_01	TGGTGCTTCTTGCTATACCATC	CAAACATTTTCAGGCTGGATT	SINE	Alu	Ya5	atagatagatagataatgtttaattttggtaaattatgcatttgggaagaatattattatacagtagtaatgttttgaatatttcaactagatcaagttt<br>gcaatctttttttttttttttggtcttttatctctttactgattgtttttttctgcctggtccatcagttaataagtatatgtatggaaatctctcacta<br>caattttgaatttttatatatctccttttacttctaataatttacctttgtatattctgacactatttattaactgtgcacaagttttaaaatgtgtctt<br>cctcatggattgactgttctatcattatggaaagtgatctttatctctagtggtgcttcttgctataccatctactttgagatt<font color="green"><u>AAGATACTTTGATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATACTTTGATTAG</u></font>tatttttatggtatatatattttctatttttagtttcaacttttttatattcttatatttaaggtgagtctcttgtgtcatataa<br>ttattttttaaatccagcctgaaaatgtttgttatttaattggagtgtttagtccatttacatttaatgttattgatatattaagtttaaaatctagaac<br>tttacatttattttctaattaacccagcatattccttatttgttcttttttttttttttttacattcttttggatggattcagtattatttatttttccc<br>tttctccccagtactagctggtcagatacacattcttttaccattgtattagtgcttaccctagcttatgaaatataatacatccctgaaattcaagtc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	481	166	NA	intron:RGS7:NM:002924:2/18
0	chr1	239426268	239426269	1000251	0	+	Ya5ACA630;14975; RIP_Alu_chr1_235_01	CCAGTCTGCTAAGACAGTTTTGAA	AGCGGGTACAGTAGGCAGAA	SINE	Alu	Ya5	accagtacacatgaattatcttacagttttcatgggataggagtgcagataagagttagctggtttctctgttcaaggtctcaaccaggtttaaatcaag<br>gtggggctgagctgtgttcttacctgggacttaagagtcctcttccaaatcactgattgttgacaggattcagttccctcaagctggagagctgtgtttc<br>ctgttttcttgctggctgttggccagggatcatcaacttcaactcctagaagccagcctcaggtcctaaccacattttctcctcctcttgcaaaatggca<br>gcttaggttttcaaggacagtaagagaatacctttcatttcgaatctctctctctatccagtctgctaagacagttttgaattactt<font color="green"><u>AAGAAGGAATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGGAATTGG</u></font>ctgtcccatcatgttcaaatgtctcacccatgttgaaggagagggaataatacagagtgtgcacatcaggggccagg<br>aatcttaggggttatatttttctgcctactgtacccgctcactaaaatcttttctagcgaaaagggagaatgttttcacaaacagctatgataccaaatc<br>taatcccactattattatatactcccaacattttcaaaaaaaaaaatctgagtattaggactaaatacttagaatgtattaaaatatatactaaatgtaa<br>gatagtaagttttgtttaaagttgaggctcatgtttataattcgttgcctttttcttcaacagaacatttaaaatctcctgtatatttcatggaattgca<br>aatatgatgc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	498	159	NA	intergenic
0	chr1	77764995	77764996	1000252	0	+	Ya5ACA641; RIP_Alu_chr1_077_01	CCAACTCCAGGCTTCTTTCA	TTGTTCTCCTTTGCCCATTT	SINE	Alu	Ya5	tccatcaataccctcccattccgctgctcctcctttcctgagaaataggagtactgttaggtttgttatatattcttccagacctttttctatacttaca<br>tgcatacatacatgtatggacacatgtgcacatgctcatatacaaatgcattctaaatttttataatgacttttccaagttatatcaatgttgaatgaca<br>gtatctttttctacagaccctttccaaccagatacgattcatgtttaaaatttttgcaaacctgatgagtaaatggcattttgtgttttaaatttgcatt<br>tcatgggttactattaaggttaagtatattttcatacactcattggccatgtgtatttcttccttatgtgaattgcttgttctcctt<font color="green"><u>TGCCCATTTTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGCCCATTTTTCT</u></font>acagactttttaatctttttcttatttatttcaaggagcatttaacatattacagatatcgtattaaacagtattaa<br>gtaaaatatgatgtcagtttatgcatcacatgaaagaagcctggagttgggcagttcacggccaggggtagctttacaaaacatttttttgaatgttccc<br>attaacggttttggatcacctattgtgctagaatgtctgcctccccttcttaggtttcctctcccaccataagtccagaaactctggtgctcagtcagct<br>taaaggcttggttctaattgttctggctttgaagagagaaaaactggaaaatatctgatgaagttttgttattgctgttgctaccacattatattgctgt<br>tgaaagcggg	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	151	NA	intron:AK5:NM:174858:5/14
0	chr1	89115733	89115734	1000253	0	+	Ya5ACA659; RIP_Alu_chr1_088_01	TCTGTGCAAAGCAGAGGGAT	AACAATGCCTAGCACAGGGT	SINE	Alu	Ya5	ttctaattcactttaaatggagtttacattggaaaaaaataaagacagtggagcatttgatcccatgcatcaaaaagcacttactgagcaccttggtaat<br>acaggttatatctgcatgcctcaatttctagcatgcttacataaattacctcatatgtgagctaagtaggcagataatcaatgagttattgtctgtgaaa<br>cactttaactgaatatacaatgtaaacattaagaaaaaatttctattttacacataagcaaatggggtctcaaagaagtggagagacctgcctaatctga<br>caggccaggtgtcctgactaccataaagctttgcatcacactgctttcctgtgagtctcctctgtgcaaagcagagggatatgtt<font color="green"><u>GAAACCTCTGATTTG<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAACCTCTGATTTG</u></font>aaagggtttacaaatcagttatagacaaatgacatacacataaaagaataacatgatgataatagtgaagatggt<br>gatgatagttgacacttttatggtacttaccctgtgctaggcattgttatacatgaagtgacccatttaaatctcttagcaatctttcaaaataggcatc<br>atgagataattaaggcacagagagatttagttacttgcctgaagttaccgggatagtgtgtggtaggattgaaatcatttgaagtcagctgcctggctcc<br>agggactatgtttgactactatactctactgcctttctataaaacagtatatggaatacattctatattcatgatctaattagtgtgttagaatgtcagg<br>gagatttata	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	478	163	NA	intergenic
0	chr1	150691452	150691770	1000254	0	+	Ya5ACA702;pAlu1-147466446; RIP_Alu_chr1_147_01	AATGCAATGCAGCAAACATC	CAGTTGCAGAGGACTCCCAT	SINE	Alu	Ya5	aaaatcctatacaaatatagcaaatgcatatttgtgtctcggttacaaacattcattttctttctttttgagacggagtctcactgttacccaggctgga<br>gtgcagtggtgtgatctcgactcactgcaacctcccccttctgagttcaagcgattctcctgcctcagccaccttcatagctgagactacaggcgtgagc<br>caccgtgcccggcctcattttcttatttatttaattttattctgcttatatattgaacattcatgttctagaggtggactgctatgaacaataatttcat<br>caaagcaacaaagcagtattcattaatacctaatgtaaattaaatgtgaatgagcaatttaatgcaatgcagcaaacatccaata<font color="green"><u>GAATTCTCAATTAAT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATTCTCAATTAAT</u></font>tcaaaatacttcagcaaatatcttcatttcttaaaacatgcagtttcctggtatcataaaaccctc<br>aaatagttgagccctaacttccaacagagtatttgagacttcaagaaacaataaaagcagctattattaagatataccaaaatacaagaaatcataccat<br>gggagtcctctgcaactgggcagtggccatcttcttctgataaagtattttctttaattcaaccttgtgacacaaatacaagctttaacttagagctcat<br>ttttttcctctaacatttcagtttaccacatataaaattcaaaacaattttatgtgaataaatttgaatttctttaattaaaatagagtcttcaaaaacg<br>tagaggtcgatattgcagt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	558	224	NA	intron:HORMAD1:NM:032132:2/15
0	chr1	162052681	162052985	1000255	0	-	pAlu1-158748606;52678;Ya5ACA728; RIP_Alu_chr1_158_01	ACACGAGTGCTTCTTCCCAC	CATTCCCAGAGATGTTGCCT	SINE	Alu	Ya5	tttaacctgggctgccaaatttaagaaatctagccacattaaagagccaatttgaggccaggcacagtggctcacacctgtaatcctagcactttgggag<br>gccagggcaggaggattgcttgagcccaggagtttgagaccagactgggcaatatagtgagaccctgtctccaaataaaaaaattgccaatttgaaaatg<br>tagttacagtggaggctatgtgtgtttatggaaaatagcatggactcaagataatatgttatctgtcacttggcccacaggagacatgaatcttcctctc<br>cgcagaacaataaaatgcttctacacgagtgcttcttcccacccaaagaaaccaaaagaaaaagcaaagagtttacagtcaagat<font color="green"><u>AGAAAAAAAGGACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAAAAAAGGACAC</u></font>aaccaaggagcttttccattgtgcgtggtggactgagatttccaatccaaaaggcaacatctctgggaatgaccttttca<br>gcgttttgtactctaccagaggcaccatggggcctctgggtggagagaacttgtcctcaaaaatagaggtgggccaataaacatatgcaaaaaaagctca<br>acatcactgatcattacagaaatgcaaatcaaaaccacaatgagataccatctaacaccagtcaaaaggggtattactaaaaagtcaaaaaataacagat<br>gttggcaaggttgtaaagaaaaaggaacccttatagactgttggtgggagtataaattagttcagccattgtggaaaacagtgtggcaattcctcaaaga<br>cctaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	469	149	NA	intron:NOS1AP:NM:001164757:1/10
0	chr1	210295321	210295622	1000256	0	-	15439;Ya5ACA759;pAlu1-206934322; RIP_Alu_chr1_206_01	CCCACAATAAACATGTGGCA	CAAGCAGCTTAAACCAGGCT	SINE	Alu	Ya5	gtctgtttttttgtacagccagcatgctaagaaaggttttacatttttaaaaagaattgtaaaaaaaaaaaatgcgacagagaccatatgtggaacctaa<br>aaaaaaaaaaatgaactctctggcactttacagaaaaagtttgccaacccctgctttagacaatgaaatgtaaatggaagtggcatgtgtcaattttggg<br>caaaagctttaaaagacaaggattagttttctatgctctctgccatgacaaccaagaaagtttcagaaagaacctgcccaatcagtctggatcttacagt<br>gaagaaaacatggaatagagccataattgacccacaataaacatgtggcataagtaagaaataaacctttgttgtgggcattt<font color="green"><u>AAAAGTTTCAGGATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGTTTCAGGATTTG</u></font>ttacttcagaatagcctggtttaagctgcttgatatgtatcaatgtaatatgagttactacgcatgcctgaaaataataaa<br>agtgcatttatttaaagaatatttataattcagtcatcttaataattactcagaatatatttctttcttcttttttttttttttgaaatggggtctcgct<br>ctgtcgcccaggctagagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctg<br>ggactacaggcgcccgccaccacgcctggctaattttttgtatttttagtagagacagagtttcaccatgttagccaggatggtctcaatctcctgacct<br>tg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	421	101	NA	intron:SYT14:NM:153262:6/8
0	chr1	218785931	218786233	1000257	0	-	Ya5ACA769; RIP_Alu_chr1_215_01	CCTGTCATTGATGAGTTTGAGG	GCATTTAAAGACCGCAAAGG	SINE	Alu	Ya5	tgcccaacaatataattgtctcaggaggcacaagtgactggaaaacacaagatcatacacagcacctccttcctaatcaaacactacagaatagtaagct<br>taagctcatataaacctttgcaaattttcaaaaaattctatactccatgatgctgactcaatacaatgttttcgtgactttgttttaaaaatgatagggt<br>atcagctttgtattaggtgaaatatacctgccaggtatatatgttaggtaaatacacctgtcattgatgagtttgaggaatgaaaaacacagatccttgc<br>taaacaatgtgaagagttctgtaactgagatatgaataggggattataagagtgaaagaagatagccaaagaaaattatctgg<font color="green"><u>AAGAAACAAAGCTTTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAAACAAAGCTTTTG</u></font>cctttgcggtctttaaatgccttgctccaaatactgtgtgttgcttgctgaaaaaaaaaaaaaaaaaaaaaaaaaatcag<br>tccaattcagtctttaccaagctattttcttttttttttctttaactatattgagtcagaccatgacacaccccactggccctatgctcaatgccttcct<br>gggtccatccactcacccatgtcccagaccaaactgtgccctggcacagaaacctgagtctttcaaccaacacttcatataacatgcaacattcacctag<br>gagtttagtaagaggggatcaccttagccagacaaccagaattgtggctgtgactggaaggaggaggagagaaacaggaagaggaaaaaggtggaggaga<br>tgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	164	NA	intergenic
0	chr2	206731200	206731505	1000258	0	+	Ya5499;9131;pAlu2-206695121; RIP_Alu_chr2_206_01	TCCACCAATTTGAGCTGTCA	GCTGAGCTGGACTTGGATGT	SINE	Alu	Ya5	catctcttctgaatggtcagttcaattaccacactgatggttaaatgtttttaccaacacccctgggattataaagattaggagggagaaatatgccaac<br>agtactggaaatggtcatgccacccgtcctgtcattgttaaaaaatcattttgcctttgattctgggaagcacacgcctgggaatactccccaggcctct<br>cacttgaccccaatagaactgtcccttttatgccaccaaatgagcttcgtgattagtcatgcctgtttcagctggctaagtgcccaagcagtgcctgagg<br>ctggtccaagtgtttcttccaccaatttgagctgtcaaatccactcattttcctaggttagtagtggcagtacagtcatcctc<font color="green"><u>AAAAGAGACATTTCCTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGAGACATTTCCTG</u></font>agggccaaggctcacgtgttccctagaatcacatccaagtccagctcagcctggtgtgatgtaggctggaaccatga<br>ttaggaattcagagaagcaaatccagctgctccacacttggaccattccactcctgacgcttgttccaagttatagctgacaggctgcctatgttttcct<br>aggttccccatccacagatttagataagagagaggtgttcttgctgtagtcattgactttataatttgggagttttcatataattgggggtttaggtttt<br>tttcatggttcaagctggtcccatattttacatccctctctctccctattagggctcaggatgctgaattgtgattttgcatttgcacatttgtatcctc<br>cactgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	456	133	NA	intergenic
0	chr2	208567225	208567530	1000259	0	-	Ya5ACA784; RIP_Alu_chr2_208_01	GAAAGTCCCTCAGGAAACCC	GGGCATACCTTGCTTCAAAA	SINE	Alu	Ya5	cactgcaacctctacctcctgggttcaagcgattctcctgcctcagcttcccaagtagctgggacaacaggcatgtgacaccacgccaggctaatttttt<br>ggtatttttttgtagagacagggtttcaccatattggtcaggctggtcttgtactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgg<br>gattacaggaatgagccacggcacgggcctatcattgctacatttaactagcaattaccatgtgaatgtgtactgggtattgctttacatgattaactaa<br>tacccacaaaaatcccaggatatgtaatatgaaagtccctcaggaaaccctccaccaagaccaaagacctgcctaactccatcacataagaatttccct<font color="green"><u>T<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>T</u></font>ggatggaatgagcagactgtgtgctatggcctgtttttgaagcaaggtatgcccaggtctgggtgcccttccccagaagtatcaggggaggag<br>tctgcaacatctgtaaactctgcttagtcctcttttgggtagaaatcatactcttctggcattttatgtttctataaaagaatagggagaaacctgcccc<br>tcagagttctcagtgaggtagaagggccacaattaggtagcaattatgattaggtatctatatagaggaaaggaacaaacagggtcagaaaaataaatat<br>tccctattgatatcctaacaaggccttgactgaaagcaaaacaaacacagaatgagcaatgcagcttctgaggctcaagacaatttggataattaattat<br>aattaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	431	115	NA	intergenic
0	chr2	28353953	28354247	1000260	0	-	Ya5ACA791; RIP_Alu_chr2_028_01	GGTATCCACTGATCGCTTAC	AGTGATTCTCGGGTTTCAG	SINE	Alu	Ya5	ctcccttatttacccatcctctccttttctgccccaacttatccctgctaaacactcactcgttcttctcctatgaactgtatcaataataataatattc<br>atggctattacttgctgagtgtttactgtagtgccaggcactgtgattaatgctttatgaacagtattaatataatcctgaaaacaacactaagaaatag<br>gtattattatgtctattttatgactgaggaaacaagctcagagaagttacattttgtgacagctggtgagtggcaggaaccaggtttaaactagatctgc<br>ttgactcagagcccttgccttatgccacgtcattctactgcctctggtatccactgatcgcttactaatatgggtcagtattttcaatt<font color="green"><u>AAAAAATAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>ATAATA</u></font>ataataataataataataataaaacactctttggggccaggcactgtggctcatgcctgtaatcctagcactttgggaggccgaagcgggcaga<br>tcacctgaggtcaggagttcgagaccagcttggccaacatggtgaaactctgtctctaatgaaaatacaaaaaattagctgggcgtggtggctggtgcct<br>gtagtcccaggtactcgggaggctgaaacccgagaatcacttgaacccagaaggtggaggttgcagtgagccgagattgcaccactgcactccagcctgg<br>atgacagagtgagactctgtctcaaaacaaacaaacaaacaaaaaacaaaaaacagaaacattctttgggaggccgaggcagcagaatcacttga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	598	230	NA	intron:BRE:NM:004899:7/13
0	chr2	39071491	39071819	1000261	0	+	pAlu2-39029100;Ya5ACA828; RIP_Alu_chr2_038_01	GTGAGAACAGAACAAAACAACACA	CCAACTTGAATGCTACCTCCA	SINE	Alu	Ya5	ggctattctttcagcccaatcattcttgttttatgtttcatttctctatgatttcctataagatttcatttgcataaagtgtattgtagctttttaaaaa<br>aaagatttaaaaacctatgattctataatcctgacttcctccaaccccttctctccattaaatgccaacactcttttcacattcaccgtttgtttgttta<br>ttgaatatttactgaatgcctattttggacaagggactatggtgacggtggtggtatggtatagaaaaataagtatactttcaaggagcttacaaactag<br>tgagaacagaacaaaacaacacactatactgtaagacagaaataaatgttattagaggcacaagaaaagtattctgtgacttctaat<font color="green"><u>AAAGAAATGATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATGATTA</u></font>atttttaatagcagaaaataggaaatttcatggaggtagcattcaagttgggtgttaa<br>agaatgactagagaaggaagtgggaaaaagaaatacagatagtaatagtatggcatctttcagaaataacaagtagtctgagagtgctaaggttttatag<br>gtaggaaactaaagaaggaagggaacttaaatattggctggggtcagatgatatgggcctttagtgtccacaaagtgtgagtgatagggaaccaatgaaa<br>atttctaagaataggaggaatgtgaacaattctatgtttaaagataattctgagcctgggcaacatagtgagaccttgtctctactaaaaataaaaaaat<br>tagccaggcatggtggcacacatctgtag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	494	152	NA	intron:DHX57:NM:198963:11/24
0	chr2	114197453	114197760	1000262	0	-	Ya5ACA864; RIP_Alu_chr2_113_01	GCTGAGCCTTGGTGAAAAAG	TCACTGAATTCCCCTCCATT	SINE	Alu	Ya5	atatcttttaggtcatattcctttcaaagctttttaagagatgaaggcttatatttagagtactttaggaagctcaacatcacaaaaatatgaagtatag<br>aatgggagagacttagggcaatgaggaaaatcttaaaaccagtccaagcctgagacagaggccctgaacatgagtgtttcacagggcagtgatgtgaaaa<br>ctgaaaggaaagggtgaatgtaagaaatcttctaagagaagatttactagggctttttaaccatattatgaaaaaaaaaacactttaagacatagctcat<br>tcattcgaaggtttctaatacgttacagatttatgctgagccttggtgaaaaagtgaacaagatagtctctgccttcatagagcttagaaat<font color="green"><u>ATTAAGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>ATTAAGGG</u></font>aaggggggaatggaggggaattcagtgaataaggaggcaattatgtcacagggtgacatattcaataggagatgcacaaaatgc<br>tatggagaacctaagagggacatctagccagaggagtcacagtaaaaaagtacctattccaaggggctaaaacacttggcacctttgaagtaacattagt<br>tcattgtgcggggccaatttggcaggctggaaaggttggcaagatccagatgctacaggtccttgtaattcatgttaaggaatttggattttaacccata<br>gggatgccactgaaaggtgtgacgcagtcggattgacatttataaagatcattaaggctaacatgcaacgaataaattaaagggcagcaagactccagat<br>tagtcagg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	410	94	NA	intron:CBWD2:NM:172003:1/15
0	chr2	56083543	56083843	1000263	0	-	Ya5ACA877; RIP_Alu_chr2_055_01	AAGCCTCCCTGGAAAAGTGT	TCCAAAGGATGTTTGCATGA	SINE	Alu	Ya5	cgtaaacctcgttgttccaaacactcaaccaagatcctgactcctaataatgaatcatgtggtgaaaaatctcactccatccatcagtttatttacctaa<br>ccttttttctctctttccttactcctcttcataaacatggatacaatggctgtttaaacaccatatctacttttaaggaatatacagtttattggagaga<br>caaagtaatcaaataatcttacagacgaatgtaattttagaaattacatgttaatatactttgcacattgcaactgtgacacgtgctacaaaaaaaggaa<br>tgtggtgctacaggagcctataaggagaaactcaaatgacctactcaagcctccctggaaaagtgtctcttgaactgagatctt<font color="green"><u>AAAGATGAGTAGGAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGTCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGATGAGTAGGAGT</u></font>taactacataaaataggtagggaaaaacattcagaaagggatctgctcatgcaaacatcctttggagggagggaacattttct<br>gggacccagtccaatcaaccaaaataccagtgtagctggagccacagataaggctggctacagtataatctataaagagtaaaaacacaactttaaagta<br>aagaagtagtaaagagcaaagtaaagagtaaagacacaactttagagtaaagaagttgtgtctttactcttatatcaatgggaaggtatttaaatatttt<br>aagcaggtaagtaacaatcagattcacactttggaaaaattccgtttagcctggagataggttggaagtgggctcagatggatgcaggttagaaagctat<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	437	120	NA	intergenic
0	chr2	134460280	134460571	1000264	0	-	pAlu2-134482500;Ya5ACA891; RIP_Alu_chr2_134_01	GCCAGACTCCCTCTCTGATG	ATGGTTCCATCTTGTTTGGC	SINE	Alu	Ya5	attctctgagcagacctgggctggtgcataaaccatggctctctcctcctcaccattttagttactgctaacttagaacacaccacctgtctctcacctt<br>cactgctgctgccacttctctgtttccattccagccccaaccattcactgtccacacaacaattaaaaagggatcattttccagtatgaatggaatcaca<br>tcccttccctgatcaaaagcctcccagggcttcccattacttttaagaacaaaatccatatgagttatttaaggcctgcctgacttggccccatacgcct<br>cttctccttctgtttccacgttctgccagactccctctctgatgcacacaggccccctcccaccttcctcctccagagatagctt<font color="green"><u>AGAAAAAGAGACGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AGAAAAAG<br>AGACGAG</u></font>tgaggagaacgttaagcaaggtgagaactatccttcataccatgaaaataagcttatggtaagccaaacaagatggaaccatggatttaaagc<br>tttgtggatcatgatctgcagtaagcaaatgcagtttacacacacatacacacacacagccaaaaagagtcatttcattaaacaatgtaatatggtctta<br>tgtggtatatactctgatattttcttatataagtaatatagtaatatattacttatatataaaatatgttatacatgaaatatatataaatataaaaaat<br>atataacatattttatataacgtatataatatatataagtaatatatatattacttatacagtaatataaaaatactgacttttccatgcta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	465	158	NA	intergenic
0	chr2	41942600	41942915	1000265	0	+	Ya5ACA912; RIP_Alu_chr2_041_01	CCATGTCAGTAGCTTTCACG	GCCTGACAAAGATGAAACTG	SINE	Alu	Ya5	taaacatcagcactaaaaatacaagtagttacaagaagtggcctccaggaaccagaactgagggaagaagctacacgggactggagccagttgcttttct<br>cagaaacccttctgtaatatttgaatcattatcttaagcatacctttctttgcaaatttaaaaagattaaaatgtcataaatgtagaaagcaaataaggc<br>cataaaggtaaaaataataataataataattgtgatgagagggcaggagacggggtgggagggaatatggctgtgatggacatcatccacgtgcaggaca<br>gaatcacagaggccaccctgtaggtcagcctggcagcattcagcgtccttgtgggctggcccatgtcagtagctttcacgaacaaaacac<font color="green"><u>AGTCACCCAG<br></u></font><font color="red">GCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTGTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGTAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAACCACACACACAG</font><font color="green"><u>AGTCACCCAG</u></font>tctcatttcagtttcagtttcatctttgtcaggcccagccttggtctccagtcctgactcttataatgaccttt<br>ctctccaccccacggcccaatagtcacatcttccacattgtcctagaaatcatgtcatttccaatttctagaaggtccttggcatccaaagcaattctgg<br>ggtcctgagtcaacatcttcctcctataacctctttctctttttcctgtttttccaaaaggaaaccaatgctcctaaaagtattttcttaagcaagctct<br>cagttgcagagagctctgagtccctaacatttggaccttttactgttttctcacatgttaaacactgtatcccaatgtctaaaatagtaagaaggtcaat<br>ccacacagaaaatgca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	400	74	NA	intergenic
0	chr2	161795611	161795924	1000266	0	-	pAlu2-161759537;8756;Ya5ACA914; RIP_Alu_chr2_161_01	AGCATTGCATTTTTGGAAGG	TACATTCTTGTTGCTGGGCA	SINE	Alu	Ya5	attcacccaacaattcgccaagggctacctgcattgtcattgcatactataagtcagactgaaagcagggaaggcaggtgaagctctgccttccccactc<br>atctcctggatgggtagagcaatgatgtgccacacctcatttcctgttatccccacttcagggcccccggcctatcacaactgcaaaccccaaacttctc<br>tctatagataatatactactagaaaaatgtctactgtccccttacaatctagtaaattaaaatatattccctgtccctttagcattgcatttttggaagg<br>cttctcacttcaaatttggaaaataacaaggaaatgtcaatagtctttaaaaagtctccaaaagtacttcttgtagcgtcagcctctctt<font color="green"><u>AAGAATCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTTC</u></font>tacttgttctctgcacttttagaggcatgcccagcaacaagaatgtaacgattgcattttaacacttcattcattt<br>tgctttctaaaagaagattaaatgaaggatattaagtcccctccacatgctaagaattctgaggagtaacttcaggatgaaaacatatatgatcctgctc<br>ttcttccctaggtatccagatgttgaacttggactgtgtaagtctcttccagatatagtttggatatctgtccccactaagtctcatgttgaaatgtagt<br>ccccaatgttggagtcacagcctaatgggaggtgtttggatcatgggggtggatccctcatgaatggtttgggccatccccttggtgatgagtgaggtgt<br>cactctgagttcac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	491	167	NA	intergenic
0	chr2	169395478	169395774	1000267	0	-	pAlu2-169359396;238889;Ya5ACA921; RIP_Alu_chr2_169_01	GAAGTTAATGAGGGTGCCCA	ACTGAGCAGAGTGTATGACCG	SINE	Alu	Ya5	gactgattttgaaagctaatatgcaggtgcatgtttagacatatacatgtgcatgtgcctgagtgagcaggcatatgtgcatgactgtatattgttaaat<br>cctacctaagacaaaactgtttcaagaaaacaaatatttagtggaatgaaggccaggatggagaaaggggactgctatttattgacagatactatatgcc<br>aaaagctttgcaatgtttaattcttttttagatcaacaataaccctttcaattaaatatttatttcatttaacagaaatataaactaaagctcaaagaag<br>ttaatgagggtgcccaaggtcttaaaggtagttaaatagcttagacaaaatttagatccgatcaatcataacataatctattaat<font color="green"><u>AAAAACAATATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACAATATTTTC</u></font>cacactccctaaaataagaaaagtaaattaaagaggtattgttaaaatacttgtgatacggtcatacactctgctcagtaatcccact<br>tttaggtatttatctaagacaatctgtcagacaaagaagaaaggccacagatgtaaagattttcacgcacaattatctgcagagggaaaatggcaaatag<br>cttaatgagtcactacaaaatgactcagtgagcatctattatgtatcagccctgctctaggtgttggggatgctgcagtgaacaaaatcccatttttatg<br>gagcttacattctagcagagggagattaaaaataaaccaagcagtgtatgctatgccagatggtgagaagtgctagagagaaaaatacagcctgcta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	495	183	NA	intron:LASS6:NM:203463:1/10
0	chr2	166267524	166267832	1000268	0	+	Ya5ACA923;10935; RIP_Alu_chr2_166_01	TGAGGCTACTACCCCTTCAA	TGGCTGTTCAGAACTTTCAC	SINE	Alu	Ya5	tcaattaacttataaataataatgaattaagtttcctatttcagccacagttattctctattagctgaaatgctccttctctcgcgctctctctctctct<br>ctctctctctctctctgtctctctgtctttccctctcttattagatttctacatataacttttcctgtttcagagggaattaattttttttcccagtata<br>catcccttctttggagaaggaagattgtttaagattggctttattgactctactgcactagagacaaaacagaaataagtaggcaaaggtatttatgtgg<br>aaatgttttaaccattagtattaggtgaaagttctttatagcttttagaatattgtcctgaggctactaccccttcaaggggctta<font color="green"><u>AAAGCTCCAGACCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGCTCCAGACCC</u></font>agcttttagtgaaagttctgaacagccaagttggaaagttatttttttaagctgaaagtaaaaggtagaaaaatgga<br>tagtataatagaactagaatattttcacttcttatttcaggggttgttttttacctgattaccctaattgatcttataaaaatgtgactatagtttgtgt<br>tgttgtattattatttttgtaataattataataatattttttgaagatctgaacttcaatatttgataatacaataataacatttgaatagctcatctct<br>atagagtaattcattacttcaaagtacaaaatcggaggaagctgcatggcatattgaaactcctgtgtttatctgcactaatcacttcctggtaccattg<br>tgctcaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	393	70	NA	intergenic
0	chr2	184249982	184250309	1000269	0	-	pAlu2-184213921;5056;Ya5ACA937; RIP_Alu_chr2_184_01	TACTCGTGCAGCAAAATCCA	ACAGCGGAGTGAACGTATCC	SINE	Alu	Ya5	catgttggtcaggctggtctcaaactcccaacctcagtactgcttcattaccactcccaatcacaaattctactgatggttaatttgtaggctgagatca<br>caaatcatcatgaaacacaggtggtattctagagtttccttgtgatacaactctgttgagtaggcttcaattctgttgtacttgcaacatttgaaaacta<br>aatggtaagatgacttgcaagtagctgttgaataatgaatgatgtggtatagccacaaggatacagtaattaatatttaagagtgacaggctcacctccc<br>tgggaatggagcagaaagtccagcacaatgagtggctatataaaaagattactcgtgcagcaaaatccagaagctaaactctagt<font color="green"><u>AAAAATCCATAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCCATAAACA</u></font>actgattcgtcaaataattaatttccttcctttatttagtgtacaaagtatttttgg<br>gtctacagtgttttgaaaagggatacgttcactccgctgtttttgtatgagacccacttctacacattttcttgctacttgtaagtagtaagtacaaccc<br>ctcccaaatgttggggtagcatcactaatctgattagtagagagggttcagatgactgaggggtcactaatctgatgagtcagggcccagaacatgcact<br>gggtcatggtttgctagaggttgaggttattgggccttcaagtcagcactctgaaggatggctgtctcttctattttctgtcccaaactttttcacacct<br>cctctacatccccaactgtgtcatcagt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr3	123236758	123237061	1000270	0	+	pAlu3-124517886;Ya5ACA1011; RIP_Alu_chr3_124_01	CGGTCCCTGACCATAGATGT	AAGCAGTCAGTGTGCAGCTC	SINE	Alu	Ya5	agtcctttaactccagcaatgatagcccagagaacaatattctcagcaattggtgactgtggccccaagaaaagagctggggcctactcaacccacagtc<br>cgcccccaaatctccaaatgcagtatcccaatgtgcccacccaacactccagaggggagaagatttaccactgacagaaaggtaactgaaatgtcaaaag<br>aacatgaaactggcaatatattttgtgaaatgtcatggttctttctgttctatgacagtgtaataattgcaaaaatttcaaaaggtggggaaaaaaagct<br>atgaacaccatctcttggaccagaaatatcaaaatggtgacctacggtccctgaccatagatgttctgtttgggcttgtacagtgcttt<font color="green"><u>AAAAATATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATATTTG</u></font>aatcagtttttaaaaattaggggatttctcattttaaaaatctagatttctgccttttctcaaaaaaattagattttgcactact<br>gaatctgtctggcaatctctagctgagctgcacactgactgcttgtgtgagatggcatgcaccctccagtcaccatgcttttcttccatgttcttttaaa<br>atcctgtgggacagacctctgccgccagtagatagcctctgctacagattgtaaagtgctacacaaatgtcatgcaacatatttgaaaactctaaagttt<br>taaaaactttagttatttaaaagtgttatttaaaagtctgattagtttttacacttgaggctctgaacatacttttctttaaggcaatgaccttggccaa<br>agat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	185	NA	intron:PTPLB:NM:198402:4/7
0	chr3	23086852	23087134	1000271	0	-	Ya5ACA1052; RIP_Alu_chr3_023_01	TTTCTTCAGGAGCTCTTTTG	CTCAGCAGAAACCCTACAAG	SINE	Alu	Ya5	ctgagtcttggttctttatccagcttgccactctgtgtcttttaattgggccatactatgccccaatactatgcccttttagttggggtatagtattgtt<br>atgtacgaatttgatcctgttatcatgatgctagctgattactttgcagagttgtttatgtagatgctttatagtgtcactgctctgtgtacttcagtgt<br>gttttgtaatgaccagtaacagtttttcctttccatatttagtgctttcttcaggagctcttgtgaggcaggcctggtggtaacaaattccctcagcatt<br>tgcttatctgaaaaggatcttatttttccttcgtttatgaagcatagtttggctggatatgaaattctgagctggaaattctttccttt<font color="green"><u>AAGAATGTTGA<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAG<br>CCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC<br>CCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGTTGA</u></font>atattg<br>gcccccaatctcttctggcttgtagggtttctgctgagaggtctgctgttagtctgatgggtgtccctttgtaggtgacctagcctttctctctggctgc<br>ccttaacagttttttctttcatttcagctttggagaatctgataattatgtgtcttgaggatgatcttctcatggagtatcttactggggttctttgcat<br>ttcctgaatttgaattttggcctgtctagccaggttggggaagttctcatggatgacatcttgaaatatgttttccaaattggttccattctcccttctc<br>ttttagctaccccaatcagttgtagatttggtctttttacttaatcccatatttttcagaggttttgttccttcatttttctt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	493	199	NA	intergenic
0	chr3	125489416	125489713	1000272	0	+	Ya5ACA1063; RIP_Alu_chr3_126_01	CCCTTTATGAGCAATGCGAT	CTATGCCCAGCATTTTTCA	SINE	Alu	Ya5	aacacttggggtcagaccattcgtggtggtggtgggaggggcgtcctgtgtattgtaggatggttagcagcatctctggtctccatcctctaggtgccat<br>cctaccctcccagctatggctaccccagatgtctccagatgctttcaaatgctgtgggacaagggagtggtacatgagcaaaaccaccccagttgagagc<br>cattggtctacacttgtggaaatgtttgagggtgagagtgtcgagctcgggtccctgctgtaccctttatgagcaatgcgatcttggaaaattaatacga<br>ctccaggggccttagttttctcatctataaaatggagataaatgagatacactttcataggaaggttatatgggatttactgagataat<font color="green"><u>AAGACAGTACA<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GACAGTACA</u></font>tgaaaaatgctgggcatagcatttatttatttttatgttttttaaagacctaatcttactctgttgcccaggctggggtgcagtggcatga<br>tctccgctcactgcaacctccacctcctgggctcaagtgattctcctgcctcagcctcccgagtaggtgggattacaggtgcccaccaacacacctggct<br>aatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctaaggtgatcctcctgccccggcctcccaaggt<br>gctgagatcacaggtgtgagccaccacgctgggctgggcatagcattgtaacacagacaaagcacaaaatacttgggcaatatctttttacatttggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	466	157	NA	intergenic
0	chr3	49494288	49494605	1000273	0	-	pAlu3-49348609;22534;Ya5ACA1134; RIP_Alu_chr3_049_01	TCCACCTACCCAAGTTTTGC	GACAGCGCTCAGTGATGGTA	SINE	Alu	Ya5	tgctggagacctgtagctttctggaaagaccttccacagagtcccattggcaattttgagcccaaattccacaagcccacacactttcaaggacatgcaa<br>ggatgtccagcctcctgcaggataaattaagccccaccctcaccctaccctaagcaacagggacctccatgtgagaaggccacatggaggaggagttggt<br>caagacttaccagtctcctcctctctcctcgacccccatagatactctcacttgtgaaggttcctcttccacctacccaagttttgcccaccccactcaa<br>gaacaacacccccaagccttcctgacatctgactcctcattgtctaggaaacctcaagcttctagagggcaatgattgcccttgataat<font color="green"><u>AAGTTACCATC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTACCATC</u></font>actgagcgctgtcctatatctttggcacacgatatctcaccatgccttccagcaaccctctgtcacagtta<br>ttattggccccacgttacagatgagaaaactgaggcccaaaggttaagtcacttactaaaagtcccatagccagtaagtggccaagctatggatctgtgc<br>ttatctttgtaacctttactgggcctggcccagaataagaattccactaatgcttgctgaatgagtcaatgaatggatacaattccatcaaaactatagc<br>taccaggacctatccaaccctagggcccaggacacagaggccttggagccatgtaaggggcttccagaccagtccaggaagaacaaggctaggtttctgt<br>ccctctcccaccttgggc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	146	NA	intergenic
0	chr4	184303704	184304009	1000274	0	-	Ya5ACA1172;pAlu4-184888050; RIP_Alu_chr4_184_01	CTCTCCACCAACAAAGAATC	TGCTAGGATTATAGGCATGAG	SINE	Alu	Ya5	caaccaaatggctttctgtttgtctttcatgatgaaattccagaatggtttccctaaggaatgaaacgtgaccaataaactcccagaatctcaaaaaaca<br>ccagtaaaaagccaccttccctgctgtcctcagcatttgacacatacgtggccagtgtgtgtcctcacaagcctttcctttgccctccatcctctgattc<br>tgctggaggaagtaccaagtgctttggagccatggcttcataaccagggtccagttgctccctctccaccaacaaagaatcttaatctttcttttttttt<br>tctgtgttgtacattttttattggtatggataacttattaaagtaacaaatctgaaaacacattttgcttttgctggtggtgg<font color="green"><u>AAAGAAAGTGCTATGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGAAAGTGCTATGTT</u></font>aggccgggtgtggtggctcatgcctataatcctagcagtttgggaggcggagtcatatggatcatgaggtgaggagt<br>ttgagaccagcctggccaagatggtggaaccccgtctctgctaaaaatacaaaaattagtcagccatggtgatgggtgcctgtaatcccagctacccggg<br>aggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcgcaccactgcactctagcctgggcgacagagcaagactcca<br>tctcaaaaaaaaaataaaaaaattaaaaaaaaaaagtgctgtgttagagaggatctaagagaaaccagaagtcatttgcaaaaaataggcatatgatata<br>gtctgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	499	176	NA	intergenic
0	chr4	95498973	95499280	1000275	0	-	Ya5ACA1197;pAlu4-95891648; RIP_Alu_chr4_095_01	TCCATAACCTGTTTGCTTTTACC	TGCAAGCCACACAGAAGACT	SINE	Alu	Ya5	tttattttcagagtaatcaagtttttattgtcctaatatctagacacttgaaatcaagctatttttaaatacacccagtttgcaaatgcaaagcagtaac<br>ttgcctgaaaatgatgcaaaatatgtagtaatctcttttctcctgaattttgcacagtgctggacagcaggcatgtgcttaataaacactgccaattgat<br>taagaagccatcataaaggctctataatactgcctagtttcagtttaaaaataataagctttaaatcatttcaagttttatcaccaaagctgtgcttata<br>aaacacaaaacttaagcttggtattttcagatgttttaaatgcagtacttttccataacctgtttgcttttacctctacaactttctattaa<font color="green"><u>GAAGAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAGAGTT</u></font>ttttatgagatttcaagaagcactagtagaaaagattttagttaagacacttccttcaatggatgtttttctactgaacttgga<br>atttaataaacatggtaaacttctgttttagtcttctgtgtggcttgcatttgacagacagcatctttctttgcaggatatctactctgattactcgaaa<br>atctattgtcttaaaataaacatactaaaaaaaaaaaaaaaaaaaaaagattacgaccaaacactcctgaacactccatactgtttctcttcctcacatg<br>aaagaaacaataacattcttttttgaaggatactagttttcctcaatatatatatatatatatcagaactttagaaagccacccacaacctcaagaccgt<br>atgtacag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	498	182	NA	intron:PDLIM5:NM:001011515:5/9
0	chr4	100070305	100070604	1000276	0	-	pAlu4-100462978;12480;Ya5ACA1202; RIP_Alu_chr4_100_01	ATCAGCTTTGCCTAAACCTA	GAACCTTTTCTTGGGGTCT	SINE	Alu	Ya5	ggcaagcatgaaaagtgaaagtagtgaagcgcttgcccagccatacaaggccagcatagagctgcagtaaaagcaaaggcatcaagctggaaaatgatga<br>gaactatagcttttccatacctggcaaaggggatcaggtggattaatccaaagcacacaatggcaaagatcttgcaaggctacttccatttttattatac<br>cccagggactctaacctcatgtgcctagtctctaacctgaatatcagctttgcctaaacctaatagaggacaccaagatggacccaacttaccagagggg<br>ccaatgagtgttgtgcagactgaatttccttggcattaggtaacatcttaaggtccttttatagtgtccccagaagatgatgct<font color="green"><u>AGAAAGGGGTCTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAAGGGGTCTTTTC</u></font>aagatccagaccccaagaaaaggttcttggatctcacccaggaaggaattcaaggtgagtctcagatttctgtgagaagagata<br>gtttactgaaagccactctgtcacccagtaaagcatcctcaaaatgaaagcagaggaatgcactgtctttaagtttttcttatataggggtcttgcctat<br>gtaaagattaaactaagctgtgcctatgtgcaggtgggctgacagcatgactaaatgtattattctactgatttaaagaaaactatccttgatatcttaa<br>tgtgtaagtccatcgaagcataactatatcttgaaagcatatattgttataggtgttgtaacatctggacttttctgttgtaggactttgtccttgcagg<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	111383222	111383532	1000277	0	-	pAlu4-111776324;Ya5ACA1217; RIP_Alu_chr4_111_01	TTTGCCATTTTCTTGTTTGA	TTTCACCTGGTTCTTTTTGA	SINE	Alu	Ya5	catctactcaaagaacccacagatttcatcacgagtatgaattttctcctgagagtcaaggtcaaaactatgcctacctgtgtccacttgcatattccac<br>caacaattcagttggtctaaagctaaagagtatcactccccacagaaacactgtagctctgcactccttaccatgtttcatttctccatcagcattacaa<br>tcattttcctcagtatcaaccaagaccttccctctctctcacagacggctagatatattataggtgcttgtcaatttgtagcttctctttctcatctctt<br>ggcactttgtataggttattttgtatagctttaatttgccattttcttgtttgaattttaaaaatccagagcagcaccgattaat<font color="green"><u>AAGAGATAGTGTGAG<br></u></font><font color="red">TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGATAGTGTGAG</u></font>ccatagccatatgtgtaaatataaactttcttagtagccacattaaaaattcaaaaagaaccaggtgaaaataa<br>ttttaatattatggtttatttaacccaatttatctgtctgaaatattattgtttcgtgtgctcaaaataaaaatatgtacttaatataaaagttaataat<br>gtattttacatttgttggataacatcaaaacctagcatgttttatgcttataccacatctcacttaggactaaccatttcaagtgttcaatacgcacatg<br>tggccagtcgctgccctagtgaacagcacggctctagagctttaagactatcttatgcttgcttgtgttcatgacattttgtacaatgtgtagcacaaaa<br>atgtgtttggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	462	136	NA	intergenic
0	chr4	117251488	117251797	1000278	0	-	Ya5ACA1233;Ya5-MLS47; RIP_Alu_chr4_117_01	CACACACTATCATACCCGAAT	AGCAGTTCAGAACCATCCTA	SINE	Alu	Ya5	atcatacatttcctttttcaccatttttccaatattctacctaatatcttgtacatgtgctactactatgcaagttccatctgctactcgtcaatttgtt<br>gtagttgagattctaagttgcctccttaacatgaatattgcctttttactttgccattatcagttcttcagaatggagagtgttattctatatttataaa<br>ctatgggttattaatttttaattttttaacttttatgttggagagacctttctccgttgccaagactgagtacaatggcacgatcatagatgactgtaac<br>tttgagcttctgggatcaactgattctcctgcctcagcttcctgagtagctaggactacaagcacacactatcatacccgaataagctttta<font color="green"><u>AAAATTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAATTTT</u></font>gtagcgataggggcttattacctaggatggttctgaactgctggcttcaagtgatcctctcaacttggtttcccaaagtact<br>gcaattacagggttgagtcaccatgttaagtctatgtttatttgtaatatttgatattatcaaattactggatatttataatacatatgtaatttcaaac<br>tgtagtaataaaatgaatacctgagtacataccacttaatttaagatcttatcattttaatatctcatcaaaatagtacaaaatactgtagagaaatgaa<br>agcataatggttttatcaatttttgtttctataaaaaattaccttgactgggtaattgataaacaatataaatttattgctcacagccctggaggctgag<br>aagttcaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	398	80	NA	intergenic
0	chr4	120017253	120017555	1000279	0	+	Ya5ACA1242; RIP_Alu_chr4_120_01	GCGAGGGCCTTATAAAAGATG	ATTGGGTTTCACATCCGTGT	SINE	Alu	Ya5	ccgaacaaaactgtctgctttctacatgttttccacagtacccctacttgcttctacctaacattcaacatcttgtaatttcttatttgctaatccattt<br>cccctagtagactgtctatgaaaggaggcatgtagttcttaacccaactggaattttagtatacatttgttgaattaacagatgaaggaaaagcatacgc<br>tttactattaactatcctcactataaactaatatatgtcattgcctttgcggctaacctcagatgtcacaaacctacaatgctaaatctgtcatactaag<br>gatcctctgtgcttttgttaagtttatccaggctatggttaacttcagaattctctcctttccagtgactgcgagggccttat<font color="green"><u>AAAAGATGCTGCAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAGATGCTGCAATGA</u></font>atttctttctttatttcatttgcttgcttattattcttattccttctacataaaacgaacaaacaaaacaaaacaaaagc<br>acaagctctggtggcaaatagacacggatgtgaaacccaatttcaccactgctagctttatgatcgtgaaaaattagtcttttagtttcagtttcttacc<br>tataatacttacatccatatcataggattgtcaaagaattaactggtacatatcaaggcctcctggtacatagtaggatgttggtaaatatgaaacctat<br>taaatctcttttttctcttacccctttctcataactcccattattacagcctcaaaatgcttaccacctgattattcagtacacgagctgcttctcatat<br>ttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	151	NA	intergenic
0	chr5	13895093	13895379	1000280	0	+	pAlu5-13927730;Ya5513; RIP_Alu_chr5_013_01	TGGCAGGTAGAGTAGCCAAAA	GGCTGTGTAGGAGGTGAGACA	SINE	Alu	Ya5	tattcaacagatgttaggaactcagcctttagaattcagaaatactaattattcaggcagacttactgatctttgcaaaagtgttttctaaataagcctc<br>aatattcagtgatgtccaggtcagtgcagccaagccaggttggagagcttcatccactttggccaagtgagggacaatcaattgctcaatggcagcaggt<br>atttttgacttcactctctgatattcagctagcatcatctgcaatgaaattggggttaagtaatcaattaatatctcacttctaatgtctgttaatatct<br>catgtcttatacaaaatgactacttttatttagggtcaaactgtagggctctaatagcctggcaggtagagtagccaaaacaataaaaag<font color="green"><u>AAAAGAAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA</font><font color="green"><u>AAAAGAAGAC</u></font>aag<br>gactctctccataattacaaattcctaatccaaaaaaatacaactgaagatgaacaagaatttaagactaacagtgtctcacctcctacacagcctaaaa<br>agggagaaaatctaaggccaagtaatttttctaaaccatgcagaaacacgggaatggcaccttcacctgctcatcaccaggcttgtttgttcctctttgt<br>acactgatacgacatgcgtgctgctcctctggggacctcttgtagactacacccatcacccaaaacatgtgggtcgccagaggtctacctcagccctttg<br>ctaggattataggccaaatcttgttgccaagacccaaagcacaccgggaaccagtattgatctcaactagtgtcacggctttgaatt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	436	139	NA	intron:DNAH5:NM:001369:15/79
0	chr5	65346049	65346372	1000281	0	-	Ya5ACA1292;pAlu5-65316484; RIP_Alu_chr5_065_01	AACCAATGCTGGGGTTATTAAG	TGCCCAGTTGAGTTCAGAAA	SINE	Alu	Ya5	tatgagtttgtttcactggagagcagagtgaggtgtcttgactactatcagtattaagagaaactgaatcagacatccgagatggagaagaacaattgct<br>gttattctgattgctattgtgtgtaacttcatctgataaagaatctgtttcctttgtatcatctgaaacaaaacaaatttaagattaatgataaattccc<br>caagaattgtgtgaaattcttttcagtgatgacaaatggcaattataccatcctggttctatatatgaggtaataaattatattgataattggaagcacc<br>cctgaaaattcagtcctaatacaaagattaaataatttttagatggtgatataatttttcaaaaagtaaccaatgctggggttattaagaattc<font color="green"><u>GATTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGAATTC</font><font color="green"><u>GATTTA</u></font>gttactgacaaggtgatattattatgtactgttttctaaggtcagttaatttcaatgaatatacttttca<br>cccatttacaatttgaaaaactgataatgaaaattcatttacaacctttctgaactcaactgggcaagaaattatttcatacatatatggaattttttcc<br>catctactctaataaaaataagcaattcaatccacaaacatataatcaccaaacaaatcaaggaattttcaaaggtcagctctttcttaatgtttttaaa<br>acatttcataaacttgtttatgaatggtaaactctcagtatgtaaggtggttgtgtgtgtagcaattacatgaacagaaacagacaagtgttcatattct<br>ataataggtagtataacaagtagt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	169	NA	intron:ERBB2IP:NM:018695:19/25
0	chr5	78092705	78093000	1000282	0	-	Ya5ACA1335; RIP_Alu_chr5_078_01	GGCATGGAAACTAGAGGAAC	AAGTGATTCTCCTGCCTCAG	SINE	Alu	Ya5	aggttgaacctgttttgatggccaaggccagcagatggatgtcaatatccctatgtgaaatacaggagtggagcaccatcgaaggaatgatgtgagaagg<br>aagtgagaaggctgggctttgttactgtgcaggttcacctgggctagaggcactatggttggatacacaaaacaacagtctgggttagagataagattct<br>ggagtctagaatacccagcgaaatgttgggcatggaaactagaggaacgaaaacattgaagagatgaacagtgaaaaaagaataagcaaatgaggctgaa<br>aagaatggcaggtagaggccgggcgcagtggctcgtgcctgtaatcccggcactttcggagaccaaggcaggcggatcacaaggtc<font color="green"><u>AAGAGATCGAGACC<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCAGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>GATCGAGACC</u></font>atcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcgtgtgcctgtagtcccagctactcg<br>ggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagattgtgccaccgcactccagcctggtgacagagtgagactcc<br>gtcaaaaaaaaaagaatggcaggtagaaatgagactcccaaagatgaacccagatggagcattttctctatgccaggcactgcagtaagtgctttgcacg<br>cattgtctcacttagagactgaaaaggggaaggacaccttagaaagaagaaaatttcaaaaagagagaccctccttctgccttgatcatatttgtc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	597	287	NA	intergenic
0	chr5	73648997	73649303	1000283	0	-	pAlu5-73687606;240;Ya5ACA1339; RIP_Alu_chr5_073_01	CAGCCACAACAAAGCAAGAA	TATTTATGCAGGGCCTTGGT	SINE	Alu	Ya5	tcaatgtaatacaatgtataattagatgtttgcttgtttcagtcttccccattgcatttcagccaccacacagtcaggggccatatgtctgcttcattca<br>cttttatattcacagacatgcacaatgcctggagcctaagaggtgctcagtaaatacttgctgaatgaatgagtgacctttgaggaaagcctcattagca<br>aatatatttcttggccagttgaatccaagctcttgttttatattccagaaagaaaacctgcagattccattgatctggcatggagctggatgtctttcag<br>gatgaagagttttcattaaaacacagccacaacaaagcaagaaaaaagagcaattgatgtaagcatgccagtcaggttcacatgttaag<font color="green"><u>AAACAGAATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACAAA<br>AAAAAAA</font><font color="green"><u>AAACAGAATAA</u></font>aaagaaataaaaattgataaacaattgtaaatcataccaaggccctgcataaatatgacttgctattatgcataatacaata<br>catggcatttttgtcttggaacctgtccaatgtggtttattattggaagaattgggtgaatcttgttaaaacacagctttacctgaaatttgatccctag<br>gtgtgaacccagaggacaatcttatggggattttccaattatggttttaagtaaggagttgtggaattctcatttcatcctcttcaaaatttcttgcttt<br>aaatgaatgagtagactgaattattctccttttaaaaaacaattgttttgcttggtgaagaccagaagaatcatgccagttctaatgcaggagagaaata<br>catttta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	450	132	NA	intergenic
0	chr5	53176942	53177233	1000284	0	+	Ya5ACA1360; RIP_Alu_chr5_053_01	GCAAACTGGCCAGAAATCAT	ACAGAAGATGGTGGTGGAGG	SINE	Alu	Ya5	ctgcttaataaaagtgttgggttgatacactgcatgtctagaaagttgtaaaacaactggagaaggtccagagacaaacctgacttgctccagattacag<br>agaatgacagctagacttactgtttgcattcttgtctctgccttttggtgagccgtttccattctaacaaaatcttctcatttttaatatttatatgtct<br>aatgatttaatatcataccacatcactctggccttcaaggtgccctggacacacatttttctgatttacctttacacagattatacgcaaactggccaga<br>aatcattcatttcaacatgaacctctcaggtaagaattgtggtcttacttctctctccagaaacagctttcttcacagactctgttt<font color="green"><u>AAAACCAGCTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAACCAG<br>CTCCC</u></font>tccaccaccatcttctgtaagcttgtccagacatggggtacatcattaggccaggtcttccagtcattcccttgcttgcaaagcaatcatttata<br>ggcgtttggtgctttgtctgacatctgtttgatgctggaactctagcctttgtctcaatgaatcacttgtcggtgaaagtccattgtaggctggatttca<br>cactttcaggaggggtttgcctgtgatggaagtgatcttaggctttttgaaataaccagctccctccgcctccctatattccatgaagaaacaggaaaat<br>gagagagtctggggaacctggtgcttattcaagcctcattttgatttgttcccttgggcctgagccaggttagcatctctggggactacatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	437	132	NA	intergenic
0	chr5	164366313	164366608	1000285	0	-	pAlu5-164301750;3812;Ya5ACA1436; RIP_Alu_chr5_164_01	GCATGGAATCAGGACAAGTA	TCACATGGTGAAAGGTGCTA	SINE	Alu	Ya5	atagatttgaagcttgaagacatctttgtttctctgtacatatgtataattacttgaaaaaatatttagtttttatcttaaccaaagcccattatctagt<br>tggtagttatcttgtttgctctagatgtattacctgagtggcatggaatcaggacaagtatgtaatttgtagagccccctgttcaaaaataattaggaat<br>ctcaagacagtaacagtagagcattaaaccaagtgtggggtttgttatggtctgaatgttcgtgtcccctgccagactcatatattaaaatcttaccctg<br>ccaggtgatagtattaggaggtgggacttttggggaggtaattaggtcatgatggtagagccctcatgattgggattagtgttctt<font color="green"><u>AAAAAGACCTTAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>AGACCTTAGA</u></font>gagttagctagcacctttcaccatgtgaagacatagcaagaaagcactatctatgaaccagaaagcaggcccccatcagacagtgaatct<br>gctggtgccttgaacttggacttcccagcctccagaactgtgagaaataaatgtttgttgtgtataagacactcaacttgtggtattttgttacaatggc<br>ccgaacgcactaagactgggtccttttgagcataaggcccttcacaggatttgtgcccatgaatccagtactgtatggaattcattctaccaacaccatt<br>gctccttttcagcctgtattgaagttcctctctttattgatctctttatgttgaggtgcctaggaccacaggccttaccctctgttctattcacac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	598	288	NA	intergenic
0	chr6	108266122	108266415	1000286	0	+	pAlu6-108266151;Ya5NBC54;31139; RIP_Alu_chr6_108_01	GTTTATGTCAGTAGGAGTTTTCTCGTGTAG	TCATTGTATCATCTGCTGTACCTGT	SINE	Alu	Ya5	tgaaacccgtctgtactaaaaatacaaaaattagctgcaggtggtggtgtatgcctgtaatcccaagtactcaggaggctgaggcaggagaatcacttaa<br>acccgggaagtggcggttgcagtgagccgcgatcacaccactgcattccaacctagatcagagtaaaactcttgtctccaaaataaaaataaaaataaaa<br>ataaagaagtctagcctggaaatagaaattttggagtctgtgcattagtctaatcctaagcctgtcaccccacctgggttacaaattctaccaaaataag<br>actatgtttatactgcattcatcattgtatcatctgctgtacctgtacggtcaaacagtgaacgcttaatcagtaactactaaaactaaac<font color="green"><u>AAAAATCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGAACCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAT<br>CTA</u></font>aagcaaaaaaagagttggaatctacacgagaaaactcctactgacataaacagaattccaaaatgtaaagaatatctttcttttctttttttttttt<br>ttgttttgagacagagtctcactctgtcgcccaggctggagtgcaatggtgcgatcttggctcactgcaacctccacctcccgggttcaatcaattctcc<br>tgcctcagcctcccgagcagctgggactaaaggtgcacaccactacgcccagctaatttttgtatttttagtagagagggggctcactatgttggccagg<br>atggtctcgatctcttgacctcgtgatccacccccctcggcctcccaaagtgctgggattacaggcgtgagccaccgagcccagccgagaacat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	433	139	NA	intron:SEC63:NM:007214:1/21
0	chr6	62053995	62054299	1000287	0	-	Ya5NBC171; RIP_Alu_chr6_062_01	TCTAGAATTACAAGTGCAAGCCATC	CTTCTCATCCCTGCTAACATAACAT	SINE	Alu	Ya5	ctctcttgttgggggctaataacgcagctggtgaccttaagtggaagccaatgctcatttaccattctaaaaatcctaggggccttaagaattatgctaa<br>atccactctacaaatgctctatgaatggaactacaaagactggatgacaaaacatctgttgacagcatggtttgctgaatattttaagcccaatgttgat<br>acatactgatcagaaaaaaattttttttcaaagtgttactgctcattggcaatgcatctgttcacctaagagcgctgtttgagatacacaaggagattaa<br>tgttcttctcatccctgctaacataacatccattctgcagcccatggatcaagggataattttagctttcttgtttcattattt<font color="green"><u>AAGAAATACATTTTGA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAATACATTTTGA</u></font>gctgggtgcgatggcttgcacttgtaattctagatactcaggaggctaaggtgggaggactgcttgaggctataagaat<br>gagaccatcctgagcaacatagtgagactttgtctctaaccaaataaagaaaagaagagaaaaagccagagctcagcaaggctgctgtagacagactgcc<br>agatttttcctctctggacagggaatctctgaaaaaaaggcagcagccccagtcagagacttatagatagaccgccccatctccctgggacagagcacct<br>gggggaagggacggctgtgggcgcagcttcagcagaattaaatgtccctgcctgatggctctgaagagagcagcggacctcccagtacagtgctcgatct<br>ctgct	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	55	451	130	NA	intergenic
0	chr6	9263737	9263985	1000288	0	-	Ya5NBC197; RIP_Alu_chr6_009_01	CAGAAGTAAGATTGCTGGATCGTAT	CTCAATGAGATATCACCTCACACAT	SINE	Alu	Ya5	acataatgtcctccaggttcatccatgttgtctcaaattacagaattttcttatttttttaaggctgaagagtgctccattgtgtattacaccattttct<br>ttatccattcatctttcagtagacatttaagttgattccatacctctgtctgttgtgaataatgctgcaatacacatgaaaatgcaggtatctcttcaac<br>atactgaattaatttcttttgaatatatacccagaagtaagattgctggatcgtatagtagtttcatgtttgtttttaaatgaatcttcgtgctattttt<br>cataatttctgtactaatttacattcctactaatagtatatacccttttgtccacatccttgccaaaagtttgaagtcttttgtcttatt<font color="green"><u>GAAAATAGCC<br></u></font><font color="red">GCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGC<br>GCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC<br>CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAGCC</u></font>attctaatatgtgtgaggtgatatctcattgaggttttaat<br>ttgcatttctctgatatttaatgatcttgagcattttttcatatacctgttggccatttgtatatttcctttcaagaaatgtctgttctgttgaccattt<br>tttaattgagatttttttgtttgagttccttgtatattttggatattaaccctttattagatgtatggtttacaattttttttcatttcgtagtttatct<br>tttcactccactgattgtttcctgtgttgtgtgaaagccttttaatttgatataattgaatttttctctttttgcttttgttgtgtgtgtttttgtggtc<br>atatccaaaaaataattggtcagaccaatattaagaagattttaaaaat	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	461	204	NA	intergenic
0	chr6	124498923	124499229	1000289	0	-	Ya55572;pAlu6-124433954; RIP_Alu_chr6_124_01	TAAAAGAGGCGCAACGGAGT	TACATGGCACCTTTTTGCTG	SINE	Alu	Ya5	tctactaaaaatacaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactcgggaagctgaggcaggagaatggcgtgaacccaggagg<br>cggagcttgcagtgagcctagatcatgccactgcgctccagcctgggcaacagagcgagactctgtctcaaaaaaaaaaaaaaaagttaatgtacgtcta<br>aatccatttggctgctgtaacaaaatactagaaactggggggtctgataaacaacagaaatgtatttctcacagttctggaggctggaaagtgtaagata<br>aaagtaccagaaaatttggagtctattgaagccctcttcttcctgtttcttacatggcacctttttgctgcatcttcacatggt<font color="green"><u>AAAATGGATGAACAGA<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAATGGATGAACAGA</u></font>aactccgttgcgcctcttttataaaggctttaatcccattttgagagcttcctcctttatgacctaatcacttccca<br>aatggccccagctccttggaggttaggatttcaacatatagattttggggaaaaaaaaactttcaaccataacaatgtacgtaaaacacaatcatatctg<br>ctatgcagagatttctaaatagggattaatttttttgtatttcctattttcccaggataagtgtaataatgttatggactggtaatagactgatgccata<br>actatgttttaatgaggggttctgaaagtcaatacctgggccacaaaaaaggattccagtggtagtcatttacagaaatgtcacaggattataccagaag<br>tttaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	394	71	NA	intron:NKAIN2:NM:001040214:1/7
0	chr6	105567854	105568172	1000290	0	+	Ya5ACA1458;pAlu6-105567882; RIP_Alu_chr6_105_02	ACAGGCCCATAAAAACATGG	TTGCTTGACTGTTGTGACAGG	SINE	Alu	Ya5	gtcctcatgagggcccagccatgcacctaagtgctaaagacagttaggactgatgttccttcgttgtgcaaagatgtcacccaggactctggaaaagagt<br>gggtgaaggagttaaaagaggagatggaaatcatctatgagatgaagaaattatatttagatgatacataaggctgttaacttttcttcagccatctgaa<br>ttacctcaagtttccactgaggcaatgaaacttttacaatgacactgtaatttccttagcaaattcactttttattgatggttaaaaaattactttcgac<br>ctgtttaagttattattgaatataaaataatagtattcaaataataagccgtacttagttcatatgagtaacttacaggcccat<font color="green"><u>AAAAACATGGATTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGAAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACATGGATTTGG</u></font>ttggaagccagtagttagagtgctgactgaggtcattttacttgattcctaatgtttcatttcta<br>ccaaatagacagtttatttaatgatttcctgtcacaacagtcaagcaaagtgtattttttatgagaatatcttataaagcaatataagaattttaaaagt<br>ttccataaaataaatttacttcttattaggcatttcagtagtgctatgcttgagtccttgtgaagaattttactgaagaaataaaagcaaatacggcaac<br>agaatacataaaaggacatctttcaggtcgagaattagactaagcatttgcaaacaggtttgccgtgattaccacaaggtactggatcagttcctccctt<br>tagattccaaaccaattct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	474	139	NA	intron:BVES:NM:007073:5/8
0	chr6	11903453	11903748	1000291	0	+	17222;Ya5ACA1491;pAlu6-11965898; RIP_Alu_chr6_012_02	TTCCATTAAGTCAGGCACAAA	CCTGCAACTCCTACCCAGAA	SINE	Alu	Ya5	aaaacacctaggtatataaaatactgagaaatgtttttattttgggtgggcccagctcagctaaaactcaggaggtctaattttgagaaacaagggaaaa<br>acaaatacttacagattaacagcaatcttttacataaaaattttccacccccaagtgaaaataagtagcagtttcactttttcaaaggctttagactatt<br>ttgtttcctagaaatatatttattttcattaatagattattgggtctgacctccaactcagataaaaccattggattccattttttattatccctatgag<br>ttctatcctaagaatatgaaataattcaagattccattaagtcaggcacaaattaccctttaattatattagtagtctatcatc<font color="green"><u>AAAAGTCTTTAGAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GTCTTTAGAGTG</u></font>aaaaggaaaatacatgaatgtataataaaagccaagaaaatgtaaaactattcattctgggtaggagttgcaggcttctctgagttca<br>gagatatttatgtaagatgtgcttagaagaacaatgtctttttaagctttgcatcccatgacatattaacagtaaaatttaaaagggactcagtaatcag<br>caaaatgacttatatgagaatgttcacaacttgtttcatactaaccgaaacctggaaatggtccaggatggatccataggtgaatggattagttgtaata<br>tatgcatacaagggtatatgcatactcatcaataaaaagaaacaaactattgatacatgcaacaacatggatatgtctcaaaagcattatgctgga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	455	143	NA	intergenic
0	chr6	134817361	134817662	1000292	0	+	pAlu6-134752390;Ya5ACA1497; RIP_Alu_chr6_134_01	GCAAGACTTCCTGAAAGGGA	TGCAGTTCCAGAAAAGAGCA	SINE	Alu	Ya5	tacagagaaacaactttctcactgccactactgcccactccaaacttcaggttcatgttgccccttcatttctttcggttaccatgttattagttcgtta<br>attctttaaatcatttcgcaaggatttactgtactgagcacctcttctgtgccaggaatgtgttaggtgcctgccgggaaggatttcaaaattgagggtg<br>gagacaggaaaatagacaacatctggttggcagcatgttaagaggtcagtgtaagatgggtgtagcctccgagagatccttaaaacatactgggggtact<br>aaaaacagatacttaaaacaggctggggcaggcaagacttcctgaaagggatgaggcctgcaccaagccagctaggtgaataggt<font color="green"><u>GAAACAGCAGTGGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>GAAACAGCAGTGGAG</u></font>gatgacccagcaaagggagctgccgtgcatagccatgacatcacaagacaatgtgctcttttctggaactgcacttttttgtt<br>tgtttgtttgttttttgagatggagtcttgctctgttgccaggctggagtgcagtggcacgatctcaggtcactgcaaccttctccttcctggttcaagc<br>aattcccctgcctcagcctcctgagtagccggaaatacaggtgtgcaccaccatgcccagctgttttttttttattttattaaagacagggtttcaccat<br>attggccaggatggtctcaatctcctaacctggtgatcggctggcctcggcctcccaaagtgctgggattacatgcgtgagctactgcgcccagcctgac<br>gt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	459	142	NA	intergenic
0	chr6	32503949	32504023	1000293	0	+	238419;Ya5ACA1508; RIP_Alu_chr6_032_01	TGCAGACAAACATGGAATGAA	TTAGGGAAGAAGGGCTCCAT	SINE	Alu	Ya5	ctgaggagaggacaggacaatcagctgcagagaggagccaccctctctgttgatagctgaacagatgtcggggcaacctggcagtggagaggagctgccc<br>actgtggctctctgagctgttctattgcttaataaagctcctctttgtcctgctaaccctttacttgtctgggtacctcattcttcctggacgcaggaca<br>ggaacctgggatctgcctaatgatgaggctaaaaaagctgtaacacaaacaggttgtagatgagcaatagagaatgtagtcaaatgcagacaaacatgga<br>atgaaaaagcaaaaataaatccatatcattccatgtaacaagaccattttttaaaagtagttttaagtggacagaaaaattgcag<font color="green"><u>AGAAAGTTCATGGAG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAAGTTCATGGAG</u></font>cccttcttccctaaagcagccttctgcttaatttctcctattcttaacatcctgcatcggtgtggtatacttgttaccactg<br>atgaagcaatactgatacttgttgttaactgagatccatagtgaaattagggatcattcttattatacagttctatgggttctgataaatatattatgtc<br>atatatccaccatttagtggaactgacccaagagtcccataggcagttttttttttttttaaataaacatagaaatggacacttctggtcttaaagcttg<br>aaacttacatttgttttatttgagttcctttccaaaaaaatattctcccaggcctctcaaaaagtatcaaagaactggaactcaccagatcgtctcatct<br>agt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	448	130	NA	intergenic
0	chr6	22227485	22227754	1000294	0	+	238761;Ya5ACA1516; RIP_Alu_chr6_022_01	GGCAATTAAGGCACTGTGGT	ACCATGTTCCCTGATGTTCA	SINE	Alu	Ya5	agtacctgaggcctctccagctatgtggaatggagtcaattaaatctctttcctttataaattacccagtcttgagtatttttttaatagtagtctgaaa<br>actgactaatacacatcttttcctttctctgtctgaacatagatatggtccaccctcttcttgccctttctgccaggcttttccactgctatggagaaat<br>acagagtataagatacaaaagtcagtagttttgagacagattacgatttaaataattaaattgccacttaggcaattaaggcactgtggtacattaggat<br>tataacctgaactcctgaatataaattttaaaaaattattttggcccctattttccaatggtatttcaacctttattagcttcccatt<font color="green"><u>GAAAAACTTGTG<br></u></font><font color="red">GGAGGCCGAGGCATGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGG<br>CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC<br>ACTGCACTCCAGCCTGGGCGACGGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAAAAAAGAA</font><font color="green"><u>GAAAAACTTGTG</u></font>tgcacagagaaaatgatt<br>cataactgcaatagccctgaacatcagggaacatggtaaattttccagaatgttggaagtattttactaaccaagtttggatcaggcttctatattaggc<br>aaaataggaagagcaccggacttggggtcctggtacctgccaccaagtagtggctttaaatgagtcacttttctgtagacattagctgcctcatctaaaa<br>agtaatgagattgaagctagtggcttttaagtgtcgtttaaggtacttacgtcctataacctgtttgtgtgtgtgtgtgtgtgcatctttacaaaagcag<br>atgagattgaatgaaaatttatgcctttctttttttgagtgcattatgtaatacactttgcagacttgtg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	467	165	NA	intergenic
0	chr6	51517364	51517675	1000295	0	-	Ya5ACA1532;pAlu6-51518660;13202; RIP_Alu_chr6_051_01	CCCCTTGTGGCACATATAGAA	GCTTCATGATGTCCTGAGCA	SINE	Alu	Ya5	tcaggaccatgaaaggtaagaaaattgtatctatcaactcagaaggataaccagaaaagtcattcttgtcatacaaagtatacagaaggttattcttgag<br>ggggagagatcacagtgttctatatctttgcatatctcacagtgccttgaacaacatttgtacatagtagaagggttaacatatacttgttaactatata<br>gaaatatgttgatattagatttgcattttccctgtatataaacataatatatttaatttagaattctttagaattgactaaagaatttacttttttcttt<br>cagagtacaaaattgtccaaaatcattttatatttcaagtccccttgtggcacatatagaatatttggccttatctagcctattta<font color="green"><u>AAACAAGAGAGATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAACAAGAGAGATA</u></font>aaaaatgctcaggacatcatgaagcattcaatcaaaacatgaggctttttataggaactcggcttagtagcttt<br>gagaagaaggttgaagagagagtatctctgatttccaccccaacttcacctcaccccaccacagtaggtcttgttgagagccagttttcactaataaaac<br>ttacttgctttctgagttttccatgcaaatagaaataattccatcttctacagggtaaacatttcagatctggtggaatcgaaaagcaagaataatgaca<br>tgaataggagtgatctcttaattgggaaatttctgtattttcttgacttttctcctatagcctgcatttaagcattgcagaaaaaaaaatctctcacata<br>cctaactgggta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	411	85	NA	intron:PKHD1:NM:138694:61/67
0	chr6	74421263	74421559	1000296	0	-	1968;Ya5ACA1570; RIP_Alu_chr6_074_02	AGAAAACTGCACATGTACCC	ACTGTGAAGCAGAAACATTG	SINE	Alu	Ya5	aactttaaaatacaatttttttttttttgagacggagtctcgcttcgttgcccaggctggagtgcagtggcatgatctcggctcactacaacctccgctt<br>tccaggttcaagcaatcctcctgcctcagccccccagtagctgggattagaggcatgcgccaccatacccggctaatttttgtataaaatacaatatttt<br>ttagagagtgaaataatagacattggagattcatatggcagggaggtaagggataagaaatgacttaatggatacaacatacactatttggctgatgttt<br>atactaaaagcccagactccaccactacccaaaatatccatgtaagaaaactgcacatgtaccccctaaatctataaaaataaaatatttt<font color="green"><u>AAAAACTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACTTA</u></font>aagtacgattttaaaaatacaatgtttctgcttcacagtttaatgtcactttaaggcaaaaaaactattgggtaaattcagtctacacagaaaa<br>cacaagtattctgagcagaacaaaaccaaacaaaaaatctcctttggtcccttacatactccttttatatttttctctcttatttccctttgcttacaaa<br>tatcttaataaatttgagtttcataaacaaagttttgttccattgtctaaaaaaaagcaggttaaacacaaacattgagtaaaaaaaaaagcaggtcaaa<br>cacaaacctactaaaagtaaaataaataaaatggtacactataaagcaaatgttaggttaagtacaaatgaaaaacccagagtcaagcaaggttctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CD109:NM:001159588:2/32
0	chr6	32657953	32657954	1000297	0	+	Ya5ACA1571; RIP_Alu_chr6_032_02	CCTCCTGCAAGAACTAAGCG	TCCAGTCAGTAGTGAAGGCATC	SINE	Alu	Ya5	gcctgtctctggactcaactcaacatcccatgtcctcgctcagactatataactctagacccagcctgttaatatggactgcttgtattttttcagagaa<br>acctctaaaagaaattatcaatttcttcaaaacattaacttgataggttctttttaaatcaagtaatctgttgaaaaaaaaattatatgggtgctctaaa<br>ctatatcccctggataatctaacctgtaaatagtttgaacagttatcttttacagccagaataacaatactagttaataccagaggactaatctatgggt<br>agctcgtttcaaaatttactctgagagcttaaaagaaaatatattttgtagggaaacaaagcatatttttccaagatccagtcagta<font color="green"><u>GTGAAGGCATCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GTGAAGGCATCTT</u></font>aatagtatccaggatcctcacatgtgaagaaaagtgaactaggtaacaaatgagaagacttacatacgcttagttct<br>tgcaggaggaaaggaactatctgggtatggaaaaggttactaggcaagattgtgattgaagagaaaggataatgataaaggggctttgcagaagctctgg<br>ttagaagaaataactaatagtaatgaatatgtatctctccaaccaatgagaagcatatgatgaggcagagtcacttgtctctggcagtccaagctactaa<br>gaagcacaaataaaatatatagtagcagggggagatgggaagggtgagagaatgtaggataaattaccattcaaactgccggtagaaatataaaattgta<br>aggaataaat	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	425	110	NA	intergenic
0	chr6	169223151	169223457	1000298	0	+	Ya5ACA1574; RIP_Alu_chr6_169_01	AGGAGAATCACTTGAACCTG	GGATCAAGAAATGAAAATCG	SINE	Alu	Ya5	cctccaggcagatcgccatccttggcacgaccactgcaggtcatttcacactggggcccctgtggtcttgcatttcctctcccatctttgagcacattat<br>aaaaagttctttgttggccgggcacagtggctcatgcctgtaatcccagaactttgggaggccaaggtgggtggatcatgaggtcaagcattcaaaacca<br>gcctggccaacatagtgaaaccccgtctctactaaaaaaacttacaaaaaattagctgggcgtggtggtgggtgcctgtaatcccagctacttgagaggc<br>tgaggcaggagaatcacttgaacctgggaggtggaggttgcagcgagccgtgattgcgccactgcactccagcccagatgacagtgcgagactct<font color="green"><u>GTCTC<br></u></font><font color="red">AAAAAAAAAAAAAACCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG<br>AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAGTT</font><font color="green"><u>GTCTC</u></font>tcttgtattttccactattgaatagagtgtgcttaggatgaaaatgacagagaatgcgattttcatttcttgatccgtcaatatttta<br>ctatgtgtctgggatgaagcactaattaccttaaaactgtaattaacttgtcaaatgtctttcctccaagaatcctgcaaaggtcttaaaggtcttaaag<br>ggtgagtaagtaatagtctgtgatataatttaaaaggaaggccacaaaccactttttctgtttttctttgatttcatggaatagtcttcattcttttctc<br>ctgtcctcctatttggatacatgtggctgccgtgagcctctagacgccctcccccacttccagcacttggctgacggatttgctggtctgtgacccctgc<br>cagaggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	482	170	NA	intergenic
0	chr7	34849070	34849416	1000299	0	-	Ya5NBC28; RIP_Alu_chr7_034_01	GGGTACATGTGCAGGTTTCTTATAC	GCTAACTGATGAGAACACACAGATACATAG	SINE	Alu	Ya5	tgtagattgaagtctaatggagagcatttacttcactttcttcttggcagttatctttgttctgaattcgtgcctttttgttctttctctggctcagaca<br>aataacaatcaagcacattgtggttctttatgatttgttatttctacaaatgcatctcagcactaatgttgtgaaagccaccatagggaggaggttctga<br>ggaatgattagaaattgaaggctcgtaagaaagaatgagataatgtgctttgcagggacatggatggacatggatggagggcattatcttcagcaaacta<br>atgcaagaacagaaaacaaaatactgtatattctcacttataagtggaagctaactgatgagaacacacagatacatagaggggaacaaaacaca<font color="green"><u>CTGGG<br></u></font><font color="red">GCCTATAGGAGGGTGTAGGGTGGGAGGAGGGTTAGGATCAGGAAAAATAACTAATGAATATGAAGCTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTG<br>GATCACGAGGTCAGGAGATCCAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCT<br>GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAATAC</font><font color="green"><u>CTGGG</u></font>tgattaaataatctgtacaacaaacccccatgacacaagtttacctgt<br>ataagaaacctgcacatgtacccctcaacttaaaataaaagttagaaaaaaggtttaaaaaaagaaattgaaggctcctctgaaaactaaaagaaaaaat<br>tatctcttgggaaaaggtgacaaatagagaaagagaaaaatggaagactagctttaagaaaaaaaaaatcgatcgtctacttagacaaaactggggtttc<br>tacctgtgatccatgaatttaaaattattaaggctggcaacaaacagaggaggaggtggcatcagagaaggatgaaaaagaaagcacacaatggcagaac<br>cctgtggagtggaacatcatggtgaggttataaggatcttggggctc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	474	191	NA	intron:AAA1:NR:015356:1/5
0	chr7	38281642	38281951	1000300	0	-	Ya5NBC38; RIP_Alu_chr7_038_02	GTACCCTCTAATTTACAGTCATCTCATACC	GAACTTCTCTGGCTTGAAAAATCAG	SINE	Alu	Ya5	tactacactccagttgtgataaaaaagaaaaatgtattcttcacgaacttcaacattttgatatgcaaaaacatagtatataaattagatctacctgatt<br>acgtagaatcagaccaattatttctggaattgagggctcatatttttaataactgtcctcctgcctctctgttgacaggttttataaatattcatttaat<br>tacacacacacacacacacaccttgacaaataatggacatgaacaattgactagtacttgctctcattcttctagatgtcatcacaatggatcccaaaga<br>caattggtcaaaagatgcaaatggtaagcttttgtgtttttcctttcctcctgatcattttaagttttgaacttctctggctt<font color="green"><u>GAAAAATCAGGGAATGG<br></u></font><font color="red">GCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAAAATCAGGGAATGG</u></font>attttgctaggttggatgctgcagaatggacctagtgatattttaaattagtccctctttttctaggagttgt<br>attaacaaacctaactactgcttcgggtatgagatgactgtaaattagagggtacagtgatatgctttcagttatttcaaaaaacagactttattcatcc<br>gtctgtcttttttttttttttttttttttttttttgagacggaggagtctcactctatcacccaggctggagtgcagtggcgcgatctcggctcaccata<br>acctccgccttactggttcaagcgattctccagcctcagcttctcaagtagctgggactacaggtgcacaccaccatacctggctaatttttgtattttt<br>aatagagatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	487	170	NA	intergenic
0	chr7	81002855	81003150	1000301	0	+	Ya5NBC194; RIP_Alu_chr7_080_01	TATTCTTATGCCGTTATGTCCTCAG	CCATGGAATACTACTCAGCTATGAA	SINE	Alu	Ya5	agaaaataaatattctctttacataggtattttaagaaggcaataagataagtgtacttggatactgggatgcacaggtttgtttgtttttttttccaat<br>ctttttttttttttaatttcaataggttttggaaaacaggtggtgtttggttacatgaataagttttttagtagtgatttctgagattttggtgtaccta<br>tcacccgagcagtgtacactgtacccaatgttagtcttttaaccctcacccacctaccaccttttccctcgagtccccaaagttgattgtattattctta<br>tgccgttatgtcctcagagcttagctcccacttataggagctaacatatagtgtttggttttctattgctgagttacttcactt<font color="green"><u>AGAATAATGGGCTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCAGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>TAATGGGCTCCA</u></font>attccatctaggttgctgtgaatgccattatttcattccttttcatagctgagtagtattccatggtagtagtattccatatatatat<br>atggaatatatatatgtggaatatatatatatatatatatatatatatatatatggatacacacacacacacatgcacacacacacacatatacactgca<br>ttttctttatccacttgttggttgatgggcatttgggctggttctatatttcaacaaatgcgaattgtgctgctataaacatgtatatgcaagtgtcttt<br>tatatataatgactttttttttcctctgggtagacacccaggagtgggattgctggatcaaatggtaaatctacttttagttctttaaagaatctc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	486	169	NA	intergenic
0	chr7	29273445	29273745	1000302	0	-	Ya5NBC203; RIP_Alu_chr7_029_01	CAGCCTGTAGAAGCTGGAAAAG	ATACAACAGTTCTGGAGGTCTGAAG	SINE	Alu	Ya5	tcaccactgactgagcctttaaaaatcccatgcaaacttaagagttataacctggggccaatggagggcttcagtgaggtttatgggccccattaaattt<br>tatgattttgtgcactgaattattttaaaagaatgagtctgatcgaggaaggtttagaatctgctgctttaagaaatggtaccagacattacgtcattac<br>cataatgaaaatctgcccttttttagtgtcatgatctcaaacaactaatattttcattcactcggtcactatatcagtttcttattgctgcagcaacaaa<br>ttaccatatacttggtggcttaaaataacacaaacttattatacaacagttctggaggtctgaagtctgaaatcgttcaaggta<font color="green"><u>AAATCAAGGTGTTGGC<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAATCAAGGTGTTGGC</u></font>agggctgcattctagggaaaagagaatccattttccatttcttggccttttccagcttctacaggctgccagcagtcctgggc<br>tggtggtctccttgcatcttcagggccagcaatggcccgttgagtctttctcactttgcatttttctgaaactgacccttctgtctccctctttcacatt<br>taaaggacccttgtgaatacatcagacccacaggaagatccaggataatctccttaatctcaaaaccagctgagagaaaccttaagcccatctccaacct<br>taattcccactagccacacaacctaacatgtttacaggttccaagtggaagtcgacatcttgggtgggagtgcatttttctacctaccactgttacttca<br>c	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	445	128	NA	intron:CHN2:NM:004067:1/13
0	chr7	113258472	113258790	1000303	0	+	Ya5NBC204; RIP_Alu_chr7_112_01	AAGCAAATCAGTCCTACCATGA	TATTTTGGAGAGTTGTAGGCAGGA	SINE	Alu	Ya5	agaaggtttattcctagacaggtaggccccaaaagctcatttttagaaagttgtgaagtctcagatcctatgaagagaagatagcgggaggaaggaagaa<br>aaacaataacaaacaaaggaatgatcctagaaaattgatatagatcttacgtatgtaaataggttgctgttttttttttctttgtagtttaagttgtcta<br>gctttagttctcagggctgtaaaaaagaacagcttagttttcagtgatttcaaattaggaaaaaaatgagggggaaaggaaaagaaagaagaaaaaatga<br>aaatattattttggagagttgtaggcaggaaaaaatagaattcagcacaaattgtagaaaacaataaaaattgaaaagcattaggc<font color="green"><u>AAGATTAGAATCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTAGAATCTA</u></font>acaacaagtgtactatagttttgaaacataatttttctctgtcaagtttcccatttttattaaagac<br>aaatcatggtaggactgatttgctttattacacttggtcagattatttgtataaagtgcagaaaaaattattttttatataggctttttaaaattggctt<br>tgatggaattttattccatagaaggcatctcagataagacttttttaaagctgagctcagtcatggatttgtgccatcaaatacctatgagttgggtgaa<br>tttcctctactcttgaggttccaagatatacctggggctccgggacctgtcagaaagtgaccttctttacttaccacaggtcagaaaccctgtacaggga<br>ttctgtacatagaacatga	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	5199	186	NA	intergenic
0	chr7	7717290	7717604	1000304	0	-	Ya5NBC214; RIP_Alu_chr7_007_01	TGTTGTTGCAAAGGACAGGA	ACGTCCACATTCCCATGTTT	SINE	Alu	Ya5	tgaccaataggcatattaaaaaaacgttcaatattgttgatcatcagagaaatgcaaatcaaaatcaaaatgagatatcatctcaacccagttaaaatgg<br>ctttaatccaaaagataagcaataacaaatgctggcaaggatgtgtagaaaagggacctcataccctggtggcaggaatgtaaattagtacagccagtat<br>gaagaccagtatggagattcctcaaaaaaactaaaaacagaactactatatgatacagcaattctattgctgggtacatacccaaaagaagaaatcagca<br>tatcaaagagacgtccacattcccatgtttattgcagtactattcacaatagccaacatatagaatcaacctaagtgtctccatc<font color="green"><u>AACAGATGAATAGAT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAACAAAAA</font><font color="green"><u>AACAGATGAATAGAT</u></font>aaagaaaatgtggtacatatacacaatggaatactatttagccataaaaaaagaatgaaatcctgtcctt<br>tgcaacaacatagatggtactagaggagatcatgtaaagtgaaataaagcaggcacaaaaagacaaatttcacattttctcactcatatgagggagctca<br>gtttttttcaaattgaactcatggagatagagaatagaatgatggttaccaaaggcaaggaagggtagcagaaagagggaaataaaatggggatggatga<br>tgggtacaaaaatacagttagatagaaggaataagatctagtatttggtagcacaatagggtgactatagttaacaataatttattgtatatttttaaat<br>aactaaaagagtgga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	500	170	NA	intron:RPA3:NM:002947:4/8
0	chr7	110542699	110543009	1000305	0	+	Ya5539; RIP_Alu_chr7_110_01	GTTGTAGGTTGGGGATGGAC	CCTTCAGATGTTCCCCATTG	SINE	Alu	Ya5	ttcaaaatataataatgatattaacagcctactattaattatagaaaaaataataagtgacagtaaattaggttttgtgaaacaaacaaaaaacagtaat<br>taaacccagatacctaaaagcctgtacacttaactaatggtccatactcctttaaaaaaaaaagattaattctgattgggctgatcctgatctggaaaat<br>tagaaaaataaaatataaatatgtcatgaatgataaaatatatatatatatatatatatagtatcaagggttcatgttggaaaaaccctgagttctttgg<br>tttgtctgaaatgtggtttaatggaaaccaccaaacgtaggttgtaggttggggatggaccgtagagagactttaatatcaatct<font color="green"><u>AAAGAGTACAGACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGAGTACAGACTC</u></font>tattttgtaggcaatggggaacatctgaagggtgttaataaaaaaagtgacaagattatacttaattatccttc<br>tgaaactagcagcctgagggccaaatggactcagctgaacagccagcgactgatgaaagccattcttcaataaattcaatacaattaggttcccccagag<br>tggcacccttgcttgccacacacaccaggctaacactgattacggggcaatatttgagtatacgtggtatgtggctgtgtatttcttttgggtaaatttt<br>attgtggtaaaagcacttaccatgagatatactctctcaacagatttttaagtgtaggatacattattgttgagtataggtacaatgttatatgtcagat<br>ttctgaatttc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	417	89	NA	intron:IMMP2L:NM:032549:4/6
0	chr7	118343816	118344155	1000306	0	-	pAlu7-117884412;Ya5ACA1616; RIP_Alu_chr7_117_01	TGATTCCACCAGAATAGTGACA	GGACTTCCCCTTACCAAAGC	SINE	Alu	Ya5	tatttatataataatccataagtcttcagaaaagtagttgagaagaaccacatttcaatttgaccagttgcttctggatactggaatatgtggtaagact<br>aaacaattccaggggcatgagcctattgctgaacttcctttgctataaaaagagtcccttgattagaacaaattcagagtggaataccatgatggtggat<br>aaggcatttgtgagtgtatagatatggattttgacagaattatgggcaaggaaggcaaatctacccccagaatagttgtctatcctaaggggaatgaaac<br>tttgccttctgtacaattgaaagcattcaatgaaatgaacatatcattaaatatttagttgattccaccagaatagtgacatatt<font color="green"><u>GAAAGTGCAGTCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGAACGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAAAACAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTGCAGTCTGG</u></font>aactctactattgttaaattaggcactcagctttagcagtagcag<br>aatgagctttggtaaggggaagtccacttagttgagtctacatataaccactatttctgccaaaatggccactttgttcatggggttgagtacacacaac<br>ataaaccagtgtctctggagaaagatgctggctgatatccataaaatatgtcattttttccacctgattgtccagccaatccattagaaactacccataa<br>atcaaagtatatccatacttctgatcattcccctttccaatgtatcactcaaggttctgtccactgggcagaactggctttactacaatactttagtact<br>cccgcttattgggttgtaaatgccagtgtctgaggtagaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	466	111	NA	intergenic
0	chr7	33898857	33899172	1000307	0	-	pAlu7-33606992;Ya5NBC209;3791;Ya5ACA1653; RIP_Alu_chr7_033_01	CCTGCTCACTGCTTTTGCTT	CACCTAGGAAGGGTTAGGGC	SINE	Alu	Ya5	aacaaaaaaaatgaatggatattggtactttctaccccagggtgtgctctatgctggctcccaaagatccacagcaggactaagctttagattcccagta<br>gtaacttgcttgatgatgaacccttatcttcgctgcccttcctccctgcctcactttcccactctcctaccagtgtttcctgggatcacctccattaatg<br>tccttatcttagtatctgcttctggtgggacacagaccaagacatcatttgtgaaagagatcagtccttttgctacaagctctccttttccaaaataaga<br>ggtgaacttcgatggagtcactcatgtgaaaagtagttactatacatatcacatgtgccaaggcccctgctcactgcttttgctt<font color="green"><u>AGAAAGCCAGGCTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGCCAGGCTCA</u></font>atcctattcttcatcttcccatagactaaagagaagtggggaataatgatgaaaagtcaaggctccaga<br>gtcagagcacctgggattggatcccagccctaacccttcctaggtgtgcaattttgaataattcattctccatgtctccaagtcttcatttctctgtctg<br>taacatggataaaatagttgtgtctaccgtaagagatttaaatgagatcacttatgcaaagcactgaacacatcatgtggtgcacagcacatgctcaata<br>agtggcagattctcttattgaccttctagtttcaatttaaatgccctctctttgcggaagccttgcctgacctaagagtaaggttttctcatatgttccc<br>acaagatccctattct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	447	116	NA	intergenic
0	chr4	133114054	133114359	1000308	0	-	Ya5ACA1251; RIP_Alu_chr4_133_01	GGCAGATACTGTGAAATGCT	AAGTGCTGGGATTACAGATG	SINE	Alu	Ya5	agatgtcttcaatgaggttaaatgttaaattatttactcagcacttatttctttattataagggacatttactaggcgagttccccattctccctttaga<br>gatacttaatatctagctaattcattactatttcagtaagaaaaattagaaatatttccagagattactttgggaaccaattactatccacacagtgcat<br>aaaaccatactgaattggagatgttcactccttacaattcagaaatacactatgtgataacattcagaggcagatactgtgaaatgctttgaggcctaaa<br>gattttatttaagaatatcatcatatatcataaatgaccaaaaaaattggtgaaaatgaatcatctcacttcatatgattgattctt<font color="green"><u>AAGAAAAAGATGG<br></u></font><font color="red">GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAAAAGATGG</u></font>gctgggcatggtggctcacatctgtaatcccagcactttgggaggccgaggtgggtgaatcatgaggtcaggagttcgaga<br>ccagtctgaccaacatagtgaaaccccgtctctactaaaaatacaaaaaaattagcggggtgtggtggtatacacctgtaatcccagctactcgggaggc<br>tatggcaggaaaatcgtgtgaacctgggaggtggaggttgcagtgaaccgggatcatgccattgcactccagccagggcaacagtgtgagattctatctc<br>aaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaagatgacaccattctccctacttcatctgcctccccaccttactctcaccaaaatgaatagatgca<br>aataaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	489	170	NA	intergenic
0	chr7	68462084	68462389	1000309	0	+	pAlu7-67860298;Ya5ACA1684; RIP_Alu_chr7_067_01	AGGACAGGAAACAAATCCCC	CTCCAGGGTGTTCCCATAGA	SINE	Alu	Ya5	aaaacaaacaaacaaacatgtaacccagaatcttttccccaatctttgccccaaattagtgcagaggagggtctgtagtacaaggctcagccacgtgagg<br>gattgttacaaggagacaggggggttctgatgttagggagactggcctagacaatcacattcttgtggaagaacaaggacaaggttgtctgccagtgtgg<br>gatgagcccgggtggatcacgatggactcagagctgctgatgtttaactgaagaaaagggagatggaggccaaacaaaacaaagggggctttctccaaga<br>agtgccaaccttctctgtaacactgccccaatgatcccacaaagacttatataggaggacaggaaacaaatccccacggtaaccgat<font color="green"><u>AAAAAGAAACCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTCTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAGAAACCCA</u></font>aagccatcacttaccgggggaaatggcttccaatgctggttccttaaagaatgaacaagaacatccttgaatcctgtagcc<br>agctatctatgggaacaccctggagggcatgatgagaagaagaacccttatgagcctcatgccctagctggagaggagagaaatgcactcaccaacaaag<br>tgaatttacaattgcagacacactctgttacaggccaaataattgtgagctcctttctttttctttccttttcttttttttttttttttttttttttttg<br>agatggagtcccctgttgtccagtctggagcacagcggcatgatctcagctcactgcaacctctgcctcctgggttctgcctcaagctattctgcctcag<br>cctccc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	470	151	NA	intergenic
0	chr7	25044614	25044930	1000310	0	+	Ya5ACA1721;pAlu7-24752784; RIP_Alu_chr7_024_02	GTTTCAACATGTAACCAATGAG	TCAGAAGGGTAAGCTCAAAG	SINE	Alu	Ya5	acccaggctggagtgcaacggtgcaatcttggctcactgcaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccaagtagctgggatt<br>acaggcatgcaccaccatgcccggctaatttttgtattattagtagagacgggggtttcactatgttggccaggctggtctcgatctcctgacctcaggt<br>tatccatccacctcagtctcccaaagtgctgggattataggcatgagccaacccatccagcctggttttatttttaaaaaacatattttcttttatacaa<br>tgttcctaaaatgttgtttcaacatgtaaccaatgagaatatattaatgagacattccagtttaaaatgtcaatagtacttcaagatt<font color="green"><u>GAGAAACTTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAGAAAAAAAAGAAAAA</font><font color="green"><u>GAGAAACTTTGG</u></font>tttagatactggttgcatcactaaccaaatatatggctttgagcttacccttctgaatatcactcaatatt<br>cccacataaaaatggggagaataatacttatgtcacagtggtaatacctaaaactttttgaaagtactcacaatgggccaggcacaggaaaccaaaataa<br>ggagactgaagttcagaaaggttggtgaactcaagttttaccactagtgagtggctgagcaggattagaaactagtccaaatatgatcctttacatgcct<br>ctgagcctccagcttgaggggtgtatggctcccttgaccattcagttggaggggtcacttgcacttccatggcctccttgcacagagctgatcagaatta<br>cgcagatcattgacaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	470	141	NA	intergenic
0	chr8	126024112	126024113	1000311	0	-	Ya5ACA1736;pAlu8-125692903;1104685371245; RIP_Alu_chr8_126_01	CCTGCTCTGCACACTTCTTG;NA	GCTAGTCAGGGAAACAACAGG;NA	SINE	Alu	Ya5	aagttagtaacaagaaaacacttcaaatgactttccattgtctgtaagattaaatgttaatggtctgtctcccactctgacacccaccctatgctcctgc<br>cataggaaactgcttgagttccttgaaagtgccaccatttctcatcctttggcaatgttattccatctacctagaagttcctcatcttactgtccacctc<br>atgaactcccactcatcctccaggtccaaggtcctttgtttccactgtttcctgaacaacgtcctccctaactacccctcccatttcacaagcttccctc<br>cctgctctgcacacttcttgacactgaatctgtgggttttatttatcaacagtgttgtaaaattatctgtctacattcctaagtagaaaatt<font color="green"><u>GCCTTCTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGCAGGAGAATGGT<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAG</font><font color="green"><u>GCCTTCTC</u></font>taggtcaaggtcagttttttacctgttgtttccctgactagcacaatacttctatacac<br>tcaatgttaataactaaatagatcataaaactaattttggtattaataatgcactaatccacagtgacaaactatctgtcccagaagttattcgtaacag<br>tataaatttaatcatatatttgtcatttggaatactgattcctttataaaataagcccaaaaaataatacctcgtttcttcactgatgaaggaggaagga<br>agcttgctggcatggacctcagatgagaattgtcagtggcttctaagaatggttctttcaggtgatctgcaataaatcccaccaacccaaagaaatgggt<br>cataacacttcaatttcaaagtatcacatattt	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	484;NA	141;NA	NA;NA	intron:SQLE:NM:003129:7/11
0	chr8	15001280	15001586	1000312	0	-	pAlu8-14776369;3648;Ya5ACA1785; RIP_Alu_chr8_015_01	TCCTCTCACCCAGAAAGCAG	ATTAACCCATCTCCTTGGGG	SINE	Alu	Ya5	aaaaaagtgaatgtcaacctgctaagacaacaaactgtatagaactacttctgagcctgttgcatgaaaagccttcattaaactaggaaacgttaatatt<br>tgaggatatgcaacaataataggtcaacctgaggtacaaaaataacacagaagctgtagagctttgttgaaattgtgtagcatataacaaagatatatag<br>gatcaagtacattaaaaatgcataagaaatattttaagtctgaacctttgccaagaactgtgatatcatttgtggaatgcaattttctgattctgtatca<br>ccttttattacaccaacttcaaaatgccagaaactgatgtttcctctcacccagaaagcagaaatgaaacagatattttgctaagtt<font color="green"><u>AAGGTAATAATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGGTAATAATAG</u></font>attgaccacagataaataagcaattacaataactaaattataaggaaacactaccttactttagagatgcaaaaactgag<br>ccccaaggagatgggttaattctcctagtgtcagacatagtgagactaggagatgtgttaatagatgggttaaacccatgtgtttttgtaagccatggtt<br>ttcagaaagaagtaacttaaataaaacctaaatggtacttaactaatttccaatgatctggctattttcaaaacactttggaaaactggagcatgagaat<br>attataaatgcaaaatgtttctttgaaattctcttaaatacatttcattttttttcctgtgagagctactttgcttgagccttatagaaataattctgct<br>tttgagt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	479	159	NA	intergenic
0	chr9	21918070	21918371	1000313	0	+	Ya5NBC184; RIP_Alu_chr9_021_01	CTTGGATAGAGCTGGAGGTCATTA	ACCCAAGCAGTTTATACTGTACCC	SINE	Alu	Ya5	aaagtaatatgcagattccttaaagaactaaaagtagaactaccattcaatccagtaatcccactactgagtatctacccaaaggaaaagaagtcatata<br>aaaaagacacatgtacatgtatgtttatagcagcacaattagcaaatgcaagaatatggaaccaatctaagtgcccatcgaccgagttgataataaaaat<br>atggtatatatgtatatgccatggaatactactgagctataaaaaggaacaataataatgtcttttgcggcaacttggatagagctggaggtcattattg<br>taagtgaagtaactcaggaatggaaaacccaatattgtatgttttcacttacaagtggaacttagctataaggatgcaaaggcat<font color="green"><u>AAGAGTGATTAATGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTGATTAATGG</u></font>actttgggggctcgatgggggaggtttggaggggttaagggataagagaatattgggtacagtataaactgcttgggtgacag<br>gcacactaaaatttcagaaattagcactaaagaacttacccatttaaccaaaaaccatctgtacccccaaaaactattgaaattaaaaaaaaattgtgat<br>tgatgtggtttcgctgcatcctcgcccaaatctcatttgtattttagccccaataatccccacatgtcatggaagggacctggtggcaggtaattgaatc<br>atggaggtgggtctttctcgtgctgttctcgtgatagtgaataaatctcacaagatctgatggttttataaaggggagttcccctgcacatgccctcttt<br>gc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	522	205	NA	intergenic
0	chr9	26512939	26513242	1000314	0	-	Ya5ACA1861; RIP_Alu_chr9_026_01	TATTTCCACCAAGAGGGAGC	GGCTCGGTTGGTTGTTTTAG	SINE	Alu	Ya5	cttctgagaagtagttcgttgcttcatgttgataactcaattttgttctcaattcaaagccttccagtcgatatattttaatttctttttctctttttca<br>aacactttagctaactggagtcttgttttatccctagagaacaacttcaggtgataggtagatggcatggatacctgctgttagctttgtataagaagac<br>aacagaaatgggatcactgtgtatgcatgcccaaggtgaaatagatatcaaagtcagtttcaaatatttccaccaagagggagcagaaggagtagaaaag<br>ctatccatacaataaaaagaagaagaaaaggaaaggaaaaaaaaaaaaaaggagcacaacaatttccggtaaagttaatagaaattttt<font color="green"><u>AAAATGCTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATGCTTGA</u></font>atatatgtttctaaaacaaccaaccgagcctgtgaatttagataaacatgctcagatctcttaatgcccatgctggttgtgcatg<br>ttaggcaacttgcttccacctgtaaaccaaaattgtgaatctgaccatttcttaaaatatcagatacctgttaggttaaaaaaaaaaacaacctcacaaa<br>aattttacttttgaattctaagccaggatgaaatttaatcgcagttataaatcctccaagcaaggatttgtctggaattgccaacatcacccctagttca<br>gcaatgcaaatgacactgctataatataagaaataagaaagctttcagtatgttgtctaagaacttgagcacattgaaagtgatttatgagccagcagac<br>taaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	481	166	NA	intergenic
0	chr4	107419800	107420096	1000315	0	-	Ya5ACA1145; RIP_Alu_chr4_107_01	GGAGGTTTGAGAACTGACCG	CCAATCAAGCTTTTCTCCCA	SINE	Alu	Ya5	caggagttgaatatgaggcatgttgagtctaagagatattgctggatacaggaatatcaggtctggacaaaagatggtcctagaggtatgactatggaaa<br>taattaatatacggataatatttaacactgtgagtataaagaggaaaacagaaagaacataatatttcaaaattaagaagtcaagaagaggattcagcca<br>agaagactgagaagtagcaaccaggaagatggaaagaaaacaaaaagaatatgataccttggaaaccaagtgaagaaagtttattaagaaagaggaagtg<br>atcaaatgtgtcaaatgatgctgaccagccaagtaagaggaggtttgagaactgaccgtcagatcatggaggttattggtgaccttaagaagagcatttt<br><font color="green"><u></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u></u></font>gcc<br>gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaa<br>accccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaa<br>cccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaa<br>aaaaaaaagaagagcattttttttttttttactcaactgggagaaaagcttgattggatcagattaagagaaagggagaagaattacagacgaggaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	719	400	NA	intergenic
0	chr13	39499638	39499639	1000316	0	+	HS2.25; RIP_Alu_chr13_038_02	CAGCTAAGAGATGGAATCAACC	ATCCATTAACCAGCCTCTCC	SINE	Alu	Ya5	agttttctcaaaaactaaaacagcagcaacaacaacaaacttaaaatgaactgccatatgaccctgcaatcccactaccagacatttaactgatagaaag<br>gaaattagtacatcaaagggccacctgcatccccacgtgtgttgtagcactatttacgacagctaagagatggaatcaacctaaatgttcatcgaaagac<br>aaatggatcaagaaaatgttgtatatacaaaatgaaacactattcagccataaaatgaaataaaatcctgtcatttgcagcaacatggacaagtctggag<br>gacattatgttaagggcaggcacagaaaggtaaatactgtgtgttctctctcatatgtgggagcttaaaaaaaaattagctcat<font color="green"><u>GAAAGTAGAGAGTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTAGAGAGTTGA</u></font>attgtaggtattagaggctgggaaaggtagtgggcaggagagga<br>gaggctggttaatggatacaaaattatagctgaggtaggaggaatgagttttggtgttctgtggcattgcagggtggatatggttaactatgatttattg<br>catattttcaaaaagctagaagagaggattttgaacattcacaacacaaagaaatgttaagtatttgaagtggtaaatatgctaattagcctgatttgaa<br>cattacacattgtatatatgtatcaagatattactcactctgtattccataaatatgtgtatatgtatcaattaaaagcaaaagaaaaaatatgtatccc<br>ataaaacaatagaatatgggccaaccttaatgatttgctt	Other	<UL><LI>Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL, Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9360633">PMID: 9360633</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	66135721	66136043	1000317	0	+	HS4.14; RIP_Alu_chr1_065_01	AAGAGAAGATCAGTAGG	TATGGCTCAGAATACAG	SINE	Alu	Ya5	tgtgaactctaattaaaagaaagttaaattgcctataataatatgagacagagattgtagggcaaagaatattaccagggataaagagagaaatgccata<br>ataataaggacataaactccttaagaggatataacaattctgaatatgtatatgcctaaaaccagcttcaaaatacttgaagaaaaatggatagaattgc<br>atggagaaatagacaaatccacaattatatatgaagcactaataatcatttccaataattgataaaacacataaagagaagatcagtaggtatataaaat<br>atttaacatcatcaagcaactattcataattacatttataaaagactccacccaaacagcagaatatgcattttaaaggatgcacataaaac<font color="green"><u>ATTCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTGCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATTCACCA</u></font>atatgggctgtattctgagccataaaacaaatttcaatacatttaaaagaattcaaatcatacaaagca<br>agttctttttattcaatgggattaaactacattccaatcaccaaaaaaatggaaatttcccaaatacataaaaacaacatagtacggttataaataactc<br>atggacaaagatgaaatcaatagaaaaaatgtaaaatattttaactgaattaaagtgaaaacatagtatatcaaaacttgtgagatgtagttaaagtact<br>acttagcaggaaattgacggcattacgtatttaaattagaaaaggaagaagctgtcaaataaatgacctcatcttcaatctgaaagaaactacaagagca<br>catgaaatatgaagtatgctgaa	UCSC	<UL><LI>Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL, Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9360633">PMID: 9360633</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr19	22768158	22768470	1000318	0	-	Yb8Sb23467;Yb8AC1805;Sb19.3; RIP_Alu_chr19_022_01	TCTAGGCCCAGATTTATGGTAACTG	AAGCACAATTGGTTATTTTCTGAC	SINE	Alu	Yb8	tcaatctaaccgaactaatatttagtgagaggttaatataaactaggcattggtgtatagatttgacaagatgaaaatttcaccctcaagtagatcccat<br>agttatcagaagacaaaaacataaaaataactgtaatattgagtggtatattccaatctagttttaaacattgtattggtgctaaggaagttagaaaaac<br>aaaccagacacaaaatctgcccacaagtgcttgtaatttacttgaagaacttaattctaacatagtttcatcaggtaattcaggtaaatattcactctag<br>gcccagatttatggtaactgataattattgataatttctttagatttgttgatattctacttgatgaaacatccaaattttactttatgt<font color="green"><u>AAATGTGGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAATGTGGCC</u></font>aaaagtgtcagaaaataaccaattgtgctttttataaaacaacaatgaacaacgcttgactaaagccaccacacaga<br>gcgactatcattatgggtaggttgtctttgaattttaaggtattaatcacagaagaggaaactcagtcctgagaattgcctattgggtggttaatcattt<br>ctgttagttacattttgactaatcatccatccatccatccatccatccatccatccatccatccatccatccatccatttatccatccatccagccagcc<br>agccagccagctaatatcccatcccactccacaggaatatggtgggcatctcaatattagctgtaagctgaagctggctcatataggcttctgagggacg<br>attgttaaatttc	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, Carrano AV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID: 9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	494	171	NA	intergenic
0	chr19	51860646	51860647	1000319	0	-	Sb19.10; RIP_Alu_chr19_056_02	GCCAAGAAATAAAATAGCCCTCC	TGGGATTACAGGCATAAGCCAACAT	SINE	Alu	Yb8	ctcacgcctgtaatcccctgcctttgagaggccgaggtgggtggatcaccagagatcgggagttcgagaccagcctggccaacatagtgaaaccctgtct<br>ctattaaaaatacaaaaaattagctgggcgtggtggtgggcacctgtaatcacagctactcaggaggctgaggcaggagaatcgcttgaactggggaggc<br>agaggttgcaatgagctgagatcatgccactgctctccatcctggacaacagagcaagactccatctcaaaaaaaaaaaaaaaaagaaagaaagaaaaaa<br>aggattgtggtgggccaagaaataaaatagccctccaaaacagccaggtttcaatccctggcacctgagaaggggaaatcactt<font color="green"><u>AGAAACAGGGTCTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGC301GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAACAGGGTCTTTG</u></font>caggctggccatgttggcttatgcctgtaatcccagcactttgggaggccgaggagagcagatcacc<br>tgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcgtggtgatgcatgcctgtaatc<br>ccagctacttgggaggctgaggcaggcaaattgcttgaacccgggaggcagaggttgcagtgagccgagatttcaccactgtactccagcctgggcgaca<br>gagcgagagcccatctaaaaaaaaaaaaaaaagaaattagaaacagggtctttgcagatgtgattaaattaagcatcttgagatgggggcattatcctgg<br>attatttaggtgggccc	Other	<UL><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, Carrano AV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID: 9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ETFB:NM:001985:1/6
0	chr19	57111561	57111864	1000320	0	-	Sb19.12; RIP_Alu_chr19_061_01	TTAACATCCCTGCAACCCATC	GATTATAGTCACCCTGTTGTGC	SINE	Alu	Yb8	aacttccacccaggggctctcagagccagattcgcctagagaaatgcatcttgattcaattctcctccagttctcctgacaagctcaggataaagtctca<br>agtggagagatatcttaacatccctgcaacccatcactcgccccttgaaacaaaagaaaagcaggagaataagatcctgtgatttgcaacaacatggata<br>aaactggaggtcattatgttaagtgaaataagccaggcatagaaagacaaactttgcaagttctcacttgtgtgagctaaaaattaaaacaaactcatgg<br>agatagagactagaatgatgaagaaacctgaggctgggaagggtagtggaagggtggggggaatgtggggatggctaattggtatt<font color="green"><u>AAAAAAATACAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAAATACAGAG</u></font>ggttgcagtgagccaagattgcaccactgcactccagcctggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaa<br>caaaccccaaaaaaacaaaaaaacacacacacaaagaatgaataagacctactatttgacagcacaacagggtgactatgatcaataataatttaatgat<br>acatttaaaaataactggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagacc<br>acggtgaaaccccgtctctaccaaaaatacaaaaaattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggaaggagaatg<br>gcat	UCSC	<UL><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, Carrano AV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specific Alu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID: 9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ZNF71:NM:021216:1/3
0	chr1	197011667	197011963	1000321	0	+	FXIIIB; RIP_Alu_chr1_193_01	TCAACTCCATGAGATTTTCAGAAGT	CTGGAAAAAATGTATTCAGGTGAGT	SINE	Alu	HS-1	gctgagagcactgtgttcagttactttcttcaacaactacttattaaatgcctatgtgtcaaacattatgctggaagtgctacaggtgatgaaaatgaac<br>aagaattattacactcattacaaaatagttgtgaaaatgaagtcgaatagcactataatttacgatgtcactgttctacagaacatgagatttaaattaa<br>aataaatttaaaagttgattcatggacctttaactttcagctatgacagaggagattatatcaaaccagcacttctattaagaaccagaaaatctgaaaa<br>acaggaagcatttcgaggtatcagaaaacctccaaggaacttagtcaaggaagtaaggttctggaaaaaatgtattcaggtgagttcaaca<font color="green"><u>TCTATGTGA<br></u></font><font color="red">GGCTGGGCGTGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACAT<br>GGTGAAACCCCATCTCTACAAAAAAAAAAAAAAAATAGCCGGGCATGGTGGCATGCACCTGTAATCCCAGCTACTCGGGAAAGCTGAGGCAGAAGAATCT<br>CTTGAACCTAGAAGGTGGAGGTTGCAGTGAGCAGGGATCGCACCACTGCACTCCAGCCTGGGCAACAAAAGGAGACTGTCTAAAAAAAAAAAAAAAT</font><font color="green"><u>TCT<br>ATGTGC</u></font>catttttttctcttgaggtgtttgttgactctaagtctgacctgagaggttagatgatagagaatggtaagcttaggcatacagccagcagaac<br>ttctgaaaatctcatggagttgaagatagaaaaatgagaatttcggtaaaccaaagcagccaggacttgaagaataaagaatttagaaggataggaagtg<br>tagagatatgagtttgaggctctgcactagcttttccctaaggtactgcttatccttgacttgtatagaggcataggatgagaagccaagcagaaagtaa<br>ataaaaagttacagtgggcatttggcagtctcccagtaatatcagagacagtcaaggagaaaaagctttaatacacacaacaaaccctctgtaaaga	UCSC	<UL><LI>Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8576959">PMID: 8576959</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:F13B:NM:001994:10/12
0	chr3	178111046	178111047	1000322	0	+	D1; RIP_Alu_chr3_179_01	TGCTGATGCCCAGGGTTAGTAAA	TTTCTGCTATGCTCTTCCCTCTC	SINE	Alu	NA	attcagttaacattactcaaattggcaaaaaaaactagtcatgcacaagacaattattactaatgtgtttaaacatccttaaatacgttctgtttcactt<br>ctttcactttatttggataatcaactccactttaattttccaatactgctaatcagggttcaatccccaaaagcaagtaaaactgagatgtcccttaatt<br>atcaagagatcctactcttcagatctgctgatgcccagggttagtaaaaaatgtgtcagtactcagattagcaatacttgtggtttattttacataaaat<br>acttctccactggtatttcttcattgattgatatatgatagctgatatcagtgtacatcaatccaaaatatgctgtggtagatttttgctta<font color="green"><u>AAAAATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA<br>AAATAAAAAAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGG</u></font>gaagaagtagatttcggcaggccaatgctgcccctgagaataaaaagaaaaaaagccacataa<br>catatggtaatcatctgtttgaagtcttcacactgctacaacagaaaagagaaatggaaaaaccataactccagagagggaagagcatagcagaaataca<br>cagaattctgtagttatatttacccttgtggcttttggcaattttgtgcatgggccaaaggatgaatgttatatgtgtagattaaatgatatccagatac<br>ctggtaaaacattatttcttggtgtgtctgtgagggtgtttctggaagagattcacatttgaatcagtagactgagcaaagaatatccatcctcaccaat<br>gtgggcagcatcatgcaatccattgatgg	Other	<UL><LI>Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8576959">PMID: 8576959</a>.</LI><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr6	12099422	12099698	1000323	0	-	HSC37; RIP_Alu_chr6_012_03	CTACATGATGTGGGGTGGGCCTGCT	CTTTGGGAGTCCAGCCCACTGTGAA	SINE	Alu	Ya8	aaagcaatctagattacatatctaaccacacttaagaaatcaaagcaataataacgcactgtttacaaatcctgcctgttaagtaaaggaatccatcctt<br>tctgacacctctaccatccatcatcgattcaataaacatttgtcaaatgcctactacatgcactaagaactgtagtaagtgctgtgctatgactgtgggc<br>aaaactgtataggggaagatgtgaggagaccccaggcagaggtgagagggtgagggtgtggagaagtgagttgcatctatgttaccacgttttttcttca<br>catataagggtcatgttaaacagttactaaatggctaactacatgatgtggggtgggcctgctgaaataaacacactcctccaggcc<font color="green"><u>AAAAACTCAGTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAACTCAGTGA</u></font>catttccctc<br>tggctcctgctccttcacagtgggctggactcccaaagcgtctgctcctcgggctcctgcagtccacctcccaccgcagatcaggccatgcatgaatgtt<br>actacatacatttgttttcattgcaatgcttttaagtcctcttcttgcccttcccactcatccacagaatcttatttgctacttccaacgcttttcttaa<br>ataaaataattttataccccattgcttggtggtcagggaaaaattctaagctacatccttcaaagtttgataaatttcctgcatatagcatagctccaca<br>aaataccctttgcacagtgaagcaataaaagaacaccatattgttggttaaatactttgttatctccatgctttgct	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:HIVEP1:NM:002114:3/9
0	chr1	114385442	114385732	1000324	0	+	PV30B; RIP_Alu_chr1_114_01	GGAAAAGAGTATGGCTGTCT	AACCCAGAAGTGGAATTACA	SINE	Alu	Ya8	aatcccagcactttgggaggccgaggccggcggatcacgaagtcaagagattgagaccatcctggctaacatggtgaaaccccatctctactaaaaatac<br>aaaaattatctgggcgtggtggcatgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcattga<br>gccaagattgcgccactgcactccagcctggcaacagagcgagactgtgctcaaaagacaaacaaataaacaaaaaacagaaaataaaaagtgttggcca<br>ggatgtagagaaattggaatccttgtgtactgttggtgggaatgtaaaatggcacagctgctatggaaaagagtatggctgttct<font color="green"><u>AAAAGAAAACTAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAA<br>CTAAAC</u></font>atagaattaccacatgtaattccacttctgggttatacccaaagtaattaaaagcagggatacaaatatatatttgtatacccatggtcatcac<br>agcattacagcagccaaaaagtggaaggaactcaagtatccattgatggatgaatggataaacaaaatgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtg<br>tataaacatatacaatggaatattattcagccttaatgagtaagaaaattgtgacacgttacaacatggatgaaccttgaggacattacgctaagtgaaa<br>taagccagacacaaaaggacaaatactatatgattccacccatatcaggtacctacagtagtcaaattcatagagacagaaagtagaagga	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PTPN22:NM:012411:11/16
0	chr12	13017649	13017948	1000325	0	+	PV1C; RIP_Alu_chr12_012_01	TAAGCCCCATAAGGAATGAGACTG	TGTTAGGTACTTTGCTTGGTGCTG	SINE	Alu	Ya8	gatctttggagaaaggcatggcctggcaggctctgcatggtgccacaggcctatctagctcctgtctctcctgcatttccttccctactggctgctttca<br>ctctttaagctcctgcccaccccagggactttgcacatgctattttttctacctcctctgctcttctgccctctttatttaggcaacttctactcatcct<br>tcagatcccaggtcaagcatatccttcttcagggaaggtttgcttgacatcgctgatggggtcaaatcctccttttagaggctatcaccacacgctgcat<br>ctgtattttataacacttgtcacagtattatatttgtctggttctttgattgatatctattactctcactagattataagccccat<font color="green"><u>AAGGAATGAGACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGGAATGAGACTG</u></font>aatctatttttactcatcattgtgttttcagcaccaagcaaagtacctaacacataataggcactcaatgaacatttgtggaataa<br>actgaggaataagtaaagacagaagatctaaaacatgaagggggctacagataggaaagggctggggagggaagaggagatattcaagagagggaaacga<br>aaccaatgaggctacttgtaagtgatcttgcagtgtaaatgagctgaacacaaacaaacccccaaagcggcagtccatagacccatagaaatggtgacag<br>tgcctgctgagttggttagcctaccccacacttctattcattgctaaaggcatctccacatatagataaccgctcactaaattttgcttttgctcaggaa<br>	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr5	9777994	9778290	1000326	0	-	A6; RIP_Alu_chr5_009_01	ACTACTCACCAGCAAAACACCTG	GCAGCTATAGCCTTATGAAAACA	SINE	Alu	Yb8	atgaatgtcactgaactaaataatcgattgtcaatgtagacaaaacaaccttgtattggaagaagatgccatctaggactttccaagctagagagaagac<br>aattcctggcttcaaagctttgggagacagattgattatcttgttaggggctaatgcagctggtaactttaagttgaagccagggctcatttaccatttt<br>gaaatcctagggcccttaacaattatgctaaatctactctgcctgctctgtaaatgaaacaacaaagcctgaatgacagcacatctgtttacaacatggt<br>ttattgaatattttaagcccaccatcgagatctactgtttaggaaaaaaagaaacttttttcagaatattactactcaccagc<font color="green"><u>AAAACACCTGGCCTCCC<br></u></font><font color="red">GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT<br>GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAA<br>ACACCTGGCCTCCC</u></font>aaaagctctgatggagatgtggagatgtacaaggagactaatgtcttcatgcctgctaacacagcatcaatctgcagcccatggat<br>caaagggtaattttgactttcaagtcttattatttaagaaatgttttcataaggctatagctgctatagatagtgattactgtgatggatctgggcaaag<br>caaattcgaagccttctggaaaggattcacccatctagatgtcattaagaacacttgtgattcatggaaagaggttaaagtatcaacattaactggagtt<br>ttgaagttgattccaaaactcatggatgactttgagggattcaaggcttcagcgaaggaagtaatggcagatatggtgaaaatagtgggagaactgg	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:LOC285692:NR:027112:4/13
0	chr8	42039907	42039908	1000327	0	+	TPA25;1104685157154; RIP_Alu_chr8_042_01	GTAAGAGTTCCGTAACAGGACAGCT;NA	CCCCACCCTAGGAGAACTTCTCTTT;NA	SINE	Alu	Ya8	gtggcaccagggcttggcatccccatcaggattcctaaatgataagagagtttaaggtttcctttttatcttcttattttttaatttttgtagagatggg<br>gtcttgccatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtgctgggattacaggcatgcaccaccac<br>accaggccaggagtttaagattttcaatcccattttcagccacatcacaggccatgtaagagtagaaggagactcagtcaaccaatgaaaaccactgagc<br>tgggagggaggacaccgagttcatcttgaccttgcagcacacccccaccctaggagaacttctctttaactttgttacccagtcagtaat<font color="green"><u>GTAGTGTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>GTAGTGTTCT</u></font>aatctcatagggttgtcagacagaactgtgagctgtcctgttacggaactcttacaaatcattgcaataaagatgtcaggagaacagct<br>gaggactaaatggttacaggccaggacccttaacttgggatttaggttggaaaactggtagaccttgcttttcacaatatgtgttattctagcaagtgaa<br>gaggttggattagataatatccatgggtgcttcccacgcactgggtctgtcatgcaacttgagacattggatcttcccccgtctcacaccctaatcccac<br>gttctgccaagacctgaaccccccacccctgtgctacctaccggcagtaattatgtttgcccaggcccagtgcctgggcactggggttctgtgctgtgta<br>a	Other;Venter	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA;NA	NA;NA	NA;NA	NA;NA	Myeloproliferative disorders;NA	intron:PLAT:NM:000930:8/14
0	chr19	40099383	40099679	1000328	0	+	HSC4N5; RIP_Alu_chr19_044_01	CATCCTTGGCAACTAGTTCCACTCI	ATCATAGACACGGTGTCCTGATCAI	SINE	Alu	Ya8	tccaactcaacagcaggactgggtgaacacatagaaactgggaagctgtctccttcaatacctcaccttcccatgcatgacattaatttcctaaaatcag<br>gagagtctcatggttctgggacttaataaatggtgattggctttcaccaaagaaagcctttcaaaaggctcatggagaaggtgcacagcatcacaggact<br>tacctttgaatggcagacagtgttacttctaaggttttacattgatcaaggtgagtcatacagacggccctaatcaaaaggagaggactccacaagctgt<br>ggttattgtgactgtagtcatgaggggccatccttggcaactagttccactcagaactagttcccacataccgaaaacactaaccatgt<font color="green"><u>AAGGAATCTCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>GAATCTCT</u></font>gaaggcattacaattgcaaaaacaggctcagagtaaagtgcaatatcttatctgatcaggacaccgtgtctatgatgtgactacaaattatc<br>acttgcaatcccctgcaacatgtgcaccaagggggcacattatctgctttatactaatcaaagaagactgaacgagacaggaaaagtgcaatgaacacat<br>atattttagatgggcaaaaaaaaaaaaaaaaaaaaatagacagcagtcactaatccatatttttgctgaaaccaaccagaaaactatttacattttctct<br>gggaatgtttttctgtagcacttgtccccaccctccattctcagtttcttggagttcctaccaagacggcagaatgacagcccttttcccactataa	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr11	29748286	29748603	1000329	0	+	5F4; RIP_Alu_chr11_029_01	CAAATTTTCCTTCAAGAAAATAAAAC	ACATGTATGGTATGTAAAAATTTAG	SINE	Alu	Yb8	tctagtccacaggaagacctgaaccactgtcgccttcacataggttaactcggaaggcaaaggagctttgcctaagctggtggaagctatcaggacaaat<br>tgcaatgacagatacaatgagatccaccgtcactggggaagcaatgtcctgggttcccagatctgtggctcacattctcaagctcaaaaaggcaaagact<br>aaagaacttgccactaaagtgggttaaatgtatgctgttgagttttctctacataaaaaaaattaaactacaaattttccttcaagaaaataaaacataa<br>attattgtttttataaattacccagtttaaggtattctgctatagtgggacaaacaaactaaaacaaaatatgcctactatt<font color="green"><u>AGAAAATACTCTTTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATACTCTTTTTTG</u></font>ttgcatatacatgtagtccagttgaaatatgttacaaagagaataagtgtttcctaaattttca<br>cataccatacatgttagtttgccatacacataagatccatctatagatctccttaatttccttaataaattcagaagaactttactgaagtacatatttg<br>gtgccactatggatatcaaataatataatgctgcatgatgatgctgcataactcctacttattgaacatttataatgtaccaggtagtatgctaagtatt<br>ttgcacataatttaactcttgcaccaacactggaaagtaggtagttcaccccatttttgcaagaaaactgaatcttagtaaaccttagtaaagaaagtga<br>tacagaatagaattttaa	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr14	81092527	81092837	1000330	0	+	A3; RIP_Alu_chr14_080_01	CCCCAAAGATAGTCAGGTTCTAA	CCTCCTCCATTCTCACTCAATC	SINE	Alu	Yb8	tccttctttcctctttttcttttttcttccttatttcttttttctcccttctttcttttttctctttctttcctttctttctctctttcttctttctttt<br>tgttactcttgtacagaagaaatttttaccatatcagattagttctctcattcatgccaatatcaagtgagcctgtattactctttaaaaagtcataaaa<br>tactaaatggtaacactggtatattgaataatcagccccaaagatagtcaggttctaattcctggaatatgtgaatacataactttacaaggcaaaagag<br>actttgcagattttaaggatcttgagatgaaaaaattagcatgggttattcaggagatccctaaatgtaatcacaattgtccttatt<font color="green"><u>AAGAGTGAGACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGTGAGACAG</u></font>gggagacttgaccacatagaggaaaatgcaatgtagtgacagaagcagagattggagtgagaatggaggaaggggc<br>cacaacccaaggaacatagacaaccactagaagctgaaaagggcaggagaaagaattctcccctcagagctttcagaagcaaccaatcctgccaacacct<br>taactttaggccagtgaagccaatttcagattcctgacttcaagaaaataaacctagaccaagatggtgaaactccgtctctactaaaagtacaaaaatt<br>agctagatgtggtggcgggcacctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaaga<br>tggtgcaccat	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP,Stern JD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID: 7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:C14orf145:NM:152446:18/24
0	chr10	4634812	4635120	1000331	0	+	238920; RIP_Alu_chr10_004_01	NA	NA	SINE	Alu	Ya5	tgttgcattttggcaaatgatatatctgcatctaataagattatcacatgaatcttctcttttgttatgtcaagatggtggatttcattgctttatgaac<br>aaacacctttacattcctgagataaaggccatttggccatgacacatttttatttttacaaattgctggatttcatgttccaatttaacgttttgctact<br>tatctgtttaaactctatcggtctcagttttgacctctgtaaaatgcattaattgggctttaacaatggtatttttgtaaaacaaaaatttactttacaa<br>ttatttgaaatataatttttctatggtcttttccagttttaaattaattagtttgaactatataatattgatattcaatctctattgaac<font color="green"><u>AAGAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAAAAGA</u></font>ataatttcatacagttcagcttaatagattaattctaagattttattgcagaaaatctctttctaccttgaaaacaggagg<br>taattttatgaacttgatttttaatcttagctggagtaaaattgtggtagaacatacactagctttgtaatcttgtgcatgttactgtataacgatcagt<br>ttatttgttcataaaatagggatagatagaatatctactttgtgggatagttgtcaggaagtgaactccctggcacatgccttacacatagtaagcactc<br>aggaaatcctaactatcttttatattatcattatgattatgaagtgctcttgtcctttagaatatcctggacaagatggttaatgggctgtacatctatt<br>attcaggta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	20132017	20132018	1000332	0	+	16184; RIP_Alu_chr10_020_02	NA	NA	SINE	Alu	Ya5	ggtgaatttgaaggcagctaaacacattgcaaatttagaagaaggatgtaggtcttaacttgtggatagacttttcctcgtatatgggttaatgaatatc<br>cttctctctcttgtgaattcttattaatataggccataaatggagctttcttttttgctctataaagccttcttatcttttgacgtcatgtttatattat<br>ctgatatgatgtaaacaaatctgacaggagtaactaaaaaaagcagtgcacagctaaatgtattcagtgtttattggctgatatgttttccccacatagc<br>ttcaatttaaaaatatatttttatcctttattacatatcctccttcttagtaatgcttttaacttatgtcatatttttttttctata<font color="green"><u>AAAATTTACCGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTACCGGA</u></font>acaacgatctgccactgtatctacagcattttggtttcccaccaaggtagttttaaatcacatttagctca<br>attgacttatttatgaatactgtttgaaaacagtgtttatgtggtaaacatgcttttcattgctgcattttaaaagataaatgcaatggaatacttattt<br>ttttgtttcacaatttaaagctaaggtattaatttgataattattcaatgtcaatttatccaatatcgatttattctcatgttctttatttgtaaagttt<br>ttctgggtttccaaagagtctacccctgttatcgtaggattcctccataaggacaccatccacgggtaccactgagagcttctggctgcattaagatatt<br>ttctagtgaagaagaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PLXDC2:NM:032812:1/14	
0	chr10	25035192	25035282	1000333	0	+	12468; RIP_Alu_chr10_025_01	NA	NA	SINE	Alu	Y	gattgaaaccattctggctaacacggcgaaactttgtctctactaaaaatacaaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctact<br>caggaggctgaggcaggagaatgacgtgaaggcgggaggcggagcttgcagtgagccgagatcgtgccgctgcagtccatcgtgggcgacagagcaagac<br>tccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaactgaaacaggggctgagcatggtcgctcatgcctgtaatcccagcactttgggaggctaaggtgg<br>gtgattgcctgagtccaggggttcaagaccagcctgagcaacatagcaaggcatccgtctctaaaaagaaaaaaaaaaaaaaactgaagcagct<font color="green"><u>AAAAAA<br></u></font><font color="red">AGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAA</u></font>tgt<br>atgtgggaagtggctggtacaggagaaagttgggagcattaagcagatgaggtgagggggagaatggcctctataacacgctgttaccatcacttagtag<br>gtatgggattttgaggtaaccccacaaaggctaattcctcctaaaatccgtgtctgcagccttgctaacagcatgtgacaaacagcactgagcatagcca<br>gctgtagatgatacatctgagagtcttttgcaaacagatattctttttcagtataaatataattcttgattatagcaatgtataaaaatatacgatcaca<br>atctgtaaacaaaacaaagcaacaacaacaaaaattcacatgcatttggatggttactagcaaaaaaaacaaaaaacccagaaaataacac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	25098090	25098419	1000334	0	-	238040; RIP_Alu_chr10_025_02	NA	NA	SINE	Alu	Ya5	ataaaaataaaaaaaattttaaagccattgcacagttttctctgctgctggaataaatggatcttctgctagctctaattgccctagtaaaagaatatta<br>tctttgaccactgatcctaagaacccaaattccctgcaattcctttgctaaaggaaatccctgtcttctctccatttctggcccctgaatgctatttttc<br>ttacaaccaacaaagaagagtataaaggtgtttatggaaagagcatccctgtgagcccccttttcctgggacagttattcttttcccaaacagagaaggg<br>ttcttttaataatcaagttaccgatttattctaaactctcccctcccaactgatatttgaaggttggaatggcattaaaaataacatcacat<font color="green"><u>AGAAAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGCT</u></font>aattatgttccacttcccacccgtccttcttgccaagtaatcttgggttttgccaccttgtt<br>tttttattttttgaacattaaaaaacagaagaagacgagggaggcagcagagaatgggaacagattaggctttaaaatagaactgtcaagatggttcccc<br>gcaggctctgttctgatctagcaattggtaacttcagatccacttgctttcacaagcgtctggatagcagtagattgagcagcaattaagggatagagca<br>ttaagccgaatgaacttacttttctagcattaactatggcttttcatggtttccagtgaaaaataaatttaaacaaacttataaaatatttacgtgaaca<br>aacaacatgtgaaaaaacaaatttatagaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	29102529	29102530	1000335	0	+	16220; RIP_Alu_chr10_029_01	NA	NA	SINE	Alu	Ya5	ggcccacgcttctcattacaaaaatatgttctgacactctgagtacttgtggctgggctggagaggcattgggccctgggatctcttgccagggagacaa<br>cccccctgcaactttgtgctaggtaatcttctgtcccctcttgtgtctcttctttccagtctggaccttcaaattggagggggtgaggagaaccctaaag<br>cccaggcatcgatggggaattctggagacaaaagctaattaaagttcatttcaaacctgtggggagaaaaattctagacataaacctaatgtaaagaaac<br>acataaaattttattggaagacaaaagaaaagtggaatgagcacacatatcatgtttttggatggtaagaataaaaattgtgaaag<font color="green"><u>AATAGATGATTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATAGATGATTTAG</u></font>attcaatgcaacctcatgaaaaattacaaagggattgttttagtccattttatgttgctataacaacaccacagactgggtaatt<br>tataataagcagaaatttgtttggctcatagttctggaggctgggaagtccaagagcatggtgccagcatttggtgagagccttggtgctgcatcatccc<br>atggcaggagttgataggacaagagagagggctagagtaagacagggaaggtgatccaaatgtattcttttatcaggaatccactcttgagataactaac<br>ccactcctgcaataacttcattaattcatttatgtagtgccctcctgacctaatcacctcttaaaggtctcatctctcaacattgttgcactgggcttta<br>a	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	33492655	33492929	1000336	0	-	Yb8NBC157;265; RIP_Alu_chr10_033_01	TATGGTTCTCAGCCATCACG	ATTCTTCCCCAAAGGGAGTC	SINE	Alu	Yb8	aaagtctggattgcaggcctgagtggcatgtatgttatttgcacttggtgacttcttagttattactggtgtgtatctttgggccgttgaagaagttgaa<br>acttggctctgtttctccatgtgccgtaactctgcttggtgtttcagcaccattcagtgtcaaatttttactaagaaagcagcagttactgacacattcc<br>tactggcgagaagagaacaggccccagccaccaacatcttgtatggttctcagccatcacgagaactatccattatctcaagtcttgtaaagtgaaacgt<br>aatgccaaaaactgtaaaatattaaacagattgcaaaaatgagtaacaggctaaaaaaaatatctgaacgaaatttaaaggacttc<font color="green"><u>AAAAGCAGTCTTTG<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCAGTCTTTG</u></font>attaatattgg<br>atacctttcaactgcaaattcaaagatatgggaatacctgtgaacagtggaatgcagtcctatgagagttcatgtaaaatgaccccgggacatctgagac<br>aacttctctcacacacctgccctggagagagggctcacagtttgagaagctacttacagagaaatggaatcactgtttttttagtttttttgtttttttt<br>taaaaaaacactattgcactaaatgtgaacgttgactccctttggggaagaattataatataaacttagcaaacatagtcaatactaagaatataaaaga<br>atttatgacaagtgagtgctctaacaccttgaaaatgaaagggaaaacgtttcaagcaaaatctctgtcttcaaa	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	712	423	NA	intron:NRP1:NM:003873:10/17
0	chr10	34684484	34684793	1000337	0	+	12346; RIP_Alu_chr10_034_01	NA	NA	SINE	Alu	Yb8	tcccatgtagctgggattacaggcacctgccacaatgcccagctaatttttgtatttttcatagagacagggtttcatcatgttggccaggctggtcttg<br>aactcttgacctgaagtgctccacctgcctagacctcccaaagtgctaggattacaggcgtgagccactgcgcccagccgatggttctcatttaaatcag<br>gaggaaatgaaatgatatggatgaaataaaaattgattccaaggtaatgaaacgttttaggtaaatgtttttctactaagaaaataatttaaaaaaagaa<br>atcaccaaagtaatgaaaccgtgaacgaatatagatgaggatcagttaactttatttttgaataacatatacaaggaaataactc<font color="green"><u>AAGAAAAACATCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAAAACATCATC</u></font>atggggaagataatattgtctctctacctatttgtctctatttctacatatcagcaggtagtcaactaagacagg<br>ggttggaggacgagctaattgtcattaatgcccctgattgaaaaacattcaacctagtctaaaaaatagctttgaaagtaagcagtgcaagattcttatt<br>ttaaaaaacttaagccagccatggtggctcacacctgtaatcccagcactttgggaggctgaggccggcggatcacttgagatcaagtgttccagatcaa<br>cctggccaacgtggtgaaaccctgtctctgctaaaaattcaaaaactagccaggcatggtagcatatgcctgtagtcccagcttctaggaaggctgatgc<br>aggagaattg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PARD3:NM:019619:7/25	
0	chr10	47088386	47088703	1000338	0	+	239115;pAlu10-46955146;Ya5ac1982; RIP_Alu_chr10_046_01	GTGTGTGGAGGTGCTTCAGA	GAGTCCTGGAATTCCTGCTG	SINE	Alu	Ya5	ggggtggcaccccagcattcctggctttctggggtccagataggctggcaagagctgtttttgcatccatttgcatcgtgaagactggcattttgatact<br>tcagctgtttgttcctgggagaattctgagcacagattccagaggtcacagtaagccttgcagcttgagctgaaagatgccagagccggagatgtctgct<br>ggcagcaggcagggttcattctggtgacacagcaacagatgcctggcctgggaacccagggatttcacctccaccagtgagaccacggggccactgtggg<br>gtgagggaaggagcgcttggagtcagagctctagaccttggtcaactcttcacctctgtgagagatggtgtgtggaggtgcttcagaagt<font color="green"><u>AAAGAATTCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATTCT</u></font>gtggatgcaaagcagtgggattactgttagatcattagcgcatccagctgaagacaatagatgcagtagtct<br>tggcttacagccctctgcagcaggaattccaggactcacttcctactccatcccttttctctatcactgtgtcttccaccttacatggaaatcagcctgc<br>aagttcctctcctcgatgagatggcaagcgccttgcaggtgaaatccataccatcatggggcttgtgtcttacatgccatggacaggccctggcacaagg<br>agagagctccagggaagttttccatggtgggttgatggtaaaggtgccactcactgctgaatgtttggtgctggacaggagtccagcatgggaagggggc<br>cagggctcaggctcctgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	470	148	NA	downstream:PPYR1:NM:005972
0	chr10	49917171	49917479	1000339	0	+	pAlu10-49809478;239156; RIP_Alu_chr10_049_02	NA	NA	SINE	Alu	Yb8	ccaacttgcaaacactgctcctgtgtgcacttagagatgagctcttgtaagcttggggacttaaagggtcattttgagaataaaatactctaaaaatatc<br>aagtataaaccaaataatgcttagaatgaggaatctatccttacagacccatcatagaaggaagttctagatatagaattatgtgcctctacaaatacca<br>gtgaactatttacatctcttttatgtatgcagccttttaaaagagaagcagcaacaagtgaaaaaaaaacaaacaaacaacaccccccccccccaaacag<br>gctttagtgtgaaagtttgcatttcaacttgacgtctagctgcctgtatgcctttggcccagtttccttacttacctagagagaat<font color="green"><u>AAGAGCACACATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGCACACATCT</u></font>gtctgtgtggctgtaggagagtctgtctgagtcttgtgtataagaccccacagtgctgggcacacactagattgtga<br>acttgtattaatcacatctaaatctgaatcccctttttaaaaaggcttccttattttagtctgtttcagattcttaggggaaccattttcaatagaaact<br>gggctgagtgagtacagtaccttatccacagccagaatcatcaggaagtgatgtgacaggaatgttcacttctatttgttctgaattcagatctgctttg<br>ccacggcatggaggcagaagatctttcaaaggctgaagacagaaatgaagacccaggttccaaaaatgaagggcagcttgctgctgtgcagcctgatgtc<br>ccacatgga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:WDFY4:NM:020945:1/62	
0	chr10	54441210	54441514	1000340	0	-	2730; RIP_Alu_chr10_054_02	GGGAGGCGGAGCTTGCAGTGAG	CAAAGAGTGAACTAGAATCCAGATC	SINE	Alu	Y	cacacaaaaagtaacagaaacaagataaagtcctgaggaggatccaggtgtaggatcccatctttgctgacactaactttgctttcccatgttcaagttc<br>tataattcaataaatttttgagtaatccagttagatctggatttttggtaaatgtatcaaaaatgtttactattacaatataataatgtatatttagaag<br>ataatgaggttgaaagattaactattttcctcaaggacatacatgtagtaagtggcaaagagtgaactagaatccagatctttctgactgtgttgtcttt<br>gatcttaacaaataactgtattgtgaaagctcaaggacagcactgaagttttataaatgggagagacatttcagtgggatgggagttt<font color="green"><u>AAAAGTAGTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTAGTTGA</u></font>gtgtgctcttcccctcctcttttgttttgttttgtttgtttctgagacggagtctcgctctgtcgcccaggctggagtgcagt<br>ggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcgcccgccaccaaa<br>cctggttaattttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtaattcgcgcgcctcggcctc<br>ccaaagtgctgggattacaggcgtgagccaacgcgcccggcctgttttcttttatttatttagtttttcagccccctgtcctctcttacctttcagaaca<br>acttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr10	56517039	56517340	1000341	0	-	10911; RIP_Alu_chr10_056_01	NA	NA	SINE	Alu	Yg6	aaataatataaagcaatgaagggtcttacagtgagtttttcaggcatggctgtattcagagacccaataagacctcctgaggaatctgtttcttttgatg<br>ccttttgcttgcatcccatgatgtttggctttaactctcagtcaatatttgtccatgcagctatatattaaggctgctgacaactcaacctaaattcata<br>attgcaattactaaggaaaggagcccttctctctctctctgtctctctctcggcataaataaaactttaaggaataatctaattggtcttatttaggtct<br>cttacttgtcattgttggtgggcatagcactgtgactaccataaagaaggcaaatgaagtagttttctaaaggaaagccaatttttaag<font color="green"><u>AAGGTAGAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGGTAGAATT</u></font>ctgagcaagccaaaaacaggtgatatagacagaaatttctcatttcttagcagtttggcatacacatgtatgtttctaataaggaca<br>gttacaaattgtccccagctaatagaacacaactatcttaactacaactgaatataccccggctggaagcagaacattcataaagcaaatttttatattt<br>ctcctttatatctcatgctatcaaaagacatttactatcatgttttttgagacatatggtaatccaattgggagcttgcttcataaagccaagcatcctc<br>tgtcttcaaatacaataataggaagtccaaatactaatcacgttaagacacagctccctcctacttaggaatttcatttttattgacataaattgcactg<br>tg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PCDH15:NM:001142768:1/33	
0	chr10	57974634	57974635	1000342	0	+	3538;pAlu10-57867033; RIP_Alu_chr10_057_02	NA	NA	SINE	Alu	Ya5	acccgtgacagtattgtttaaatggtaatgtctgtaaattggttctgagataatttcaagtaagaggtacaatctcagtgatttacaaaacaaaaattta<br>tctgttcttcatgtgaaatccaaggcaggattcttagttgggtagttttcgtacttgctatcatttagataagcctaagggactttgtttcaatagtctc<br>aaaatccattcctaagcaaattattctagttccagttggtacaaatttgtcatagccttcatttctttgatggataatctctttcctcccatgtggggac<br>agtgttactttcatcaggctctgccattacctatcaattataatctagaaccaatgaagggagacaggggcatcttttcaggggaat<font color="green"><u>AAGAATTTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAACCCCGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AAGAATTTTTTT<br>T</u></font>taaatgaagcttttgtatagtctccacgccataggaagcagctatattttagcaagggaaagtagggatttttaatctcatagagttcaaatgtattct<br>ggtgtttaaattattatgcatttatcttcctgtattaaaataagtatttcatgcaccccataaatatatgcacctactatgtacccataaaaattgaaat<br>tgactaaaaaaaacgaggggctgggtgcagtggctcacacctataattccagcactttgggaggccaataggacaggtcacctgaggtccagagtttgag<br>accagcctggctaacatagtgaaacaccatctgtaaaaatacaaaaaattagcctggcatggtggaatgcacctgtagtcccagctac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	78800912	78801217	1000343	0	-	54645; RIP_Alu_chr10_078_01	NA	NA	SINE	Alu	Yc1	actggctgccagcaagatgccttttaatacaagataagcacaagccgttctaaagagccacttcctgttggcggggtggcttcctctcatcttcctctta<br>cccatgcccccactggaagggaagcctgagaggctgcagccaaagacacacagcttgccctccttccctcagggaggcctgtgagatccctaagctccca<br>tagcggctcaacgttctccttgtaattcaccagtttctaaagactgactccattgtaagccggtagcagtggctcatgcctgtattttgggagcattttg<br>ggaggccgaggcaggcagatcacttgaggtcaggagtttgagatcagtctggccaacatggtgaaaccctgtctctaccaaaaatacaaga<font color="green"><u>AAGAATTAG<br></u></font><font color="red">GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAA<br>ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAATTAG</u></font>ccaggcatggtggtgcacacctgcaattccagctactcaggaggctgaggcaatagaatctcttgaacccagggggcagagattg<br>cagtgagctgagatcccaccactgtactccagcctgggtgacagagcaagactgtctcaaaaaaacaaaaaagaagattcactacattgtgaaatccttt<br>cagagatgcctagcatgaagagggttgctgggaaaaccagctaaacttgactacttagaaaaaatgcatattttaatgaaatttggagcaagacctctct<br>gaaactacattttacttttgtgatactccttttgaaatttggagcaagacatctctgaaactaacattttaccttttgtgatattccttggggggtcaga<br>aaaatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KCNMA1:NM:001161352:14/28	
0	chr10	84400773	84400905	1000344	0	-	pAlu10-84531890;30847; RIP_Alu_chr10_084_01	NA	NA	SINE	Alu	Y	aatgtttcaggctcatcttatacaccagacctaggattagccatttgtctaagaaaccctgcttttttgtttctttacttgcttgtttctttacttgttt<br>ttagtgaaaaaatagcattgcaagcccataaatagtgtgggaagggtggtctgtttaatattttaactagaaatggaatatatgagacattatatacaat<br>aagacactttgtgaaagaaatacagacatacacaagcgcacagatcacaaatataagcttagaaaactgacaaaaaagtttctaaaatattcacaaagac<br>tttatttgggtagtttagtgattagcaacaattttattttcatatttatatgtatctgtatttttaaataagtatacattactt<font color="green"><u>AAAAAACGACAGACTG<br></u></font><font color="red">CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT<br>CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACGACAGACTG</u></font>aaaaatttaaagaccctaggttttgtagtaagcattttatattatgagaaa<br>caaaattactgcaacaattcctatcaaatcgtacaagttgtcctcaaaagaatgtaagcatttgttaatatttgcaaggcactttaaaaataataggcct<br>atgaggcattatttcatttagtttatgacatattaataatgcaccttatttatctaccacttgaagtagagcttaatgaattaacataatatccaatcat<br>gtttaatgaagagctttaaaattactcatctaaatgattgtcataattttttaataataattatatttagcacttttattgcatttttttccttgaaagt<br>attttgcaaacacctagttaatacttaatacat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NRG3:NM:001165972:2/9	
0	chr10	85626233	85626424	1000345	0	+	Yb8AC1538;7773; RIP_Alu_chr10_085_02	TACTTGGCAGGGACCATCTC	AACATTCCTCGATGACAGCC	SINE	Alu	Yb8	agccagactttcggtggctccccacagctgaaggataaattacaagctttataacctgacacacaaggctccagaagatcaggtcctgcctgtcattccc<br>aagcacccctacagaaatgcattttggctcattgaactagacccatccctaagtagcttctgccccagtcagtgactccctcctccatgtgcccagctat<br>gagacacacaccactctgctctgtaatgactcaactacatctgtgtttctgctacttggcagggaccatctccccacatccactgtgcttatcacagtgc<br>cagctcatagaaggtagaaaatacagcacaaaacaaatcagtgtgacctcagagtggggctactgaatttattgacataaggaat<font color="green"><u>AAAAGAGACCTTGGG<br></u></font><font color="red">CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC<br>TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAGA<br>CCTTGGG</u></font>gacgagcttgaactttaccctgactgcttctttgatctcagcctataaatctttcatagaaattctcgtcttccccctcctcatggtaggagg<br>gtgacaggtgcaaccggctgtcatcgaggaatgtttatgaatgatgacaagaacccaggacttgaggagtgttacttttgggtgttattttttaactcca<br>gaagacagcacctatgaaaaatattttctgatttcactgcctctatgcataaataaataaatacgaggcaacttgatttagtggaagaaccgcagacttg<br>gttgaacagatttgatttcagattctagctctaccacttaatggggaagtagggtgataggctataaaattgagacattatccactagccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	483	276	NA	intergenic
0	chr10	99108292	99108608	1000346	0	-	pAlu10-99239422;2521; RIP_Alu_chr10_099_01	NA	NA	SINE	Alu	Ye5	ccggctaattttttgtatttttagtagagagggggtttcaccgtgttagccaggatggcctcgatctactgacctcgtgatccgcccgcctcggcctccc<br>aaagtgctgggattacaggcatgagccaccgcgcccggcctcttcttgcacatttcttattctctctctctcccttacacacacacacacacacacacac<br>acacactctctctctctctctctctctctctctctctcattgggcatttattctgagcaaaggacttccaaaaagacatttggtgaggggtgagagatag<br>agtagtaagcaatgcaggcaggatccttgccttcactaagtttatgaggagccagaacaaataaataaaaaatttaataaaacacatgatt<font color="green"><u>AGGATAGTG<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGGATAGTG</u></font>ctatgaaggttcggcatggatatcatgctgggtcctggtttgggcaagtgaagggagccatagcaggagggcct<br>cttggagtggcatttagctaagacctggaggatgagtaggctttagggtggcaaacaaccaaggctcctacatttccagaaacccgggaccaagggcagc<br>agtcacttgcagcttggaaggtgggctggggctggactcatgtggaagctttgtttgcataccaggcttactgtttctacttagactgtgtttatgtgtg<br>tgtgcagttggggttgggagcattgctgttaaaagtgcctcactttggctgggaatggtgactcacgcctgtaatcccagcactttgggaggccaaggca<br>ggcagatcacctgaggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	105097540	105097836	1000347	0	+	4387; RIP_Alu_chr10_105_01	NA	NA	SINE	Alu	Ya5	ataattcagacttaagaatatcacatgttgattcttacaacaatcctttgagttgctattgtaacctccagtttagaaatacagaaactgatgatcagtt<br>cagagaagttacatcccaagggttacctactctgagttagtcttcaaaacctatactctttcaacataccatactgtctgtcttgggttatttcttttta<br>taatctactttacacatagaaactatagaacaaaaaggataagagtctatcttaagatcataaagctgggcacggtggctcacgcctgtaatcccagcac<br>tttgggaggtcgaggtgggtggataacctgaggtcaggagttcaagaccagcctgaccaacaaggagaaaccctgtgtctact<font color="green"><u>AAAAATACAAAATTAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AATACAAAATTAGC</u></font>tgagcatggtggtgcatgtctgtaatcccagttacccgggaggctgagacaggagaactgcttgaacctaggaggcagaggttgca<br>gtgagtcgagatcatgccactgcactccagccttgacaacaagagaaaaccctgtctcaaacaaacaaacaaaaaaaccggtcaggtgcagtggctcatg<br>cctctaatcccagcactttaggaggccaaggcaggcagaccacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctacaaaa<br>aaacaaaaaaaaattagccgggcgtggtggcaggcacctgtagtcccatctacctgggaggctgaggcaggagaatggcatgaacccgggaggcgga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PCGF6:NM:001011663:6/10	
0	chr10	107891548	107891549	1000348	0	+	12931; RIP_Alu_chr10_107_01	NA	NA	SINE	Alu	Yc1	ctgaattctagagagaagaataaatttactttaaaaagtacctggatcacaaaaaatatgtgagaaataaacagaatttatgaacttgtttagtatggaa<br>ggccatttttcatataataagtgcaataaaaagactaattttccaaaatattccttaggaatttattattttctgggtcttttaaggagggtaaatctgc<br>tttgtgtctgttaaagaattatgaattagtgtatacattatcttctcacgagtcatcagtctgttccacaagtagaatctttgatttggtgttatggatt<br>gagaagctgattggaaccacatagaacactgaagaatcgattggtgaggctgcctctgtggtcaacagagaggacaggggtgctg<font color="green"><u>AAAAACGTGTGCTCC<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCT<br>GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG<br>AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA</font><font color="green"><u>AAAAACGTGTGCTCC</u></font>aatactt<br>ctttatgcctttattgatcatgaatatgatatctggtgataaagattatgataatggtattgaactgctctcctttcagcaaggaaaagattaattccag<br>attgatttaaaaataatatattcttgcaggaaagcttatctttgacttaaaacacactaaaatttactgtattgctacattttttttcccagataagcct<br>tttgacggaactttctatagagaaatcaacaagttcatttggagaaactttcttaacatagtcacaataatactggtaggtgtcatgtcaataggtaaca<br>attactcatcatttactctattcgtctatgcatgtgcataaacttacttagtctttacagataccatctgaaatgtgt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	115509133	115509432	1000349	0	+	5030; RIP_Alu_chr10_115_01	NA	NA	SINE	Alu	Yc1	aggcttcggagtcaagacagaccagtctgatttctgtgtgtcacttactagctgcatgatccttagctagttatttaatctctctaaatttaaatttcct<br>cttttaaaattaggattaatagattttatcctgcaacaaggtagaattaaatgagatattctatgtaaaacaaaaatccccaataagtagtaggtattgc<br>catgccatataaactgttcggttgtgttttggttaagaggcagcagaactcaagagcatcttcatgacaggaaagcgcaattaacaaagtcatggaataa<br>ctcatctgatatttcagatgaacaggcgattgctttttgtgacaggtaattgataccttgtttacaggtcattggaaacaactttt<font color="green"><u>AAAAACCTATGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTGCTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAACCTATGCTT</u></font>gtgtttcataggtatgtttgttttgcaagtttagtatttggtgtctgtgccagtttttgtttgcttttcagtttatatttcatggg<br>tttatctacagtacaaatagctttgttaggcttcttcctccaaagagttttgtaatactattggaaaaataatacaaaaaagcctagaatagggtgggtt<br>ggatgggtgggtaggtggagggacagacagatgaacaggttgctgatggaaagcacatctaactgtttcatcggtatcctttccaaaggaacacaagtct<br>tacagtaattttccctcttcccctttttggttaggtctctatattataacaataggctgtctggactttatagttcccaagtaagtggaaatcagcacaa<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	115861732	115862030	1000350	0	+	239100;pAlu10-14115992858; RIP_Alu_chr10_115_02	NA	NA	SINE	Alu	Ya5	gacagcaaaggccagtggctcatcagtgagaacatcatacctctgtcagaggggagaccctgagcagctcccgacacccacacagggctaggaattgacg<br>gtggcttagggtacacgtaagaggaacagcatccaccacaggacagtcccttcctcgcgtaccacccgggatccctgctccctgtcatcgccatactgtg<br>ttctctcagactgtaaggtccttgtcctgtctccctcacatggatcctttccagaccacgggcactctctcaggtcagcaggtccagctgcaatctggaa<br>tcagcatctaccgtgtggaaatgggagaggggacttggttcttaaaccaggggccttggcattagctacctttggtttttctccagaaat<font color="green"><u>AAGAATGATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATGATT</u></font>agttagataattataaacaatggggggggggggtagttttgtcgtagttagcaaattacattgaatgtaacaaaatcttaaaccataaagc<br>aaaacgtgctgggtttctgcttcctgtggtgacatgacatgaaagcccagctctttttccaggaggacacttctctgtttacaagactgcttgagcaatc<br>ccattatcaactctctccagagaggatacagctgaggcagctcaaattcagaaccttatttttaaagaactaaaaaaaaattagatcctttgataagatc<br>actcaagtatagtccaaactagcctcccaaattttggagtgccagcaattatgttcaatatctccccatctgcctccccccaaaagaaccaattaatat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	118265325	118265632	1000351	0	-	17678; RIP_Alu_chr10_118_01	NA	NA	SINE	Alu	Ya5	ttctggaaggtattgttttctgcttgtttaaaaaataatacacttaggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggca<br>ggtggatcatgaggtcaggagattgagaccatcctggctaacatggtggagccccgtctctactaaaaacacaaaaattagctcggtgtggtagggggcg<br>cctatagtcccagctactcgggaggctaaggcaggagaatggcgtgaatctgggaggcagagcttgcagtgagccaagatcgggccactgcactccagcc<br>tgggcagcagagcaagactctgtctcaaaaattaattaaataaataaataaatacacttaatcaagaggccaccacattttgctt<font color="green"><u>AAAAATGTCATGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATGTCATGAGA</u></font>atgtcaaaaacttgacgctactgctggagaaatgtttacacactatagacctgaaggaagatggaaaaagttttgct<br>gttcagttggcttctctcatgctttcagattcatttgagccaaggctgggttttggtttattacacgcttctgtgcctggtacttacgctgctattgtca<br>tctctgatttcccctctcactgaacaactttggagccactgattctttctagtgaattggggatgtaacaaacacaggaaacaaacacaggagtaacaag<br>aaattgtgcaaattaacgagctcaattgaagaataaacccacaaatggtgcgagaagacatcagctgagaaggcttgctactaagtaaaatgcttgctga<br>ggccaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	123489189	123489494	1000352	0	-	3107; RIP_Alu_chr10_123_03	NA	NA	SINE	Alu	Ya5	gattgcttgagcttgggagatggaggctagggtgagctgtgattgcctcactgcactcaacctgtgtgacagagcgagacctttctcaaaatacacacac<br>acacacacacacacacacacacacacacacacacactcgttgcaatgcctatttccctggttttcctagaggatttttaacatgctatttccacggtcat<br>gtgggtttcacaagctggccctccaagccctctgaacaagctgcctcttcgtgtgatgtgaatttagctgagggagtcactggattcttcatacaccggc<br>attttcctttctggaatgctgcctcctggattgtaagtacaaaaacacaaagtgaacgtgatgcaaacgcaggaaagaaatgtctttttaac<font color="green"><u>AAATCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAATCTTC</u></font>acaggagacatgctaagataaaagagcagaacactgaaggccccagtgactgaggggcccgacaagcacctcactttcgagcgggt<br>ccaggtagtggccgtcaagacactgcacccctctgcgctccaggatttctgcaacagtgaggcccctcctcaaaaggcagtttggttctcgcaacctcgc<br>gcaatgaggacagggccaggcattacccgctcttagtcctgagccattcactggctttgtgcccttaagaaagttcctactccggtcaggtgtggtggct<br>cacacctgtcatcccaacactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccatctcaac<br>taaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	128106486	128106786	1000353	0	+	pAlu10-128147416;15057; RIP_Alu_chr10_128_01	NA	NA	SINE	Alu	Ya5	ttaattcagagatgagcttgggaaggaagagagaggacaatttcaccagcagttgaatgactgctcatcattccaatccagcctctgccctggaggcaga<br>accagatgagagatgtaaatctgtgtatggttcccttgcttctcaaagcatgaccatctcctcatgctgagtaagagtctaatattttaaaggaaatacc<br>tcttgtacatcacatctcccatccatgccaacttcatctggtgctcagtcgatctgtttcagagctggaggaagctgtctgggtgagctgacctgtacag<br>agatatgttagtctgtcatcaagatgacacttaagggactttaaatagtgattctgatatcatcgtattctaattgcacctgacttt<font color="green"><u>AAAAATGATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATGATTACT</u></font>aacccccacccacctctggcccctataaaaaggaagtcagtccagagcctgcctgctgcctacctcccagggccctcctgagaata<br>ataagtgtggattgggcatgagttttaaatgcatagggaacatctgttcattagccaggggactttttcccttagaaaataaagtaatggagaaatctca<br>caaaataaaaaaggggccatcaagccctaaaacctagtctcttaacatctttcatgacacagttgtcttgaaaaccaggccttgtgggggagtggggagt<br>aattttctggagttccatgagcatttcaagagctacgcctataggcctaggtcccagaggcccaatatgcccagggcagagagaattcaggatatgactt<br>g	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	129190308	129190309	1000354	0	+	238615;19840; RIP_Alu_chr10_129_01	NA	NA	SINE	Alu	Ya5	ctctaagatctgcaccatcttgacccacttctacctgggccacttctgaacaactcgggcctctgggcagaagccctgctgctagatccagttcactttg<br>tgtctccttgtaagctctcggtccctctcacctgggtctgtctgagatccctacccactctcctccccaaggccccatgcctgtctccacccttccgctc<br>ctgcagatagatagcagtctggtttctaataaagtggcctctggatcacagcgtgaactgcttcaaagatgcccaaacctcagggattctcccatctcct<br>ctgcaggcgatccaggcctctcacctggcatgaggccccttagagtaggaatcgagcctccagatgtaccctctcatcacccacag<font color="green"><u>AGAAGGCCAGATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAGGCCAGATGC</u></font>tccccaagcccttgcaccttcccatggtctgccccggcgtggaccggctgcttcttgctgctgtctcgtgtgacggctgccatgac<br>agctgccttcctgccttctgggcatatttcactgctctcaaactttcgtggcttttggagttcaccggcgaatcttgttaaaatccagattttgattcag<br>ctggtctggggtgggcctcgaggctctgcatttctgagaagctcccaggtgatgtcccagctgctccagggaccatccctgagtccccagggcctgtgct<br>gacttaagctcctgagagcagaggcagtggctgtggctgccacctctggatctccctctgagggagctgtgccgtggcctgggctccactccattttttt<br>	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DOCK1:NM:001380:38/52	
0	chr10	133449095	133449408	1000355	0	+	13306; RIP_Alu_chr10_133_01	NA	NA	SINE	Alu	Yb8	tggtctggggtcagagcctgcgactggtccggcacctgatgccactaggtactcatgctcttcaggtctttcctcctctaaaagtagaaaaaagaccaga<br>ctgtatcaaggaaaaaagcataggaagagaggaggagaaatgaactcaatcagtagccggcaaggtgcctggcacactgtaagcacctgctatcagcaag<br>aagcagcaaatctaaaggagagcagtgcgacccccgatgagggcagagcccctctccctgttgtgcagactttgcatgagctataacaaaaagcgcctta<br>catttcggagtgagaggactagagcatgggcctaatctatttttaaaatgaaaacatcattttaatgttgctattttcacaaat<font color="green"><u>AAAACTTGTATTTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAA<br>ACAAAAAAAAAAAA</font><font color="green"><u>AAAACTTGTATTTATG</u></font>ggaaaaggtgtgcatgctttctcttttaaagatgaaaaatctctctttctatttgtagaagctgtgcacg<br>ggacgccaccccgccggctcctggaacccgaccgtccagagcgcctcattggactgcgctgagcccagtccacctgcaccactgccgtcctcctcgctcg<br>gccaccgttggttaccatgggaaccatgaccgcagccagcccccgaggcgagaaggcctcttcatcttgccactcgggtcggcctcccatttccatttcc<br>agagagctcgctgtcggctgcggggggctttccatggccctggtcagccctccccactggtggaaaccagtttccatagcaacaagaaggtgggcagagg<br>gcagaaggcagaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	4802536	4802832	1000356	0	+	540; RIP_Alu_chr11_004_01	NA	NA	SINE	Alu	Yb8	tgtaaatttacatatttaattacataactatatatgctatgtaataatactcagcaataaaacttgatgcatgaaataaaatggctgaatttcaaaagta<br>tcatgcaaagcaaaagaagttacatacagagactatatgtttccatttatataaaattctagaaaagattaaagtataggagtttacagctccagccagg<br>ggctgggggtagaaaagagggcttattttatacaggcataagagaatattttgactaatgaaagtgttatctattttgattgtggtgatggttgtacgac<br>tgcataaatctgatgaaactttgaattctgtacacaaaaaagggttaattattgtatgtataattttatctcagcaaacctgcctt<font color="green"><u>AAAAACTGATTGCA<br></u></font><font color="red">GGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC<br>CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACTGATTGCA</u></font>taatcaagtattaaactataattttaatattattttaaaaccattctgattatatagtgttgtataaaataccaccctgatgtggtttg<br>tctctgtgtccccacccaaatctcatcttgtagctcccataattcccacctgttgtgggagggacctggtaggaagtgattgaattatgggggcaggtct<br>ttcccatactgttctcatggtagtgaataagtctcccaagagctgatggtttgataaggggaaaccctttttgtttggaactcattctctatttgcctgc<br>tgccttccatgtaagacatgacttgctcttccttgccttccaccatgattgtgaggcttccctagccaaatggaactgtaagtccaattaaacctct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	5106969	5107211	1000357	0	+	238598; RIP_Alu_chr11_005_01	NA	NA	SINE	Alu	Yc1	tcccactgtttaaatggccctgaagtgtaatgctgaagtgctatcaagtttttccaattgcaaggaggccatcttgtgccttatggagaaaataacgttg<br>ctaggtaagcttcatccaaaaatgagttatagtgctgttggttgtgagttcaaagctgatgaacaacaatacagtttcctttgaaaaagaaggaagttta<br>tctagctgtatatgatgtcactttggaaaatgcttcagtagcatttatgatgtgtgataaaggtgtggaaaaatgtgtgttaaataaaatttatgagaag<br>ccattgttctgaagtgagctcctgcactaggtcccaacaaactaaaccaaaatggagtcacttgtgctaggtaccatgtaatcaaacagaaactct<font color="green"><u>AAAG<br></u></font><font color="red">GATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCT<br>GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAG</u></font>aatcacagaaatccccaaccagaccagtttttcctaaaaataagatagtcaca<br>ggaaacaatcagaaaaggcccagtctgtgctggcatgattaataaataccctctgctttaactcttaggaagaaattaaaagtaacttaatattgaccaa<br>ttttcattttgtgttattctgtttccttgttcctgctcaaccctcaacctggtttgcaaaaaacaactgttacaccctatccaatggaactccttttact<br>tcttttcttttctttttttgagatggagtctcactctgtcgcccagcctggagtgcagtggtgtgatctcggttcactgcatactccacctttggagttc<br>aagtgagtctctgcctcagcatcctgactagctgggactacag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	7716916	7717219	1000358	0	+	pAlu11-7675852;228; RIP_Alu_chr11_007_01	NA	NA	SINE	Alu	Ya5	attgcattttcagacactgcgaacaagaaaagacgtagtgcatgattctccagaactcatcaggccctctcgactcacttggaggggcaatcactacgag<br>ctagcagggtgaactcagggttgagggggagactgccccctgttctctagttggcctgtgcccctctcccatgtggagtcagttgggccttgggagaggg<br>atccctgccactcacctaattcctatggggcctaagcttctacagaaggtggagatagtatgtgattaaaagtaaatggttttaccaggaatgtagtttg<br>gtttaagagctttataggtaagattaaacccagctgcattatctgtggcatcagagacgaatttcagccttagagaattagagccaat<font color="green"><u>AAGAATGGATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATGGATGA</u></font>agggaggctttctccacaaaattttcctgcaggatgagaaaaaaggattctttgttcagaatctagaaaatagttcccattcaa<br>tgatttaagaagaactgaatttgccatgatatttcaggattgtccaatccaaagtttctcagtcttgtcacaattgacattttgagccagaaccttcttt<br>gtgttcttgccatcctgcatcttttgtaggatatttggtagcatttctggcctctaccagtgacaattcctgcccttgtgacaactgaaaaatgcttctc<br>attcattgccaaatgtgtcctgagggttgggggtacaaaatcacctccagctgagaaaccacagaaacaccattccatttctgtttcttgtaagtaacct<br>gtct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	exon:CDS:OVCH2:NM_198185:11/15	
0	chr11	9794587	9794899	1000359	0	+	938; RIP_Alu_chr11_009_01	NA	NA	SINE	Alu	Yb8	ctttcttttgcctagtaaacctctgctcttaaactcactccttgtgtgtgtctgtgtccttaattttcttggcatgaggcaatgaacctcgggtattacc<br>ttagacaacaactcctgttcaaagtcaagagcttctaccaaaaagggagaggcttggcctgagagaaaatgcaccagggcagaaaatgtgagccatagaa<br>acagagtgctcaaagggctcaggcgagtattgcacactagttccaagagtcacgaattccttctgatattctttttcaggtcctgcttctggacaccatt<br>tatgtcaccctacataacagagagggtctctaaaagaaaataatatttatttaatagggctgtattagtctgttcttgcattgctat<font color="green"><u>AAAGAAATACCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATACCTG</u></font>acgtcaggtgtggtggctcatgcctggaatcctagcactttgggaggccaaggtgggaggattgtttgagccca<br>tgagttcaagagcatcttgggcaatatagtaagaccctgtctctataaaaaaattagctgggcatggtggagcacacttgtagtcccagctactcaggag<br>gctgagctgggaggattgcttgagcccaggaggtcaaggttgaagtgagctgtcattgcgccactgcactacagtctgggtgtcatagcaagaccctgtc<br>tcaaaaaaaaaaaaaacaaaactataagaggttgaactggttcatggtttgcaggctgtaaggctgtagaggaagcatagtggcatctgcttctgggaag<br>gcctctggaatct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	14348325	14348626	1000360	0	+	pAlu11-14387378;239025; RIP_Alu_chr11_014_01	NA	NA	SINE	Alu	Ya5	gatgcctaaattttattttaaataaaaagttatcacacatatcaaactcaactacacaaattgttatactaaaacatttcaggaaatatgtgctttctaa<br>cgctaatgaagttttagaaaagattgtaaatatacaaacataaaataaacaagtatcaccaattctgaaatttgttaaatcagtaaaagaattttaaggg<br>gtaaaagttctatatctttataccagctgacttgacaaaattaagagttccagtaagagcaaaatgttgtcctctatttgggagggggaggggacagggc<br>actgagcaatcaagcagttaaaactcctatgtcgtatcttaaatcacttataacatcaaaaagaaagtaaacatttcaatcctatt<font color="green"><u>AAGAATATGATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGCAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAATATGATTTT</u></font>gctattctgttctgctgtggaaaactaagtagtcacttgtttaaaaactaagatgaagcagacatagcataaaccaattaaaat<br>taaatcaaaacaacagttttaagatgcaatatgcatacatgaatttcttaacagattattatagttaaaataccactgagtgtactcacttcaagtggtg<br>tgtaaaaataaaaatagctgaagagaggatggtcaaacctcaaaacaagtactataaccaccacccaaaaatgcaaaataaaggaagttgtcttcttcag<br>agttaagaggaggggaaaaaatctttctacttacacattgggaggaagtggggatggagagaaagaaaaacaattccatgcccttcctaaatgtttaaga<br>ac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	16597579	16597886	1000361	0	+	pAlu11-16636632;5611; RIP_Alu_chr11_016_02	NA	NA	SINE	Alu	Ya5	gattccatttatataatgcataaaaacgggcaaaatcgaactatattgtttagagatgcattcataggcagtaaaactataaagtaaagaaagtgactaa<br>cattaaacacagaatggtgatggggtaacactaaataccaacagggagtatgggggtgtaattgggaaggaaaacaagtggcttctgggaaaataacagt<br>gatttcattttttttacctcaatgttggttggttacataggattcacataactattagttacacatatatacatccatattttaaataccttatatgttt<br>acatttcaatttcaaaaaataaaacacaaatctacctcagagttactgtgaatgtaagtgaaataatgtatatggaaaggtcttt<font color="green"><u>GAAAACCACAACTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAAACCACAACTAC</u></font>acacacactcagttttaaaagttaaagactggaaacacactcactcatagaccaaataagcaatagcccacatgata<br>taaaatcccactacctcaaaaacacatgttgtcatagtaataagatatatcttctgtaatatcataaaataatgttgtcattgtaataagatatatcttc<br>tgtaatatcataaaatgatgtttaacattattcttttagagattcattcctttggattaaaacattatcctttttttaacatgccttctgagaaaatata<br>ctaagctgagaaataaagttataagggattttaaaggaactataatatgaagacttggagtttttcagatttagaataaatatagttcacgtctccttac<br>aacactcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	32286654	32286973	1000362	0	+	pAlu11-32325708;238353; RIP_Alu_chr11_032_01	NA	NA	SINE	Alu	Ye5	aggctgctgttgttatttaggtaagagatgatggtggcctggtcaggatactataaatagaaatgataggtatgactggataggaatggcgagaaaggtg<br>aagagagggaaagatgaagggagggtgagagggaaataacttctacttggatgacttccatgtgtttggattaacaacgtggtgagcagtgcacttcaac<br>ttgacccatctttctttcagagaacagctttccagttgccttgagaataagtctgcagaacctaattcctacttcttttcatcttgccagccatggacga<br>aatccttcattaattaggaaatcagacaaaaaacaaactaaaatgttcccagaaagaggtgtcaggaagtagaatatgtatggaatt<font color="green"><u>AAGAAAAGGTCTT<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAGGTCTT</u></font>tattgatcatctgttccagccatgttaatagataagaaaaatgtgactcagattaaggagccatgac<br>caaaaataaacagccagtcaatggcagaaccaaggctagaatccattcttctgattgaacaaatatgaatgaagcagcataataaatgggtaaaataatt<br>acatgtacataatagctatatatttgtatttttatgtcctctctcctccaatcattggggaaagagttgtggcatttgaatgcaaattgaagggtacaat<br>ttagcactgatttttgaagacagcttgctacacatgctatgggacactaaactgtaaaacactaaatgttacttaaggaaaggaaggaaggaatttttaa<br>cttcaaattatgttgttgaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	37962063	37962365	1000363	0	+	238373; RIP_Alu_chr11_037_01	NA	NA	SINE	Alu	Yg6	caggagtaaaatatgcaaataaactggaaacattatcatgctaagaaatagattcttatttagccttgctgcctctggaggagctgtatgattatatgtt<br>acatgataagttagtttaaaataataacaggcaattaaaaaaacttttaatatttttggagctattcaatcaccaacatttatttgtggattctcctgtg<br>aagacagacttgccctttttagtgctctgtgggaagaaaccgaaaagaaaaaaaagacaaagtagctctcagtctacaggaactgcagtctaactggata<br>acaaatctatgcattgaaatgcattcagtgcccttacaaataaggacaaaggctgaagcaaattaagacaatggggatggaata<font color="green"><u>AAGAAAATGCTTATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGAAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAAAATGCTTATTA</u></font>tattagaaacagaccaactgttgagtaagaacaggttagtttgggtgagattaaggacaagattaatgataaatttagcta<br>tcaaactcatttgcttctttctgtatttttgacctagactcattaaacaataaaataatgaattgctttttatttcaatacatagctcatagaaaacttt<br>agattctagctgattcagttacattattgaatatcaattcttataaaaatgaatagatgatgacaaggtttctttaaagggtgtttatttatttattctg<br>ttatagattcagggggtacaagtgtagatttgttacatggatataatgcataatggtgaagtttgggcttctgctgtactgatcactcaaatagcgaaca<br>ttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	42464107	42464409	1000364	0	-	3303; RIP_Alu_chr11_042_01	GGATCACTGATGCTTCAAATCAAG	CTGAACCAAAGAACATGGATCTG	SINE	Alu	Yb9	gtggaatcttagttatgaatctcctgaggcttttcagtgatctgttggctactattactctaatcacctctatcttctgtaagagtcagaattacccatt<br>tcctgaaagaatccccacatatctgaaccaaagaacatggatctggcgatagaaataagtaaaaaatcttttgtagaacaactcatgcgtctatttctta<br>ggactcactctgttttcaacccctcccacccgaggggagatggtctgtccatattatcatttagcacttacagagaaattttatgattgagctgagacat<br>ttctcaatatggggaattgtgtagttaacattttcatagtgatttgccattaataaaagcatacttcctgttttaattgacaacatttattt<font color="green"><u>GAGAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTTCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GAGAAACC</u></font>atagaagttgtgatggtttggatcctagcctctccccaaagtcaactagactttttactttctactacaaatatatcttttctttctcc<br>tattgtttctcctcttctttccccacactgtccacttagaatatagtagccattgacaacttaatattgaaataataacctaatgggaacaagaaagagg<br>ggcttgatttgaagcatcagtgatccttactataaatgggtaactgggttacatggctgaaagagtgattaccttgtgcatcaatcacttattggattat<br>taggccaacataaaacatatagaaaaaattatgatcagttcagttcagttaaacagacaaaaactgagcgtttactgtggatcaaggatgccacaatgct<br>aaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr11	43462666	43462667	1000365	0	+	18402; RIP_Alu_chr11_043_01	NA	NA	SINE	Alu	Yb8	tattatggccctcatcctgttattcttctgtttaagaaacaagaggctccctttacaacaaatcctcttcgtgactttcccacacatttgtaacatcacc<br>taccttttcctcagtatcttatttgttactatcccctgtatacattctttattctaattaatttgaaattggtaatgccctcacatgtgcctttactatc<br>cctgtatgtatgtgtgtagacaaatgagtctatgcatacatgctttaaaaaaaaaaaattgttaactctggaaggctggatgcagtagctcacacctgaa<br>tccaagcacttagagagcctgaggtgggcggatcacctgagaccaggagttcaagaccagcctggccaacatagcaaaaccc<font color="green"><u>AAAAAAAGTAGCCAGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCTGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAAGTAGCCAGGTG</u></font>ggtggcctgcgcctataatcccagctacctgggaggctgaggcaggagaatcacttgatcccaggaggcagaggtttaagtga<br>gctgagatcacaccactgcattgcgctccagcctgggcaacagaacaagactctatctcaaaaaaaaaaaaaaagtccctatggggagtgacctccctga<br>ccctctactcttatctgtttaaatcctgtctcaggtagtccgcctttctctaagaagcattttgtgattacatgcaaatattttttccctctaaaaaaaa<br>attaatttttctcttattatttcatgtatgtagttgtctgtctccaacttgattataaattcattatatttcatttcttaaggttagaaactttccatt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TTC17:NM:018259:16/24	
0	chr11	43891845	43892165	1000366	0	+	9989;pAlu11-43930898; RIP_Alu_chr11_043_02	NA	NA	SINE	Alu	Yb8	agctgagatctgaaccaagtctcgtttgacatcatagttcatagactcaaaatgatgccattcccatggttctgaggactcagtagctctacagaggaat<br>ctgctaagccatctagataaaaccatcaagaatgcttaataactcaggggctgctggattacactgctaccaactcttcttttttgaagtcactgaaaga<br>caccagcaatgaggtcccaagaaatggttcatgtcattttaggaacagtcctatctttcctaatttggctttcattctggcatgtatttgcagagaggtg<br>gcacggtggcatcatgtggcattgtggttcagtcttctttgtaaaatgggtctaataataataatgcctgtgtaactgggttctt<font color="green"><u>AAAATTAGATCAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTAGATCAGTG</u></font>taggcatgtaagtgattggaacagcacttggcatgtaagaagtgctcatgaaatgttaactaat<br>gttattatttgctattatttagaaataagaatgtgtaaatgttgcctactccttttagggataatgtaactatcagaatatcttcaagctgtctgaatgc<br>tacataatttaaaaccttgacataattccctatactccatagtgactttgctaatgactataacctctagtgatctcttgttccccaaatttttgtctgc<br>cctccataatttcacatccaattacactgttttttaattgtatctcacacagtttaccctgtggttcactggatggagattttacctcctgcagcatcta<br>caatcgtgctgggcattgaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	49425098	49425416	1000367	0	+	pAlu11-49456606;Yb8AC1565;54444; RIP_Alu_chr11_049_01	TTAATTTGGTTGGAGGCTGG	TCCCCACTGTAAAGCAAAGC	SINE	Alu	Yb8	agagctcaaatttttcagccaatttatttttaaatgcatttataaactatcagaatgctatgctgcagaccttttagtagttatagaatcttgtgactga<br>aaggtacctcataaaaacctgtgtgtcttaactaccttcccagagatgtagggctcagatgccagacccagagaggtttctaggagcctggattgagtag<br>gtctgcctttaatatgccaccaagggacagagaaagtatggtgttcaaagatgacactggaaacaaaagtagtcaaactgagatactatttgaaaatcct<br>aagcagacaagcacaactaggtataaggaaactgaagagactgggaagacctggacaaagtaaattaatttggttggaggctgg<font color="green"><u>AAGAAATAATGGTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAATGGTGAA</u></font>aacccctgaaataatgtggaagagtaatagatacttttaatagagcatggttagctttgctttac<br>agtggggagagttggtaagaaccctgagccaatttaaataaatataatatagacagactgcttaaattttctctatagattccaaatcaaattagccacc<br>caatccagtatgtgaagacttcctgtggttaccacttattattgtccaaaggtgtccattttgattttgtaactcggagtattaaacaatgtttcccctt<br>attgaactaaaatgggcccactataacttcttcctactggtcctagtcttttatgctatgcatagccataatacaaatgcaatatcaattgtactttttt<br>tggaaatcaatagggcccc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	443	110	NA	intergenic
0	chr11	61890322	61890394	1000368	0	-	12975; RIP_Alu_chr11_061_01	NA	NA	SINE	Alu	Ya5/8	agtgtaactgtaaccccacttcctgaaatctcaggagtaatgttaaaaatccaaacccatcaaaggccagggtgttacggtatttggctcatgaatcgaa<br>aagcctaatcatttcaatttaatctttacaagtagaacaagatccaaacatgggacgttttcttatttttctttgcttttgtggttgtaatgcccttttg<br>gttttctgagcaagctgaatacatctgataaatactaccattggacaaaggatctaaacattgagatgttttactaaatcaaggtttcaagttggcacaa<br>tgtttttactaagtcatatttcaattagttcatctttccaatatggaggcggggggggaaagacaaggactaatatgtcctat<font color="green"><u>AAAGAATCTCTGGCCGG<br></u></font><font color="red">CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATCTCTGGCCGG</u></font>gcgcggtggc<br>tcacgcctgcaatcctagcactttgggaggccgaggcgggtggattgcctgagctcaggagttcgagaccagcctgggcaacacagtggaaccctgtctc<br>tactaaaatacaaaaaaaaattagccgggcgtggtggcttgcacctgtaatcccagcgactcgggaggctgagacaggagaatcgcttgaacccgggagg<br>cagaggttgcagtgggccgagatcgcgccattgcactccagcctgggccacaaaaagcaaaaaactccgtctcaaaaaaaaaatctctgccgcttttgag<br>aagtaaaaacaaaacgccttgtgaatggcaacggagtgtgcgtttatctagagccttctgtcatctcttgggc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	81556184	81556538	1000369	0	-	3136; RIP_Alu_chr11_081_01	NA	NA	SINE	Alu	Ya5	attattttataatatatttacatttacaagcattcttaaatgtagatgaaagtggagaataaatgcatggacaaaaattatcagtcgttggtgtgtatgt<br>acatacttcagtcttattgatttgactaataatgtttggtcccttaacatattcaaatcagctaagtgtagagtcccagctacagatatagattgaatat<br>gtattcaattaaaaatcccagtaatattcaatggcatctcatttttttcagttagtactgatggcagatagacaaaaagtttattgcaagtttaatgtac<br>atgaaaaagcggtttgaattacagtggcttactgtcaaagtgtgtcattagccaatgtaaaaccatatctagcataggtagatc<font color="green"><u>AAAAATATATGAACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATAT</font><font color="green"><u>AAAAATATATGAACCT</u></font>gtagtaaacatgacatttccataatcatc<br>attggcatagtagccaattaagctaattttctttgcatctaatctaaccagtatgccgtaaatgttttacagagaaggaaatgttttaaatttcccattc<br>tctgaatctatttctgtgaattagcaagaatccctcacttctataggtaataccaagctagaggcacacaaattatttttagcatcttggccccatgcac<br>tattcatctccaaatagtttaatagcttttataagtttgtcatatcatttactaccaagggtgaagcagaatacatccttaaaacagaactgtttccata<br>aaactctgtataccagcatttcagaaaaactctgggccacaactctttttcaagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	92246007	92246301	1000370	0	+	14987; RIP_Alu_chr11_091_01	NA	NA	SINE	Alu	Yc1	aaaggttaaagcaaaggggactttcttatcatgctagctaaaactgccctgttttatatctcaaaaaaaaatatatataaatatatataaattatatttt<br>aaatttatatatataaatatatataaattatattttaaatttttatatattaaatatgttttaatgtataatattaaaatatatatatttaaaatatata<br>tatatcttgatttcttggaaggtcagataaacaacttagtgttggcttggtggcatggaacttaacatgagtgactccattttggtttgatcttttgggc<br>ctggtgcaggaactcagtccaaaccagtgactttctgcaaattgtatttaacacactaaaatgtatttgaagcattataaacatctaagtt<font color="green"><u>AAGATTATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAT<br>TATC</u></font>tccacccacaatttctctactaatctctgttcatgccatttcaatttgtttcagctgtgtccatatatttcagactgacagcaattacagatatga<br>ctataggagtgagtggagtgaccctggttgggcctatgaggataaaatgcccattcttccttaactgttaccacacactgtgctgaacaatgatttctgt<br>gaaggcattaagaatcttatacaggtccaaggatgaatagaacaagaaagaaaaatagtatctgtatgatcttgctagaggcaggcatggggttggctaa<br>aagtggttatggagcccatgaaagaatttcatgtgctctcagaaataaatctagtttaaagagtttgactcttgaagaaataagcaatttaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FAT3:NM:001008781:1/25	
0	chr11	92608479	92608480	1000371	0	+	15668;pAlu11-92793021; RIP_Alu_chr11_092_02	NA	NA	SINE	Alu	Yc1	tttttccttcataggatcactgtgatccttcagagaatgaaagtgatttaaaaacactaaagcattagattacttagtatcattatggctactaatgaat<br>gataataatcattattgatatttttgaaagtattaataatagggctaataccaggataatgagattataaataatattttgtgagaacaggttaattttc<br>ataaacaagccttttcacagaggctgaacaatagatatcactcttctttcactaaaaaaaaaatctgaccacttttaaaaaattccaattgcttttccct<br>ctcattgtgttaacataaaactcctccgaatttaaagttctaaaagcaagacttcttccaaaaggctctgcctcctatgccccaag<font color="green"><u>AAGATCCTAGACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATCCTAGACAG</u></font>ttgctgctctttctgataaacagaatgggtaatgaagtgtggttgttagaaatacagttcaggactgcaggagccagacttcctggg<br>ttcaaatccacacccactttgtgaccatgacaaagcaatcagcttctctgtacctcagctgcctcttctatagcgtgcttctaaatggagtttttctgtc<br>tttgtatccccagtgcttgccacagtccctattccaggggtgtgctggtaaaccagttctctaaaaataaaagccctgatttgtagcatttgctgatgac<br>tgcagtgtaagtacttccaccatggctgatgtcaggctacccgtggtttaacaactgacctgccaaattcctgaatatttaacagttacctcttgggac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAT3:NM:001008781:21/25	
0	chr11	96614774	96615086	1000372	0	-	13787;pAlu11-96648755; RIP_Alu_chr11_096_02	NA	NA	SINE	Alu	Ya4	gaggctatccttactaagactgaagatcacagaaagatagtattagaaaaaaatggatacataaaatattccttggtagtgagtgttccttccataaaaa<br>ataataactttatggttgttttaaacagtagttgcaattggtatctttgctttcagaaatgtctaataggaaaaataaccccacagaatttggaaagatg<br>gaacaatatcttggtaacgaagtagaagttagaataagagagatgatgtgttttgtaataagaatcacaaagagacatggtatcctcatccaattgtcct<br>aatacttactaagcattgttggtgatttgagaaaaactgaaaatttggaaaaattatattcagattcaacttatttggaatcaatt<font color="green"><u>AAAGTGAATAATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG<br>TGAAAACTTATCTCTATTAAAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGTGAATAATTC</u></font>tgggcacccacgaagaatcagacgaagttaaatagcataagtatgtgcatattcgttaagaaaaataaaaatt<br>ttcaaaagatatatagactaagaaattttgactaaaagaaagataacagcagaagttgaagaatttctaggcacagaaagtcaagagtacaggagactca<br>gtggtacttattagcaagcacattatgaaaatggcttacaaagtggagagagactgttgagtccagaaggagcgataaattaaaacaatagccaaaaagt<br>gctgtgagtgtagaacatcgctattcatttgtagtgagtaagtagtagaagtaagaggcatagaagtggtcataaaaagcatgataatagagcttaaagg<br>ttgagtgattcta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	103087945	103088090	1000373	0	-	pAlu11-103121915;6899; RIP_Alu_chr11_102_01	NA	NA	SINE	Alu	Yb8	tatttcaaagagcagaagttttcattttgatgaaattcaatttatcaattttctttttctattttgatatcacatcaaacaagtctttgcctcaccaagg<br>tcataaagatgttctcctgtgttttcttctaagttttataatttcatgttctacactaagatccatcatccacactgtgtaaatttttgtgtaagttaaa<br>aggtaaaggttctgggctttttctctctctacctggatatctaaatatccagcaccatttttcaaaaagactatctttccccatttatttggcatttttg<br>tgtaaaatcaaccgaccacattccagtgatctctatgcctaatattacagtaatatcagattgccttatgattactgaaaagtgactctt<font color="green"><u>GAAATCCTAA<br></u></font><font color="red">GTCCCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG<br>TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>GAAATCCTAA</u></font>ctcccataactttgttgatttttcatgccacttactttttaatt<br>gagatatatacattagtctgatgaatattaaagttaattttcataaaagaggcattagattagtgcctagttgacaaggtaacagttaccaagagggaga<br>tggggaaacatatttgaggcatagtcagggaaataaaattgacagaatttaatgactcattacattaagggataaggtaacaaaagtctcagtataatat<br>aatttataagttctgtcttaaataattagtgtatattatagtaccataatctgaggaaagaaatacaggaaagaaaactcataagttcagttttgaacct<br>gtttcaaattgtaatgcccgagagacttccaagaagacatgtttaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DYNC2H1:NM:001080463:55/90	
0	chr11	103410832	103411134	1000374	0	-	Yd6JX456;20874;pAlu11-103444811; RIP_Alu_chr11_102_02	AAATGCTCAATGAAGGCTGTAAG	AGTATCATCAACCCCTCAAACAA	SINE	Alu	Yd8	acagctctgtcaaattgacacataaaattaaccatcccagctagccttcccatttgataagtgacttctggtaactaagctcttcagtctagtcaatgcc<br>atggctgcaattcttccattgcaagccctctgtaaatctgatttgtgattagaattggtgtagcaaactgtcagcatcaatattgtaattaggaagagct<br>aagagcccaggacttagagacatgcaaaagtctatggcaatggagagacaagcagaagagggagtccaggaccccagaaaaagaggaaattattgcagta<br>tcatcaacccctcaaacaagccaaattacacaaagggaagataatcttttcaagttctatagccacaattacattgacagagac<font color="green"><u>AAGATTAAGAATTACA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGATTAAGAATTACA</u></font>tgtagtatagaaatatactggtgaagatccaaacacaagaaacttggcatcctcttacagccttcattgagcatttgctta<br>atgtaaaaattatattgttgctttaaggagatttgtaagttactcacacaccatcattttatttctcaaggaatttcttttctccaattcaacaggacca<br>atagcactggtatgcctatatcagttgttaaatgatctgaatatcatgtttggcatgtggaaaaacactagtggggacattatctattcatttataatgt<br>gtcatgcaaataatgccccataccaaccacaccgagaggttgtgacttttatactcccttttaaagaggaaggtatgcaatgattctcatttttgttata<br>tta	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	499	186	NA	intergenic
0	chr11	104010484	104010826	1000375	0	+	14867; RIP_Alu_chr11_103_01	NA	NA	SINE	Alu	Yb8	aaacagctgaaaagtaaaatgagtaaagataacagacagttaatgggaaaagctgagcactaactgccccagtacaaattaactatctgataaacggtga<br>aagaacaggcttacatggatccaaactgaactagaaataggcttctgggacaacaatccgatcacaaacactaaagactaaagactaacacaaaagttac<br>gtgtagtagctactgctttcaagtagatgcagggtaacccagtgattttttactttaaacaacaaagactttactcacaacatcattggaatcaactgca<br>tatttccctgattcataaagaaaactcttccctagaaaccagcattaacactgcagacagtgacaacaccttgggttcttgtcatgtctt<font color="green"><u>AATAAATAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGG<br>AGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGA<br>GACTCCGTCTCAAAAAAAAAAAAATAAATAAATAAATAAATAA</font><font color="green"><u>AATAAATAAC</u></font>tgaacgagaaaaaccaaaggaaataccagtatagagaactattcagg<br>caagtgtgcaaattaaatcctaattaaaccatttgaatatcagaacaaatatagcacaaaattataatgccaattagcattttgttgatcagtcattacc<br>ataaaacaaagagcaaatataaccatgttgctttaataaggtcctaattaaagaaaaattactttagcacaaaatgcaaagaaacagcagattcacacat<br>aaacattccagcagagacaagttaaagagattgagctcacatgcaattacttagtgcatgaaaaacccgtaaatccaacaatcctctgtggccatcaaca<br>atcctctgttaaaacatgttcaaaaggtgcactcttttaaaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PDGFD:NM:033135:1/7	
0	chr11	105765522	105765824	1000376	0	-	1140; RIP_Alu_chr11_105_01	NA	NA	SINE	Alu	Yb8	tatctgtcttttatctatcttccatctatatatctacccatttatcacctttgttttatacctggctcccttttattgccactattttaggtaccttata<br>aaaatccacactcaataaaaagtgtaaaacagataatagcaagaagagagcaaaaagcctattaaggaagtgaattaataaagccataggtattagctca<br>gagaaaagtaaatcacatacacacacacacacacacacacacacacgcatgagctcgtagcttttgtaattgctttctttttgttttctcttagtattta<br>gtaaaggttcttttgcaaatgtgaatatgcttcaatttgctgagggaatgaaggagagtgttttgtttattttttggtgggaat<font color="green"><u>AAAATATGTAGCAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAATATGTAGCAATA</u></font>atcctgcagttagagtaagaagtaatgaggacttggagttgcttgtccttctgaatgcaccttggctatggttttgggatc<br>ttcagattatttgtttctttccttccctcttccctccctcctcctcctcctcctttttcttttatagtgaagtagattgtcttcctaaccaacatatgtg<br>cattgctgtttggctatctacgaaaaaatatatcagtctactggcaactgagcaaaaattgctgtcaagaggcccaggtatacgagctaacagctattat<br>atgctgagcttattatatgccaggcattgtgctaagcgtattacacagattattgatctagtttagttttcataacaaggttatgagatagatcctatta<br>ttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GRIA4:NM:001077244:6/11	
0	chr11	106595881	106596164	1000377	0	-	pAlu11-106629868;6518; RIP_Alu_chr11_106_01	NA	NA	SINE	Alu	Ya5	ctgtcattttagtagtcactggagagtcaagcatttaattaaacatgcaaatgcctgtcactgactacttttaagctcataatttaccatttcaaacatt<br>tggctcaaagtactctgaaatattactaacctccatcaatgggaacaaatactttattaatattgtgataaaaagtaattacatattaaaatattaccat<br>atactatacatgatactctaccatggcttcatttttgttttgataataactttacgtgattaaattaacttttaaaaatatatttttaaattgaactatt<br>tggtataattctgataattttagaatatgtatactctcctaaatatacaccatgaaaataaatatcacagttagaattttagccaat<font color="green"><u>AAGAATTTATGTC<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTATGTC</u></font>aat<br>aagaagatacatagaaatatcataaatatctgagttgttctctaccaaaataaaggatttcttaaataattcagtctgcaatcctaattatttctgcaca<br>gtgtaattaaatttctattgtgaaaattaatattcttaaaaagtaataacatcaattgttgcaggcttctttttaataaacatctacataaggtgtctgt<br>atacttggagatatgcttatctgagtaggagaataagatttggtggtaaagctaatctagtaaatgaaatcaaatgagataatagatgcgaagggcttga<br>cacagagtgttgcacactctaagtgctcagtaaaatgccagagatgatgaggatagtgatgctcacatctgtattgtcaggtta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GUCY1A2:NM:000855:6/8	
0	chr11	124830152	124830246	1000378	0	+	18844; RIP_Alu_chr11_124_01	NA	NA	SINE	Alu	Ye5	acacttaacttccaaaaggacaagtgtttttccaaacaatttgaatgttgctattggaagttctaggttacctccttccctgatgcctggggatggaata<br>gaggatgaagagaatcagaacgaattattccaacaacaagcccaggctgtaagtacctgttctttttattttatgtctatgatattttccctatccccta<br>aactataaatatgacatctagggtatgaggtagggattaagagttatcacactcagcttcacttttgataatcatccccctttttttttttttttagctt<br>tgtaaagtggggaatagtgggataatgctttttaaaaattttaaatttaaattcatttgtgtttggtaagatactctaaaattatct<font color="green"><u>AAAGAAAAGTGCC<br></u></font><font color="red">GCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGA<br>AAAGTGCC</u></font>aaagtgctagaattcaaaacctattagaaagcactttaggtcaagaacatggattttccaagttatattgaaattatattctaggcaagcta<br>ctattagtttgtaatttacagagagaaataattcttaccttcgttgcaaagaagttcagtatacataggtggcatttcatttattatttatctttgtctc<br>atttttcttatttttgttttttaatctgattatcacaataaatgaatctatagttgtaggttaaagaataatacatagtaaattcgtaacatatccagag<br>tttttggaaaaatgtaatttttatttaatgactcattttatatacctaatatttaaaaattaaccactgtgagtagatttcatccattcacattg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CCDC15:NM:025004:4/16	
0	chr11	132558595	132558874	1000379	0	+	15278; RIP_Alu_chr11_132_01	NA	NA	SINE	Alu	Yb8	atcactcatgctctttgaaccggcagtaaatgacaaacatgaggagaaacaagagcactaaactggtacccgtaatctagtcctgaccgacactagcttg<br>agacattgagtgtgaccttgggaaatcaaagagctttcctgggcctcagttatccaatctgaaatccaggatattggatgtggtggttgccaagacctct<br>ccaattaaaggctgtaatttagaaattgtcttttttaacctttttcaaggaatgatagtatattcaatgcagcctggaaataatgatggtatcactgttt<br>ttgatggaattggtactggataaccttacattaagtagaaccaggctgcattttcagcaagagagcatattatctaatagatacaaaata<font color="green"><u>AAAAATAGAT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAA<br>ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAGAT</u></font>aagctccttt<br>ttgtgtatttgagaaacaaattgttagtaaaatgagctgactgtgctctttgagcccctgagctgcctgccctgaggattacgtgtgacatgtaacaaat<br>cccgggaatgctgtttcagtctgtgaggcagggctccataattatttttaatacatttctaggcttgttttcagaatatacaaagaaaacattcaataat<br>gtcatctaaattgtgaagggcaattagattgttacattgggattttcactggattatgtggtgaggtttcctcacttggaataaggccctcctttgtttt<br>ctcattgatttaaaatgacaagtttataaagagcaaaaatgtttggatgactgacagttcaaattttgtggtaaagagta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:OPCML:NM:001012393:2/8	
0	chr12	5769603	5769604	1000380	0	+	3372; RIP_Alu_chr12_005_01	NA	NA	SINE	Alu	Yd8	aagctatcagcaacctccattagtactgcagaaggtccctgacttaatgatggttcgacttacaatttttcgactttacaacaggtttatcaggccatta<br>aatgcattttctacttttaatatttctgacttatgacaggtttatccaccataaccccactgtaagtcaaggagcatcctgagatatgaatccttgatat<br>acagccttttctataccatcatacgaacatcttaagccaaatgactatgaactttgaatacatctaaaccctgtgctgtggcctccaatgcttaccatga<br>tccgggctttgactcctctccaactttatctcttgccatgcaatcttttgtatactccatctcagccacactggcttccttcctgttctt<font color="green"><u>AGAACACGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCACCACAGCACTCCTGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACACGCC</u></font>cc<br>atagcaaaaccttagcatgactcctctcctcactctccacccagctcctccctcagctcagccttcaattctcgattccagcatcactcccacaatgaga<br>actttcccacgccccttgtccatccctggtccatgttattctctaccacagcacttattgctatccaaagtgatcttgtttatttattcatctcctaact<br>ggctttttaaggaaaacatcagctccataaaagcaaggaacttcaaatctcattcaacatggatccagcacttgggtcacgctgatcacagaattcattt<br>gcatggatgactcagagagtggatatcagtttggaaacaatagccgggctcattttggtggtgctccatgctcataatattgggaatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ANO2:NM:020373:15/26	
0	chr12	10234204	10234205	1000381	0	+	19912;1104685702828; RIP_Alu_chr12_010_02	NA;NA	NA;NA	SINE	Alu	Yc1	acatggggacagagtgaccaggacacacttacctccagctttgttatacagctcacgacagagtttttcagccacatgctgcagacttcctgcaagcttt<br>atattctggacttgaagagattgcaactcttgggacgtatttcctaatctttcttccatttgagaaatggtgtcttgaccagtattggagagctggtagt<br>actgaaaaactaacccaaatgaccaagtcagactggacagcttatttctatgttttatttccattttctgcttatggggaagacaaaacagtatattttt<br>tagtatctcaggctctgagttctcatattgcctatattcaagtttggactctagtacatatatgagaagttgtatcaccttgggca<font color="green"><u>AAAGAAATTAATTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAATTAATTT</u></font>tgtgaagtcatgaggagaaaatgacggctaagagggctaagatagagctcccatttggacaacagaacagggtgaggagac<br>tcacactgtgaacttttcctccaggaaccacctcaggaacataccaggaaaattgaaagaatgcacagatcctttgaaagaagcaactcaatactgaaaa<br>ttctggaagacagccaaaaatgtgtgaagtggggaaaacccacctctgaacacacatccctaatggggaacctgaaaatctgggttacatgagaaggatt<br>taacctcacctggagcagaaatggatgtagggagccaaatataaaatagatgcaaaatataaaagtagaagaagcagaggaaagagtcctgtaggcactc<br>ccatt	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CLEC1A:NM:016511:2/6	
0	chr12	42482700	42482701	1000382	0	+	21995; RIP_Alu_chr12_040_01	NA	NA	SINE	Alu	Yb8	cagactagcacaggaaaaagtctaaaaagtaaaacagaaaataaatctgttgagtgttgtctgacctgtttgtcccaagatatatttttggctagagtcc<br>ttcttttactataaaatatactaatatcgagaaataaattttggaaaaggctgtggtagtaaagtggaaataataagtaatctttgtattttcaaccagg<br>tattttgtgatttagtattttcaactaggtgtattttcaattagaaagatggatggggcttaaaagtagaacattttatatggaagttgaagttggtgaa<br>aaatgcaaaatcacaaaggaaattcagaaccagaaatctcccaggttatccctgaggttcactagcacgctgagggagaggaaatga<font color="green"><u>AAAGAACCACCCC<br></u></font><font color="red">GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACCACCCC</u></font>agtctgcaggaa<br>gctgcagtcaatctacagagaagaggatgaacttggatgtttgtttaaaacatgggttttgtcactgtagagatgcaaagagatcctaaactttggcatc<br>ttttgagcaagaaaaactgtaagcattaactgcataaaaccatcacccttggagtgatttttaaaaatcaatcacacatactcaagataaacgtctaaaa<br>ttgttttgaagataaaagttttaaaaagagatggggaaacttagccaggaacaatgtaataaaaataacaatagcacacagagtgcttgctacctacatg<br>ccaggcaccattctaagagttgtatatgactgcatgttctcattcataggtgagaactgaacaatgagaacacat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GXYLT1:NM:173601:7/8	
0	chr12	45419546	45419547	1000383	0	+	20014;238919;pAlu12-45136302; RIP_Alu_chr12_043_01	NA	NA	SINE	Alu	Ya5	tccccagagcctacacaaagaacacacccctgcttgattttagccctatgagacccatttcagggtctgacctctataactataaaataataagtacctg<br>ttgctttaagacactcagttcatggtaatttgttacagcaacaatagaaaactaatacactgggtatcaggctcactgagccaattgctgaagaaaccag<br>acaaagagcacatagttcccaccctaaaggagctcaccttcttatgggaggggtgatccatgaacattcactctgtaacatagcaccaggaaggcagcta<br>ctatgtaacatagcaccagaaaggcagctactatgcattctggtgcttaataattatttactgaataaacaagtaaatgaatgtcataa<font color="green"><u>AGAAAGATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGATCTG</u></font>aaagtgcactggcatcacaaaggaggaaatgatgagttcggagaaaacagtcaggttgagtcaagtataa<br>aagaacaataccgtttaagagagaaagaaccaaagccaattcaaacagttactagtatgtctgaaagcccaaggaataaagtctatccaaggaaaagtaa<br>gcagtcatcaaggctggggaaaggcataaagcagaggctgcatgagggcaaccatatccagcctgcaaatgggctttttttggtcttagcatgttggtta<br>agaattctgatttagttgtccacatttaaaaagcgggaagtttcacataaagtccagatttctgacacctcttcaaaggtaaccacactgggctcagagt<br>gagtagcaggtgcctcttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DBX2:NM:001004329:2/4	
0	chr12	47075367	47075698	1000384	0	+	pAlu12-46792013;18789; RIP_Alu_chr12_045_01	CCTATTCAGTTCCATCTTCCTTCTGC	GAGACTCCATCTTGAGCTGTTCCAG	SINE	Alu	Yf1	accctaatatagctagccaatttcattgccttgtatctattattttctacacactttccaaagaatcaaatgcctgaatcattgcactagtaaaagcttt<br>accccaaagtcataaacagtaaaatttttagcaactgagctatcattttgtactgggggatatatgaacctcacatatggcaagatggacttttcttggt<br>ctttttagtcctgtgaggttttttcctttttttcttttcaatcagtatctagaaaaaaaattaccttgaaatctagatactttgagttcatgtaatattt<br>ttattcctattcagttccatcttccttctgcattaattataatgcaatgaaaactaaatcaataagtttagtctccaggcaatt<font color="green"><u>AAGAAAGTATCAGTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCATCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTATCAGTCA</u></font>atgtagctctaggtagagcctttagtaaacctgaatctttaagacctctgaa<br>ctttttttaaaaaatgaaaaacgtacccagattttgaacatttgttttgtttaatactgttttgtactgtagatacagtaccaatcaatttagctcaagg<br>gtctgtttgacaaatgtcagaaccctggcgaccatggtgcatagaattatgtccaagcttcacatgtccaccatgaggccatcatatttttgactggggt<br>agagttctggaacagctcaagatggagtctccaaaaaggtgcccagcttctggtcatcactgaatgttgtgcctaagccaaagtcaactatttttatgtt<br>gtagttggcatgtagaaggaagttctagggct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr12	54245422	54245696	1000385	0	+	13247;Yb8AC1634; RIP_Alu_chr12_052_01	GCTGGACCAGGAGTCTCTGT	AGGCACTTGAGTCCTTGCAT	SINE	Alu	Yb8	gagaggtagaactcaggcaaaacttctcccccagttctgtcttagtctagttttcctgcctgaagagagacattttcaattcatcagagcttgtgcctcc<br>ctccaacttaagatctaaatgagtgttttcccacctctgtctatctactcacatcccaaatatctccaaagaaactggggaagagctctctaatggggaa<br>cgtgaacattccacttctctattagagaatcccacaaaattatgtcagagagctgctggaccaggagtctctgtttctcagtaccctgacttttgctccc<br>tccccactgctttgcttggctggaatcaattgacattgaacctgcctattgcatttaagagaagtgggagtacagaaagggtttt<font color="green"><u>AAAAAGTTAGCTTCA<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATAC<br>AAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTG<br>AGCCGAGACTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTAGCTTCA</u></font>tgttaggaat<br>aatgcaaggactcaagtgcctccctaaggatctaattttgaatctacagggttgaatgagaaactagtccatttgaggcagcctaacatggggcacttga<br>aaatggacattttctcacgatctgtcctttcctttaaaaaaataatgtaacttagaagaatatgattatcctaaaacattttattttttaattaaagagg<br>gttcattatgctacccgtctcatctcgtctcagaggaggaaaaccctgtgttcagcaagtttgctaagaaataattataggttcagatcttccccaggcc<br>ccgaaattcaattaaaatttttttgttttaagttgctagcagtcacatggtatgtatgtgtgtgtgcgtgcgtgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	467	178	NA	intergenic
0	chr12	65397292	65397293	1000386	0	+	17453; RIP_Alu_chr12_063_01	NA	NA	SINE	Alu	Ya4	cttaataaaacctatcatgaaaaccccatttaaaacttcaatctcgggctgggcatggtggctcacgcctgtaatcccagcattttgggaggccaaggtg<br>gggatcatgaggtcaagagatcaagaccaacctggcaaacatggtgaaatcctgtctttactaaaaatacaaaaattagctgggcatggtggctcacacc<br>tgtaatcccagctactcgggaagctgaggcaggagaatctcttgaatccaggagacggaggttgcagtgagcagagatcgtgccactggacgctagcctg<br>gcaacagagggagagcccgtctcaaaaaagcaaaaaacaaaaaatcccaacaacttcaatctcccatttccttccccagtactg<font color="green"><u>AGAAGGTAACAGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAAGGTAACAGAATA</u></font>aacttatgtatcatttacttattatgtttattgttgtgctcaaaatttctttcacttctttagattcactcttcacccttatcat<br>ctctgtcctgtgttctgggaagctgacatctatggtgtatatcaacaaatctcccttgctctctggcttctagttgtgttcagctataggtgacactgtc<br>aaaatgttgcatgtggggaagaaagagagtttggtgtatttccctaaattggtctgtcaaagaagactagactgctcagcacagtgtcaccaagcagaga<br>aaactcctgatcttacatagggctcaacttgaggtaaggaactcaagattggcacattttcagaggctcaaatggctgacatcatctgtagaaactttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	76298944	76299244	1000387	0	-	5142; RIP_Alu_chr12_074_01	NA	NA	SINE	Alu	Yg6	catcaaacagaccagtgtgatattattaaataggaagcacaaccctaggcaaacaggatgaaatccaattatataagggtgagagtaaggacttatataa<br>accataaaaataattatagaattggctagccaccatcactgctttaaaagacctgtgggtcagggctgatctatgatcaacgatcatgatcattgctgat<br>catgaatcagcaatatcatgtcattgtgggggaataaagctaagaccatccagggcagatgtaattcttcctctatgctctgagtacatcagccatgact<br>gtgctacaaataatattgctccctgaacttaaaaagaaaaagtctcaaatattagtattttagtttagccaataaaattggcaaagtt<font color="green"><u>AAAAAATAATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAATAATCC</u></font>tctgtgttagtgctagtttgaagcaagtatattttcatatacttctgatggaactcctaatgataccacctttctacaaggcaattt<br>gacaacatgtattaaaaacctttagctgtgaatattcttggagcaattccaatttcagtatttttttttctcaaaagaaatcactggagacagatgcaaa<br>atttagctacaaagtgtttattgcaatataatttatatagcaagatcgggtaatatggtaaaacgttggctaggcacggtggctcaggcttgtaatacca<br>gccctttgggaggccaaggtggatggatcatgaggtcaggatatcgagaccatcctggccaacactgtgaagccctgtctctactaaaaatacaaaaatt<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	84042285	84042582	1000388	0	+	237938; RIP_Alu_chr12_082_01	NA	NA	SINE	Alu	Ya5	tgaagatgaaggcctttatgatgctctacctccacttaatagtaagtatattttctcttccttttttcttaacattttcttttcttcagcttactttatt<br>gtaaacatacagtatataatacttatataaaatatgtgttaattcactgtttatgtcatcagtgaggctgctagtcaatagtaggccattagttgtgata<br>ttttggtggaggcaaagttataaggggatattcacctgcatggagggttggtccacctaacccctgtgttgcccaagcatcaactgtatgttcaaatata<br>tgtatttttatttttatagtatgagttaattggttttggtattagttttcagagctgatataacaaaatatcatctgggtggctt<font color="green"><u>AAAAAAAACAAATTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAAAACAAATTT</u></font>attttctcacagttctagaatctggaagtctaagatcaaagtgtgggcaaagttgattctttttgaagactttttttggcttgcagg<br>tgaccagccaccttctccctgtgtcttttattgtcttccctctatgcatgtgtctgtgttccaatcatctcttcttataaggatatcagtcatattagat<br>taggtctcacactaatgactgtattttaacttaactacttatttaaggcctatatcgccaaatataatcacattctgaggtactaggggttaggactaaa<br>cataaattttgtggagatgaaattcagctcatcacagtcctcaattaatccttatctttataaaatcctaaagcaaaggaacctaaacctagaccaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	86523326	86523636	1000389	0	-	pAlu12-86456173;17348; RIP_Alu_chr12_085_01	NA	NA	SINE	Alu	Ya5	attagtcagtactaaccaacattgtcaaagaaatgcatcttttataagactaaatttaaatgtttatatttttgatgaaaattatttgtttaaaaaccca<br>caggctcatgtgtcagctatcctttgggctgtaaaaataaaacaaaatcatttatctgcttttcagggaacataattccatcagtataggcaatcataga<br>tacttgtttaaaaacttcaacttaaatcctacataaccaactttcatcactcctcagagttaatgctctctatctcttagtaaaagtatcccaattccag<br>agtgtctcaggcatttttcacacagtgcatgtgctttatgttgtaggggtagactgatttgctaaagttggaacaggaattaaaagaagtt<font color="green"><u>AAAGATTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCGTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGATTGT</u></font>gtaagcaaaaactcagttgtatgtaagcaaacccagttccccgtgaggaagagaaaaaggctggagtcctttaaaattaa<br>ctctctgtttttctctctgtggctagtgagccttatttctccctttcccaggcattgtgaagactgtttctctagctgtgcagctgcaaggtcactagac<br>agataatctcaagttgtaaaacatgttgttccttgaaaagtaataaataatgtaatgcatgtcttaattgaataactgtctttgtttctcacttctgtaa<br>tatgcttccccctgcacagatctccccccaccccacgaaatgcttaaaaggtagcttgactctttgttcggggctcagtcctttggatgttaatccgact<br>gggtcagtgca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MGAT4C:NM:013244:3/7	
0	chr12	88338172	88338173	1000390	0	+	239047;1104685533784; RIP_Alu_chr12_086_01	NA;NA	NA;NA	SINE	Alu	Ya5	ggtgggttatttagaactttttaggaaaggggaaataacttctgggtcattgccatggaaagggttggtaacgtctatgttacaaatgccatggcatttg<br>taaactggcatggcattgggtgggagtgtcttatgctaatggacaataagggcagctatggatatcttccattgccatctgctggttcttgccagtttct<br>tcacttcatcctgttggaattaagaaataagtcctgttgatcctctacctcaataagatccaagaacaacctctttttaatattcgaggcactgtaaggc<br>agtggcatagtttatattctctaatggaaaaatagaaaactagaaaatagcaaaggtaaattctgactagagggagatatagaaattta<font color="green"><u>AAAAGAAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAAAATG</u></font>tatccttttgttgtaacatgtacaagttattttttaagatgtaacagctggaacctatagtacctaactccaggaacaatggtgactattttt<br>taatgttgaaggtgaaggaagagctatcacaaggcaaaaatccaaaaagtttctcagcacatgagtagcatcttccacggaccccttgggatccagaaga<br>ggtcaaatccctcagttatatattatagctccacgtagcttgctttatgacaaccacaaacatgcaatatattttgtggttattttatttgtgcctttca<br>cacctcctcaacagtaagcttcataagagcaggaacctgtttgttttggcttaccatttaatccccagtttctagcaaaggaattgacatataata	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	94358345	94358640	1000391	0	+	Yc1RG189;963; RIP_Alu_chr12_092_01	CAAAATGACAAGGAGCCCATAG	ACAGACTTAGTCCCAGGCATTC	SINE	Alu	Yc1	tttcaaagtcactcccagattttagttatttgttatatagcatcccatttctaggtaccaaaatccatatcacttatttttgctatataacaaattaaca<br>cttagtggcttaaaacaacgtacatgtattatttcacagtttctgtgagtcaggaattttggagcagcttagcttggcagttctggctccaggtttcata<br>tgaagttgcagtcaagatgttggccaagacatgtacagaaaatagctatgggatcagaaccccagcctcccagatggaatccaggggaaaggccagttac<br>acagtctggacctcacagtgagggatgaatgggaaatcctcccctccaaaatgacaaggagcccataggccaagaattctgatt<font color="green"><u>AGAATTAGGAGCTGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAGTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>TTAGGAGCTGGG</u></font>tcaggctctggccggcatagggaatgcctgggactaagtctgtgagtggcagaactttggtgcccaaagccaggcagggataggctca<br>cattaggagctgctgcatgacagccctctcagcatttggggttagttaccacataacataatattcaaattctttatccttcagtggcctttctccagcc<br>acgctctacttcatcaaagtccttctgattctgtggtagttaatgcctcaggcatagtctgtccagtgcagagaacagaggggccattaaacgcatccag<br>aaactacgcccaaggggcttatttctgggatgaatcaaacaaaaggagattgtcatgacaagaacttgggtaaggattgagaaatgtctctagatt	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	53	409	97	NA	intergenic
0	chr12	96705364	96705365	1000392	0	+	8929; RIP_Alu_chr12_095_01	NA	NA	SINE	Alu	Ya5	aaaaaaaaggtaatccaaaatagtaaaggcaaggcatttggcttttgtattcacaggctctaacatattatttcttagtgataagtaattgtaaagtttt<br>attgcagttgcaaagttacctacattgattatatgtaatatactcatggcaaaaacatttactgtaagcaaaagtatacagcgaagtgttacagaaatga<br>aattttgcaacctcagtaatttttgagtcctttcactggtaaattcaacttgaaatttactttaaatttattataccatatagtaacattaggcaaacac<br>taccacaaactctgtgatcagtttaaataactaaccaagtagacattatatgatcttgtatgcaacatggggaaagagaattgta<font color="green"><u>AGAAATGCCATTAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAANAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAATGCCATTAAC</u></font>ctttatttaattatacaatgtgagctgggataaacttgaaaagaatcttgcctatatcattgtatcaagaaatttaagcc<br>ctataaaaagaaattcctcccattcataacagcagccaaaccatgaaacggaatggagaggtataggaactgcataaatatttactgagaaatataagac<br>ttaagtataaaaacatacaatgccaccaaatggtaagaataagtaaggagaagatactggtcctccctatattaattttataagttatataaccactaag<br>aaatcacaataagcttattcttagaacaaaataaaatgcctaaaatgtatcaatagaataaacagaaaaaatccaaaaacattctaaaataagaaagagt<br>atatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CDK17:NM:002595:4/17	
0	chr12	102314081	102314162	1000393	0	-	13652; RIP_Alu_chr12_100_01	NA	NA	SINE	Alu	Yb8	catgtgccaccacccccagctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgc<br>ccgcctcggcctcccaaagtgctgggattacagatgtgaaccaccacacctggcatacttttatttttaaaaaagatatatttactttgtattatttgga<br>actagtaagtgagacctcctaaaagaaaacaaccaggatacatgactattaacatcaaacagcagaggacatatgaaaatctcattggtgggagagctat<br>taaagatgcctcccattgggaataagctaacacatgaagttgcacaatccttacagatttttctcaaacacattaaggataa<font color="green"><u>AAAAAGAAAGTGCTCTTT<br></u></font><font color="red">GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAAGTGCTCTTT<br></u></font>ttaaaaatgcaaaatgtcttctgcaaatttttactaatcctaattgtccgcaatttaaaacatttgaattgataaacacctacctggaaatcttggatga<br>aagttaggaagtagaaaataaaaccaaaggccactgtccattcacagatcgcactcactacgtgatatacataatcctaatgcaataataaagaaacaga<br>atttagccgaaaaagactcactttaatgtacatactgaaatacaatgaggagtttcaaccaaaggaaaaagctgtccagtgagcataagtcagaactttg<br>aggatatacggtaagcacaaccacgttactaagtgtcagggcacctgcccactgagaatgcgaaggcaggtattccaaagtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DRAM1:NM:018370:6/7	
0	chr12	104293408	104293724	1000394	0	-	pAlu12-104226260;14809; RIP_Alu_chr12_102_01	NA	NA	SINE	Alu	Ya5	gacagattgttcttgccaaaataaggagaaatgtttagaatcattttccaatactagtaacactgactttattgtcaacattattttcagaaaaaataat<br>tatagtcaccaaaaatgtgattttaaaaccactcaacatatatattttccttcatatataaagatatatatctataagcatcagccatgagtattttttt<br>ttttgcttagaattaatttttgctgattatattagtgctctatgctctgtgactgtcaggcagtatatacttcctgaggttcattcacattcaccttgtc<br>atttacactctatgccaaccgtgtggaagaggcagaggatccacacctctgtgggctctgacaggggctgcttgtgagccatctacac<font color="green"><u>AAGAAATGGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGGGGG</u></font>ccacacatggcttgaaaacaaatcattagaaaaaatagtattttaaaagctcctgatgatctgtgtgttca<br>cattcccttcacttctctgggcctcagtttcctcatctacaaaatgaagggtctggactagcctagatgatttccaagaaccccttctgctctaaaattc<br>tgtcgtttcagttctgaaatctcaacgatgcccataattttaaaggtttttaaataaaaactcaagggatgaatcatcagctgaatttctttctcttccc<br>tttcttgaaaatcatttttcattgtttgacataagctcaatctctatcttttctgacaccttcactttcttaatgtcccacattcataaaaaaagtttca<br>agtaatcgattttatga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC253724:NR:027249:4/16	
0	chr12	123010352	123010668	1000395	0	-	19405;pAlu12-122818682; RIP_Alu_chr12_121_01	NA	NA	SINE	Alu	Ya5	ggcctgagaatttgcggtggagaaaggggctggggaagagaaagacgatcaggagtggtctctgaaaagtattgggtcaaaaaggcagtgtctgtaaagg<br>gtagtgtgggagaagagagcgacttgtagctatttttttttttgtacgctcaatgagatgcttctagttgcataatttcaattagtgttcgtccgtgtaa<br>accttattattgtgtattaacgagctaggaaggtattgctgaaagggagtgaaaattcaacttaaaaggttgtggaactaccaattctgactgatgcgcg<br>gtttccgaagtggcccgtgatgtaatcaatttgaagtccgagaagcgttacagttaagtcttgtcactgaccttgttcctttaaatt<font color="green"><u>AAACTCTTCGTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAACCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTCTTCGTTG</u></font>accccagaggagctacagttcgtaaattatctattctgaacaataagcctgcgtgtgtataagataccca<br>attctgacggatccacattattttgtgcttacctcatttttattccgttaaaaggaaaatgtaaagattttgcattcctttttactgactaaaaaattac<br>atcattttcgataataattatgactcttaaacatagtgatagttttaaagtttgctcttcctaacgattggaatgcctgggattaggcagatgattttct<br>ttttcccccatacccctctattatttaggtgattgagtttaaacccgtttcttttactgtcttcctttgtttagtgttttgggcctcagtatacttaaag<br>agtaatactatttttct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RSRC2:NM:198261:1/11	
0	chr12	126905117	126905415	1000396	0	+	Yb8NBC225;2166; RIP_Alu_chr12_125_01	GAGTCCAGCCCATTTTAGCA	CATGATGGTTTGCTGCAACT	SINE	Alu	Yb8	gcctcccgggttcaagcgattcttctgcctcagcctcccgggtagctgggattacaggcatgcaccaacacacccagataattttgtatttttagtagac<br>actgggtttctccatgttggccaggctggtcgcaaactccccacctcaggtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagcc<br>accgcgcccagctcaaattgcattttaaagactgcaagcaaaaattgctttatttgggagtttccattatgatgacacagcaaaaatctcagtgtatccc<br>ctacagtctggttcaacaccatccatctgactgagtccagcccattttagcatgggacattgagtatgttttcataactgttatc<font color="green"><u>AAGAAGTATTTTTAT<br></u></font><font color="red">GCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCGGGAGAAGGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAGTATTTTTAT</u></font>atgcttcacactaattaaaagatgataaagtttgatatgagaaattaaatgacatgtttgtgctgggtaatattccagtggcctct<br>tggcacataatatggttaatatttcattgtgttaaattagagaaggggttgtaagagagttgagtcactaaagcatgcccagggctctagactaactgaa<br>ctaaatatagcaaacaagcataatggcctcgaccacaatcatattgcaagcagtggacaagtttcagaaaaagcaatactattatcacatttaaattgaa<br>ctgaaattggtgtgcagttttgttttgcatttaatgtttaaatagatcttagttgtatacttctgtaagggcaataaacataagatatctattcccaat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	449	135	NA	intergenic
0	chr12	127199964	127200287	1000397	0	-	pAlu12-126923812;Yb8AC749;14203; RIP_Alu_chr12_125_02	CACAGGGTCAAAAGTGCTCAATA	CATCTCATGCTATGGTGTCTCAG	SINE	Alu	Yb8	tagacgtggcttctgatttttggttgcaaatgggtttcctttcctctgttagagtttgcacaagttgttccctcttcatatagcagagaggagattctca<br>ttctaaagccagccagatcagagcaatgactgcactcccagtggagaatagtgttgggttcacacatgacaggatgtttctaggatttgcattcattttc<br>tctctgaaagactatgatctagcttcctaatcctctatagagtttgcaaagtgttctaaagaaactttccttccttcctcccttccctcccctcccctcc<br>cctctcttttcttctttcctccatctccctgcaaaatgttcacagggtcaaaagtgctcaataatggtttacagggtagactttt<font color="green"><u>AAGAGAGAGACATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGAGAGACATCC</u></font>atattggctaaactaactaagcaccaactctgtgctgagcgctgctttaagagtcgtactt<br>tcatcgtcttatttaactacaacaacctctcattcttatttaacaacaatgaccttcctcattcccgttttagagatgaggaaagtaaagcttggtgctc<br>aagagcttgttcgatgtatacttagagagatagtggaagggctgggatctaaatcagacaggtccggctccaggtcccaagtgcctgagacaccatagca<br>tgagatgaagtgctaagatcacttcaagcatgatgcagggagggattggaggaaagtgatgtgagttacatttgcaccacagatgacttgcctgtggtgg<br>attactgtgccagggagattgttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	667	328	NA	intergenic
0	chr12	127660443	127660752	1000398	0	+	668; RIP_Alu_chr12_126_01	NA	NA	SINE	Alu	Ya5	gaaacagagtcttgctcgtcatccaggctggagtgcagtggtgcaattttggctgactgcaccctctgtctccagagttcaagtgattcatgtgcctcag<br>cctccagagtagctgggactataggtgtgcaccaccatgctcagataatttttttgtatttttaatagagatgtggtttcaccatgttgcccagactggt<br>cttgaactcctaggctcgagtgatctgcctgtgtcggcctcccaaggtgctgggattacgggcatgacccactgcacctggccatatttttaatatttta<br>atctgaacaatttagaatagaatatagagaaaacataaagaggaagagatatgaatttaagtgggtatatttcattggacgagt<font color="green"><u>AAAAACTCATTGCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAACTCATTGCTTC</u></font>aggtcagtggacatcgtacctatcatcacagatttcttggtcaaagtggcacccaccccaagacttacgtaagt<br>gtttctattggtcaagtgcagtagttcacacctgtattcccaatattttgggaggccaagttaggagaatcacttgaggccaggaatttgagacgagtat<br>aggcaacataacaagaccccatctctaaaaaaaaaaagaaaatagcaaaattagctggacaaggtggttcatgcctatagcctcagctactctgcaggct<br>gaggtgggaagattgcttgagcctagaagttcaaggctgcagtaagctgtgattataccactgcaccccagcctgggtgacagagtaaggccttgtctca<br>ataaataaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	130060304	130060618	1000399	0	-	449; RIP_Alu_chr12_128_02	NA	NA	SINE	Alu	Ya5	gcatatatgtttatacacacctatacacatacttatagacacacatatacaaatatatacatatatatattctgttgttctgtttctctggagaaccctg<br>atacagtcaccattttcatggagctcattctgtgaatctattttaattacaaatccagataattattaattgtaaaacgttatagtaagaaaaacccaag<br>caacacttaagaagaaattgctacagtttcaacccacaccatttggagttaatttttcgggcagcattatcgcggagatggtcagtgtaggtagagggta<br>tgcaaagagaaagcggagcttgcatgcaaagacgcatgggccgaaattggctcccacatgtgaggactggcctggaaaatactt<font color="green"><u>AAAATGTATCTATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGTATCTATCTG</u></font>cagacataattgaattaaccatccacaaatctacaggtttcattccagaaaaaattcattccagaaaaa<br>cggaatttttgtctttcattaaaaagtccaatctgaccactaggcccgcgtttctccttggtagcaattggtctgagctttctggcatttacggatttta<br>gcaaggcaggacttctcagtctggcacatggacgcagcgctcactgccttctctttgatacccggtttgtttaccttaccaaccggccccggtaatcact<br>tcaggtttgaccattgcagtcaaggatatcttcacattatttagtgagagatgtctaacaccagcatgcaagcgagtggcaataaattatttcagcagac<br>agccgctggggagcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TMEM132D:NM:133448:2/9	
0	chr13	21730918	21731223	1000400	0	+	pAlu13-20660817;20606; RIP_Alu_chr13_020_01	NA	NA	SINE	Alu	Yb8	gatgtaaaacgaatgctcaaaaggaaggtcatcaattataaaaattatgaaaggagaacatgaagtatcagctataattttttcatgcataaaggggtga<br>tatagtaaatataaggcttccttccttttacaaagaaataaggagagatgaagcaaccatagggaagtggaaactatataattttcataaagacagaaga<br>tgctccttcttcatgcaatttattatatcttccagaaaagcagaaaagacagagaaaaaaggataacaagtactttattgatatcctagcatgagtcagt<br>tctaatggcatctgagtattttccgaagtgatttatccttctcatgggtctccataagtcaggaagacttctagaatggctatt<font color="green"><u>AAGAATTCCACACGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAACA<br>AAAAAA</font><font color="green"><u>AAGAATTCCACACGTG</u></font>taagtaataattgccaaacactgtaactcctattaaggagggggactgtcaaagaatcagactggttatttagaattg<br>gcagttgttataagtcattagtaggccaatggtaactgctgttaaatactaaagaatcagatacagtcaggcatcacttaacaatagggatacattctga<br>gaaatgcattaggtgatttcatcatgtgtgaacatcacagtacttacacaaacctagatggtataccctaccacacacctaggctatatggtatagacta<br>ttgctcctaggctacaaacctgtacagcatgtaactgtcctgaatagtgcaggcacttgctacacagtgataagcacttgtgtatctaaacacagaaaat<br>gtacag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SKA3:NM:145061:7/9	
0	chr13	22523532	22523848	1000401	0	-	pAlu13-21453430;Yb8AC1648;14345; RIP_Alu_chr13_021_02	TGCAATGGGCATCAAGATT	GGAGGTTCTGTGGTTGAGGA	SINE	Alu	Yb8	attagtgatattaatcattgtcagtttatttttcctcctattttttatttggttaggtgctgacatgtataagctttaagtaaatggaacgtccacttgt<br>attttattgcttgtcacaaaccctcaaaccacagcaacagtcacagtttatgttagaaacagcaaaatcgatgtgaattctggacttgacagtgacagat<br>ggaggcccttatgcagatgtgctcgctgcttcgcaggacttgaggtccttgggaattctgtgtgttatttgtgagacaggtgactcggaaggcagtgtgc<br>ccaggcagcagctcccctccagctcccacccacaggactgcagcactcggctcatttgcaatgggcatcaagattgactttcttt<font color="green"><u>AAGAAGTAAACCCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAAAATA<br>AAATAAAATAAAATAAA</font><font color="green"><u>AAGAAGTAAACCCAG</u></font>aaacatagaagcctgtggctatgtatcaactgccttcagggtttccgcagtctgtcctcaaccacaga<br>acctcccaggggaggtaaaagctgagctcatggctgggaaccagaacaggagcctcacgcagtcccagaactgctgggtgacacctggtaagtctcatct<br>ccctttgggacctggtctcctcctccaaaaatagtcagtagttcctacaatgcacattttaaggttttcatgctcaaaaaacatctgtgagcacttacta<br>tttactgggagctgagtgacggtagggccatgtgttctcactggggaagccatccaacacactcccttccaggtaccatcctctcacacctgaaaccctc<br>cacatatccgaggagga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	450	118	NA	intergenic
0	chr13	24057657	24057973	1000402	0	-	238197;pAlu13-22987554; RIP_Alu_chr13_022_01	NA	NA	SINE	Alu	Yb8	aagaagtcttatctgagattcctcttatggaacaaagttccatcaaagccaatttaaaagcctatgtaaaaataataattatttttgctgcactgcatac<br>aaatacttaggccaagtataataaccaaaccagccctaccatgatttatctttagtaaaatggggaactggagagagaaaaaaattatttcaaaatgatt<br>atatatctgttgttagattctagtcttgcctaatgtttttttccaatttttattattttctacagtttggaccaaattctaatttttcttggctacaagt<br>cttcaaaataatgttttcaatttttttccgtctctttttcatttttcctaatttgaagtcactgaaaactaagttgttcttcttt<font color="green"><u>AAAACCCTGCAAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACCCTGCAAGCT</u></font>gaagacagacaacttaaacttcggcagaaaataacagtaacctgtttacatacataaggcactttcat<br>gcctgcctactaatgtatggacttcagagtaatgtggcccatatcaaattttttttttgagaaagggtatctatcactctgtcacccaggctggagtgca<br>gtgatgcgatcttggctcactgaaacctccgcctcctgggttcaagcgattctccttcctcagcctcagaaatttgagacaggtctcagtctcaaatttc<br>tgaggctcacactcctatgcaaggaaggaaggcaacatgttttctaatgccacatgaaattaaagcacaaaatgaaacttggatgcttgaaagaacagac<br>tttctgtaagttattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	24069369	24069660	1000403	0	+	14819; RIP_Alu_chr13_022_02	NA	NA	SINE	Alu	Ye5	tcctgggatctttaaacagccagagtaaagaaggcatccaagaagtttcttcatttcccctttccttaaaagtcaaacatttggactggacacggtggct<br>cacacctgtaatcccagcacttttggaggccaaggtgggtggattacctgaggtcgggagttcaagaccagcctggccaacatggggaaagcacatctct<br>gctaaaaatacaaaaattagctggaagtggtggtacgtgcctgtaaacccagctacttgggaggctgaggcaggagaacctgggagatggaggttgtggt<br>gagccgagattacaccattgcactccagcctgggcaacagagcgaggctctgtctcaaaaaaaataaataaataaaataaaagtt<font color="green"><u>AAACATTGGAGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCGCTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAACATTG<br>GAGTTCC</u></font>ataaaaagtcaacaaagaaaatgagggaagggactcctcaaagaaataatgtaacaaaatctctcagaacgaagagtcatgagattccagatg<br>gaaagagccagccaagtagccacgcaatttaagagcaccatcataccagggcactttgtccgaaattttcagaattccaggacaaagagaagaggtttaa<br>aacttctaaaggtaagaaaaaagaaattccatgtaacttcagagatctcaacagcagtagtggaagccagaaggcaatggaacagtggcttttaaaattt<br>taaaggaaaatgttttccatcttaaaattacataagcccaactgtaaatcaagcatgaggacatataatggcatttttaaatgtacaagttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	29891573	29891874	1000404	0	-	pAlu13-28821469;52564; RIP_Alu_chr13_028_01	NA	NA	SINE	Alu	Ya5	acagactttatcccctaagtatctgaagttttccctccacttgcctgtgaaagcacatgccacggggctgaccctgccctggccccacagatcagctccc<br>acacagggaacacgaggattgcagacgcagacggagcaaagcaagaagagggaaaagcaaaggtggccacaacgcaagtgatgataatcactccagtgta<br>actggaaggaggtgaacagaaaacatgaatgatgtaatcagaaaagacagattctgatgccatttgtaagatgaattgaatgggaacagttcaaggtagg<br>atttatagggattggatagaatgaagaaaggaaacattatctcgatcagaatatatcaaataaaagaggaaacctggatgagttataaact<font color="green"><u>AAAGAGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAGAGAGA</u></font>gagagagcgcgcgcacaagcgaactcaggagagttagatgcaaggactagaggaaaggaaatcagttttcagctgccaatagtaatttt<br>ttaaatattaagaggaatatctgatattgaggcactaaagttaataggagaaacaatctgaatactgggaaggtggattttaacctatttaaggtttgtt<br>ccatttcaacacacatgtactgcatgcatgaaggtagaaattgtagctaggaatttaagggagaatagggaggtttctgtattcaaatagaggcctagaa<br>aaattaggcctccattagaagcctaattattacctggataagactaagggataattaattctgaagattattatgaaaagataaggacagaagagtgaac<br>aa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MTUS2:NM:001033602:4/14	
0	chr13	29954772	29955081	1000405	0	+	30989; RIP_Alu_chr13_028_02	NA	NA	SINE	Alu	Yb8	tagagacaccttccattggggaacactggctcagaacagccaacactgacccttatgccagacagccgtgaatctcagtgacattacagaatagtttcag<br>actgtaaactcccttgtgctactgtgaattttgttatttgaagcaacatatgtaaacacttgcttcatctttaaagacaaatagtttgaagtggggagtt<br>cccaagaagaagaggattcctctgccctactcatttctctgggggtttgacttggcataaccagtgagtcgtgatgtgttgattgtctcactaacttcca<br>ttcctaatagattgaattgttcagctagaagaaggaacacacgagaggagatgggttcatgggtcagtccctttatcagtgaagat<font color="green"><u>AAAAGACATCAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGACATCAGCT</u></font>ttggctgctgactctcatgctggagggcagctgtgactgtcagcttgtgcatgcccctctaggaaaatctacattg<br>attttaggaggatgatgctgtagcaagggaagaaagaggtggaacaacccaaatgagacttgaagctgcctaggatcctttctgcagctgggaacctaca<br>gctgggctctcaggggcatgtatctgggcttctgcccagatacagatgctggtattgaggaggagagaggaagctctgtgccaggaaaaaacttaggaca<br>gataaagtagactagatagagtgagaagaaagtttgcaactgtggcaagcaaaggaggaaaatgcccaaaattcccaacacaataaagcaaggtttgata<br>ttgtgtaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MTUS2:NM:001033602:6/14	
0	chr13	42155117	42155437	1000406	0	-	pAlu13-41091650;13462; RIP_Alu_chr13_041_01	NA	NA	SINE	Alu	Ye5	aaaaagaaacttaaacgtattgtttctgtgaaggcatataaaccatatcctagggcagtggttttctaacagtgtaacaagaacctttgaaggatgtttg<br>gcagtggaggggggcagtgagtaggcagcactttgtgccccattgccctccatccccaattcaactacaacaatttcacatgtatagataatgcaggatg<br>tttcataagctgggcttttgtgcagtatttcatttgaaggaagggttccactgctaacaaatttttaaaggaaaggaagaattagaaagccattgtgtta<br>gggattatgtaatgtactggattattatttctcacaggctctgagggctttctttctggaaaaggtgccattgaccctctgatt<font color="green"><u>TAGATGACTCACTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACTCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGACGACAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA<br>ATAAAATAAAATAAAATAAAA</font><font color="green"><u>TAGATGACTCACTCTC</u></font>ccttgacagaagaaaacaaggcattaggtgttcctaaaactaagagaagcaggctttctcatt<br>acaattcttaaacataccattaagtttatatagaatttggggggtaggaatggccttggaaattattttcaccaacctttttgttttacagaagagaaaa<br>caaagattcaaagaggttcaatgctttgcccaaggtcacaccgttacagtgcaaagccagcacttctgacttccacttcagggctcttagttgatgtttc<br>atccctgtttcttatagctgttttatctctgttcaatttgatttttttaaactgtaattcaggagcaagtgtatcatttatgtaaggtactctgtcttct<br>cctacccttggcacctcacca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KIAA0564:NM:015058:42/45	
0	chr13	74074922	74075239	1000407	0	-	237949; RIP_Alu_chr13_072_01	NA	NA	SINE	Alu	Ya5	tctggagagccaccgtttcccagttcatagatggtgccctctcactgtgtcctcacaaggtggaaaagggagaactccagtgctttcagccccttagcag<br>ggtactcatcccattcatgaggctctacccacctcctaatgccatcacattggtgaataggtttcaacatatgaattttggggggtacacaagcattcag<br>accatagcactttccaaggatcgctttgcagtttcctattctcagatgaacacattcctaaatgtaacagatctgaaagtgctggataatttgaatgaat<br>gctggttacgcaaagaaggcatatatctttgtttgataaaaatttgttacaattctctgtgaatggagaaaagatttatcagataccttt<font color="green"><u>AACAAGATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>AGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTACGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAAGATAG</u></font>aaaaaagccaaatgcttctctcttagataaatagaaatgaaggtctgtcttacctattagaccttgattgta<br>agtcattatctcacaggggtctgttttacttaactaggcccaacatccaggtcaggaagagcttttcctctagccgattcatatgtgtattcacctaaca<br>gatgctttaaacacatattctctgcaaagctgtatggcttcgctaggagtagagaacacagagatgaacacgatagggtctttgtccctgataataactt<br>aaagatccatcaaagttgtacagtaagtaacaataagatttctgttacagcacagtgccaagtctgagctcctgcctcaactttcacagattaatccttc<br>atagaaatacattaatca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	79661082	79661402	1000408	0	-	6509;pAlu13-78597629; RIP_Alu_chr13_078_02	NA	NA	SINE	Alu	Ya5	aagctgttcatgcctaacttacctttctcaatctatttcacctgcttccattttttttttttgtttagtaaacatctgctttctattagattgttttatc<br>cccttaaccttcataaatgacaattaagtccatctagtctgtcaatagcatgtcatttatttgttgctacagctgagcctgaccttcattgattttattg<br>gagtaatttgctggaaatgattttttaatgttggatttattgcccaggcacttcattgtcagataattgaagtaaattgtatttttttttcaaaccaaaa<br>gcaagaagtgcaggaaagagatatatatattattttgaataattatttcctattgggaaatattactattgaggtagagagacatt<font color="green"><u>AAATGTGATGTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATGTGATGTCAT</u></font>atacttttcaagtttgcaaacatagattgttcttgagtcgtgcacacttttctccctttttggct<br>tttccttaaggatagctgaggtagaaataggagttggtaatgaattacattcaaaaatgatgttgcaaattagattagctatatacctaaatctatcaag<br>tagctacaccaccacctcttacataatgggccttgctattgtgatttaactgcaggttaaattataaatatgctgatgttacatagttaatcttagcttt<br>tacaaggtattatcttattccctcagtatcagtgttaacaaggcttttttatgttgtgcgtttggttctccaaaaattttgattgtctgcccagatgata<br>attagtatttcagtccctaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	80199094	80199095	1000409	0	+	22268; RIP_Alu_chr13_079_01	NA	NA	SINE	Alu	Yb8	gaatttttttcatattttactggccagggacccactgatgtaggtctcaagaagttatatgtatcagaataactttggagcttcgtcaagttattcacat<br>tgaccccttgccccagatttgacatatcccccttttcccaggctgggatctactttttctaagttaatacattgtgtgtcttccccaggattttggcagg<br>tatcccatagtacatatcaaaacatgaaaggggtaaaagaatgggggcagggcaaagttgtatagctttgaaatttctcacgggacattctgatacccca<br>gccttcaaccctcatttgaagacagttcttctctacatagtgttaggagggcttacaagtaattttcagggactcacgttaactta<font color="green"><u>AAGAAGTACAGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAGTACAGGTG</u></font>cctacagattgattggggaaataagctggggacaactaagtaatatggaggccatctatgtagcctgaactatcattg<br>cgtgttaaagtaacagattcaccatcattaagatttaggcaagaggaagacatgcttagctttcaatgggcaggaacctgctaagttactgaactttcaa<br>taaaggatatagcgggtctgattttgcttggccgtttttcagattttctgtgctttaaaaagattttgtgaatcacagaatgtcttctgtttcgtggagg<br>agttgctgtgaaccttccatagaagatggtatgccattttaccactttgtttataaaatttattcatattggtatattcattcaattactcatttaataa<br>attcttag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	82889212	82889537	1000410	0	+	Yb8NBC480;239124;pAlu13-81825749; RIP_Alu_chr13_081_01	CCTCTCTCACAAACAGTGCAG	TCGCAAGACACAGGCTATCA	SINE	Alu	Yb8	ctcattattttgaacactgcacactagaaaaatgcttttttctctctctcttttttggtagattgtgtatgaataatgggataaaaattggaataaagag<br>aaagtatatgatactcaccttcatctgtcttcagagttttagatgatctccagtctgtttttctaaggttagaagacaagacaagtatgaataccttaca<br>taacacctactgtagttaattttaaaggtcactcttttttttttcaaaaataaaaatgacaaaaagttactggctcatctcgtcttttctgcttttcctc<br>aagggccaggtctctgagttcctctctcacaaacagtgcagtgatattatgtattactcttaccaatttgtgcatgtgatttt<font color="green"><u>AAAGATGGTATCATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATGGTATCATTGG</u></font>gatactttgaataatgatagcctgtgtcttgcgaatttagctaagaatctttcctct<br>ggaatcatttcagatgaacagtaaggtaaaatacagtgaagacaggaaaactaccgattctttgaaggcagtgtggcagcctctatgtcctagttttgtt<br>ttctgttaatgtttattcaaaatttaaaaactcaaataaaaaatggtattccaaattttatgcctattacaaattaactacaatagaaaaaatagagtat<br>tatattctcttctaaacttagttagggtaacataatttaaagtgtattaatttgtcatgaattattcaatcttgtttctactattgtggtgttctcacat<br>gctgaatattaacttgtagacatcaa	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	65	457	114	NA	intergenic
0	chr13	90421384	90421520	1000411	0	+	16768; RIP_Alu_chr13_089_01	NA	NA	SINE	Alu	Y?	ctattagttgtaccttaaagtttctgagcctgccttattaaattttcttttacatttcatatgcttttgccaatttgcagctctttctaagagaattcca<br>caattccatattccacatgactaataagttgtatccattttgttctttgacaaactaactagtttatttatgtgtgagattaaaactacatgaagtttct<br>ggaattataacggttcccagaattacacattttgtgataaaattagtggttctaaagctatatggatagttaagtaagaattcccttcattttcttgaaa<br>ataataatagagcccatgattttcccagccaactggccctcgggattttcttttggaaatggacctgtttactgaaaattaatt<font color="green"><u>AGAAATGACCCACCTG<br></u></font><font color="red">CGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGACCCACCTG</u></font>actttgactaagaaatttgctgaatttggcatctagaatagtatttt<br>gtttgtcttaaataatattttacacaaggcgagattagaaatcatacacacacacacacacacacgcacacacacaaaaagaattgatactctttgataa<br>ctttttgtcatctgctaacaaatgcttgtatccatgacagaatcctgcctgagaattttgttctttgtaatatactacctggagggaacactgtagtgaa<br>tgcagcctcacatccttcacctacctttattagaaggttacaccacacagcaagaagaatctaatgattttgaattaccgaaattgtctttgctgtttca<br>taacagcgtataaaattaattgtccaaaaccccactt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	90550562	90550563	1000412	0	+	5444; RIP_Alu_chr13_089_02	NA	NA	SINE	Alu	Ye5	ttctcatctattgtgttctacctttctttgaaagcctactacttagaacaggctaaaggtggtgcagttctaatgagctagaatttgttaattaagtggg<br>gagtttttcaacaccaactctccaatatggccattgaaaggatggaagcatctgagctatggagaaaagtcactgcaacatacagactttgcagagcagc<br>aaaatcaaaagtaatccaagcagcttattcagaatcagaaaagacaggagaattaggcacctcaatgagctgactcagaaacaggcacaaatcataactc<br>tttttctctaaatattctaggaaaagaagaatccttgaaagtctatgatttcttatacctaagggaatgtgtatcaggagagaggt<font color="green"><u>AACAGGAGACAGAT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGTCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATA<br>AATAAATA</font><font color="green"><u>AACAGGAGACAGAT</u></font>ctgagattaaagcagttttccttgaaatccattatcagcagatacgaaaataccaattttaagattgcctgtttcatt<br>ttggggccagtcctcctctttagtcaaactttgtacccctgggctgtatgttatgacagttgtcacacccaccactgatccaaacaaagaatgtctggaa<br>gagttcaatttaattctgtaattgcaacagaaagaaacagatgaaaaacatagaaaatgcttggttgccatttgccaatttaggcaactgctctgatata<br>atatctactgttcaagcaaatactaatcacctacatatctgagtactaacttaaatgtacttttaagtttctgataaaactcttatgagcacatgtcaca<br>ttcttctg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	92279265	92279583	1000413	0	-	22344; RIP_Alu_chr13_091_01	NA	NA	SINE	Alu	Yb8	aaacttcaatgagtccaagtagacaaactttattttatatttcaagtacctgtttcaagattcaacccaattagagatctccccagtgtgtcattttttc<br>aggccaaggacaagaatcaaataatcctttttattattattcaaacaccatctatagagatttagagtctgtactactgagaaatcttttcctattccta<br>atagatatgtctggagagtgacaattacaatctaaggtgtaaaagaaaaatttaagcaaattcttcctcaaagaaaaaagctcctcacactgtcttccac<br>aatggttgaactagtttacagtcccaccaacagtgtaaaagtgataccatttctcacatacatcatggaatactatgcagccat<font color="green"><u>AAAAAATGATGAGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGCAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGATGAGTTC</u></font>atgtcctttgtagggacatggatgaagctggaaaccatcattctgagcagactatcgcaaggaca<br>aaaaaccaaacaccgcatgttctcactcataggtaggaatttaacaatgagaacacctggacacaggaaggggaacatcacacatgagggcctgttgtgg<br>ggttgggggaatggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacgtgtcacatgtttacatatgta<br>acaaacctgcacgtagtgcacatgtaccctagaacttaaagtataataaatatatatataaacaaataaaaaaataaaataaaataagctcctcaatcac<br>tatgtctaaaaacattatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GPC5:NM:004466:2/8	
0	chr13	98694755	98695060	1000414	0	-	238705; RIP_Alu_chr13_097_01	NA	NA	SINE	Alu	Y	ttgcagtgagctgagatcaggtcaatgcactccagcctgggcgacagagtgagactctatttcaaaaatcaaaacaaacaaaagaagatgggcataaaca<br>ttttgatgagatccaatttaaaaaatgtttcttttatggtctgtgtttttgatgtcatgtcaaagagctctttgcctagccttaagtcctaaacacacct<br>tcacatgccttcttctaaaagtgttttatgtattccattaacattcatgacttttttttttgagacaaggtgtccttatgttgtctagtaggcaggccta<br>gaactcctgaactcaagggatcctcctgcctgagcatccccagtagctggtcaaagccaccatgcctgaccatggcattttaaaatta<font color="green"><u>ATTTTTGAATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAATTT</font><font color="green"><u>ATTTTTGAATCC</u></font>actgtgaggtttgagtcaaacttcactttgtgcctacagatgttcaattttccagcatcatttgtgagatgactatctttcc<br>tctattgaattgatttgcacctttcctagaaattcattaggcctattgcactggtctgtttctaggttctccattctgttccattgatttatattctgtc<br>cctcttctgctgccatgctgtcttttttttttttttttgaaagagagtctcgctctgttgccctggctggagtacagtggctcgccatctcggctcattg<br>caacctccgtcccccgggttcaagcgattctcctgcctgagcctcctgagtagctgggattacaggcacgtgccaccgtgcctggctaatttttgtattt<br>ttagta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	103931653	103931958	1000415	0	+	pAlu13-102768190;12423; RIP_Alu_chr13_102_03	NA	NA	SINE	Alu	Ya5	caaggagggaaatttaggtcatcatctgacagaaatatccttttgcaaagaaagttgttttagtggaaatgagactaagttttccaggttgcctgtctgc<br>actgatgaaattaccttcatcaaaacatgtcttttgggcttatgtcaggcgctcaaagagacttgtttgttgccatggttttgagctgtccccataaggc<br>tggaacagacactttctaggtattggagtaaggtggctctggggttgagaacagtgacaggtgagctaggagcagcattgtcagaactatgcttcctgta<br>cccctgctcttctcccctgttcccttcccaagccacgcttcacctaaacaaagcaggtgtgacgttagatggagagaacattactacatat<font color="green"><u>AGAAAACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAACCT</u></font>aatttcagtaaaccaggatttcaatcctcattctaccacctcccagtgacgtgactttaagaaatgtacttatgattctgaatat<br>cagtttactcaagtatattctccaaagtgggaataacctttgtgaatcactggaagatgtgaataaaatcatgtggtaagtactttgcatgatgttatca<br>tgataagtcctctgttaacattaatttcccttccctttttaggttcatctaagcctttttatcctcaaagaataggtaattaggacatgctatctttgat<br>gcaaacagtttagagccatgtgtaaactaaacaattaaggtgagcagagaccaggtaagcagacacaatgattaggaaacagtaagttttagccatcagc<br>caattg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	21536145	21536457	1000416	0	-	pAlu14-19526174;55315; RIP_Alu_chr14_020_01	NA	NA	SINE	Alu	Yc1	ggggaccctcgagtcaccgacactctccaggttctctattacgagggcccgcgagctaggagagtgagattttgctaccccctggtgtccattccgtaaa<br>tactgcccaggggcgggttacaggggccagtgtttaaaaaaccttattcacctgtctcaaacctagctcatctattctcggtgttgagagtgtctgaacc<br>tttcctcaccaggccttccattccttaaactgcagcaaattgtttagggaacacttggtagggtccaaggttgtccattggactccaaggctcactactc<br>ttaggtagtggaatataaattaatctggctatgggggtccacaaactcctggaaaaagggagtggatcatttttttttttcatggag<font color="green"><u>AAAAAGGGGAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGGGAGCC</u></font>actgaaagtttttgagctggtggggtaagggagtttggatagagaatcagggatgcagttaccccttctttcca<br>ggagttttaaaatctgtgctaaattacaatggtttattttaagtaagtaagtgacatgtggttgcagcagttaaataccactttctccaaagaatgcagg<br>ctcttacctaaaagtgtgtgtgtgtgtgtgtgtgtgtacgtgtgtacacaacagagtatgtgttgatacgtgtgtttttagtgggggaatatgaaagggt<br>aaagttataagggagaaattagaggctgggaatagaccagacttagaagccttctcattcacaaacagttcttaccatatttcacccatttaagactctt<br>tggggcttctcaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	26701619	26701918	1000417	0	+	14794; RIP_Alu_chr14_025_03	NA	NA	SINE	Alu	Ya5	ggggctagtccatcccatctaccatgtgaggacacagagagaaggggctgtctaagaaccaggaatccatcttccaccaaacaccaaatttgccagcacc<br>ttgatcttggaattgccagtctccaggattgtgaaaataaacttttgttgtttataaactacccagtatatgatattttgttagaatagaccaaatggag<br>taagacaccaaataaaataataaatttgttacaaataatttattttcaaattggtttttgtttatgcaggctaaacagtctaaaataagaaccatatggt<br>atttgttagtcctgagttgtttgtttttctttttgcctttacaaatttctaaatcttgttgtaagatcaaatgtatttataaataaatt<font color="green"><u>GAAAGAAAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GAAAGAAAGAA</u></font>aagaaaatagaaaaagtaagcaaccatttatagtatatatgttatatataaaataaaattgttataaaattaaatatactctctatttt<br>ggatttttttcttaatatacgaaaaccattttccttttccatgaaatatttcatcatgtcttttcaatagtttcctagtactatattatctgttaaaaaa<br>tgaaagcttgacttttttgaaaatttctttatcctttgaaactctgagcttttatctataaaatagaatttgtggggagagagaggcaactaaggctgag<br>ctatgatggagtgtctatgaaaaagagtatgttcttgtcagtgtaactaattctactgaggactagaggacagtcacaatgtgaaactatgttttacaac<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	40592445	40592446	1000418	0	+	31370; RIP_Alu_chr14_039_01	NA	NA	SINE	Alu	Y	tgcatatgaaacctcttaaagagccaataagattaaaaatagatcaggattaaatagggtattaagatttctactaccagcataaaagtgtaattcattg<br>tactgtaggcagtgggaaagaggttttatggttaggctttccttttttgatctacacaagtcacactggacttagtgaagttttcacactacatataaag<br>cagctgaatttatatcttcagattctaaggttttctacatcctggataatgtttaccttttagtgtaatatacagccaccccacttaagaaactggtctt<br>attaacctttgaaaatctttaagccttaccctgtgtttaacatattcatgcttcactgagtaatgttctgtgattcattctcatcg<font color="green"><u>AGAAAGAAAGAAAC<br></u></font><font color="red">GGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTC<br>TCAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGAAAGAAAC</u></font>tttaaagctagctcaagttcacatttaccttcttagattatgccatgacagatttcagtgcttctgat<br>gccatctgtttggtaggaaagacatttcctttgagaggcaggtgaaagggcaacaagaaagtcagctagtagataatctttagtttagggcctgtactct<br>agtggtaaaaagtcattctagaatttaatgattactttgctttttctgtgcttcctttcatactgaccgagttgagcatatagctgggctaggcctgacc<br>aaaaaagaaaaaaaaaaaaccactttggcactttgcaagaaagacaagttgtctctgtttaaggctgcttttaccatgggaaacaatcagaataaaagat<br>atatagtagataagaata	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	42486336	42486636	1000419	0	+	20305; RIP_Alu_chr14_041_01	NA	NA	SINE	Alu	Ye2	aaaaatttaggctccacactgaacatcctcagggaaagatgaaagaataaaatgccgtagagattgagatgcacagctggataatgtagagatagatcat<br>ttaagtcaaacatgaggtgaaagctgggaaggcttttgcacctgtgcttgactggatgctgaatttcgaacaagttttctgaagggcagagatttttgtg<br>gaagcatgagttttccactacccaacatagaaaggataaaagaacttgcagttttaggagactagatttacttttttccccaatattatggcctgttctg<br>gaagtaagtgacagaaagacaaagatcgaacttatgcttacatgaacagctcagggccaaggaaaatgtagccaaatttagcacac<font color="green"><u>AAAAAGACCTGATC<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATACTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGACCTGATC</u></font>ttacgcaaatttaagcagaagagaagcaacctgaggaaaaacaacattagttaagcaaaacaaaataaacagtaatattgggtgg<br>ttagagtgaggtccctgacccacattcgcgtcttcatccataggggagagttagccattgggagttgatttgacatgattgtactccccgcgaagacatt<br>ggtaatcagaacactgagcttcaaattagggaagagttaggtgtagctctgcagaatcaggaagtaccactggtgtcggctattctccactgttatacac<br>agaaatagcaagaaccaagacatcccctcttattgttgtaaaaaatgtgaacgtcctctgagtgacagtgccgggaaactggcaaagtctccagaccggt<br>g	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	48826823	48827135	1000420	0	+	Yb8NBC466;Yb8AC818;14503; RIP_Alu_chr14_047_01	TTGAGGCACTAGACTTACAGAATTG	CAGGAGCTGCTTTCACCTCT	SINE	Alu	Yb8	agaagtctgagatcagggttcctgtgtagtcaagttctggtgagggacctgttacaggtttgcagacagccacctttttgctgtgttctcacatggtgga<br>gagtgagctctggtatctctttctcttcctattagggcaagttctgttgagttctattgagtcagggctcaactcttttgacctcatttaaccttactca<br>tcaccttaaagaccctatctccaacacagtcaaatggagcatgacagcttcaacacacgaaatttagggagacacaattcaatctataagcactgtttcc<br>ccataatcatgtacatatgaatcttccctgtaccatcaggagctgctttcacctctcccttaattagattcctagattattaaaaat<font color="green"><u>AAAGTACACACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGTACACACCT</u></font>tttcaattctgtaagtctagtgcctcaaaaataacaaatgtttgtttaaccaaaaatttctggttggatgtaca<br>aaaatcatctcagctatcctgtaagaagagaaagttaactgcatgtgaaattaattgtaactgaagaaattgccaatatagaccatagagcaggccatgg<br>tctacaagagacatggtagttgaaagacctccagtaatctacgtatttcattaaaatatacttatgcccactggcctcaaacatctctgctatttctaaa<br>aatctcttcaatttgtcagaataaccaatgacaaaataatggagaactctgccataaaagagcaagagaaaaagtcacatagtccaaaatgaataacctt<br>ttaatttacctta	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	427	92	NA	intergenic
0	chr14	49958457	49958594	1000421	0	-	12195; RIP_Alu_chr14_049_01	NA	NA	SINE	Alu	Ya8	ccaaagagcctcttgttttcctggcccctccttaacaatttacccgatatcaatctactgctgataataaatgaaaaaggtaatgaaaaaggggagtttt<br>ttttttttaaacaaatgtcaaaaaaaccctttaagtatttctgacattaaaaaaaatgttgttggtccttccttatttgcatggagctttatgtggttca<br>gaaagcccatctgtaatccatttgagtggaagtcccatttgtcactgctgtcaggatggtaaaacacatttgaaacctttttgctttaaagaaaatagaa<br>ggcttttctgcactttacattgagctgaagactttgccactctcagggaaatgtcaattctgagaaagacttgtgcaaaatgagagt<font color="green"><u>AAAATAATTAGTC<br></u></font><font color="red">TAGTCCTTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATAATTAGTC</u></font>ttgaaaagtgattttactttttgcttaaacacgttccattttccccaaa<br>gtccccaggttcctaaaacaacaagaagtcatgagagggtgagggttggggttgtcgtcgcaagcagtcttgacttcatttatccactcaatggagggat<br>cagcagcatgaacattacaaaatggcagagaatccacacagcacctccatttagcattggggtgtgttttatagccgcttttagaataaacattttgggc<br>caggcgtggtggcctgtaatccctgggatcacacctgtaatcccagcactgtgggaggccaaattgtgcagatcacctgagctcaggaatttgagaccag<br>cttggccaacatggtgaaaccccatctctactaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	68377013	68377156	1000422	0	+	7444; RIP_Alu_chr14_067_01	NA	NA	SINE	Alu	Y?	tcctcccatcttggccttccaaagtgttgggattacaggcatgagccaccacatgtggccaaaaaatactttttataaatacctcagttgcataatgttt<br>tctccattatcaacttgacaggcctttgtttaaggtttacggttataagtacttatttgtgtaaaatttaagatctatcaatatgtctaatttttcagaa<br>atttttttcttcaacattttagcctttggcccattttcaaattgtatgtaggccaaggcatacacagtggacattgtgcagctgcgtatacgaatatagc<br>caacattaagaggtcccttgcaataatgctgtttcagaaaggatgtttactgttcttttgaacatagttttcttgtttctgctttaacttat<font color="green"><u>AAATATTT<br></u></font><font color="red">CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG<br>ACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATATTT</u></font>aaataaaaataatgtttcactgaagaaattgtaaaagtgaactatatg<br>ttaaaaataatctaggaaactaaattactgctattccactttgcagtttgatattgctcattttttgactcgtaaagtcagtgtcgatgccttttaactt<br>tttttttaaaattttactggatttgtattttaccatatttgtgcagtgactttgattaggtaccaattgaattcagattaaaaagcataaacctacatct<br>gaagatagcctagtataatttatattgtgcatcgttctgattttgaaataataattctcctttacaacgttagggctgaataaaagatagaatccttatg<br>aaatagtgagcccaatgtcattttttttttttttgagtcagagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:RAD51L1:NM:133509:7/11	
0	chr14	71437837	71438160	1000423	0	-	pAlu14-69427783;Yb8NBC9;239173; RIP_Alu_chr14_070_01	GTCCCCACCAATCCCTATCT	TGCTCAAAGTCCCACAGCTA	SINE	Alu	Yb8	tcaaacctgacaggcatgctcttgctttagggctttgcccttgctgttccctctgcgtggagggggcccctcccctcagatatcctgagagctcactcct<br>ccttcttcaggtctttgctctcagagaagcccgccctcaactactctatttaaaattaaaatttccctagtccccaccaatccctatcttctgtctctac<br>ttactacagtatatgttgatcgctaccagtatgattccatattaatagtagagaagccacatgagggtggaactttttgtctttttgttcactgatttat<br>ttccagtacttaaaacagtgccaagagtactcgacaatatttgttaaatgttaaacatatggaaaaatgttgcatgataaaagcaagtttt<font color="green"><u>AAAACTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGTCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTATA</u></font>taaagtagtatagcatagattttaaaaagcataattcaaaactagatttgaattataggactgtcac<br>tttgtagctgtgggactttgagcaagtttcttataatttctctctaagcaataacatgcttatctgtaaagtgagaataataacagtgccaacttcaaac<br>gtttatagtgaagattaactgggtaaatgcatataaaatgcttagaagaggacttaaaccaggggttgacaaactaagtcccatgaagccaaatccagcc<br>ctcaaacttgtttttataaaccaaattttaggatggcacagccatgcccactatttatgtatcgtttatgactcctttcactctacaatggcagagttga<br>gtagctgagtagcaagagagacca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	655	322	NA	intron:PCNX:NM:014982:5/36
0	chr14	79653938	79654025	1000424	0	+	2570; RIP_Alu_chr14_078_02	NA	NA	SINE	Alu	Y	tgtaccatgagcggagtcagagcccctcttgaaagcaggttggtaaatttccagaaccacttagcagttttcataggtggcaaggcattgtattgttatt<br>tttattattgttaggagctaacatttgtttccaggaactgggctaaatggttcaaattcattatctcatttaatctttacaatatttctgtgaggtagaa<br>agtattgttatctccattttagagatagcagttatagaagaggcatctggagctaaaacagattaaatgaccttttccctcaggttcagagtaagtgtca<br>tattgcaccccagaataattctgtgctcaccataatgatttacccttctaaaaggtaatataatgcaatttcagaaattaatga<font color="green"><u>AAAAATGTGTAAGCAT<br></u></font><font color="red">AGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGTGTAA<br>GCAT</u></font>aagaaaaaatagcgaatgtccttttctagcatcacactagattttacgggtgattacaggaagacccttttgagattttcagcaatggacttttct<br>tggatgagacggaagatgctctcagctggtgtgactaaattgtttgcgacttgaggacatgggtcatgccctctgtgtgtaccactcactatatcctcat<br>cacagttcctgcataaagcagagattcagaagggtcagtcgagaacatggatgacaacccaacactgtaacccagcagcttgtgtcttggtgtaacattg<br>gtaggttttgtttgcctttacatttttaccataagaggtcaactagagtttctatcttgttacaagttcattacacaggtatccctta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:NRXN3:NM:004796:12/17	
0	chr15	39520114	39520442	1000425	0	+	14146;pAlu15-37099151; RIP_Alu_chr15_037_02	NA	NA	SINE	Alu	Yb8	ataagagttttaagaatactgtgccagatagtaggggcagagaccaaatatatatttcttattatatcacaatatcacagatactaattatatgtagaaa<br>acttcatattaactccagaagttagaaacgtaacaacagtaagatctcaagaaaaatgaaagagacaataaagacaaaaccagaaattaaggaatgagaa<br>aataggaacaaggagagtggaaaaataaattcaggacatgaataataaatacgagtttgctcaagaaaaaaatcaaataattacacaaaagtaaaattgt<br>gaaagacagcataatcaaagacacagaggatatataaggaattactctactcacataaattgaagatacgggtgaaataatttttaaaa<font color="green"><u>TTTAATTTATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TTTAATTTATC</u></font>aagaaagactatagaagatgtagaaaacctgaatataccacaattctccgttgataaatt<br>tcaggaagagaacagtggagaaggtggtaagaaaaatataattataagctattagttaatcagacaaaagaaaggcaattagaaactctaggaggaagaa<br>aaaaagaagctgcacttcaaggttacacaagtaaaatgaacaaaaagagaatttttaaaagttgaggcttgtaacattctcatttgtgtggcataggttt<br>acaacatggtattacattcccaaatctgcaggtttaattagctcattttgaacaatagtttgaaattaaaacattacaacttctatttattggctttcaa<br>ttttcaagatccatgtaagggaaagcaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	42017749	42018067	1000426	0	+	2365;pAlu15-39596787; RIP_Alu_chr15_039_01	NA	NA	SINE	Alu	Ya5	tatgggaatgggcagtttacttaaagaataaaaccagtagtgctgggcgtagtagctcatgcctgtaatcccagtgactcaggaggctgaggccgcagga<br>ttgcatgaggccaggagttcaaaacaggcctgggtaacatagtgagacctggtctctaaaaagaaaattttttttctttatattacctttaattaactct<br>taacaactaaacctttttttaaagacctaaaatttatttttaaagacctatgcaggcatggtggcatgtacctgtagacctagctacttgggagcctgag<br>gcaggaagatcactttagccaggaggctacagtgagccatgattgtgccactacttgggcaacagagtgagacttgtactcttaaaa<font color="green"><u>AAATAAATAAGTA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAATAAATAAATAAAT</font><font color="green"><u>AAATAAATAAGTA</u></font>aacccaggagcctcttaacctagatcttctttttaatttagttaagtaatcaatgcatattttccttt<br>gtgcacattttttgggggattatttattaacaagtaaaaatgcatatattggtctataacatgacattttgatgtaaattgtagaatggcatacagaact<br>tcttgatagtatgattttacctcagttgggtttcattgcgtctatattgatataagtgtttttactcctgtactgagttcaggctgtcttttgattacaa<br>tttgttattagaatgcagtagtgacagcttggtctctggagccagatagacagggtttgattctggttctgcctcttactggttggacatccctgcctct<br>cactggttggacatccctg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MGA:NM:001080541:9/23	
0	chr15	43660442	43660753	1000427	0	+	Ya5NBC241;238740; RIP_Alu_chr15_041_01	GGTTCCAATAGAGAGCAACAGAA	ACCTTAAGCTTTCCCCCAGA	SINE	Alu	Ya5	gctattgtcttggatgataagatcagaattcaaaacaacctcaacaaattttaagtgaaatggtaacagaaaaaagcatacaacatggagatcaatagac<br>tacaaagaagaaaaacaagttctacaaaaatcaagtacaagaataatcaactaggtataaaggcattggggaaagctatcagagtcctggaagttaccag<br>gtgaacaaaaaaatataacaggttgggctatactgatacaagacattgcaagattctgaagtaaaattcttacttagcttctaacagactttcaggaaaa<br>taataaacataatttagttccccacaattaacatgatatttggagaacttaaaggttccaatagagagcaacagaaacttaggttt<font color="green"><u>AAAGAATGGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAGAATGGATCTT</u></font>ctgggggaaagcttaaggtaacaaatatagtttaatttgaagatggaaaacaaccaaaaggaagatgtgccttc<br>aagtatagaaaagaatttttatctagaaaataatgacctatactatcatcattaccaagaggaaataaaataattccaagttccgataaaaactagggag<br>ccattctcttgtggacttatcaagaggtaatatgaataccagaggctaaactacatgtcaacaaccacatattctgcaatttccacttactcctgaaatc<br>cctttcccactcactattcccaaccctacttcccaacttggaatggcagtctatcttcccatatgaatctactcctcaccgctcctttgaaaaggtttga<br>gcttctcctttg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	392	66	NA	intron:ZSCAN29:NM:152455:2/5
0	chr15	46067981	46068315	1000428	0	-	pAlu15-43647033;238357; RIP_Alu_chr15_043_01	NA	NA	SINE	Alu	Yb8	tcagattttcacagcaagcttgaaagcattttgaaggttatagtgcatccttaataagtagggagggacattctagaaatatgaaaaaaagacatgcttt<br>aaaaacaaggactgagcttccagtaatggccaaataaagattctaccagaataaacacccttacagacagctactgtaaaatatggacacattataagaa<br>gcagctacatggaggcacaagagggtgatggaaggcaggtagagtctagggaggagtccatgcaccagggaagacattacatggagtaggtactccatgc<br>tgctgcttctagcctgggggtaggttcagttagcttgcatggaacagcaggtacagtgaaaaataaacacattttttctggcctt<font color="green"><u>AGAAATCTGAGTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATCTGAGTACT</u></font>gagtccagggcaaccgcagtcactgaagaaaagggaaatttgggaggaaa<br>aacagccaggagggggatacccaaattctgcctgcccacatctctggctggctcctgaatcacacatgcatggagcagactcaaagcacctcagctagag<br>gtaaagaacctaaagagagtttggaactggttaaaaaccaaaaatagtttggagctcatatttaaccaggttaattgtgtgctaaaaggaaagaaacatg<br>actcatcaaaagaaattaacaaaatccagtatctacaacatgaaatttattgtgtacattacacaatcagaaagtactcaaaatataacaaatcaggaaa<br>agtgggagccctaacatgacagtcccagaggagct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	51897717	51898040	1000429	0	-	238258; RIP_Alu_chr15_049_01	NA	NA	SINE	Alu	Yb9	aagaacaaaactcccatctcacatccacacccccacacacacacatacaaaatctctataagtgtgttggtttaattctaggtctctaatgttatgtgga<br>ttaatcttcaagatttcagtttaaagtgttgggtagtttattggagtcccatcttttgtcagatggagcactttcatttttgttcctctagatccaagag<br>accatcaaaatgcagctcagttttaccctcactcttttagattagcaaatgctgttaggacaaattggcattcagtgctgagcacagccttatgttctcc<br>ttttctcttagattttggcccactaattcctcacagtattttttatttttttagctctttgagtgtttttacatctatgttcatt<font color="green"><u>AAGAATATTAATCTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATTAATCTG</u></font>tatgggctgggccgggtagctcacacctataatcccagcagtttggaaggccaaagcaggc<br>agatcacttgaagtcaggagttcgagaccagcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcacacgc<br>ctgtagtcccagccacttgggaggttgaggcactagaatcacttgaacccaagaggtagaggtggcagtgagctgagatgatgctactgcactctagcct<br>gagtgacagagtgagacgctgtttaaaaaaaatacatatatttatatgtttttttcccccgttgtactgtttttgtcgagttttggtatcatgctaagat<br>gttttttgtatatttcatgaagct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DMXL2:NM:015263:1/43	
0	chr15	64633194	64633503	1000430	0	-	10196; RIP_Alu_chr15_062_01	NA	NA	SINE	Alu	Yb8	ccaggagttcaagatcagcttgggcaacatagcaagactctgtctctataaaaaataaaaaaaaattagctgggtgtcatggcacgagctggtagtctca<br>gctactcaagagattgaggcaagaggattgcttgagcccaggagtttgaggctgcagtgagatctgatcatgccactacactccagcctgagtgacaggg<br>caagatgtctttgaaaccaaccaaccaaccaacagaagaaataaatgacagtttaataaatatttcaggccgggcactgtggctcacgcctgtattccca<br>gcactttgggaggccaaggcgggtggatcatgaggtcaggagattgagaccatcctggccaatgtagtgaaaccccggctctact<font color="green"><u>AAAAAGATAAAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATTGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAGATAAAAATT</u></font>agctggacgtggtggtgtttttgagacagtgcctcactctattgcccaggttggagtgccgtggtgtgatcatgg<br>ctcactgcagtaccaactacccaggctttaagtgatcctcccacctcagcctcctaagtagctgagaccacaggcacacaccaccatgcctggctaattt<br>ttaaaaaactatctgtagagacaggattttgccatattgcccagtctggtcttgagctcctgggctcaagtgatcctctggcctcggccccccaaagtgc<br>tgggattacaggcatgagccaacatacatgaccttaaagtggtttcacagaagttctacctagcaacttcattagccctttgctgcaaggtaattaggct<br>gcccagaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CSNK1G1:NM:022048:1/12	
0	chr15	81392587	81392588	1000431	0	+	280; RIP_Alu_chr15_079_01	CACCTTCTCTGCCTGTCTGCATC	GACACTCTAAGGTATCTGTAAGGTC	SINE	Alu	Ya5	tagacctaaaggtaggtaaatcttcctctcctactatcttcctcctcacgtatatttccaaaggttttttttccctatatttatacaagtaattagcttc<br>cgtccatttgtttcatcacctataaaataggaatgatctttgcctcatagatgcatgagtattaaagtacataagataatacatgtacggcatttaaagc<br>agtttgcaaacactcaataagtgttataagaggagaaaatttccacttaaaacttcttccaccttctctgcctgtctgcatcccaggtttttggtatagt<br>ctgggacttttgacaaagtttaatgctcgttaccatactgatgtattttttttctccaagaattatttaacatctgcattattttgaa<font color="green"><u>GAAATAAGTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GAAATAAGTATT</u></font>tcttagttctaagtttaaattatttcagtgctgattatctgtcctactgtaatacagtcttctattatagagttctttattttga<br>cgtacagatcaactgcatagtatttttatggaaaggtacggcagaggcatattgagaccttacagataccttagagtgtctttctattgctttaaataat<br>gaacaatggatgacttcttggggtttgaaatcttgctttgcaaactttccccctcagaattttatgtagctgctggagtacactgaggctagctccattt<br>ttcttccattgcctacaattttctacatgcctagataataataggcatcttcctttatccttgaaataaaaaaattatctactttttatctcttaagaat<br>tct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr15	101453082	101453376	1000432	0	+	5167; RIP_Alu_chr15_099_01	NA	NA	SINE	Alu	Yc2	ctagtttgtcatttgggagtttttaatggagtctctgctctacaaaaatagaatttagcattctgtttatggcttttatgttttgtgttttatttaggaa<br>agattataaaataattcacttattttcatgggttctggaactatttgttttaggaaatgacctaaaaatctcaatggcacctaccattcattttctgcct<br>aacacatagtaggggctctacatgattatctgtaattgttataattacaaggaggtgatggttttcctatttgatagttgatgaagttgaggctcaggga<br>aggcaaagaacttacctaagcaacatagttctaagccagtggttctccaacttgagtatgcatcagaatcacttggaggacttgtt<font color="green"><u>AAAATACAGATGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGCAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAT<br>ACAGATGTC</u></font>tgggccccaccatagagtttctgattcagtaagtttattagtcttttattgctcctgcaagaagttaccataacatcagtggcttaaataa<br>cataaatctattatcttatagttctgtaggataaaaatctgacacaggtctccctgagctaaaatcaagggcttcattcctttttggaggttctcaggag<br>agaatctacttccttgccttttccatcctctagaggctgctcgcattcctaggctggtggccccatcctccatcttcaaagccagcactgctgctctctg<br>aacctgtttctataatctcattttgctctgcctctcttcttctgccagttttggggacccttgtgattacactgggtctgcctggatgatccagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ALDH1A3:NM:000693:12/13	
0	chr16	20778558	20778861	1000433	0	+	20638; RIP_Alu_chr16_020_01	NA	NA	SINE	Alu	Y	aaaaatgtttttagtgggcagaatagtgtgtattctgtgctacctgttgtgtaaaattggtggagaaataagaatctatactcataatttgcttgaatgc<br>acataaagaaaccctgaaaagataagtagaaataataatagtggtttcctgggagtgagagcaaagtgggcagctttgagactagaggtgggaggcagat<br>atttttttttccctctgtaccttttacagtttttttgagccatttgaagatattatgcgaaaaaaaattaaaaacagagagagacaagtagtgttgatta<br>cttaacttctttcagttgaaggaaacctgatgctaattctgttaagaggagagcagccaaaagcataggttgtgacttgccagc<font color="green"><u>AAAAAACAGGGACCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAACAGGGACCGG</u></font>tagttccctctgtacccaatccccaatgccaaacagaatgacattgttagacttaaggtcttaacctgcagggcaactgg<br>gattcagagtgattttagttctgttcttaagagcagccttttctcctaaagcctgccaagaaatttttgttaattcttcccaggaacataacagacaagg<br>cccctgctctggtagaacttacatcacagtgcaaagatcagcaaactgtagcccatgggtcaaatccagccctctgcctgtttttgtatagcctttgaac<br>caagaatggtttttaaattttttaatggttgaaaaaataactaaaagaggaacactaattcatgacacatgaaaattaaatgaaattctagtgtcagtac<br>cata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ACSM3:NM:005622:1/14	
0	chr16	23528554	23528849	1000434	0	-	31594; RIP_Alu_chr16_023_01	NA	NA	SINE	Alu	Ya5	aaaataaataagtaaataaataaataaataggccaggcgcggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggcagatcacgaggtt<br>aggaaatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaaacacaaaaaattagctaggtgtggtggcatgcacctcaggggttctga<br>gggatgagtaggagtttcccaggtagatgggtgttggaaggctattccaaggagagggatgaaaaataaagcttcacaaagttgttcaggactggaccaa<br>gagtaggagtcaggggagaggtagaagtggctgctgagaaaccaggcagatgtgagatccaaataataaaacccagattcaat<font color="green"><u>AGAAAAAAATTAGCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>AAAAATTAGCTGG</u></font>gcatggtggcatgtgcctatagtcccacctactagggaggctgaggcaggaggatcacttgagcccaggaagtcaaggctgcagtga<br>gctgtgattgcaccactgcactccagcctaggcaagagagcaataaatcttaaataagatttattatcgtacttagcaggaagttcattggtaaggtggg<br>ctgcagggttggttaattacacgtgtggtgacatcagtgaggacccagggtccttctctctctccaccctcctggccacagcatctgcagcagccacagt<br>tggctgcctgcagcagtcaggcctctgcacttcctccttcatgtcagctggggagagggtggctttctatggctgtctcccaacagcaaggaaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr16	49036089	49036207	1000435	0	+	pAlu16-48773173;15362; RIP_Alu_chr16_047_01	NA	NA	SINE	Alu	Ya5/8	agtgcctgccctcatggagctcccagtctaggccagtaatgttcaatagaatgttctgtggtgatagaaatacttatctgtgatgtccaatatggtagcc<br>attagccacatgtggctactgaacacttgaattgtggtagtgacaggaagtgtattttcattttaaatagtcacacatgactaatggttactctattgga<br>tggtagaggtctagaggagaaacatgaaaatgtttagcacagagcctggcatacagtcagtattcaataagtgcatctttcctttccctccctccactat<br>gtggcacctggtaccatgtttgttaactcctctgctgctgttacatgttcttaaggatgagtaaggtcatctcaaacagactct<font color="green"><u>AGAAAGATAGGCCTCA<br></u></font><font color="red">CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGATAGGCCTCA</u></font>gtgtggattatttatatgtgtcttccaggattttgcacacagtaagtgctctttaaatgcctatt<br>aaagagacaatatggtgtaagaaagggaacatgctttggcactaagaagaaataaatttatatcttggctccatcactcagccgctgcacaacctgaaca<br>agttactcaagctgtctgggtctcagctttctctctgttcaatggggtgatgatgggctactctgtgggggtagttgtgaaaacagatgaactcatgcat<br>gaaaagaacccagcatggatccttacacaaagctgctctccaaacaggagaaagccaaccagaagacaaatgatgatgcttctttggatgttcccagctt<br>cacagatgtgggccctgta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	62046877	62047194	1000436	0	+	Yb8NBC499;238240; RIP_Alu_chr16_060_01	GGGGAAATCTCCACATCAAA	ACCCCCACAAATGCATACAC	SINE	Alu	Yb9	gttaagataattgaaaaatatattattttttctcattttattaagttttacattttaataaaagcatattaagaaaataaaatgcagaaaattatttttt<br>aaaactcataatccaaccacatatattggcggaaaaaagattgaatatattgatatatttccttacaggttctcctgtattgctttgcggtatagttact<br>aatctgaatcaatgtcagaaattaactcctcaattttttttaaggtgggttacctggatatcacatactcattagatataatcatgcatttgggattttt<br>ttatgattctgtgttgttttcaactggggaaatctccacatcaaaacagtgaatagtggttatagacgtgatttgcattctcttt<font color="green"><u>AAATTAACTACTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATTAACTACTTAA</u></font>atcaagagcattggcaatgtgtatgcatttgtgggggtgaaggtaattgaaaaaatagcggtagaat<br>gactgaaagtattgaatatgggtgtatgggtgagcaggataatgggcactaatggctcattatttttgtaaatttgaatacatacatctatattcatggt<br>ttgaagatagatacaaaaatgtttaaatgtattttttcatgttcacacacatattttaacagatatatgccaggcactctgactgtatcacacatatatt<br>ttaataattattttctatacacattttatatcttgcctttgatatttattaagttgcaaccacactcttatgttataaatcttaattttttaatgacttt<br>atgctattctgtcacgtg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	446	113	NA	intron:CDH8:NM:001796:2/12
0	chr16	65482189	65482190	1000437	0	+	9449; RIP_Alu_chr16_064_01	NA	NA	SINE	Alu	Yc1	ggataacccaagtcctcaaggctctctcttctctaggaaattaggaaggacatacacatgcatgtagtaaaggcagagcatcccagcatagagtccagag<br>gagctccgaggagaatggaagcttgtaggggcataggggagctgcttcatattttcaagactctcactgcaatagggaacttaggtaaccaggcttgttc<br>tcccacaccaaagagaagactggaaactcatggaagtggtgacattcccctaaggcacacattccaggctgagcatttaaatcagttgatacttcttctg<br>tatcttatttaagactttagtacatgagctcttaggagaccaaaagttattttcagtatcagaaactggtgagtttctaacaa<font color="green"><u>AAAAAAATTGTTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAAATTGTTTTCTG</u></font>aaaatagggcttacttctggaaggcaggataatgcacagaacacaccacccctttctccaagatgcccaccatcttaattcaaaa<br>aactgaatttgtcaccttgcatggaaaaaggaactttgcatatgcaattaagggccttgacatgaataaattatcctgttggacccaatctggttacatg<br>ggttcttaaaagtggaagatgtttcctggttgtggtcagaaggaaatgtgaccatggaagaagggtcagagggatgcaatgttgctgactttgaagatcg<br>gaaaaaaaatgaactgtgagccaaaaaatgttagcagcccctagaaacaggaaaaaacaaggacatagattctccccaaatgcctccagaaggaatgc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LOC283867:NR:027755:2/9	
0	chr16	66823206	66823527	1000438	0	+	Yc1NBC35;5511; RIP_Alu_chr16_065_01	CCCATTCTCCATGCCGTGAT	TGCAAGGCATTGGGGATACA	SINE	Alu	Yc1	caaacatcatgttctcacttatttgtgggatctagaaatcaaaacaattgaactcatggagatagatgattaccagaggctgggaagggtagtggaaagt<br>ggtgggtatggtaccaaaaaaaaaaaaaaaaaaaaagaaagaatgactaagacttactatttgatagcataacaaaataaccataatcaataataattta<br>attgtacactttaaaataactaaagagtataattggattgtttgtgtaacataatgaataaatccttcagtggatggaaaccccattctccatgccgtga<br>ttatgcactgcatgtctgtatcaaaacatctcatgtaccctataaatatatacacctattatatagccacaaaaattaaaaataaatt<font color="green"><u>AAAAAAAAATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAATTC</u></font>agggactatatcttacttatccctgtatccccaatgccttgcacaaagattggttcctaaaaggtg<br>attttttttttttttttttgagacagggtcttactctgtggtctgtcacccaggttagagtgcagtggcataatctcggcccactgccacctccacctcc<br>caggctcaagcaatctcccacctcggcctcccaagtagctgggaccacaggtgcacactaccatgcctggctgattatttgtatttttggtagagatggg<br>gtatcaccatgttgtccaggctggtctcaaactcctgaggtcaagtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccac<br>gcctggctgatgaagaaatatt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	481	162	NA	intron:CCDC79:NM:001136505:5/19
0	chr16	67253677	67253981	1000439	0	-	18088; RIP_Alu_chr16_065_02	NA	NA	SINE	Alu	Sp	caggagagcatttaaaggattgaatgaggccgggcgtggtggctcacgcctatagtcccagctactcaggagtctgagacaggagaatcacttgaaccag<br>agaggtggaggttgcagtgattcgagatctagccgctgtactccagcctgggcgacaaagcgagactcagtctcaaaaaaaaatacataaataaaggatt<br>gaatggatgattaacaatgtcagatcccacaaaaagcccagcaaaatgaagaacaaatattgtccatgagatatgttatccaaggaggccaccaatggct<br>tcagtgatatttggcatctggaaaaataagccaggtggattgaggagtgaatgagagaagtaggaagtgtagagcgtgacctcgctggc<font color="green"><u>AAGAAATTTCT<br></u></font><font color="red">TGGCCGGGCGTAGTGGCTCACACCTGTAATCCCAGCGCTTTGGGAGGCCGAGGTGGGCGGATCATCTAAGGTTGGGAGTTTGAGACCAGCCTGACCAGCA<br>TGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAACTACTCGGGAGGCTGAGGCAGGAGAATCGC<br>TAGAACCCAGGAGGCGGAGGTTGCAGTGAGCCCAGATCGTGCCATTGCACTCCAGCCTGGGCTGGAGCAAAACTCCATCTCAAAAAAAAAAAAAAACAAA<br>AAAAA</font><font color="green"><u>AAGAAATTTCT</u></font>ctacagaaagaaggaaataaatagggcaagtcaggcacagtggctcatgcctgtaatcctagaactttgggaggccgagacgag<br>tggatcacctgaggtcaggagtttgagaccagcctggccaacacggcgaaaccccctctactaaaatacaaaaattagccaggcatggtggtgggttcct<br>ataatcccagctactctggaggctgaggcaggagaatcacttgaacccaggggtggaggttgcagtgaaccgagattgctctacttcactccagcctggg<br>caacagagagagactccgtctcaaaaaaaaaaaaaaaagagagagagagagagaaagaaatagggcagaaatgagaagttgagatgggtttgacaaagac<br>aaagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LRRC29:NM:012163:2/7	
0	chr16	71164378	71164690	1000440	0	-	13768; RIP_Alu_chr16_069_01	NA	NA	SINE	Alu	Yb8	gcaccctgaacacatatgttatttaaaaagagttatttgacaatactgacaggagttggaactgggacaggaattcagtgatcctaggctcccactcagc<br>acttatgttgctaaataatttgtctctcacccctggtaataccagtacaatgatgggaatatggtcgtatgtcctgggaggagataaaattcagtctgca<br>aagttcaggagaaatgtgaacatagctctggtgggggcaatgagtggattggggaaagctgctgttctctcttatcacgatggatattaaaagctagaaa<br>aagagagaaaaggaggtgccttaaggcatagcttgagcattttgtaagctgacagcttggcgattgcctatggttgacagggggag<font color="green"><u>AAAACCGGTATATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAACCGGTATATA</u></font>tggagttgccagctttgtcccaggaactgcactagagccttgattacatttaaccctcaacacatctttctga<br>tggagcagctcctgtggtctctagaaggagaaggcactgaggcttagaggaatcagggaactgccaaagtcacagagctagtaaacagatcacagaatta<br>gtatgcaaacctagtccctgccggccccaggttctatgctccaggtaactaacagctaagaaagaattaaagctaagcaaatttaaaaggaacaaaattg<br>tccttgccatgtgaggggcagaatagatgttaaatatttaaaaagcagcctggaaaacaggattacctgaaagaaaatatttgtccagatatacataagg<br>gctcaggagtaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:HYDIN:NM:017558:8/20	
0	chr16	86814227	86814228	1000441	0	+	12621; RIP_Alu_chr16_085_01	NA	NA	SINE	Alu	Yg6	cgttactatcccatttcacagatgagaaaactaaggcccagggaggtaaataacttgctcagggtcttcaagtaggaagcagcagagccgagattccagc<br>cccaagctggcactcttcagcactgcacagtccgccctctctgcactctggccagcgtcagcatcacctccagggacagtgcatgcaccaggaaggacac<br>agctttggaaccatctgcgtgaaaatgcgaatgtttaggtttgcattgcaaaccccactgcaaatcagctgtgactttggacaaagcccatcatttctct<br>aaagccccaacttctacggattgcatccgccttcccttcttcccgacccccacccccagtaattcctgctccaccttcaaaccccc<font color="green"><u>GAAAGGGAGTTTGA<br></u></font><font color="red">GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG<br>GTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCNNAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGGGAGTTTGA</u></font>aaaggctgggctcacgtctgtaat<br>cccagcactttcagaggccaaggagggtggatcacttgaggtcaggagttcaagaccagcctagccaatatggggacaccccatctctactaaaaataca<br>aaaattagctgtatatggtgacgtgtgcctgtaattccagttactctggaggctgaggcaagagaatttcttgaacccgggaagcggaggttgcagtgag<br>ctgagattgctccattgcactccagcctaggcatcacagtgagactccgtctctaaacaaataaataaatacaaacaactccctttcaagattagctctc<br>tgcatttctggtcatcagttattcctactctaataggtgttctggttatctcttggtgtata	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	13704561	13704849	1000442	0	-	79694; RIP_Alu_chr17_013_02	CTGCTCTCAACCATTTTTATCCTCTAC	CATGAACTTGAGTGTTGATTCAGGC	SINE	Alu	Y	agagctgacttgaacccaaattttctggtgtacattatgaactgaattctgattcagttcaacatgcattgaccccactgtatactaagctctagaaata<br>aaatatgagtaagtttcagatctttaaatgcagcctatgagaaaaaacaggtactttctataataaattgaaccatatgaccaattgctgtttttgtggg<br>ccaaaaatgtcgaatattggttatttcatttgatttaatcaaataatatgtaagtactatgatagcggtatattgataagttactttgttgttttcctta<br>tatctggaatttctgctgctctcaaccatttttatcctctactttctgaagcagttggccttgacagaggtggctaaatgtcta<font color="green"><u>AAGAATACATATATGC<br></u></font><font color="red">AAGAATACATATATGCTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATACATA<br>TATGC</u></font>acgctggatgactgacgaccctagcaatccacacagacttctttcttgcctgaatcaacactcaagttcatgtctaatacagcatttcttcttgg<br>cctgtaaatacagggaatcaatggctaatgagcaacttcatacaggatctctgaggttgtacataataagttggactaccccagacctaaggtacatggt<br>atttcgagacgtcaaggactgcagagttctgatggcttaaagagttaggaaaaaccactgatttgccagccaagaggtcatctgtgacctcaagatctgc<br>agcaatggtgtaagactgataactggcagcaaaataaaacagcagtacatgaaaaagggtggctgtgtaccaagcattgtgtcaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr17	30436752	30437055	1000443	0	+	9918; RIP_Alu_chr17_027_01	NA	NA	SINE	Alu	Ye5	aaaatacaaaaattagctgggcatggtggtgcatgcctgtagtcccagttacttgggaagctgagatgggtggattgcttgagcccacgagattgagaat<br>gtagtgatccgtgatcatgccactgcataccagcagcatgggcaacagagttagatcctgtctcaaaaaaaaaaaaagttacactgcagaaattagaaaa<br>cacaacaataaaataaaaaacaaaacaactagccggttgttatagatatttgggtttagtaatgaatttcctgtgacagatagcatcatacgtagaatcc<br>aaacgtgctatcatctcaaactttgatgtaagtgaaggacctatggtaaactgaaagatacataacaatttgaaaaaatgttttat<font color="green"><u>AAAATGCGAGGGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATGCGAGGGAA</u></font>aagtagtttgaaacaaataatttggtttatatgtgatttttagatagttatgtataactatgttaataatattgtatatagt<br>atatctattcatctgtatcttcaatgtttatatactgaagttggtaaaaactttttttacaacaaaattagtcacttttatttaaaagaaacattacaaa<br>taagtgtgcaaaattaaacatcatgattaaatacacataaaaggaacatgcatactttacatcaaaatccacatacagagttagttgattacatgacagt<br>aacagtaaaggaactgaaggaactggcaaaaccgagaactcgctgctatgcagattttatatgtttgcaatctgaaatcaaaaccataaaatagggtttc<br>ttta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	46617222	46617223	1000444	0	+	12784; RIP_Alu_chr17_043_01	NA	NA	SINE	Alu	Sq	acagaccactcacaattggtcctgacccaagaggaaccctgccccaatcaggatggaataagtgagtgcggccacttggagctgccctctaatctgccac<br>caccactggggtctgctgccctatctgggaaccaccccctcttccccttactcctccatggccaactgggaaaactcaagctaaaaaggatgacccaaga<br>gatgaaagaaggaaaagaagttaattcggaacacagggatcctgaattgcaatcctttatgaatcccaaattgccaggcattcccttgaatctgaattgg<br>gtagggaaattgaagatgggagtcacttccttctgcaaattcattgcctctttgtgctgccgtggtatcatcagagacggtgagtttcataaatttggaa<br><font color="green"><u></u></font><font color="red">CGGATCACTTGAGGTCAGGAGTTCGAGGCCAGCCTGGCCAACATGGTGAAACCTCATCTTTACTAAAAATATAAAAATTAGCCAGGCGTGGTGGCAGGTA<br>CCTGAGGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACTTGAACCCAGAAGGTGGAGGTTG</font><font color="green"><u></u></font>agaagacagccagcaacgcttttgtgtttcctgt<br>aaaaagagtttcaactcctctccaataatcagccaaagacaacacctggactaagacctctcacccctaggatatccaaagtacctgaatctaaacaggt<br>acattgagcctttggttggctcaccactactttggcaggaaggaatcaggactgatgcaggcccaggcaggaacaaagattccctgccatttgagctact<br>ggtttgggttgggagaattggaaggcaggggccaggtaaagtgagtcaaaaattctgaagcatggaggaaggcagaaagcaaggtggcactgtgatctag<br>cagtacttctcaaacttttaagtgtacataaatcacttggggagctgctaaactgcaaattctgat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	69852155	69852466	1000445	0	+	52865; RIP_Alu_chr17_067_01	NA	NA	SINE	Alu	Yb8	tctttaaggtcccctggctgaactttaccatggcccagcactgaaagagctttaccttctggaaacttccatgaaaataagccacttccctcattagcat<br>aattttctaaatatgacaaagcatctcattgaaaacaaaataaaacaaaagacaaagagtattcatctttttcaagtacaattgccgcttctgagtggct<br>tagtagaagtgttaaaatagcttccatttaatagtttataataacaatagagactaaaatttattcacgtcccatgtttaaggaaatggtaaatattatt<br>tattcattaactcaatcacctcaaaaaccaccctaaactgaggccatgagaagttggctaacttgttcatgtttaccccactgtt<font color="green"><u>AAGAGTCAGAATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGTCAGAATGTG</u></font>aacccagataacctgaatccactacctacaatttaaaatcactctgctatatgaacattgtcactccatatgt<br>gcaaacatttcaaaagggaaatattcttatcacttgtaggtggggaatttggagcatgaagatattaactaactcatgcaagttcagagagctcttaaat<br>tagtgaagctgcaagtccatgccagatctgtcagactcaatagcctgaatacagctactaaaaccctacagaggctttgcaagagccactactgcaaggc<br>cttgggtgatggttagctaaaaataagtggtagtggttatcaattctagtatcatttatgttcttctcttagtcctctttaggagaatttatgagtccta<br>taataacattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	72620219	72620220	1000446	0	+	238963; RIP_Alu_chr17_070_01	NA	NA	SINE	Alu	Yg6	atatgtaacggagcctgggtcatccactttctacttgtccaagtttcctttgtgttctcactcatctatttcctcttttgccttttaaagaatgcttcct<br>aattttaagccttacttagcagaagagaaagggtggcaagagacgtttctgagaatggaccaagcacaaacaggaaaatctgttggccttcatttaatgt<br>gaacgtaatgtttgagtcaccccctgagatttcatgactcggaatttcatgaaagtcagtcccagtttacgaaacctctccaacagagaaaactctgttc<br>cctgcctctttcactcttcttcctatctgggattacttcatcgatctaaggagcttcccttctctatggctgcctacttttgaatcata<font color="green"><u>AAAACACCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>CACCCTC</u></font>tgtggtgatcactccccatgtctttctcaaccgttatctccatgcggatgacttcacacctcttcctctaacccaatatcccaatatctctcc<br>tgggctccagatcctactttctaacttcctatagggaagctccacctggttatacactgttaacctagttcagtatatgggtcatggtcaacagcataga<br>ttctgaagtcacacaaactcaaatctcatctccatcatttattaatcatctgaccttgggcatgttgccaaatcactctcctcctcagtctcctcatctg<br>taaaatagagtactcatgacaattctttctcaaagggttgccacaggaaataaatgagttaatgtaagtaaagtgcttgatacagtgcctggaaca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	promoter:CD300E:NM:181449	
0	chr17	73040300	73040599	1000447	0	-	238400; RIP_Alu_chr17_070_02	NA	NA	SINE	Alu	Yb8	acaggctgtcctgagaaagaaaggaaggacaggacaggtgtttgacaactttcttgaagatcctgagaaagactgcttccgcctcccttgcattccactc<br>caagcttatagagatttttgactttgcagtcttttaatatctgaccctgatcttacttaaagaggactattttcctatattctgactttttttttaagtg<br>gctgtagtcgttttctgtatttttctcacattttcacatgtgttgaatacctcttaaaatgcaggccgggcgcggtggctcatgcctgtaattccagcac<br>tttgcaaggctgaggtgggtggatcacctgaggtctggagtttcagcccatcctggccaacgtggagaaaccctgtctctact<font color="green"><u>AAAAATACAAAAATTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATACAAAAATTAG</u></font>ctgggtgtggtggtgggtgcctgtaatcccagctactccggaggctgaggcaggagaatcgcttgagcctgggaggtggaggt<br>tgcagtgagccaagatgatgccactgcactccagcccgggggacagagtgaaactccatctcaaaaaaaaaaaaaaaaaaagtgcacaacgtgtgctggt<br>gctgctagggtataatccgatgtgaataagaaggtgcaggtgtattaccaatctagttggaaggggatagcccttttaagtttgtaaaactctggagcaa<br>gttgctgtgcacaatttcatgtgacacttttagcagccctctggggcaagcaggactgataatgcccattgtacacataagtaaattttagcctagagag<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ATP5H:NM:001003785:1/5	
0	chr17	74987531	74987839	1000448	0	-	2265; RIP_Alu_chr17_072_01	NA	NA	SINE	Alu	Ye5	gggcctgaacccttgcttggtcatatgtgcaaaatgtcttgtgcagcaaaggtgcaacgaatgggggcgaaaacaagaagcaatgccttgagcagaagca<br>gctctgatggccagggcgtgaactagggctccagggccacgctgtctccacatttccaatcctcataggacctgctcctggctaagggcaagaacagact<br>tgggagaaggcagggagctgccccatgatgggtcccttcctggccaccccagagccgagccggagagttagaccaaccagctgtgtatagccagccctgc<br>ctgccttctccctgcccacctccactgacgcagggctgtggttacagaatgcaaaaagcccttgtattcctctgttctcacattgctatt<font color="green"><u>AAAAAACGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAACAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAACGCC</u></font>ttgagactgggtaattcataaagaaaggaggtttaattggctcacggttctgcaggctgtacatgaagcatggcgctggcc<br>tctgctcggcttctggagaggcctcaggaaacaatcatggtggaaggcgaaggaggagtcgacgcctcacatagggaaagcaggagctgggccaggaagg<br>tgctacacacttttattattatttatttatttattttgagatagagtcttgctctgtcgcccaggctggagtgcaatggctcgatctctgctcactgcaa<br>cctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccaccaagcctggctaattttttatattttt<br>agtagagac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	75988299	75988597	1000449	0	+	238600; RIP_Alu_chr17_073_01	NA	NA	SINE	Alu	Yg6	cagtgaagaatatatgctctttagggatacagcgtggtatggatgcagcgtatgcttgaaactcagtccgacctcagttgaatgacgacagctctgtggc<br>tctctcacttactgtctgtgtctgtacgcagaggtcctctgagcttcatcctctgatcctctccttgaagatgcaggtgatacctgtctcaacaagatcg<br>atttgaggagcgaatgaagtcatctatttgaaagaccttccgagcccagtgctgagtaaatgacagctcttgctaccattagtttttccaaagactgtca<br>cttcacactgtctgctgccctagtatctttgcagttggaactcggtatttatggaggattgtttgattttctaagttttatctt<font color="green"><u>AAGATTAAGCAAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATTAAGCAAAACC</u></font>actgggaacgttcacacttggactgtgttgccttggccccccagataattgctgactttttgcaaattccttgagttttcccgtc<br>atgctttttggctgtcaagaggctgcagaagatgatttaataaagcctaccctggcacacacatgctagcgcaaaaaagaagctgtctagtgcatgacta<br>cgtcgcctgtgtgaggtacccactaaaataacttacttttagacctgaatgctagggaaactttttcttcccttgtagaacaggtgggtgttcttatggt<br>tcatgagaatccgtaaaggacagagagaggaattgaatcaaatagtaaaataacgtggcaaattttaggttacctctgagtacgtgttaatccattagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	837119	837419	1000450	0	-	19444; RIP_Alu_chr18_000_01	NA	NA	SINE	Alu	Yb8	ccattttacaaatgagaatcagaagaacagagatcaaaggactgagaatgtgagcctaggtcatctggctgtaaaacctatgttcttggtcaccagtgcc<br>atgtggcctctggtgactgtgcctgaagtgccacttagaaaatagaagctctctagttctagatccctgaggaatcgccacactgacttccacaatggtt<br>gaactagtttacagtcccaccaacagtgtaaaagtgttccagccatcccattactgggtatatacccaaaggactataaatcatgctgttataaagacac<br>atgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggatt<font color="green"><u>AAGAAAATGTGGCAC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAAATGTGGCAC</u></font>atatacaccgtggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacgtggatgaaattggaaaccatc<br>attctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaataatgagatcacatggacacaggaagggga<br>atatcacactctggggactgtggtggggtcgggggaggggggagggatagcattgggagatatacctaatgctagatgacacgttagtgggtgcagcgca<br>ccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttagagtacaataaaaaaaaaaaagaaaatagaagctc<br>t	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	9385405	9385715	1000451	0	+	pAlu18-9375306;7480; RIP_Alu_chr18_009_01	NA	NA	SINE	Alu	Yb8	gggggttatggtgagagtatgagtgacctttccggctaaaccccaaagaggctccagttgcagctttatggagtgtgggtgtgagaaatgaatttgaaaa<br>tagcgagattatttgaagatctgtctgtagaacagctgtatgatttgataaccaattccctcctccattcgtcagaaaaagttccaagtaattaagaagt<br>ttctctaggaaaaagaaattggagaatttctttctagagaaattgaagggaactagctgaaaagaagtagggccactgatgtgttattggtacccaggca<br>aggcctcctcattcaggcattgtagggagggaaggtgtctccagcctaatgactagatgcgaaagaaaaatagaataagtgtagctt<font color="green"><u>AAAAGAAAGAACG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGAACG</u></font>aagtaaaaagcagaccaaggaggaaatatttaggacataaaagaaatcttttaaaaactgattgttatcttttaga<br>aaaagttaacaaagtatcatgtctgtattatgaaaaacaatcagaataagaaagcttttgcaaatttaaaattcaaatggggccgggcatggtggctcac<br>acctgtaatcccagcactttgggaggccaaggcggatggatcacctgaggtcaggagttcgagaccagcctggccaatatggcgaaaccccaactctact<br>aaaaatacaaaaattagctaggcgtggtggcgcatgcctgtagtcccagatactcaggagactaagacaggagaatcgcttgatcccgggaggcggaggt<br>tgcagtgagcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TWSG1:NM:020648:3/5	
0	chr18	12851197	12851511	1000452	0	+	pAlu18-12841099;3347;Yb7AD188; RIP_Alu_chr18_012_01	TTTTGGGGAGAAATTGACAAA	TGTGCATTTTCTAATTGCTGGA	SINE	Alu	Yb8	ggcacaatcttggctcaccgcaacctctgcctcccggattcaagcaattctcctgcctcagcctcctgagtagctgagattacaggcatgcaccactatg<br>cctggctaatctttgtatttttagtagagacgaggtttctccatgttggtcaggctggtctcaaactcccgacctcaggtgatccacccacctaggcctc<br>ccaaagtgctgggattacaggcgtgagccacagcgcccagccaggcattcttaaattttaagatttacttgacagcctagtcaatggtccattttttaca<br>aatagaccatgtcagtcctagaaaaatgtgcattttctaattgctggatatagggttctatgtatttttcttcttatattaaggtt<font color="green"><u>AATAATATTATATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAGAAAAAAG</font><font color="green"><u>AATAATATTATATA</u></font>aatctatttctttacaaatatcttgtcttattaagaagcccatgaacatggatttgtcaatttctccccaa<br>aattctattcatttttgcttaatacatcttggggctactttattagctgcatacaaatctcagagctgatactgacatctgcattcaaagtagttatgcc<br>atttgctaagatcatgcagggagcgtgccgaaagcatagaagttttcccttccttcttccccctctagtaactcatttaaaaagtatgtttatttgagaa<br>tctttttgttttgtagagcaacaaaccatggactatgtaacctgacactaccagaatcatgagtctctgtgttaatttcctttaaaatctgactgtttca<br>catggatgaaccttg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:PTPN2:NM:080422:2/10
0	chr18	25871820	25871821	1000453	0	+	2606; RIP_Alu_chr18_024_01	NA	NA	SINE	Alu	Ya5	gcaaagtcagcaacaatcaggagaaatgctctttctttaactgtaaggagtacataagcttgaaattactgggacctgtcaaatggagaaagtccgtctg<br>taaagtaaaacaatacaatcaaagaagagctaggagacaaaggaatagctgatcactgataaaatagttaaatcctcaatttagccatagttgttctatc<br>atttaatttgtaaatcaataaatgcatgttattttgtttaaaatagtgggaattcttttgttatgtaaaaattagagaactaaaatagaaaagaaacaca<br>aatttaaaaagaaaaataataaggacacttgcaagagaaataaaaaataaagtcatttctctttgtgtgtaggttgataaaaataacag<font color="green"><u>AATCACATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAT<br>CACATTTT</u></font>taatcttcaaattttctgttcagctaaatatagttaagaatacaataattataactgcagccaacatacaaatctgttttttgagaaagaag<br>acaagacttatattaagtaattgaagagtgttctggaaatatcctcaatgttctcaaatttttaacagcaagggcctaagacatgaggaagaccatgtgc<br>aagattgggactgcaactcctggcagataagtctttccctgctaatattcttatgctatagtagaagtcctggaagacacaactcatttctcattttctc<br>tttatgtaacttttgactttttttagtctttaacatcagcattaattatgttctagtataaattattgactccaaactggggcaaggaggattaaag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	31533210	31533211	1000454	0	+	3640; RIP_Alu_chr18_029_01	NA	NA	SINE	Alu	Y	accgggaggtggaggttgcggtgagctgaggtcatgccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaacaaaatgttctaac<br>atgacagagtttcacattatcaaagccaaaattgaggaagactactctaggagcaaaggcagatttatcataaagtcaataaaagtgaggcataggatgc<br>ctcaattggatgagcctcttaagtgctggagttcctggatgttgtaagcattctaggtaggaagggaaagccactttaaaatctggaagcatttatatgt<br>aagtgtgtctgaaaattgtctaacgagatgttagaagaaaagcgttttaatcttcaagatttcagtggtttctaaatttcttt<font color="green"><u>AAAAATATCCTACACAA<br></u></font><font color="red">ACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA<br>GCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGAT<br>CGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATCCTACACAA</u></font>cattttttctacctaa<br>ttttttgctcataattgtgtattacttttcttttcaaaaagatctcaagtcatataatcttcaggttttacaaaccctatttctgcctctgcctaggcat<br>aatgtgtgtgaagagggtaagaggaaagtagggagttgagttaggattatgcaagagtacaggtatgaggtatgaaagactagaactaaaataagaacac<br>ataaaattggaaactgtaagatttatttgggaaacagaataaaggaggaataagcagaattcattaagtggtaggatacaagacacaaaaatagtcaaat<br>ctcattctacatttttgagcaatggtaaaaatgacaatatggtgctattaacagcaggcaagtcaag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:NOL4:NM:003787:8/11	
0	chr18	41453443	41453755	1000455	0	+	3902;pAlu18-41341334; RIP_Alu_chr18_039_01	NA	NA	SINE	Alu	Ya5	gcacaccagcatggcacatgtatacatatgtaactaacctgcacattatgcacatgtaccctaaaacttaaagtataataataataaaataaaataaaat<br>aaaagttagcattaaaaaaagcaaaaacaaaaacaacaaaaaaagaaaagttagcataaaaaaaaaacaaaaacaaacaaaaaaaagaatacctacattg<br>ataatatgcaagcggttattgaaacacaattgtattgatgacggtcttataaaagatcagaagaatatataaaactataattactaaaactaattggtct<br>ggcacatataaattaaaaaaatttttagtttagaaagcatagtaataattttgtatattataaacttacattagctaattaaatt<font color="green"><u>AAAAAATGATGGATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGATGGATC</u></font>ggccgggcacagtagctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcag<br>gagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctac<br>tcaggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatcacgccactgcactccaaaaaaaaaaaaaaaagatgg<br>atcattaaaaaataaatattggtaaatattgggtcaattgttatcatttaaagttaaaaaatatctttaaagccaaatcaaaaaaacctagaaaacatta<br>tattatctcaatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	44338434	44338755	1000456	0	-	31575;Yb8AC1796; RIP_Alu_chr18_042_01	GCACGTTTTTATGTGCCAGA	CCCCTGTGCTATCCATGAAG	SINE	Alu	Yb8	tacctcataatttggcccagtgcaaagagaaatgcaaacccccttgttcaaaagtttgaagacagcaagagtggagcaatcagtcaaaatcaatggtggt<br>ggtggggacaaatgaacaagtcccactcccaagaagccagcctgcctgtgtgtgtgggagaaagaacctcatctcagaatcccaagacttgttgctaggt<br>gagttactttgggcatctgttgctttagtcctttcagctgtaaaatgggttagccaggggctaggaggtgaaaattcattaatatatgcaagtgaagcac<br>gtttttatgtgccagacagcaaacaaatacaggaattattataataatgggccctctaaatgttggagtttttctttaattggtt<font color="green"><u>AAAAAGCCTACCTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCCTACCTGT</u></font>gaccttgcagagaaatacagaaactcttcatggatagcacaggggccacttctgccttatgaa<br>ttaacacaaatcccgaattcttggtggaacccttatcatgagattttactgtgcattatttgatctttccagttcaaagaagaaactactaaatgccaag<br>gtcgagagtattggagtctgggcacttcccccatcaaagttcttgtgctgaggtttgagtttcggtcaggttcgctgttgaatccctggcctgactctag<br>aacatcccggagtgcctgctggaacctgggaaggggcaccctagaatcttccaaccggcctcagtggcgagcgccgcgggcacacgactcccagcgcttg<br>gagcctctgcggtgttaggatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	485	152	NA	intergenic
0	chr18	45099909	45100206	1000457	0	+	14275; RIP_Alu_chr18_043_01	NA	NA	SINE	Alu	Yg6	tcccttaccagaggcaattgccatctgaatttgccctgcccttattaaattataatttttattttgagaaattataaaaattcagaaagtaccaagaatt<br>cctaacaaacacctgtgtacagttgtatagcattgatcattgttaacaagttgtcctgtttgtttctcattaaataaagtaatgagggcattacagataa<br>agctagagctgtcttttaattgctggccagctcactccactcccaggtgctcagctgtatttctgcagcaaggtattagtgtatcctcaaatgacaacta<br>taaggtcagccacttagctgacaccaggccccagagggtatagcagagattctcatgagcacatacctccaagaaaaagcagatat<font color="green"><u>AAAAAGTAGCTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGTAGCTGCA</u></font>atctagcatggcccaattactttatggaatcattgaccttagttgtggaaaggccattagaaatcagttacaatggaggccagagagg<br>ctgagtgactgatatgaagtcaccagccaggtatgtcagagcctggactgcacctgggtctcccatcaagcactgaattcaaggtgagctcagttgccag<br>ccgtgtgaatcatctgaatcatgatacgcttcacgctagactttccaggataagtgagtggaactggggattgagcttcctaggagtggaaggtaaagca<br>gaaagccctttcaggttgttaagaaacatttttcaaatatctgggtccacttcccttgacaggaagtccctactgcttgacatcacacgtctttcttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	55801593	55801903	1000458	0	-	pAlu18-55586484;14586; RIP_Alu_chr18_053_02	NA	NA	SINE	Alu	Ya4	aaaaaagaaaatgtgaaacccttgatttgaggcactaaagggtatagtccaattatagaaactctaatgtcactctaaggaaaatctaatgtccttctag<br>aatgttccttcgctttccattgaccttaaacctgaaaggttttacttaaatccctcctactccatcaccctttccctcactacttcacactgtactaaag<br>gtcttcctttgtgaatatccactgtaatcacagtcagtagctcccaggttcctccccttcattcgcctcaggttccctgaatatcaaaaaaaaaaaaaaa<br>aatgaaaattgcttgaagacaaaagaaaaaagattaaaagaaaaaatagaaggggaaaaaagaaaagaaattctgattttcactt<font color="green"><u>AAGAAATGGAATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAATGGAATTGC</u></font>tttaactgatttgggtgacaaccgacagccaaattaagaatattaggccaggtgcggtagctcatgcctgtaat<br>gccagcactttgggagcccgaggcggatggatcacctgaggccaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaataca<br>aaaaatagctgggcattgtggcacgcgcctgtagtcccagctactcaagaggctgaggcaggagaatcacttaaacccaggagatggaggttgcggtgag<br>ccaggatcatgcctctgcactccagcctgggccagtgaacaagactccatctcaaaaaataaaaataaaaaataaaaataaagaatattaagctcacttc<br>ctttcatacct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NEDD4L:NM:001144964:1/31	
0	chr18	57258195	57258516	1000459	0	+	Yi6AH29;19421;pAlu18-57043068; RIP_Alu_chr18_055_01	AGTTGCATCTGGAACTTGAT	CTTCAAAGGATCTGAGGTGT	SINE	Alu	Yi6	taaaacaccaaaaaagaaaagccacaggaggaatatcccagacagatattaaaacatacaaccgcatcttaagttaaaacagggttgtatcgcacatgag<br>taagaggacagagaccaatggattagagcagaaaattcagaattagacctgactactttggaaattttgtatatgaaacatggtaactcaaatcactggg<br>gcaaaaatgggttttaataagttgtattaggacaactaaatagtccattagtaaaaagataaaattagatacagacttcactccatacataagaataacc<br>ttcaaaggatctgaggtgtaagtgtgaaaatttaaactacaaaagtgctagaaggaaacagggactcctctgtaacctgggcat<font color="green"><u>AAAAAGCTGCTAAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGGGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTGCTAAGTA</u></font>tgatcaagttccagatgcaactgttaaaaagaataaacttggctacataaaattacttttgc<br>atagtgaaaaatgccataagcaaagtcaaagaacaaaagaaaaactgggagaaaatatttgcatcatgtatcacaaattaaaggctgatatccctaatat<br>gtattaataattacatatatcacatatacatcgtataaactcaacaactggagggactccaaaagcccaagagaaaaatggacaaaattcatgaacacac<br>agttcataagataaaaatgatcttaagtgtgttaagagatttccaagtctacccataagaagactggcaaaaatgaaagagctcgaaaacactctgttgc<br>tgaggctgtagagaaacaggca	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	461	123	NA	intron:CCBE1:NM:133459:2/11
0	chr18	59728670	59728760	1000460	0	+	31724; RIP_Alu_chr18_057_01	NA	NA	SINE	Alu	Y	ggttctcaagagaaacactgaactcacaccagtagtttcagctgaatacactgactgtagtgtatgcttcctgagtctcaatttcagtttggtaaaatct<br>gctctgaagatgcatttgaaacacagagtactatgcctataaacagatatactatctaatgccctaataatacaatctttattatttaagaaactatact<br>tattaacctgcaactattaataacaggtgacaaatctctcaaaagtgttctgaaaatccatggcaatcaccacaacactataaacattacagatacatgc<br>cagactacattcacggggcagtcagctcccactcctctctcaaattctgggacagattcccgccatttcaggaataaatgc<font color="green"><u>AAAAAAAAAAAGCAATAAA<br></u></font><font color="red">GGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCATTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAA<br>AAGCAATAAA</u></font>aatagtgaggacaaaagggcaacattccattcccgtgaataaaaagcatggaatggctgaaatcgctaattatactattaacacaaagga<br>gtttaggaataaaattcgtcatgaaggggaaccagtgcaggagcacaattccaataaccccggcacctgtgaagggagctctgccggtcagtttataata<br>tcagcgacatgacaagaaacaccacagcttttcaaatgtaccttcacacaagaataattggaaactcaaaacttaaatgcaacattctcacaaacagaaa<br>gcagaaaaagtacaataatgaagttttgacatgtgaaccctatcgtatggtgctttagttttgaatcttgacgtacatttccccctacttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PIGN:NM:176787:30/31	
0	chr18	66572495	66572496	1000461	0	+	9510; RIP_Alu_chr18_064_01	NA	NA	SINE	Alu	Yb8	atccttttactttcatattctcttatactattcactgctatgttttgctaaaatcatgaattttaaatctcagtccctactaaatatagtgtttggcaca<br>tcctcataactgtgtgttaaatgcataagtttaagtattgatgcttctgttattactatttgaatttaattatgtttcctgatttgttttcaactcttat<br>acttttattctatcagtaaggcaaatataaggttattggaagtttatattattctttaaaatctccttcatgtgtatcaaacaggtgatatgttaaccca<br>tatccaattaaaacaaagatgcaaaatttgacaatttaaatcacttatatttaataaaataccatagcaaaaattatgacatttacgaatgt<font color="green"><u>ATAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>TAAATAAAAATAAAAATAAAAAAAA</font><font color="green"><u>ATAATTTC</u></font>tattttttaatgtttgatgtaactagcatactactaataatccactatattattacaaaataatgag<br>ataaataattatttaccttcctatttaaaaggacataaaacactattgttacaaagattatttaaaattaaaactaaaatgcaagtttgagttaaaatca<br>taagattagtgtaaactcagattaatagatctgagccattcactattcttttttcttctctttttcattaaagtgaaatttcataacataaaattaacca<br>ttttaaagtgaacatttagtggtatttagtagattcacaatgttatgggaccgccctgtctagccctgtctatttaattccaaagcactttcatcaccct<br>ataaggaaacaaagcaagcgtgatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CCDC102B:NM:001093729:8/10	
0	chr18	68846741	68847058	1000462	0	+	22399;pAlu18-68631614; RIP_Alu_chr18_066_01	NA	NA	SINE	Alu	Ya5	ccctatcactctaccctacagagatttgtaaagagctaagaaagtaccaattatattatttgagtacttgctggagaggcaagtttctctggacttccca<br>gatatgtaagccagtaaatttaaactttttgcttatgtttatttgaattagatgtctattacttgaaagactgatacagaaattggtaccaggatatagt<br>atattgcaagtaataagcagaaaaatattgacttccctgaggtaaagtaaagcttcttcattcccagcaaggatgctgtcaatccttgctatgggcacta<br>aaggagtgaattaagctattccctactgtattttagaactcagattatgagtggactggaggatagagctttagctccagaagt<font color="green"><u>AGAAAAATAGCAAGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATAGCAAGGT</u></font>gttgtagtgtgttaactaaatcctgagtcattccttacactgcaaggaagcaaaacagcttccatt<br>caagcttgactctttgagagagctaagtgcacagcacacgattttcttaaaagagggtacatcttcctatgaccagcaattcatgagctttgagattcag<br>actacgatgcatattgtgagatcacaataattgaattctctgtcccacattgaagctaaatttagtaatttaaaggaagtgcaaagcaaaagatgagaca<br>ttgttaagaaagaatcccaagaaataaacatgcagcctcagacttttcccaaacccctcctattttgtattctctacctgatatggtaatgaactatcac<br>attttaaagcatcatgca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	72152443	72152768	1000463	0	-	13456;pAlu18-71937323; RIP_Alu_chr18_070_01	NA	NA	SINE	Alu	Yb8	ttcaagtaggcagttaagaagatgcaaacaagcatacagaattaagcccttaaagtcttgtaaatcactactttgaaggaactccaattattcccatgac<br>taccctccacccaaaacagcagcagcagcagcaaaacctagtctaaacattttctatgagtacttcttgctctctggttcagaacaattatataatacct<br>taactctaagtatgttaaagaaagttaatttaatgaattcaaaaaattggctgcaatctcctccaattcagtgaaatctttctgcactatgccacagatt<br>ttcacattcaaaaagctcaaaagagcttcaaaacataaggcatcgctttttccactagtacttacaggctttttacaaaggtcaat<font color="green"><u>AAAAACATCATGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACATCATGGA</u></font>atgagagtaaatctcaatgtggctgtggttagtggttagatctgtcgttctggttttttg<br>tcctgtgctgtcatgtctgcgccttccggacagtatgttctctgttttactgccgttatttttagccatacatatattttttttactagagatagagttt<br>ggctgccatgtgtctgaataggagtcttgtgatcagcttaacactgcgtttttcttttttaacgtttgtcttttagagatgcattactgttgatgtgtta<br>gtgtggcacatagattttcaaaatatgacattttgaaagactgttctgaaatatcactgtacgtcatgccagcacaaagcaccagccaacaccgaacttt<br>gacctcaaatactgaactagccacat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	73570022	73570331	1000464	0	+	pAlu18-73332903;Yb8AC1776;238778; RIP_Alu_chr18_071_01	GCACCACTCTGTGTAGGCAA	GGCATACATTTTGCCCTTCT	SINE	Alu	Yb8	tggcacaagtcagcttctgggtaaggcatgcacattttatggcaccttatatagaccagtgaaataaatacacgagatgcaaagctcaaagtgatatatt<br>ccagatctgacatcttaccatggctttgagcttcaggcactgacaaatattccacacgtaccaactctcccagaggaggaaatataatgatgtttatgtt<br>atgcaatatgtaaaatatttatacgttgacttcaacacaaactgactatcatttaaatcaggaggtgccgctcacaataaaggcaagtgacattatctgc<br>accactctgtgtaggcaaaggggaactcagtacagcaaatgatccatttatgtacagaataagattccaccaatgtcagtgtttt<font color="green"><u>AAAGAATAACAGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAATAACAGTTA</u></font>tgggaaaggtttttaatgtgcttgcttcttctagaattgttaaattaccaagaagggcaaaatgtatgccttcct<br>gactattgcccttatctttagaatgggaaagtcttttcttctgacaaaccattttttcatgaataacctcttcaatagcatttagttatcattattaata<br>aattgttacagtaataaattatattttaaacattttattaaatgcagttctcatgtacttaaaataaattgcaaagccggcttttttcatggtatttaat<br>atatatagtatgacacaatgtgcttttaatatatttaatgttatatactttaaaatctaagtgtgttgtacttttatggaacttactttatattcctttc<br>tatatggaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	497	172	NA	intergenic
0	chr19	37046196	37046497	1000465	0	-	pAlu19-41722139;31012; RIP_Alu_chr19_041_01	NA	NA	SINE	Alu	Yb9	tagtaagggctggagtctaacagcacagtgtccctcctgtgtgcctctattccccaaagaatgttcaacactcctatgtgttcagtcctttgtcaagagc<br>agatataaagcaaaagttgaatccctagacttttccttgtcatattcttggatagggaaaaagcagatggatctgtttgataattgggcatactctgacc<br>ttctccacagacttgagtttccaggtagattgatttgatgttgaatggcctcaagtcatacaaaatgatgatgattgtagacgcagcattggagaagacc<br>ttctctaacctaaacgttggaatataattaaggctattatatttttaacaagaaaactactctgtagccactaaaaaacacttact<font color="green"><u>AAAAACTTTATCGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AA</font><font color="green"><u>AAAAACTTTATCGC</u></font>tggaagtaataattgttattatataatgtgaaataatatgtcacatagtaatgaacttggagctacaagaaatctttaatttta<br>ttcataccccattttcaaagttagatatttttctcctgtacaggggaatgacggtatagaaacttacctttattgatgattcatgaggcaggcacatagc<br>atgaaatgtgcttgtatatagtacttcttttaatttgtaaactggttattaatttccagacatggttggctaaataagagatcccataagtatgcagaaa<br>gatttcagtggatcaaagggagtcttgaaagatgatagtctggtttggaagcactaatttccttacttcccatgtcacagtcttcttttggcctccttgt<br>tt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF529:NM:001145650:3/5	
0	chr19	51776408	51776701	1000466	0	+	238246; RIP_Alu_chr19_056_03	NA	NA	SINE	Alu	Ya5	aaggggaaagttaatatctgccatgtgttgtcagatctaatttattaaaaagtagctgggagttcagacttttatgtgaggatcctgatttttaaacatt<br>gcaactaatgaaagaaagtctgtatgcagttttcttaatgcaggctaaataaaaccccctgcattttaactacctcacaaagccactaatttgcaaactc<br>tagactatcttaaatgaggaagcagttccctagtgagggaagggcctggcccagaaaaacctagaaaatgggaggcaaagaccaagcctttggactgctg<br>gccgtccactcacagaagaatctagaacccttcctttgaactggcttcacatccaagttgtatgggtttcctgttgctttcat<font color="green"><u>AAGAATTACCACAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAGAAT<br>TACCACAACTT</u></font>tagcagcttttttgttgtttgttttgagaccaagtctcactgtgtcacccagactggagtgcagtggtgcaatctcggctcgctgcaac<br>ctctgtctcctgggttcaagctattctcattcctcagcctcccaagtaccaccacacctggataattttctaaaaatatttttagtagagacagggtttt<br>gccatgttgcccaggctggcctggaactcctggcctcatgtgatccacctgccttggccttccaaagtgctgggattataggcatgagccactgggccca<br>gcccaattttagcagcttttaaagtaacactcatgtatgatctcacagaaggtcaaaagttctggtgtggcgtggttcccctggttttctgctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	24928813	24929081	1000467	0	+	Yd6JX352;16745; RIP_Alu_chr1_024_01	ATCCAAGGGAAAGCAACACA	CACACCTAGCAGCTCCCTTTAT	SINE	Alu	Yd8	tcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccatgctgggtga<br>cggagcgaaactccgtctcaaaaaaaaaaaaaatcatatatatatgtattagaagtgcactgattaataaggaaagctgtttccaatatattgtcaaagt<br>ttacaaaactatatatacatggtaatctcaatcatacacataggttacccatacacatatccaagggaaagcaacacagcaaggtcttaacaactggtgt<br>gtctacatgatggcattgttagtttttgctgggagggggatgttcctaatttttgaggaatggtaaacacgcattgtttttat<font color="green"><u>AAGAATATGAATATTAT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCAGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAG<br>ATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATGAATATTAT</u></font>ttataaagggagct<br>gctaggtgtggtggctctgcctgtaaccccagctagtcaggaggctgaggcaggaggatcacttgagccccagagtttgagaccagcttgggcaacatag<br>caagaccctgtctctggaaaaaaaaaaaagtttttaaaataaaggtagctaggccgggcgtggtggctcacacctgtaatctcagcactttgggaggctg<br>aggcgggcagatcacggggtcaggagtttgaacattgtgaaaccccatctctactgaaaatacaaaaaatcagctgggcatggtggcgggtgcctgtaat<br>cccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagctga	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	452	166	NA	intron:C1orf130:NM:001010980:3/4
0	chr1	27804129	27804441	1000468	0	+	19972; RIP_Alu_chr1_027_01	NA	NA	SINE	Alu	Ya5	cttctatatgagtacagattttttttaaatgtctttttaaggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgatgctggcaga<br>tcacgtgaggccaggagtccaacaccagcctggccaacatggcgaaatcccatctctactaaaaatacaaaaattagctgggcgtgttgacacatgccta<br>caatcccagctactcgataggctgaggcagaagaatcacttgaaccaggcaggtggaagttgcagtgagcagagatcatgccactgcactccagcctggg<br>tgacagagcaagacttcgtctcaaaaaataaaaaataatctgttgcaatgagcaagtattacttttgtaacttcaaagagattt<font color="green"><u>TAAAAATAAATAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA<br>ATAAAAAAAAAAA</font><font color="green"><u>TAAAAATAAATAAATC</u></font>taggatattagaaatgggaggcaggccgggtgtagtggctcatgcctgtaatcctagcactttgggaggct<br>gaagcaggtggatcacttgaaaccaggagttcaagaccaacctgaccaacatggtgaaacccccgtctctactaaaaagagacttgggaggctgaggcag<br>aagaactgcttgaacccgggaggcagaggttgcagcgagccgagatcctgccactgcactctaacctgggggacagagggaagactctacctccaaaaaa<br>aataaaaaaggaaagaaagaaaagaagtagaaaataaatttcatgcaaatagcaaagcaaaaaaaaaaaaaaaaaggatatgatgtaagaataagcaaat<br>tagtagctgtggt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:WASF2:NM:006990:1/9	
0	chr1	28247808	28248108	1000469	0	+	pAlu1-27480751;238884; RIP_Alu_chr1_027_02	NA	NA	SINE	Alu	Yb8	tgtaatcccagcattttgggaagctgaggctggcggatcacttggggtcaggggcttgaaaccagcctggccaacatggtgaaaccctgtctctactaaa<br>aatacaaaaagattagccgggcgtggtggtgggcgcctgtaatcccagctactttggaggctgaggcaggagaattgcttgaacccaggaggcagaggtt<br>gcagtgagctgagatttcgccaccgtactccagcctgggtgacagagagagactccatctcaaaaacacaaacaaacaaacaaacaaacaaaacccatat<br>aagtggacctgtgcagttcaaacctgtgttgttcaagggtcaacttattgttcaatgctaaatttattaaactctaatagctaataaaactt<font color="green"><u>GAAATCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>A</font><font color="green"><u>GAAATCAA</u></font>acctttgggtatttaaacattgtttacacatttaattaaatatgcttaaaattttaaagtgcaattaaagttttaggatggctgattctta<br>taaatacttcagatatcttaaagagcagacaaaacatacagaaacaatggtttactgggaagctggtgaggtttaagcttcagggcccctcacttgcaca<br>gcctcttccaagggtctacattcatacttacttttgtatcttactttgcattctttttcttaaagaaagccacccaaattatgtaagcttctggccacac<br>aaaatctagatcctcatgtcccatacttctttggatccttgctttatttattttgttatcctcctaaggcttctgtaccattatttatttatttattttg<br>a	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	36474696	36474697	1000470	0	+	52475; RIP_Alu_chr1_036_01	CTGTGGAGAGAACAGTAGCGCAG	CAGTGGTTACATTAGAGTGGTAGG	SINE	Alu	Ya5	aaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacgtaagaaaagtttgtca<br>gagcagcgatggtgtgaggcagcttgctctagttagtggggttgggagtttttctggctcataatgggcaagaattgttcatgtgtacttttttttcctc<br>agctttcctttacagttagaaaacggccaaactgtggagagaacagtagcgcagtatttcagagaaaagtatactcttcagctgaagtacccgcaccttc<br>cctgtctgcaagtcgggcaggaacagaaacacacctacctgccactagaagtaatgccttcacactgctaattaataccctgttg<font color="green"><u>AAAAGAATCATGAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGAATCATGAAC</u></font>gataacttacctcatacagaacatttattttggaatatgaactgtttttaagttttaatttattctaaattttctgtaatgaa<br>ataacacgaaacaagttcatccataatcctaccactctaatgtaaccactgttaacattttggtatactatacttctttcagtcttcatctggtgtacat<br>tttacttaattatacttaattactgtagagctgtcttgtttactacttttttacttaacatattgaaaataagtggtttaatgaagttgattttaaattt<br>ttatttacatgtaattggcactaagtaagagctaaaaaaaaaagatatatacatgtagtacaaaacttttttccatttgtaggtctgtaatattgtggca<br>gg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:EIF2C3:NM:177422:6/17
0	chr1	43857471	43857791	1000471	0	+	1438; RIP_Alu_chr1_043_01	CAGATAGTCTAGGACAACACCGTC	CTACTATATGGGGCTACTGAGCAC	SINE	Alu	Y	tgttcttaaccatattgttcatggtataagtaataaagtagccacagaatggtaaatctccagttcactgggatttggtgtggtaagacccaacattgaa<br>tatggtggtaggaaactatgccttatttaaaatagtcatgttcacagaggtggtagaatagctcatgcatcagaaatatcaatcaagatcaatcagaaat<br>attaacacaagaaaaactatgaaacagtttagaggatgtttcattatagattaaagtgaaaggaggtggagggatgttgtggggaaatgcaacatacctt<br>ttaggcagatagtctaggacaacaccgtcctgtagaaatctaaagcaagccacatgtgtaatattaaattttctgatagccacat<font color="green"><u>AAAAAAATGAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATGAAACAA</u></font>atgaaataaaatgtaattatatatttaacccaaaactcccaaaattttcaaaatgtaataaaat<br>acaaaacatcgtgagatatttaacattttttttggtaccaagtctttaaaatctagtgttgtattttacactgatagcacatcccatcttggtctagcaa<br>cattgtaagtgctcagtagccccatatagtagtctttaccatatagagcagtacagatctaaagtaatttcaagtcaagacacacaatcctgggagtctc<br>agccaaaagttaagcttttttttttttttttttgagacgaagtctcgctctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctc<br>cgcctcccgggttcacgccat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:C1orf84:NM:001012961:1/5
0	chr1	45795710	45795711	1000472	0	+	14332;1104685509304; RIP_Alu_chr1_045_01	NA;NA	NA;NA	SINE	Alu	Yb8	taaaaatgcaaatctgactcctctctcctccacctaaaatgagtcagcagcctagggctcacaccctgactgacccagcaggccctgctgacctttccag<br>ctaaaccaactgctcacagctccttgagcactgcagcctgcactgggctccacctttgctcacactactcttgggactggaaagaacatcgctacggttg<br>attcccctcccaaacctgaagaaaaggattcatttctaggacgaagattaccagctgcttcctccaaacagcctttcctgatccgtctcccaattagaac<br>tgatagctcccatggatgggtgtggtggctcacgcctgtaatcccagcactttgggaggccaagatgggcagatcacttgaggtca<font color="green"><u>AGGAGTTCGAGACC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GGGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGGAGTTCGAGACC</u></font>gtgaaaccctgtctctactaaaaatacaaaaattagttgggtgtggtagcaggcacctgtaatcccagctact<br>tgggagactgaggcaggagaatcgctttaatccagttgtgggagattgcagtgagccgagatcgggccactgcactctagcttgggtgacagtgagactg<br>tctcaaaaaaaaaaaaaaaaaaaaaaaagaactgatggctccacaattcatatcccacaaaactcagtacaggcatttcacacacctgtgacactggaga<br>gtcctcatcatttttttcctttccctctaccctgcaccccacaatggaaggtctccaggtcaagaactattcctccctccagtgaagcctggagtggaga<br>atgttcacccaga	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MUTYH:NM:001048172:15/16	
0	chr1	56401294	56401603	1000473	0	+	pAlu1-55758902;9984; RIP_Alu_chr1_056_01	NA	NA	SINE	Alu	Ya5	ccacccccatgattcaaattatctcccacccggtccctcccacaacacatgggaattatgggagtacaattcaagatgagatgtgggtggggacacagcc<br>aaaccgtatcataacactaatgcctagcacaacatatggctcattttatcaataaagactcattgaataaataaattcatgagagagaaaaaaacagcta<br>ggacaattccaggggctgaattgagcctggacattcatcactcaagatatctcaagggagtgcagccaggaaggaatcattgttgaaaaactgaaggtca<br>aagtcaataaatccagaccacatgtcttgtccaaagacagaatatcaacctaagaatgagttggcaaataaagagtttggtgagtttat<font color="green"><u>AGAAATATAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAATATAGG</u></font>acaaggtacaaggaatggctgaaggagagaggttgtcctgttcatttgggctgctgtaacaaaataccttagatttggt<br>ggcttataaacatcagaaatgtattgctcccagttctgaacactgggaactccaagatgaaggtactggcagagtcagtgtctgtggagggctcacgctc<br>tggttcatcattagcactttcactgtgtccttacagtggaaggggcagggcaactgtctggggactattttataagggcactaatcccattcatgagggt<br>gtcaccctcatgacctaatcacctcccaaagtcctgacttgataccatcgtcttggggattaggtttcaacatatgaattttgaggtaacaaacattcag<br>accatagcag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	63461952	63461953	1000474	0	+	11594; RIP_Alu_chr1_063_01	NA	NA	SINE	Alu	Yb9	ctgttggggtcttcacattccttcatctcattaatatatatgggagtgtgcttccgctgcttcgctccctgatgcagactgtcctcaggttggcaaggag<br>tgggcaggccctgcagagtcccgcctgaggcctggcgaggctcagatgcaagctcaggatccaagcaggtatcttctttgtaatttccaatgggttttct<br>ttgacttgagaagagacccttcgctgacctctcaccatgggtcaggcctgctgctaagcaccttcttatgctattttgctttatccttaaaacaaccctg<br>caatgtaggttctattggcttctctaagtcacacatgtaacaatttgctcaagcttactcagtacagctggcattctaattcagcc<font color="green"><u>AAAAGGGAGACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGGGAGACATG</u></font>aacaaacctctcgcaatctccaacatacttgctcttttagaaaatttgaggccaccatcttctacattaaaaacaaagca<br>aaccaggcacaggggcttatgcctgtaaaaatcccagcactttgggaggccaaagtgggtggatcacctgaggtcaggagtttgagaccagcctggacaa<br>gatggtgaaaccctgtgtctaccaaaaatacaaaaattagctgggcatggtggtgcctgtctgtagtcttagctactcaggaggttgaggcaggagaatc<br>gcttgaatccaggaggcagaggttgcagtaagctgagatcatgccactgcgctccagcctgggtgacagagtgagactccgtttcaaaaaaaaaagataa<br>aaaaat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	66263924	66264242	1000475	0	-	14541; RIP_Alu_chr1_065_02	NA	NA	SINE	Alu	Yb8	taaataagaagtactaatatttttcaaatgcattaagataacttgaaaaaaaaatgttccatagagtaaacgtcacataccaagatttttgtcttagact<br>ctacagacagggtatgatttgacatttaattctgtaattacagtaatattaattaacttaatttaaataagctatcttgaactaaggtttaaactatgtc<br>tccacacctaacagatatatattacagggaaatacaatcaaactagtattttcaatgatagtaatggataatgtggttgaggatttaaactagagtgttt<br>ttaaaaagccgggtgcagtggcttacgcctgtaatcccagcactttgggaagccaagacaggtggatcacttgaggtcaggagttc<font color="green"><u>AAGACTAGCCTGGC<br></u></font><font color="red">ACGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTAGCCTGGC</u></font>caacatggtgaaaccccatctctactaaaaaaaatacaaaaattagccaggtatggtgttacacacc<br>tgtaatcccagctacttgggaggctgaggcagaagaattgcttgaacccgagaggcagaggttggagtgagccgagatgcaccactgcactccagcctgg<br>gtgacagagcgaaactccatctcaaaaaataaataaataaataaataaatttttaaacatttttaaaattaaaaaataaaaataatgcaaggggcatccc<br>aaggaggactgagaatggtggcaagagggaaatggactgcttagtgacctctaggctggaggaacagtagagcaatagagcagtggatgtcttccaactc<br>tctattcaacagcagatta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PDE4B:NM:002600:1/17	
0	chr1	71741333	71741629	1000476	0	-	pAlu1-71125971;21214; RIP_Alu_chr1_071_01	NA	NA	SINE	Alu	Yb8	cctgagaacccactcactttcagaagaacagcagcatgggggtaactgcccccatgattccattacctcttaccaggtccctcctatgacacatggggat<br>tatgggaatgacaattcaagataagatttgggtggggacacagccaaactgtatcagctacattgaacaaaatacctttttaaaatatctaaatgttatg<br>atgtgatatgatattattttgtcatgtattaactcaggtttatacataaagttttcaccagatccttggtaactacagccaatgttagatacaatattta<br>taatttcctaaataacatcccttctatgtaattaattctataaaaataaatgcattgatccagtaagaacagaacttttattcagtt<font color="green"><u>AAGAACAAGGAAC<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AACAAGGAAC</u></font>tctccagagagtttagaaatcagggttaaaggcctcaaagtcatattaaacaaagtataaagtaatgtaacagactttacgttaaacatg<br>gaacattaaatctgtacatatatgtccatattatctggaaatcctactaaatgattgtaaaagaagaaaaaattttataaaataaagataaaatgactaa<br>gaaaaaaagacaacagccaataagcgtgccaacaatatttcagaaggtaagatgcaacaagatggctagtaactgagtataatctgtgttttctgtggtt<br>tcagtgactattaaaggaaaggagtgaagttggggtacaaaaatcaaaagaagcaagctgattcataccactaacaccataaggatttaggccttta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	76011882	76012195	1000477	0	-	55223;pAlu1-75427689; RIP_Alu_chr1_075_01	NA	NA	SINE	Alu	Yb8	gatcctcttcagacatttttataacaagttagtatgagtttattttggtgcaaagtttttaaaatccatgcatggttctttttttcataatacacacttt<br>ccatgaaccttctgaagacccttaatataatcaccagattcctaggtaggagttagacattttcgaggactgattaaggagcattggaacaagacagagc<br>tagtcttcgattttagttagaagtttgtggcaagacttagaagtttcaaagttttacaaagtagaaaatggttgagtaacatagaatgtcggctgtaggt<br>gtccttaacatgttacattggaaatgtaaaaattaaagaaaaatgcgattaaaatttaaaaataggtttaaagataccactttt<font color="green"><u>AAAAATTTTGAATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAGGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTGAATTTG</u></font>aacagtcttatgaagaataaaaatacaaactaaggagaagaactttcaaaaaaagaatgggctgggcacc<br>ttggctaggagttgtaaccccagcactttgggaagctgaggtgggaggatcacttgagcccaggagttcaagaccatcttgggtaacatagggagacccc<br>atctgggcaaaaaaaattagcttggtgtggtggcacacacccatcatcccagctacttgggaggttgagttgggacgaatcacttgagccgaggaggttg<br>aggtttcagtgagccatgcttgtgctgctgcaatccagcagcctgggtgacagaacaagaccctgactcaaagaaaaaaaaaaaaagaaaagaaaaaaga<br>atggttaattaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC44A5:NM:152697:1/24	
0	chr1	81351530	81351531	1000478	0	+	8258; RIP_Alu_chr1_081_01	NA	NA	SINE	Alu	Ya5/8	tactggtcatattatatgctagctaattctctaagatttgtcagttaaacatttgcccatatgtaaattttaacagacactaatatattcctttccaaga<br>tgattttaatagtctgtctccccattggctttacttacacaagtatttttcatgctactctgtgatagtactgaaaatttatcagtactgctcacttatg<br>cttatctgatgaattttgtgtttttctgtcatcagtcatttctgtaaacctaaaggatctattaaatactttctcgtttctcagcacacactcttagtaa<br>tgtttcccacagagattattaaaagaaacaaatagttactttatacatttaaaaagctataatcccatcctaactttaagagagtctaaaa<font color="green"><u>GAAAATTGC<br></u></font><font color="red">GCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAG<br>CGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTGC</u></font>ttatcctcataatcaggaaagggggattagatggttaccaagtttatttaatg<br>aaaaaaacaaaccttaagatgaaccaaatattcttagcaaaaagtaaggaaatcattaatgtattatagttatgattttgagcatctacttcatgccaga<br>cttcatacacatatctttccttatccttacagcatcactgggaattaaatagttgacccattttaaacgctatggaataggctctcaagagagtaagttg<br>tataaagtcataaaactggacattactagagcccagtttttaaccaagttctttctgtgaaatgattcgcattttcttcccagaaatgtatacaatttac<br>tctgctgcactgttaacaatcacttataccacctggct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	83042655	83042964	1000479	0	-	545; RIP_Alu_chr1_082_01	NA	NA	SINE	Alu	Ya5	atcagcagatgtatagttaccatggcagcagacaagatatggatgatattaggcaaataaaagtaaacaaagataataatatttaaaagatagaattttg<br>ggcagaaaggtaatttgatcaacactttagttgatgggttttttcaactttaagaattatagggattatatcttaatttcaagatatttaaataattatt<br>attttaaattaattggattatttttaataattagtcacagactaaacaagaaggaaaattctaccagatagaaatataaagattccattttataatgtct<br>gtcaatatagcagaaattaaaatgtaagtaaataaataaaatagaggttaaacaattttctcataaaagttgacaaaaaaatttaaagtt<font color="green"><u>AAAAATATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAATATAA</u></font>atacaagctacataggaattaatgagagtaaaacattttgataaaagttaagcaatgtaattaaaatcaatatttaaagt<br>tcaattaaagatgtgaattgagagccaggacagcaacaaaagcaattgcaaggaaaaataataccaaatataaagacaaattaatgaattagaaaaataa<br>aacatgacccagtaaattataaagaagaaagtatagcaacaaaggtggagtttttgttttaagttatacatttgctttttgaaaatatgtgttaaatatt<br>tgaaattttcaataaacagagtcattttctaggaaataaatatttattcaagaaaagcaaactatactgatgaattatcatggaggagactgaaaacatc<br>atcaaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	94251468	94251771	1000480	0	+	10372; RIP_Alu_chr1_093_01	NA	NA	SINE	Alu	Y	aatgtgctagctataccaaacatgtctgtgaaccatatttggatgtatacaaaaagatctagctatatcacaggattgtgagaaggataaaatgagatgg<br>aatagaaccaacaataattaactagtgaatatgcatcattaatgcttttaagaaaaacccacagatataatacaaaataggtcagggtctggtgacaggt<br>tgtactttccaaagatggctgcaataacatttcccatccacatgctatttttataaggtaaccatgacactttttctatcaaatggtggaggttactttt<br>cctcccctgaatctgagtgggactttatgaattcctgaaacaatagtatagtggaaattatacgatgtgacttccaaagctagtaagtcat<font color="green"><u>AAAAGTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCCGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGTGCC</u></font>atgcatttctgccttgctccctgggaatgctcatacctgtaacccagcctcaatactatgagggagcccaaggcccctgtggagtgc<br>agaggaccatgttgacaggaaccaaagcacccagctcacacacttagctgggctcttagccaaaagctagctctaactggctagctatgtgagtaaacta<br>tctcgaaagtgggtcctccagctcccatttaagtagccccagctgagaccatggagagcagagacaaagccattcctgctcagtcttgcctaaattacag<br>attcataatcaaaataaatgaatgtcattgctttaagtcactaagcttaggagtgactttttacacagaaatagataaggggaacaggatcaaatgttga<br>attt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	95690525	95690829	1000481	0	+	7377; RIP_Alu_chr1_095_01	NA	NA	SINE	Alu	Ya5	gccattctataagatttcatgatctcagaaatcaagtcatcaaggaaatgacaaaataatgcatgtacaagccatcttgtctgctgcctggctaatgcca<br>aggcgagatgccattgatgttttggagcttcttgatttcagagacgttaaaatatatataaaaaatgcatctaaaaagtgatatacagtctgggcatggt<br>agctcacacctgtaatcccagcactttgggatgctgaggcagaaggatcatttgaggccaggagtttgagaacagcctggacaacacagcaagaccctgt<br>ttctacaaataataataataaaataaaaagtgatacataaagaatactagactgcccatatcactacaggtacctcactttgtcaa<font color="green"><u>AAATAAATATAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>TAAAT</font><font color="green"><u>AAATAAATATAATT</u></font>ataaaattatttgaaatagcgagtttgtttaatgcattaaaaattatttgaataattgctggctgcagtggctcctgtctg<br>taatcctagcactttggaaggctgatgtgagtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaa<br>tacaaaaaaattaggcaggcatcgtggctcatgcctgtagtcccagctactcaggaggctaaggcaagagaatcacttgaacccaggaggtggaggttgc<br>agtgagctgagattgtgccactgcactccagccttggtgacagcaagacttggtctcaaaaaaaaaaaataaaaaatttgagtaactactcagtctgtgt<br>aaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	103047693	103048008	1000482	0	+	7148;pAlu1-102338773; RIP_Alu_chr1_102_01	NA	NA	SINE	Alu	Yc1	tcccacccttgacacctggagattatttcaattcaaggtgggattttgatggtgaaactgagccaaaccacgtctgtgagccaagatatctacattcatc<br>atcaaaatgggaccttcggaatttcctcagtgaggttactaaccctagccatgcatatccacgccataccacactgactagattcactaaggtctgtcat<br>aaggaaggcatccaaattgaatagcattttataactgaggagcactagagagaaaaggtgtgatcatagcataagatttgttctgcttcaccccagaagt<br>ccacaaatgggaaaaatgagggcagctttaatttgctagaaaaaagcaacacctgtattttgagtatatatcaaaccctgaggatt<font color="green"><u>AAAGTTCTTGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTTCTTGTTTC</u></font>agctctccatctaatggattatagtatacaaagttcagctttttcggttactgcttttaaagttttctaa<br>tatgattaatagctttaacaaaaaggtatctcttaagtgtgcaatatagttgctttctctcacatagacagtcttgtttggaaacaatttcttttgatgt<br>agttctaaagaaatatttacctttaacaggaacactagatattttttcaatgcagaagctttttttctgttataaagagagcaataatctgtagtataaa<br>gaattaaaatttaaaactaactactgtattgaatgaagactttgatttatacctaataaattttagaaagttttaaaagctaattttataaattatttta<br>gtcaatttaagggata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	103096081	103096385	1000483	0	-	53299;pAlu1-102387157; RIP_Alu_chr1_102_02	NA	NA	SINE	Alu	Ya5	acaaaggttagctttctcgtggttcaaaaaataggctttaatattttttctttttttaaaatgaatccagaaactataagaaagtcttggcaaatcatgg<br>aactagactcttctttttatttctaatatatcagtgtcaatatttttaatagagtctacatggcattaccctagtcattattcatttaaaaataccaaaa<br>caaacaaacttgctaatccaatctgtaaaatggccatgagtttaattttgcaaatgttattgagatctatttagtaagagtgggatatccatcaagagtc<br>ataatgatatttataaaatatgtatagctgcctagtctacttaaaaggaacatccagcacaatcagggcaataactacctttttat<font color="green"><u>AAAACATTATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCGGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACATTATTACT</u></font>gttctattagtgctataaacaaagtattgtgctactccagtgaaatgaacattattcaccaattggaaccagcaaagattc<br>catgaaatgctaattgaaacttggattttgatgggcatatatgagggatagtagggaacttcaagaaaaaaagcgtggtgtgcaatctgccacaaaaatg<br>ggatgaaccctagcaattgttgctgtcagcaagatgtctaggtgatgactactactttcttctcttgctttggcctgctaactggttctgctgccttctt<br>gagagcacacaccttgaactgctgctggctggctatgatgctcatcagctcatgttgggcttgcactttgagcactattcccttgtgctgctttgtgctg<br>catat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	105428321	105428639	1000484	0	-	5866;pAlu1-104585259; RIP_Alu_chr1_105_01	NA	NA	SINE	Alu	Ya5	cagtccttaagaatcttggcatgactaacataagtgaatttgtattaactatgagaaaatatcaaggaaaaggattatagatgtccatgttagataatcg<br>gagctcatgtttttgtctctaatgactcattattctttacaaatattcataactaatttatctgtgaccaaaaactatatttcatcaattctaagatgca<br>taatttttacattttaaaatatcttaaattatagtgcatatgaaaaagcaaaggaaaatatcaacagagtaaacagaccacctacagaatgggagaaaat<br>attcacaaactctgcatccaacaaagatctaatatccggaatctataaggaactttaacaaatcaacaagccaaaaaaaacaaaccatt<font color="green"><u>AAAAATGGGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGGCA</u></font>aagtacattaacaaacacttatcaaaaaaagacatacatggagccaacaagcataggaaaaaatgctcaa<br>catcagtaatcatcagataaatgcaaatcaaagccacaatgaggtaccatcaaacaccagtcaaaatggctattattaaaatgccaaaaaaataacagaa<br>gctggtaaggttatggagaaaaggaaatgcttatgcattactggaggaaatgtaaattagttcagccactgtggaaagcagtttggagatttctcaaaga<br>atttaaagtaaaactaccattcgatccagctttgccattactgagtaaatacccaaaagcaaacaaagcattctaccaaaaacacacatgcacttgcatg<br>ttcattgtagcactattca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	112991996	112991997	1000485	0	+	32729; RIP_Alu_chr1_112_01	NA	NA	SINE	Alu	Ya5	ctatggaaaatataacatcagtgatcctttaatggctctacagagagattttgaaacactgaaggagaaaaatgatggcgaaaagcagccagtctgcaca<br>aatccactctctattcttaaggttgtgatgaagcagtgcaagaacatgcaggagcgcatgctgtcccagctggctgctgctgagagcaggcaccgaaagg<br>taggttcacctcagttgatgtgtaaatctttgtgaagtctttataaattatgcctgatactttcttgtcagctgccagtttttcacagtaattcaattgg<br>gacatctcacgggtatcaaaaagccccttagtttatgtaagagccaggagataaaaaagaaaacacagcttattgcaaatgttaag<font color="green"><u>AAATAACGTGTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAATAACGTGTCTG</u></font>aagacagcatttcttcttgatatgtcactccaaaacactttgtatgttttttcagttcttgatcattcaaactttggggtttgg<br>ccaagcttgtagctgacgggagtgttctctatttgcttacttaagagataaataaaaagattaacaggtatttgaggcatgctatatccaagggagagaa<br>agaatttacctgaggataaacacagaagccaatagattattttcatttattcctattattcctagttttgagtttcattgcattttgttgctcatgaaac<br>cataaacagtcccttggtttatttaccttaaaggtgttctactctattagtgaggggtgtgtgtgtgtgtgtgtgtgtgtgttttccatatttaacaagc<br>cc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CTTNBP2NL:NM:018704:4/6	
0	chr1	115043531	115043832	1000486	0	+	14400; RIP_Alu_chr1_114_02	NA	NA	SINE	Alu	Ya5	agtttttaaaatgaactttcacaagataatacattttagtataagagtgagcaaaaggtgaatggccaaggtttgtcttggaaaaagaaattttttaatt<br>aaaaaaaaaaaaaggagcaaaaggtcaagatcagtcgagataatcttgaagatgaccaaggtatacgtagagagggcagtgaaattaccttaatgaacaa<br>aacttactgcttattattataaagctactaagaacagcaaaaaaaaaaggaggaaaaactattttaatataaaaacatgaaaagacagctctctaaaaag<br>tgtatcagttatctattgctatgtaacaaattacctcaaaaattaatgacttaaaacaacaataattatttctcacagctttcttgaaac<font color="green"><u>AAGAATTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAATTTGG</u></font>gagggacttggcaggcagttctggcttagtgcctctaagaaggctgcagtcaagatgtcagccaggaaggactgcagtcatctgaaag<br>cttgattaggatagagaatctacctcaaaagcggctctttcacatagctggcaagttggtgctgggtctttgcagaagacctcaatttttctccatatgg<br>cctctttaaaggactactagagtatctttcacagaatgacagctgtttttcacccagaacaagggattcaaagagcaaggaaaaaactgtatatatggct<br>ttaatgactttttaataaagtcactattaattctattatattctcttggtcacggagaccagccttgagcaactggacagcaaccatacaacggtgtgaa<br>ta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TRIM33:NM:015906:1/20	
0	chr1	206533156	206533473	1000487	0	-	17726; RIP_Alu_chr1_141_01	NA	NA	SINE	Alu	Ya5	atagaagctcccttaattggtcttcccttgctgcttccaccctactcctcctaaagcactctcttcacacagaagctggaataatcccatttaaacagaa<br>gtcagactgtatcatgcctctccagtcctccagtagcctccaaggcccttcctgaagaaacctgctcgctgccccagaccacatctcccaccactcttcc<br>tcttgcctactctgtacaaggtctccttactgtttctcaaaccagataagcgcattcccatctcatggccttagatgtgcactattatctctgcctgaaa<br>taccttcctcaaagagctaaacagcaaaatccctcatttcctccaagaatcagttccaatgccaatttatcagtgaagccgtctct<font color="green"><u>AAAAGAGCAATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGAGCAATATC</u></font>cttgtaccccatcctctttgccctgtttcattttatcatcatctgatatattatatatttacttttttatgtattatctgtt<br>tcaactattagaatataagctccatgaaggcaagaactttttgttatctgctatattccagtgcctagcacagtgcctggaacatgggaggcacactgta<br>aatatctgctgaatgactaagtgaactgctgaatgactaagttgaatgacctcctcccacctcatgtcaggccactcagtcctgtctataatgtctttcc<br>tctgccttctggtaaatctaattcttttagttcccattgtcattatccaagtttctattatccctctgaattattgtagcaggctcctatatagtttctt<br>ccat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SRGAP2:NM:015326:1/20	
0	chr1	146658221	146658222	1000488	0	+	11425; RIP_Alu_chr1_143_01	NA	NA	SINE	Alu	Ya5	tgactgtgagcctagaaagttgaaagtaatttctttattgagaaaataaagacatggttcctaaggaaaagggctaaaaatgaccatgtttcaagtacac<br>tagtgaatagcaagtgaaacaaaatgtcttaagcatctatatgtcttatcttagatacatacaactattgtaggaacattatttctcttatctctcagga<br>aacatatttagttataatatgaaaaaaaactaaaattgagcttctaatagaaaatcaaaccctatcagaagaagagttacgtggagtaagcgattttata<br>ccgatgctgacttactctccctaccataaaatttgataaacaacaaacatttattaagcacctaccacatgtcaagaactctgcta<font color="green"><u>AAAGACATACAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAGACATACAAAG</u></font>cctgagctcccagtctagggattaccacaaggaagagtgacggatcatgagtggaagggagatgagttaatacaaatggaaaac<br>aggtttcattgtaggaaaaaggaaagtgaattaatgctttcgaaagagacattaaagtagatttctgggcaatatgaaactgagagtcaatctcgtcaga<br>ttctgaaggcatctgtagataagcttcccaatgaaaaacagggcagtgacaataggacaactagaagtaagctataattatagcaaagaaggcaagagct<br>agcataaacttgcctattgtcattgttgaagtcatagaactactcctttcaactactcttgtcatcagaggcttcctgatgcgatcatctgtggtgagga<br>ta	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	exon:3UTR:FMO5:NM_001461	
0	chr1	182952024	182952308	1000489	0	-	238935;Yg6AH108; RIP_Alu_chr1_179_01	GCGAAGCATGTGCCACACCATG	GTTAGGGCTTTAAGAGTGTATGAG	SINE	Alu	Yg6	aatggcaaattttgttatgtatattttacaacttttttttttaggaaagtgaacaatgcacgttggaatctatagtgcaactgctagaagaatagtaaaa<br>gaatatataacaagcaagctattcgaggtgaaaaatcaaatagaaaatgattcctttttacctgtctatgtacaatgcaataaaaagttattaataaaaa<br>tgtattcaggtgaaaaatatactgaaaatgttcactaaaataatagtaaaaattgtgtgttagggcattaagagtgtatgagatttgttggcctcagttg<br>tctaaattctctatactatggctattggctcataatatactgctttgtcataaaaccacctctatcatgtaaaaaatcttgctt<font color="green"><u>AAAAAAGTGATTTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGTGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGCT<br>TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTGATTTAC<br>T</u></font>gtttcaagtggatatcagatctgagctgtttgtgagacaattattaaaagaaccactaatagaagtcacagtttctatcaacttagaaatctttcaaaa<br>cagaatatctctggttttcctaaccatggtgtggcacatgcttcgctatagcaagttgtacttaggcattttagataaaaagtaggtaactcatctggat<br>aatttactcataatatgttcactttcagcaaaagcttaaccaatatctgatcagtacttggatgaaaattaagtccatgcatcaacacattagctacaaa<br>aggacaagttcttgttgtgtctaatataaattctctgttagttttcagttgcagcacacaaaaaaagttcagtttgttctagaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr1	196779193	196779194	1000490	0	+	2978; RIP_Alu_chr1_193_02	NA	NA	SINE	Alu	Ya1	aaccctcgggggtccagttctacactgttctttccctctttgcaataaatcttgctgctgctcactctttggttccacactgcatttatgagctgtaaca<br>ctcactgcagaggtctgcagcttcactcttgaggccagccagtgagaccacgaacccactaagaggaacgaacaactccagatgggaggaacgaacaact<br>ccagatgggaggaacgaacaacaccagacatcccaccttaagagctgtgacactcactgaaggtctgcagcttcactcctgaagccagtgagaccacgaa<br>cccaccagaaggaagaagctccaaacgtgtgaacatcagaaggaacaaactccagatgcatcacctttaagaactgtaacactcaccg<font color="green"><u>AAGAATGAAGCC<br></u></font><font color="red">ACGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAAGCC</u></font>aagtcagtgagaccaagaacccactaattccagacacactaccattactaaaacaaaatgccatggatctgggaa<br>gcagcaggcttgagcaacatcattactggagtgatgtatagcatatgcttcagtgaaacaaaggaaattcaggtttctcacacacacacatgctgatgtg<br>gtttgtatctgtagaaaaaatgcatcctgtatgacccagtggtggtaggacaaagaagtctgcgtgtgagttctatggatggatccctcaacgaacaacc<br>ctctcctactgctgctgtgccctttgcctgtgatacagcctttttgtgagcataagttgtttgagtcctgtgaattccttcagcaatccaacaccaacat<br>tcttaccacctgg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	217754091	217754377	1000491	0	+	18079; RIP_Alu_chr1_214_01	NA	NA	SINE	Alu	Yb9	tgaaacattagtaattatgatgctgatctctagtaagctaacctttcaacttacaaatcaataaaagctaataggtaaacaattttacttctagaaaaac<br>aaatctgtatcaaacaagaagtgcttatatttactaaagtatatatgattatggtgaaaattttccccgttatctcaaaatggcagcaaagagaactgct<br>cacctcctactataatttttctttataattagtgtacagcattaccttcggtaatctcaatcctttcacttttatcatcctcctcctttaaaatctttcc<br>tttccccaactatcttctcaagctttgctacttactaagagtgggtcccaggccagcatcatcagcatcttctgggagcccatt<font color="green"><u>AGAAAGGCAGAATCTC<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGCAGAAT<br>CTC</u></font>aagttcctcccacgacttattaaatcagaattgacattttaacaagatccactcccaccagccccaagatccgctgggagattaaatttaagcatct<br>ccgctctacacttggtggaaaggatttctagcctcacggtctgtgtctcttgttcttaccctttatatgttttcattggtcctcaggttaataaggttag<br>taagcatcttaaaaactattgatttcaaaacttccattttacagataaactagaaataaactttaatgcctagcacaagaccttacaagaaaaggccctt<br>aataaaagacaagttggaagacaaaggcaagatgacagagaagttgaagctaaaagaggttaaggatttagacggtttctatagcta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GPATCH2:NM:018040:5/10	
0	chr1	219923324	219923626	1000492	0	-	865; RIP_Alu_chr1_216_01	NA	NA	SINE	Alu	Yb3a1	tggcaaatcaaggaaacatgtccattcacctcttttcatctggtgatttgcttcttcaagctaaaaatctcaagttgcagttctggcattagtttcttta<br>ggaaaactgagattgctttacaaggtctcacatcttcagttgaaagtcagatcagtttccatatccagaaaagtagcttcctctaatctgctgttttgct<br>ttctgcagtttcagttacctgcagtcaatggtggtcagaaaatggaaaattccagaaataaacaattcatgtgtttaaaattatgtgccgtttgagtagc<br>atgatgaaatgtagtgccatcctactctgccttccccagggaatcttccctttgtacagcatcaccatgctctaagatccaagtt<font color="green"><u>AAGAATGAGTCCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCAGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATGAGTCCATA</u></font>aaattgtgaagaagggaaaagaaattctttccggttttgctgtcacacctcagactgcaagttacaaccacggtgtgtgatg<br>agagttaagatgaagaaggcattaaatttgtgtgtggaagacacaaatagaaatgcattctggttgatagcaatcagatttggtactatccatggtttca<br>gacatccactgggagtgttggaacatatcctcctggagaagggagcaactgctgttcttaaccgggtgaatctcacacccagagcttgctatttgcatat<br>agttctctatcactgatgcatttattaacaagatataccatcaagagggtttttgattaattgtttggcagtctcagtgtgtcctggctcacaagagcta<br>atc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	224392835	224393134	1000493	0	-	8542; RIP_Alu_chr1_220_01	NA	NA	SINE	Alu	Ya1	tggctctgtgagctctggtctagtgtctacgcagaggacaccaagcaggccctgggacacagcaatcctgagtgtgtttggagcagaaagcagcccatgg<br>tggctggaccacagggagagatggcctgggagagtcaggcaggagcctaatcatatggtttacagccctgcgtgtgtgtgttggggttgggggggggggg<br>ctgggtgtgtgtatgtgagcaacgtgtgagtcatgtgggatgggaggcccccttgcactttccttctcagccccttgccacctgacatccacactcacac<br>atcctcacaggcagttccgttttgaaaacctgatttcatgtggccagtccagtcttaggacaaatatatattcatagaaggcaattt<font color="green"><u>AAAAAGCCAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAGCCAAGTC</u></font>atctcaacccgagctacactagatgcacggctgtgtcagttaccagagtccagctcggtgttggctaatagtggaagcacaacttcc<br>attgccaaagctcagagacagaaactccggagatggagcaggcagataagtgtgtggctggcgcagagccaggccctcggagatgacgagcatgtctctc<br>accagccccttctgcagtgagtggctgtcccacgggtctctccagctgccaggggagaatgaattagggtgttgagaattacccaaacccaaggctgggg<br>agggtgtgactccatctaggccagtccttgtctttgctaatccagcatgacccaggcctgctgtggaatattttggaatatattggaatatttggaatat<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	228024107	228024400	1000494	0	+	33258; RIP_Alu_chr1_224_01	NA	NA	SINE	Alu	Ya5	ggcaggacgatagcttaaggccaggagtttgagaaaagcctgggcaacatagcaagactttggttataaaagagagattttgtttgtttgttttttactt<br>ttttttttttcgagacaaggtcttgctctgttgcccagactggagtgcagtaatatgaacacagcttattgcagcctcaacctcctaggctccagcgatc<br>cttcttcctcagcctcctgagtagctgggaccacaggcatgcaccatcatatccaggtaattttctttattttttgtagagatgggggtctcattttact<br>gcccaggctggcctcaagggatcctcccgcttctcaaagtgctgggattacaggtgtgagccaccacaccaagccaaaaaagttttt<font color="green"><u>AATAAAAGCTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AATAAA<br>AGCTTCC</u></font>cttccataacagaattttcattggaaactctcatctttcatgtgagaatgcctttattttatactctacatttttatttgagacattgtttac<br>aaactctaaaatccacaaatattgtgtacagctgaattatgttaacatattcttttttcattttttaaaatgttatttcttgtaacattggagttacaat<br>gaatttttaaagcaaattccagatactatatttcatccataaatatttcagtgtagacaaacattttatttatatatttatttaatcttattttattctt<br>ttagtggcagggtcttgctctgtcacccaggctggagtgcagcggcacagtcatagttcactgccgcctctaactcttgggctcaaatgatcct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PRSS38:NM:183062:3/5	
0	chr1	231085163	231085164	1000495	0	+	16963; RIP_Alu_chr1_227_02	NA	NA	SINE	Alu	Yb8	ctgttcactgtatggatgtcagccattcattccacaattatttactcagggcctactgttagctatctcaggttccatgtgctaggaataccatgcaaag<br>tcatgctattcttgccacatactaggaatagcaagcaaaaaccaacacagaagacaaagatttgcctatcagatcaaagtcagctctgctaagcctattc<br>ttcccaaagggaagcaagcaggacaacatggctaataatagtggggtgcaggtcaatggaaaacaagagcccgatccagggtaacaggaaggcaaagctc<br>tatgacagatgtgccacagtgaatgacgtatggtggccctccagctcttgcagctggaacatttttatagtaataaaaattttaaatt<font color="green"><u>AAAAAAAAAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCNNAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAA</u></font>aatttgcaacagctgaaatatccgaacactgacaacttcctaaaggtagccatcatcatcttgactgcaggattggatg<br>tgtgccccacacagaggccctcgcacgggcctcccctcaagtcaccccatggtctcatcattactacagcactgaattgattactgtgcttatctgtaaa<br>gtatttaggttttctctattcaatttattctttccttttttttttattttttatttttgagacgaagtctcgctgtcgcccaggctggactgcagtggcg<br>cgatcttggctcactgcaagttccacctccagggttcacgccattctcccgcctcagcctcctgagtagctgggactacaggcgccagccaccatgccca<br>gctaatttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TTC13:NM:024525:4/23	
0	chr1	232423134	232423446	1000496	0	-	10270; RIP_Alu_chr1_228_01	NA	NA	SINE	Alu	Yb8	ttaagtaaacacctaaatgtcatcccaaggagaattgctcaagaatttttattagtttggatgaattcttccttccttcctttctctctcttgttttaac<br>ttcttcaaaatttaatacacattctctgtcctggtttagtctttccactttccactgggcaataacagaaaacagcttgcattgtacactttgtttaaaa<br>aattgtttccaatgaagcaccaggagggaacattaggagtctgaggtccaatgactgcagttggcttatcaggccagttgcacaagtcagctccagtctc<br>tggacctcggtttcctgatctgcaaatggaatcagagttatagtctcccagcttcaccctcagagaaagcataaaacatgggttt<font color="green"><u>AAAAAATTACCCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTACCCTTC</u></font>atcgagtgtttggaggttaggactgcagaaatgcatcaactgacatcatcttctttgagaactttaggagat<br>ttaatgatatctaattcaaccttactaaatgcttgcaaggtacatgaacaatagtgttacacagtgagagatcaccagcttgatttatttatatataaaa<br>tatattattgtaattataatacattaatattaacatattatgaatatattatatactaatgtattactaattatatactaatgtatgatgtaatatataa<br>caatatattaatataacagacattaatctacatagcattatatactatatattaaaattatatataaaaatataaatatataatacataatatatataca<br>ttaatatagtgta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	234587212	234587512	1000497	0	+	pAlu1-230962376;239259; RIP_Alu_chr1_230_01	NA	NA	SINE	Alu	Ya5	taccctcctcacaagtttattttctatcatacgtgcatattaaaatactgcatattaatttaaaagagaaacactgtccgaggccttctccattacatct<br>cttagaaggtttgcaaataaaagtcacataatttcacaactcatctttggtcacgtataatggtgaaacttttgttttaaaatctaaatatgttctcaat<br>ttcctttttataatatctgtcttaataagcaaattcaataactgagtttaaatatgaagaaaataattatgaaatgagtctttctaaaaagtaagcattt<br>ttgaaaaattattttttgtgtccattagggttacccaaagtttactataaggaggcaaaggaagaatacatcacctgaccaaagataaaac<font color="green"><u>TGATGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>TGATGAATG</u></font>actggatcatcgaagtggtcaggactaaaagacaccacacaggtacaatgagtgagcaagtcaatgacgctaaaggaggttgttctgtgt<br>aggtctttatcaagtcggataatcttaagatattattgtctaacagtgaggtcagccggtatttatcttttaacagtatacacttttctttgcattcctc<br>taaaactggccagactgcgttgcctaattattgctacaaaatacgtgaggcttttcgaatcttgtatttccacaggcatgattctgctgtatcaaaatta<br>tttttgacaactaaactctaattcatatttgatttttttctttccctctatcaaatctgtcacaaaattcagaatattttcccttcaaagacttttcatg<br>t	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TARBP1:NM:005646:9/30	
0	chr1	236054592	236054913	1000498	0	-	Yb8NBC485;238508; RIP_Alu_chr1_232_01	TGTTCTTGCCAGAAAGTTTGC	CCAATCCAGGACTCGACATT	SINE	Alu	Yb8	tttgaatgataaacaccacattctggataaggatgatctctaggaagaggccatgggagaaacatatcaatgaagtctcatatccataatgttgtcattt<br>taaatgcaagtcttattttgggataatttatggaaaaattgcaaatgtagtccaaagagttcccatataccccttcgtcccattccccccagtgttgaca<br>tcttacataaccatggtacagaaatgaacataactcagaaattaacactggtacaactaaacgttagattttattcagatttcaccagttttttcacaaa<br>cgccctttttccatttcaggatccaatccaggactcgacattacacttagcacacctatattgttttatatgtttgaaaagttt<font color="green"><u>GAAAAAATGTTGGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAGAAAAAAAAAGAAAAA</font><font color="green"><u>GAAAAAATGTTGGCAA</u></font>actttctggcaagaacagaaacttcattatattgctttctggccattattggagggaacata<br>gtgcttatgagggaggctctggagataagacaagcaatccagcttcaaattctggctcaagcactctctagctgtgtgcttaatctctctgagcctaaat<br>ttcctcaactcaaaaatagggatgataacagtatgtaccacttaggcttactctgagatttacatggattaagtcacacaaggcaactagaaattgtgat<br>caagaaatgttagctattattattaattgcatatgtaattcacaacacaatttttctaaaaatagctcctttgagagtctctggagtccatcttaataag<br>aaatcacaaccttcattgtaaa	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	433	95	NA	intergenic
0	chr1	236594940	236595250	1000499	0	+	52547; RIP_Alu_chr1_232_02	NA	NA	SINE	Alu	Yb8	ttgagcttcctttttcgagtgatgccgaggaaaaacatcatagtgtcctagtgtcaaaaattaaagtctaagccaggcatgcttgtggtcccagctactc<br>aggaggctgaggtgggaggatcgcttgagaactggagtttgaggctagtctggcaacatagcaagacctgtctcttaaacaaaacaaaacattaaggtct<br>gacatttcaagtgcaatttcagaaagaaccctttacttttagttatttaaaatcaataccccatctactagaactattcaacttctacaacttattacaa<br>ctggtatttattgaggatatactctaagaccaatctgaactgggtattcttggacataaaaaatacaggaggaggaggtggaagtt<font color="green"><u>AAGACCCCAGGCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGACCCCAGGCAG</u></font>accttatagacttgttggagaggcagtgcacacagtttgattctcggatgtgtgtaaggctcagatgtgtaaaca<br>atttccatgatactttaaggaaaacatttcctaggacctttatcaatcaataaagttttaattactttaacgacatgcataagcatatggcaaatgaaga<br>taaagcaaaaatttgttccagctgggtacggaggctcacacctgtaatcccagcactttgggaggccaaggtcagcaaaacctgaactctacaaaaaata<br>caaaaattaaccacacctgtggtcccatggtcccagctgctcaggaggctgaggtgagaggatcgcttaaacctgggaagcagaggttgcagggaatgga<br>aatcgtgccac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:EDARADD:NM:145861:4/6	
0	chr1	241149874	241150181	1000500	0	-	pAlu1-237446358;15544; RIP_Alu_chr1_237_02	NA	NA	SINE	Alu	Ye5	gctgaaaattatgaaaatacttgagttttgtaaaggatgcaaatcaaatgtgttctattttgcttgcttacagagtcctcatatcttatatttacaaata<br>ttttgcaatttttttcatgaatgcttaatatttttgtgcacctctaattcagatttagtttgtggatagctgtaggtgacacttgtagctgaggatgtgc<br>tctaatcctggggaggggtgcagacgtggaccgtaatggaagtaatacaggcttaggacagagcctggtccaggcctttgcactctgcagggggcacagg<br>taaggaagctcgtttgccgttcagatccgtggcatgggtgaaaaaataatgttgaagtttaagatcaatttaacatcatgttt<font color="green"><u>AATAATAGTGGTGTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATAATAGTGGTGTTTA</u></font>aattacatgccagtagaatattctttgcatgaaggatactattctttttaaactctgtgaaaatagaatttgggg<br>aggggagtcttgctatttattcattcaatcttttgttgaggggtgggcacaacaggcttcctggagtagataatgtttgaattgaactttatggcctcag<br>ttgggattcaccacaggaaaaagagatgaagatagaagagcattagcaaaatcatggaaggaagaaacagtatagcaggtagaaaactatgagcagtgtg<br>atgaggaagaattctgcttgtttgtttttgcttgttttcattttaaataatatactgctaggattcgacagtaataaaacctctactgcttctgctgagc<br>agacggag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RGS7:NM:002924:3/18	
0	chr20	2514992	2515089	1000501	0	+	19981; RIP_Alu_chr20_002_01	NA	NA	SINE	Alu	Y?	gttcagtatctgacttccaaacttggatttttgaattccttagaaataattgtggaaagcagggtttgttgtgagagagaagaaatctgccaattcctag<br>atcactccttcagacaccaagggctaaacccagccaccagacagcaaaaacacatcagcccctgaggacaagggtctctgtttcatttgctgatgaatcc<br>ccagagccgagaactgactctgaccccagtgggtgctcatttttatctgtgaggagaaaagtggagttatcgactgtgtggacagtcaggtacaagggaa<br>tttgatagtcctatctggagggaatttctctccggagatgaaggtgttgtagaaagcctttctcctctggcaacagagaacaac<font color="green"><u>AAGAGCAGGGTAAAGG<br></u></font><font color="red">CAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAGCAGGGTAAAGG</u></font>gctgctgggggtcctcactcatcaggggagagcgcttggggcacccccagcagaaaccttactcaccagtcctctgggccacgctg<br>tcctgtggctgcacagctgcccgtgctgcttctcacatggaccggggtcctgcactggcatggccctggtggggagagggatttgcggctgcagtcctgc<br>agtatggatgccagagaatgcaactgagatcctcccactgccctcatgccccggggactggggcggccctgcaggaaccagttgggtcggagatcaaggt<br>gtgggacaaagagaaaagcttcaaagcttgagatgaaccgttgcacgtgcattttagaggtagctcctttgccccttccctcgccaagcttgcatgag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr20	11517279	11517588	1000502	0	+	79712; RIP_Alu_chr20_011_01	CATCCCTATATTACCCACTCCAGAGC	CACTCACTATCTATCGTCATCCAGC	SINE	Alu	Sx	agagctgtgatcataaaagctaactaaatactgccatgaaacagctaggatttggatgcagaaacagagtgccagagaaacactaaacaaaatgacaaac<br>cacagttaggatctcaggaattgagaagatggacctgtctggcagctgaaaacattgatgtccatcattaatgcagagtcaggacttcccagagacgaaa<br>ttcttctgcaggaaaaagggtgcaaccatcagcctctgcccttcctccatgtgagatctctttctcagtctccagggaagcaatgtccttttgcttccta<br>ctaaatacctggacctctccatccctatattacccactccagagcaatttgcacagtgctccacactttcccctaattccttctctt<font color="green"><u>CAAATTCTGTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACAT<br>AGTGAAACCCCGTCTCTACTAAAATACAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAATCTCAGCTACTTGGGAGCCTGAGGCAGGAGAATCGCTT<br>GAACCCAGGAGGCGGAGGTTGCAGTGACCCAAGATCGCGCCATTGCACTCCAGCCTGGCAACAGAGCGAGACTGCCTCAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CAAATTCTGTCTT</u></font>acgtgcaaacttccaggatttagctgtccgctggatgacgatagatagtgagtggattaataaaagctatactccta<br>gcaaaatgttttgttagatctcagtagcaatgcctcaactgtacaaatgtgcagactttcataattgcccttaagtattcactaatcctggaaatttcaa<br>gcaaagtagctatctctctgtgtggagaaaagatgttaagttatttgaggttttcagcatgctgaagtttacattataaaaggaattgctaattccacct<br>acacccttgaaggagggccatccattaacaagagaaagcaataccttagggcaaagtttctgcctatctgcaagggaatataccaattactaagacaact<br>ttatccccta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr20	22655338	22655650	1000503	0	+	15678; RIP_Alu_chr20_022_01	NA	NA	SINE	Alu	Yb3a2	actggtttctttatgctgtcaccatcatatcatttcatccagtaaatgttttgctgtgtaccactaaaatataagaagtcatcttaaaaaatataatcat<br>atcgactggataaagaaaatgtggtacaaatacaccatggaataccatgcagccataaaaaaagaacaaaatcatgtcctctgcagcaatttggatgcag<br>ctggaggcccttatcctaagtaaattaaggcaggaacagaaagccagtagttctcatttctaagtggaaactaaacattgggtactcatggacataaaga<br>agcaacaatagacactgggcactgctagaggtgaggggtaggcagggggtcaaaattgaaaaagcaactattagataccacgctc<font color="green"><u>AATATCCAGGAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AATATCCAGGAAATG</u></font>ggattatttgtaccccaacctcagcatcacgcaatatacccaggtaacaaatctgcacatgtaccccctgaa<br>tgtaaaataaaagttgaaaaaaatacaatcttaatactattactgtatgtaaaataatgagcaacaatttcctcagtatcatcaaatatccagtttatgt<br>ttatatttccaattgtctcataaatatcataatctttttttagcggtttctttaaattaggagctaaattacctattgcagtgagttgttttcaatctcc<br>tttaactggcaggtgtcctccccaactctctccctttctttctctttgcctcacactccactgccctgacctccttttctccctatctccccgtctccat<br>tctttgcaactca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr20	38337648	38337769	1000504	0	+	pAlu20-38975973;15950; RIP_Alu_chr20_037_01	NA	NA	SINE	Alu	Ya5/8	aaatttttataccattcagcagtagaggagaaaaatatctcttaagaatgaggtgtaagaggtagacagcgctgtattgaggtggtactgccactctgac<br>agcaactgagtatatgaagtttggcaaaattcccatcccaattggggagctaccaagtcatcacacatgcatttctgttggaatcattttatttctaccc<br>taaatgataatagaacatatggatttggggatagcagagatgaaagccatttcttccttgtaagtttccactgagggattgtactcgccaaagaagtaca<br>aatgcattttagatctacaatcatttatcaattatcaaacacctatcaaaatcatagggttggctctatattatgttggaagaat<font color="green"><u>AAAAATATGACTCGA<br></u></font><font color="red">GAACCCGGGAAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATGACTCGA</u></font>acaggcccttgaccttggtggactttaagtgagggagaaataaattatcccagatatttgcaa<br>tgctagaaagagatgcaaagctaagatgggtaaagaagaagtagtaattaacaccttgaagactatttagcagttctccaagaatataagtagaaaacat<br>acacgagagctctagggatacagaaagggcatgaagttagtgttaaacaggcctaatcctggtttctggagtctgccctttggcagagacttctgtgttc<br>cactgaattgtctgttttccttttcttccttaagaaaaaaaaaatctcaattttatttagaataacactgaccactagaagtcaacattttccaaattcc<br>tttgcattttggtgtggtcatg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	53292666	53292965	1000505	0	-	pAlu20-53930983;55626; RIP_Alu_chr20_052_01	CAGATTGGTTGCTGGCACTGAAC	GCTGAGATCCATAGACATGTACATG	SINE	Alu	Ya5	ggcagagttttatagtgaagattagaatatttgatataccaggcactgaagggaggttttctgtgctgagatccatagacatgtacatgattagcctcag<br>aggggtctgtgatcttgtagatcatcttacgatttaatgtgcacagctgaatttttccaaagagtgtgttcgagaaatatttgccaacaattcctcagtt<br>gtggagaagtgggaaatgccttcatgaaggttcaagtctaatgaggacaatggaaagtgaagagacaaaaaaaaattgggttcactagacaaagggggcc<br>atggcaagggactcccactcaatcttgagattcaaggaattaacttttgagacaaaacacaaggaatggttgggacttaaccaggt<font color="green"><u>GAAATTAGGAATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GAAATTAGGAATCA</u></font>aaaaggttaatatctagtgacctagaagactctatctaagaacagcagaagaggatgcaagatatggtgtatgcccataacagccc<br>acctctgcagccaggacccaaactctcaagggccaactctctttgctctgagaggtcagaacaatcattttcccataagtcagagcttgacaacagtcaa<br>gataccaaataggcctacaagagcagcgtccacaaaaatgcatcactagtgttcagtgccagcaaccaatctgtccttgtgcaagttattgaggacatga<br>aaatatcacagggagacccgagctccaagcgcttgaagcagtcacattattatgcactgttcaaagccttgcagaaacaaaactgagaccattctttgcc<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr20	54463235	54463537	1000506	0	-	31590; RIP_Alu_chr20_053_01	GTCACTTCTGTCTTGGGGCTTATGG	GACTAGGAGGTCATGGGCTCTCATG	SINE	Alu	Y	ttgggtggaactctgccacgtggccacatctaactgcaagggaagctgggaaatgtagtctggccatgtgcctacagactaggaggtcatgggctctcat<br>gggcacatggcagtctaagtaatctatggtcactcttctctctgtgcgctaattgtccttaaaggctccatgtgtattttttcacagggccattgctatg<br>aacctatagacagaacccactgccctgatctggtcaactgttacttttctttggctatcagttcatgtgtcactcccccagggaacacttccctgatcgt<br>tcccccagacatacctcaccaactagactcttccttgttatatgctataataaaacctcatttcctccataccatctatcttcatt<font color="green"><u>AAAAAGAATGCCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAGAATGCCCA</u></font>catttatgtgatagttttattattgtctccttaaccattagaccataagccccaagacagaagtgactgttttgctcatattg<br>tattcctaagaatctaggcaatttctatagccacttaataaatatttgttatatagatatatgtgtatatatatatatctctgtgtgtgtgtgtatatac<br>atgtatgtacacatatatatatatgtatattagaatcccatcagtagtttcaagcaatgatatataaattacactcttattctgggactgctttacaaac<br>tgtcactgagtttctctggagacaattgagaagtggagttgaaaatattcctttcaacacataaacagatttctttttgtagatctctctcattatgttt<br>ctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr20	57785912	57786120	1000507	0	+	Yb7AD42;Yb8NBC479;2907; RIP_Alu_chr20_057_01	CATCCTGTTTCAACATCAGCA	GTTCCCAGCAGGAATCTGAG	SINE	Alu	Yb8	gccctgagcatgaggctgtgtcagctgcagcagggacacctgctcctctctccccctccacaggggacacagttcccaacgtgttccatggaagttggca<br>cccctgcctcatctgcagcttatcctgcatgctcatggtgaccctgggggcctcagtgagcagagagcccagaatgaaaagccctttcaccccttcttcc<br>cttcagcctcagggaagggtcctgcacgctcaccccatggactaatggaggagtcccagagatcctgagctccctccatgtgggggaaatcccacttcca<br>taaacatcctgtttcaacatcagcatttcattgctttcttcacacctaaatcccaagagcaaactgggggcaccaatgaatggtgaataaaac<font color="green"><u>CAAATCC<br></u></font><font color="red">CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>CAAATCC</u></font>aaggagaaaaaaaaattcagaaacaaaacctgaatatagatctaagaaacaagtggctttccatagctcagattcctgctggga<br>acacagctccaccaccccatccccttacataggtaataaggccccagcaacagcctggaatggtgacaaatatctatgctttcatgtttgttatttgagc<br>atccagttgaaccaggggcctaggtccctggctcccattttcaaaggccctcctctccagcaattaggaaggacatggagaatgtccactgcagggcagc<br>tgtgagctgcaggatgtggtagaagccctagcccagagaatatcaatcactgcctgctccttattgaagtgtcagagagggaaccgggaaggctagtagg<br>gcaaaccag	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	NA	NA	NA	intron:ZNF831:NM:178457:3/5
0	chr20	60570639	60570943	1000508	0	+	13096; RIP_Alu_chr20_060_01	NA	NA	SINE	Alu	Yb9	caagaaagtgtgcaaggccgaggaaaacagcagtcgagagaaactgaatgtgagatggcccaggtgttgaacttgacaaaaaccttataaaacagcttta<br>ataataagctcaaagaattaggggaaatataaactgtaaaaaagaactagatggaaatcttagaattgcaaaataagttaacaaaatggaaacttcaact<br>ggagatggcagaaatccatctgccaaggacctcgtagacacatcagtagacatcttccagtctggaaaacaaagagaagacagactgaagtccaggaaca<br>caggctcaaagacctgcagggcagcatcaacaggtctaacatacatgtaactggagccccagcagaagaaagtaagattgaaatgg<font color="green"><u>AAAAAAAAATTTGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAAAAATTTGA</u></font>agaagtattagccaaaatgttccaaatttgatgaaagacactgacctacagatctgtgaagttcagagaacctgaaacagg<br>ctgaatatcctgagaaccacagcaaaacacaacacagacaaacctctaaactgaatatccagagaaccacagcaaaacacaacacagacaaacctctaaa<br>aaataaagaacatctcaaaacaaagattgaaagtcatgccagagacatgaagcataccacgtacagggaacaagcttaaaaattatagcaggaccagccc<br>atgctacatggtgagaccctgtctctacgaaaaaaaaagaaactacaaaattagccaggcatggtggcacgcacctgtagtcccagctactcgggaagct<br>gaggc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TAF4:NM:003185:14/15	
0	chr21	30601826	30602156	1000509	0	+	54074;pAlu21-29522172; RIP_Alu_chr21_029_01	CAGTTGTTAACCTGGAGTGCACAC	CGGGTAGCTCTTTATAGCTGTGTGAC	SINE	Alu	Yb8	cttttgtaaaaacgaaaataagacataaacaaataaattaattacaaatttgctgtgagaccaaaataccacacagcccccaaaagctgagatagtcact<br>gcagatattgaagatctgcattctaaaccacatgttttatccccaatgttcagctcaatgtattgtgcttggtagattcttaattattatttgttcagta<br>acaaatataatgatcaggtctttgcaggagtattaaattaaaatttgtctgttacactttaatggtcagttgttaacctggagtgcacacaaataatgat<br>agatcagcaaggagggtctaaaaaccacatactaggaagtccaatggaagaattaggcgtgtacagaagagaaggttaatttattaagaga<font color="green"><u>CCGGCTATT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAGGGGG</font><font color="green"><u>CCGGCTATT</u></font>ttattatagattgtcttattctgtcccaagggaagtattctaattgatgttatagggagg<br>caggtttaaactcagtattaagaagagctttctataattaataaaagacaatgatatggacttgtattagtttgttgtcacacagctataaagagctacc<br>cgagactgggtaatttataaagaaaggagttttaattgacttacagttccacatagctggggaggcctcaggaaacttataatcatggcagaaggtaaag<br>gagaagcaagcacctccttcacaaggcagcaggagagagagagaacaaggtgggaagtgccacactttaaaccatcagatctcgtgagaactcactgtca<br>tgaaaatagcagagggaaacccgcccccatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NCRNA00189:NR:027072:3/4
0	chr21	32092888	32093121	1000510	0	-	Yb8NBC208;10869; RIP_Alu_chr21_031_01	ATCACTAAAGAGACTGTTGGCGTTT	CCATGGAATGACATCTAGGTTGTT	SINE	Alu	Yb9	cctcctgagtagctgggactataggcatgtgccaccacattctgctaatttattttattttattttgtagagacagggtctcattatgttgcccaggcta<br>gtctggaactcatgcccttaagtaatcctcctgccttagcctcccaaagtggtgaagttacaggtgtgagccactgtgctcaggtaccaaattttagaag<br>cttttttcagattgtctaagattcaatcctcactgagcatcttaaatatagattttcaactctcatgggcaagaaaataccatatttaggttgagttgag<br>actaattttgtaattgagtcccatcaaaggtttattttcaaaatattcagtttaatctaggcaaaactgcttacccaatggttatttt<font color="green"><u>AAAAGATGACCT<br></u></font><font color="red">TCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGG<br>GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCG<br>AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATGACCT</u></font>gtttgacttaatgtggcctatttgcttgtgctgtataaaaacgccaacagtctc<br>tttagtgatttggaaacttgaacactcataagattttcatatttgaacatatactctaagacgataactttcaaaagaacttaaaagttatttctcaact<br>taaaaagttattttgttacacaaatatgttagtttattgaagaatgtcaagctggttttctttacacagttgtcctcctaaggataattaaaatgctatc<br>atggcgttccagtttgtactcctactacaatacctggcatttaggtgcaagtaaaacttacagcgcatatgtaaattgtgaatactctgaaggtgttttt<br>attttatagtgtttgatagcacattttaaaatct	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	357	111	NA	intergenic
0	chr21	40344317	40344628	1000511	0	+	19513;Yb8JW664; RIP_Alu_chr21_039_01	CACTGAATTGTGGCATTAGGAA	CTCTCCTGCCTCTCTACTTTGCT	SINE	Alu	Yb9	ctgactgaatctttggatgcccccgctccatccccatcttggcacattggatacacaccagtcccgtcattgagtactgtctctcttatgagacggaagg<br>caccttgagcacagagcattggcctggtcatcttcccacccctaagagtggatgcttcacaagtattagcaagataaatatctatgattttaaattccca<br>tcgtaccgccaacccatcttgtatgcatttctaaaaatgtattatcttgacattagaataccttttagggaagcacctgttgctgttttccaaaatatct<br>caatacagctgcttggggtggaaattaagaatatgaggatatggatcagtgtaaaagaaatcactgaattgtggcattaggaattatctt<font color="green"><u>AAGAATTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGA</u></font>gaaaggggcccggcacagtggctcatgcctgtaaacccagcatgttgaaaggcctaggtgggaggatcacttgagccc<br>agaagttcaagatcagcgtgggcaacatgacaaaaccccatttatacaaaaaatacaaaaattagctgggctcggtggtatgcacctgtggtcccagcta<br>cttgggaggatgaggtgggaggatcacgtgagccccaggagttcagggctgcagtgagccatgatcacaccactgcactccaacctgggcaacagagtga<br>gaccccatctcaaaaaatgaaaccaaacaaacaaacaaaaacagaatttgaaaaaaggaaaagagcaaagtagagaggcaggagagacaagggggcagag<br>agctgaaaaccg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	725	403	NA	intergenic
0	chr21	42402897	42403203	1000512	0	+	pAlu21-41323632;Ya5NBC243;528; RIP_Alu_chr21_041_01	CCATGATTCGTCATTCACCA	AGGAGACCTGCCAATGAATG	SINE	Alu	Ya5	ttgcatctccctaatgattagtgatactgagcattttttcacatgattcttgcccacgttgtgtcttcttttgagaagtgtctgttcatgtcctttgccc<br>attccaaaatgagattgtttgttttctgcttgttgacatgcttgagttccttatagattctggatattggacttttgttggatgcatagtttggaaatat<br>tttctcccatttgataggttgtctgtttactcttggttaatcctcctacatcacacgcctaccttcaaaagtgttctgaattcagggcctccatgggatt<br>ctactgagcacatagacagctgcagagttgagggtcttcctttccatgattcgtcattcaccatcactctacacagttttgtcttt<font color="green"><u>AGAAAATACCTAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGAAAATACCTAGA</u></font>aagctgtcattcattggcaggtctcctccgattctctttctggttgaaagagaatacattttttattctcttactttcc<br>ttataatagcaacttcagaggaagagataaaaacacatacgttccacctctcattctaaactggaagccactttctgaaggaatcaacttcccaaagaag<br>aatttcatttagttaattattcaaaagattcaactaaaataagaaaattccattcaatgacattttcttgggtatcactttgttcaaagtacagtgcttg<br>actaactcaggaatttacaagacagtaggatttggttcttgcccccagataatttatgttctgatagaaataacagacatttatcaacatgttgtaactg<br>tacattt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	406	86	NA	intergenic
0	chr22	18283916	18284218	1000513	0	-	19250; RIP_Alu_chr22_016_03	NA	NA	SINE	Alu	Ya5	gcgcgattttggctcactgcaagctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacgggtacccaccaccccac<br>ccagctaatttttgtgtttttagtagagacggggtttcaccatgttggccaggctggtctccaactcctgacttcaggtgatccgcccgcctcagcctcc<br>caaagtgctgggattacaggcctgagccaccgcgcccagcccgcatctcctgctttctttacccgcccttgctcgagtgagaagaggtagtgagctgctt<br>tctcctctgggttcccggactgcagctactagctttttggatttagaattccagcaagttccagggggaaatgaaataaat<font color="green"><u>AGAAAAAGGAAACTCAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAAAAGGAAACTCAGGA</u></font>tgccttgtgaatcacacagtgccccaccactgacactcataaccctttgaaggtgggctcatcagctcatcacttccc<br>ctttcccagaccattatgctgcgtaaattcaagacttctcgggttctgcccaccacgtgggggctgctgcttgaaggggacgttccccactgcagggagt<br>ctcttgtggactttaggccctgttctcgccacgcccgtgaggacgacggcaatgccagaattaggtttcttttctgtttctgctcttgtgtcattcttag<br>agcacttagtaatattcgttaattggagggaaaatcacccttttgagatctggagcctcatatgtaaaacctggttgcccttgcccctctgtgcctgcat<br>ccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MICAL3:NM:015241:29/32	
0	chr22	33295773	33296076	1000514	0	+	pAlu22-31620226;Yb7-Yb8NBC125;1089; RIP_Alu_chr22_031_01	AGCCAGAAACCCTGAACAAG	AAAGGCCCCAGAAGTATACCA	SINE	Alu	Yb8	taggagaagaaatccttttgtaagcaggagtgggactggggaacggaggcgttaatcaagtgagactttcatacaactgagaaaaggttaacttccccct<br>aaagaaggagcgtgtgtgcagggaatgaggggttggtccatgatggaggttatgggcccaccagtggcctctatatggctttatctagagcatttctgaa<br>ttcatccacttaaaatttaattaggaaaaagggttattctgcttaaaattaaattagcttggaaacaccacatataataaggcctggagttaaaatgctg<br>ggttcttgtcctggccctgaaactcactagccagaaaccctgaacaagtcaatttccctcttttgagccttcgttcttttacagtt<font color="green"><u>AAAACAAGGAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATATAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAACAAGGAAGTC</u></font>agatggtatacttctggggcctttattagctaaaatattctgagagagcgtgaccttctagtactgtctcccatggaactgt<br>cctggtgaaacccagagatcagctcatgaagatggacttgaggcaagagagagctgaaatgaaattgggcttgagttgccactcagcccagcaccatctt<br>ttcagatccttgttctgaagcagcagatcctcttcatcttttcagccctgaaggaatcccttacatccgggtcactgcaaagttccgggcaaatttcctg<br>acaaacttctgttcattttttaaaacccattgtaaatgttatggtcatttgttcattcaataaacatttattgaataaatactctgtgccaggtgttctt<br>ctaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:SYN3:NM:001135774:4/14
0	chr22	37127090	37127247	1000515	0	-	20709; RIP_Alu_chr22_035_01	NA	NA	SINE	Alu	Y?	ttgaggtgtcttccagccatccctgtgaggtgtcaagaaggctgttggagaagccagtctaggatgcagaagccagctgtactggagatagaaatcaggg<br>agttggcagggcacagtggctcatgcctgtaatcccagcagtttgagaggccgaggcggtcggatcatttgaggttaggagttcaaaaccagcctggcca<br>acatggtgaaaccccatctctactaacaatacaaaaattagccgggcatggtggcgcatgcctgtagtcctactacttggagggctgaggcaggagaatc<br>acttgaacccgggaggcagaggtggcagtgacctgagattgcgccattgcactccagtttgggagacaagaatgaaactctgtc<font color="green"><u>AAAAAAACAAAAAACA<br></u></font><font color="red">CACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAG<br>CCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAAAAAAAATAA</font><font color="green"><u>AAAAAAACAAAAAACA</u></font>aacaaaaaaaacccacaaacaaacaa<br>aaaaacagaaatctgggagttattgatgtgtagccagcatgcgtgaggatgttcccatttgtccccaaggatctagacatgacacagggaggaggaggtg<br>aaggccctgtaatataatagagtcaggaatattttgtaaagagcaccatcaaagccatattaataggaggactgtgtgtgtttctcatgtcgatcaagct<br>gtgctgtcttggaaaatcaaatactttcgtgtttaccttgaagtaaatctaaagaaaccagccagtgccactgctgaagttgagacaccaagttgaaccc<br>aagcaccttccatgttttcccagcaacgtccctcggcctcaatttactcgtccataaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr22	42140492	42140800	1000516	0	-	14672; RIP_Alu_chr22_040_01	NA	NA	SINE	Alu	Ya5	cagccaaagtcctctttgccatacagcagagtatcagaaatcaagtgttgcctctagaacttcacccattgtctgaatcccttccacccctaccttccat<br>gctattacttcatacctcagagggcccctcacctgcaggcacttctaaatccctccagagtgctgaggaggaactttcccctttgaagaatggccttctc<br>tgaatctctactggaggcatggccctgaggtgggaaggagagacaggaacctagtgatcaagtatatgctgtgtctcagtctatgcttggatgactgtag<br>acctcttcttctcacactgcagtctgacattcccatacacctaactttccaagagatcttggctatatccttgcaaatagctccttta<font color="green"><u>AAAAAAATCATA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGAGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAAATCATA</u></font>gcaaagctgggcatggtggctcacgcttgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggag<br>atcgtagccatcctggctaacatagtgaaaccccgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggcacctgtagtcccagctact<br>agggaggctgaggcaggagaattgcttgaaccccggaggcgaaggttgcagtgagccaaaatcgcaccactgcactccagcctgggcaacagagcaagac<br>tccgtctcagaataaaaaaaaatggtagcaggggcccagcgcagtggatcatgcctgtaatcccagaactttaggaggccgaggtggaggtcaggagttc<br>gagaccagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MEI1:NM:152513:12/31	
0	chr2	5487783	5488035	1000517	0	-	238888; RIP_Alu_chr2_005_01	NA	NA	SINE	Alu	Ya4	tgattctccatggccttgacaggtgcatggcctctgccctgggcagtgtggagtcagttcccttccctcactctaggattcccctacttttccaatcact<br>tccaatcctgcctttcaggtgtttagcagtgtacagagggctgggtgggatggcagaacccgggcactcctgttgacgatgcatccttcacttcctccgt<br>ctccttccctgtctcctccttttccattactcaagccagctgacctcagaacttcagaaaatgaatgtaaatgtatattgttctcaatatttctactttt<br>tctgttgtggaaacttcctttgtatcataatattctttttctttgattctccaaatgtagatccttactattttaaaagaagcatt<font color="green"><u>AGAAATTCAGAAGA<br></u></font><font color="red">CACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTA<br>GTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCG<br>ACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTCAGAAGA</u></font>aactaagacttttttgtttagcaagatttgact<br>ttcagcctattgtccactatagaattagtagatcaaatttaatatacaaagttgcataataacttctttgctctggaatgtttctgtccttttctagtga<br>cacagatgtcctgatccgtttgtctggggaactgtagtgtaacatgattttggaaaaaacaggtcatataacatttaaatatcaatatatttttatgtta<br>tttatatagtatgtatatattatatataatacatatgaaataagtataaacatatattatatatatttatctttttctatctcaaaattttaaattcaat<br>gttattttaggataatatatatgtttatatattatatatcttaggtatttaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	21572794	21573083	1000518	0	+	Yc1RG72;665; RIP_Alu_chr2_021_01	GTAATCTATGGAGGGGCCATTT	TTTGGGGAACTTAACCTGTTAGC	SINE	Alu	Yc1	ctacaaaacggctgctgttttccctctaccctctgtccaaaatttcctgagaatctcccttgtgcctattctatccagacatgtacaataaagggaactc<br>tgggaagtgtagttcagcctacccaagtagatacatcacaaagccattttgccttcttttttttctaagcagcagagttcttattctgataacattcact<br>gactctgctgtaggactagatataccagcacaaaagtaggctggtttgtgagagatcattcagtcaaggcattgtacataattaatcttagtagtttgag<br>ggcagaaagagtcagtcatcatttgcacaaatgaagaccttgtaatctatggaggggccatttcaattgctattctaatcacagt<font color="green"><u>AAGAATAAAGCAGAA<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATCGCGCCACGGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAAAG<br>CAGAA</u></font>attatgtgacttgtgccatttgatttggctaacaggttaagttccccaaatcagggcacataaccacttaattttttccatagaaaagtgaatgg<br>acatttttgatgacttggatacctgcttttgaatcaaaacacatagattttaagtatttgtctcaaatattctttcctcagaagtcattgaccatgcctt<br>ttcttgaagcctagttatacagaactaaagaattttcataggcataaacaaggaagaatttaaattaatgtgtaaaattgggtatcttaacttaggtact<br>ccactgcagtatgtaaatatcaaggtagcaaatatataactggatagtgttaggtatgagactgcaaagcaaaatgatgtatgtgctact	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	61	414	109	NA	intergenic
0	chr2	35034455	35034682	1000519	0	-	13032; RIP_Alu_chr2_034_01	NA	NA	SINE	Alu	Ya5a2	aagagcttcaaatggcctaacaacatgttttcctcctgactttgctcccatggatcacgtctcttgtcaagcaaccttccttatcatgggaccagcaccg<br>tgcttgcttatccctgaggagcaggtttcaattccttcccagcctgcagagctattcaaacaagctaatcacatccttccctgggattcaggggtcactt<br>tgccacagcttctacttgtccactgttcctaaatgcaatatccatgtggttcttcatggcatgcactgcccttccccccagactgtgagtggatgtgatt<br>aataattgctatctcatcttcctagtgtctagtgtagtgtgtgtgccattctctcatagccagagggtgtgaatccctctctcatc<font color="green"><u>AAAAGGGTAAGTTA<br></u></font><font color="red">TCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGG<br>GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCC<br>GTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGGTAAGTTA</u></font>ttagaggtgattaaaacaatggacaattttttttttttttgagactgagtttcgctct<br>tgttatccaggctggagtgcactggcacaatctcagctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgg<br>gattacaggcatgtgccaccacgcccagctaatttttgtatttttagttgagacagggtttcaccatattggccaggctggtctcaaactcctgacctca<br>ggtgatcttcccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcacctggcaacaatgaataattttttaatggagaaaaaaaaagg<br>aataaaactacgataatgcaagtaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	38851434	38851728	1000520	0	-	Yd6JX90;20509; RIP_Alu_chr2_038_02	TATTTGAAAACTGACCAGCCAAT	CATCATCCAGGAATAAGACCAAA	SINE	Alu	Yd8	ccgaggacaagaagtaatttggagatagccagttaaacgtttaccagcacacactgaatagaggcatgtgctgggacaaagagccgtgtacttagagact<br>tcaggatgaaaatgcaaatggacaaaaccatcaactccatcagtgggggcagcagaataccatgagtggcagagaaaggaacattttcattcaggggtca<br>tcatccaggaataagaccaaactagtccttccacagcagagaccagcaaagatcctggataccaactggatctgaagcccctccccctactgccccagaa<br>tgctgcaatccagtatcactgagctgccatcctgaggatgccactggacatctgtccccatgactcagtcatccagaagactgttt<font color="green"><u>AAAAGCCGAGACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>CCGAGACTA</u></font>tgagacttttgattggctggtcagttttcaaatagttggaatctagaatccagttctcatcttagattcacttttccaccttgacttttac<br>tcccccttagcgaggcacacattgtcttctggtgctcacaggccatagcagttaaagtggtagacatctatttgtttctgtctttttctccatagtgacc<br>agtcctgatggactattcacaatcgctcctccttggcttatcaggcctcatgcaaatcacatgctgtcccaaatgaccagtgaactgcctccgaaggaac<br>caaagtgacaggggctgtggagctgaggacctctctctaatccctccaggctgaaaaattaatggcccactttttctgatggtaaaataataatt	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	545	236	NA	intergenic
0	chr2	40978151	40978471	1000521	0	-	9004; RIP_Alu_chr2_040_01	NA	NA	SINE	Alu	Yb8	aggatactgtatttggaatcaaaatcctgggtgagaatttttgctttaccactaataataaaacctaagggagtgattgaaccaattcagcctgtatttc<br>ctatctgtaagagggaaaaataatgccttccctatgttactttcacagttgttgggtagatgtaacttagggccatggaagagccctaactctaaatcag<br>aatatctaagttccattcctgactctatcactgatgcccttcataaccttaattacaacacttttctgatcttttcctcatttggcttacttctaaatga<br>aaggctaagtcacatgtgtcttattgatattagtactttctagttagattctaaagtaatttcaaacttacagaaataatgtgaatagc<font color="green"><u>AAAAATAATTC<br></u></font><font color="red">CCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGCGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCGGGGTGACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAATTC</u></font>tcatactttatgcagattcaccattttttaacattttgtcacaattgttttatcattcttccttgcat<br>atatatatacacacacattgtgatatgtatatatgatttacatagaaatatatatttgagaacattacatatatcatttccatttatacttcattatgta<br>tttcctaaggtataaaacttacactaacttcactgaagtattcaggtttttaatattttaactataagcaacacatgtgaattatactgtgaaatctaaa<br>gcactactaaaattataaattgtttttcttaagaaactagcccaaaaatattttataaaagagctagctatttttcaaataaaagattgaacctacattt<br>ttatagatttggaaacattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	44783602	44783908	1000522	0	-	Yb8JW684;3922; RIP_Alu_chr2_044_01	GGTAGCATCTTCATTGCAAAGTG	CCACTGTGCCTAGCGGATTA	SINE	Alu	Yb8	agtggacatttctctgacaaataatacttggaaaccacattatcattaatgatgaatgaatcctatgtctagaaaagttaataaacaaggcatttcctca<br>gtgaaaagagttaaagcaaaccacataggtgaaagtaaaaaagataaaacttttgcatgctgttgcattccagcagggagtgggtagttcctgtgcattt<br>tctccctgaaataaacttacatcatcctcacttgtatcattttgtaaattttttttgtagagacggggtctcattatcttgccaggctggtctcaaattt<br>ctgggttcaagggatcctcctgcttcggcctcccaaagtgctaggattacaggcgtgagccactgtgcctagcggattaatccttt<font color="green"><u>AAAAAAAAAAAAGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAAAAAAAGA</u></font>aagaaaaattggctggacacggtggctcatgcctgtaatcccagcactttgagaggccgaggcaggtggatcaccagag<br>gtcaggagttcaagaacagcctggacaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggcagccacctgtaatcccag<br>ctgcttgggaggctgaggcaggagaatcacttgaacctgggaggcggaagttgcagtgagctgagatggcgccactgcactccagcctgggtgacagagc<br>aagactccatctcaaaataagtaaataaataaaaataaaaaataaaaaaaattgtaggtatttttaaatagcctttcactttgcaatgaagatgctacct<br>ataacac	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	740	420	NA	intron:C2orf34:NM:024766:3/11
0	chr2	54693495	54693742	1000523	0	+	13482; RIP_Alu_chr2_054_01	NA	NA	SINE	Alu	Yc1	actgagtggttgtttgaagaagctttcaggattaattgtgctttgacatataaaaataagatgttatcaagattgctttaaaactgacccttgtttatag<br>gagtcatacgtccattcttaagaaactctcaactgtgacagtaaacatctgagtgatttttagaaccattttaatatctctgctctagaatcgagaatgc<br>cctgttagttctgatttttaatatacaaatttgaagccactagttaggcagtaaaatatgtattagaacataactatagatttttacccaatagatcaat<br>tagtatgaaatttaggatgatatataagtacaacagaatttattcctttgaggtatgtattttcaaagtgtaatttgtgtaatt<font color="green"><u>AAGTATGTTTATTCTT<br></u></font><font color="red">CGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGG<br>AGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCG<br>TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTATGTTTATTCTT</u></font>agaaagttcatgagcctattaacattggttatcttg<br>ggtaatggaattgcagaagatttcatctctgtatatttttttctccatattttttaagttttaggaaataacaaattcttgttctttatcaaaaatatcc<br>taacacttctgaccaaacctcattttagctggatacaaactaatcaaataatttaccagctaaatatactttctgctgttcaatttttttctaccaaact<br>tacggaaaagcagtattaataatgaagatataaagaacactgaaatttttgaaagatcttttcattccttgtttaaatgttcatttttgttacagccttg<br>gcagttcattacttatgcagagtgtgggaaaagctctaagaactggcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SPTBN1:NM:003128:1/36	
0	chr2	57342744	57343056	1000524	0	-	18879; RIP_Alu_chr2_057_01	NA	NA	SINE	Alu	Yb8	tttctaccaacagcctacatataacaattaaagtattctctgagacaataagtttttctcctgtgctcctcacttcctactgcaccctcactagaaaccc<br>tttgaatgcccataaactaactaacattctgttcaagactccccaggcacttctataatgtttcttaaacttctttcagcctctacccattacctaattt<br>taaagccacttccacatattttcgtatgtgctatagaagtaccccactttctagtactgatatctgtactagcttcctattgctgctgtaacaaactgcc<br>acataaaaagctgccaggaagtaccccactttctagtactaatgtctgtactagtttcctattgctgctgcaaaaaactgccacat<font color="green"><u>AAAAAGCTACTAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTACTAGC</u></font>cccgggagaggggctgatgtatgcaaagtgcagagaaagagagaaagagatagatagagagagacagagagag<br>agagagagagacattgcctggtgttcaaatcataaggtggatcttagcactactgcaaaactagttatgaggctttaaaaaagaatgtacaatgagtcat<br>gtgctcttataatttaaaaattcataattagaggcatttgtgattgtgtgttgcaaaggaatccctcaattagtcttatgtacacctcagtccatctcat<br>aaaaacattagggaaacatttctaccctactaaatgattctataaactgaaaactgaaagttagtttttatatttttttaatattttatagatctttaaa<br>aagttaagtgtgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	65807520	65807817	1000525	0	-	pAlu2-65765124;18653; RIP_Alu_chr2_065_01	NA	NA	SINE	Alu	Ye5	gctttcccatctcttctcctcatgaaagttcccaatatgtatttcaagtggcacagggctcttgagaggtcaacgagttgcctacagcattggtcaaatg<br>ccaaatcaaatatgcatccttcttctgaaactcccctgccctacctcagtcccctgtccctcaccccagcttcctctcgggctctgctttctggtaaacc<br>caggcggctgagctcagattatctgaggtggcacattttaatggtcggttcttattgctcttcctttcccttttctctattttctaattattcttacaat<br>aaacacatcttaatctcacaattttaaaaccttttttttccccctcaagcctataatcacatctccaaggctagtttacctatgttat<font color="green"><u>AAAAGTAACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAGTAACATG</u></font>atattaggattaggggaaagtgcaggcatgtgacattaaacattgctagcaaaacacatacccaacacaggtatgggtagtggggagcag<br>gaagtcggagagagggagacagttattcttcctgattgtttctggatgttctacagccagctctgaggctgcttctcagaagaggaaagaatcctgtgga<br>gaaagaaaaggaggcagggaggcagggatggagggggagaaggaggatgggcatcctgtcttcctttgttctccagcctggttccctgagacagtgggga<br>ggagggccccttctgctccaggccttttgttcagcagaggtgctaactggttggcaggcccaggaaaaaggcagactcagaggggagcggagaaggct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	79057659	79057983	1000526	0	-	9831; RIP_Alu_chr2_078_01	NA	NA	SINE	Alu	Ya5	atgatggactgtgtagatatttgcattgtggaaaatgaacttaaggaaatcaccaataaaaatacaaaagatctgataggattgaaattgtaatcaatgt<br>cggtaattaattcaccataaaggaaataccaggagagctaaaatcaattaaagagatgtctaccttattgataaatcagagaaatcaaaattatatcaac<br>cctgaaataccacttcaaactcagagtgggaaaaaaatgtattgtcaactattgagaggtagtagagaaatggaagttctcttgttatgctagtgggatg<br>ttaatgagtgtgttcaatttataaggaatgtggcatttcctagacaatgaagtccagtgttgtcaaatctatcctacatgtgtaacctt<font color="green"><u>AAGAAACTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACTCAT</u></font>acactgacgcatggagatattcacgagagtgttcattaaggatttgtttgttctagcaaagttg<br>aaatacgtcttgtccaccaaatgaaaagaagaatgtgcctgtccttgaatatgacacagtttttcctgaagtaactttaaataaatcttgttaaacatta<br>taaatatgaaaagtaggcaacaaaaggagacatatagcacaatcccaattactaaagtatgagtattcaatacagagtgtgggtctataagaaaactggt<br>gatgttagaaatggacctgcaggtgcaggataaatgagaaacactgataaaataatgatagtgacttattaaataaggataatcattagcacaattctca<br>gtctctggaatccttaagcaaagga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	84758454	84758733	1000527	0	-	238297; RIP_Alu_chr2_084_01	NA	NA	SINE	Alu	Yc1	aaactatgaaaacattttcacatatgaatcaagaattatgttttaaaatcaccaaataacccactttccatcagtttccacttaagatctacaagttctt<br>caccaaaaacttacaaagaactatacaagcgagtaaagtagtggtaggaatgacaatattattaagggttttttttaattgaagggctttaaattacatt<br>atatgttaattcttccatcttaaaaaaatgaattctctcatgttggaaaaatcctctttttttaccccaattctccttcgtctaccatctcttctccttt<br>tgacatcccaaaattaatgtatccgaacccaaacatgtatttttccctgatgattctgctccattcagtcttctatgtctcagttgt<font color="green"><u>AAAAGGAAAATAA<br></u></font><font color="red">GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC<br>CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAAAATAAAAAATAAAAAAA</font><font color="green"><u>AAAAGGAAAATAA</u></font>atcttga<br>ggcccccaaatcactaaacgaaaggtaaatgtcaagctgggaactgctaatggcaaacctgcctcccattctattcaaagtgacccctgtgctcactggg<br>ataaatgcatatctcattgcctcatttggaaaggctaatcagaaactcaaaggaatgtctctcatctacctatgacctggaagccccctcctcgctttga<br>gtttttccatcttggccttgagttttcccacttctccagactgaacccatgtacatcttacacatattaattgatgtctcgtgtcttcctaaaatgtata<br>aagccaagctgtgcccgtactaccttgggcacatgtcatcaggacctcctgaggctgtgtcatgggcgtgcctccatgat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DNAH6:NM:001370:4/77	
0	chr2	103322497	103322818	1000528	0	+	2565; RIP_Alu_chr2_102_01	NA	NA	SINE	Alu	Yb8	atttccctttgtagagatctccattccattctggaagggatttaattatttcaagttataatagttatagcccctcacaaagtaattttggaatcagaaa<br>ttaaaattctgatttttaacatgaagttttgctatacaatttttaatctttaatatacaataagtgccatttgtatagtttaagtaagattttatatttc<br>ttttacaggcttccacttcaacctcccgatatttatccttacctaaaaatacgaagcttccagaaaagctacaaaagaggaggactatttctattgcagg<br>tagtgaatatagttggagcagaaaaattttaaatttatttgccaatgtttataaactagacaaattttcctattatttttcttcatt<font color="green"><u>AAGAATGAGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAGAAAAAAAAAAA</font><font color="green"><u>AAGAATGAGTTCC</u></font>aatgagaacacttggacacaggaaggggaacatcacacgccagggcctgttgtggggtcggggga<br>gtggggagggatagcattaggagatatacctaatgtaaatggcgagttcatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgc<br>acattgtgcacatgtaccctaaaacttaaagtataataataatttaaaaaaaagaatgagttcaagagtttgcaaatctaaaataataactgggtgaatt<br>ttaattcgcattgcaaccttttggaatggcattctgtgcagattctaaagaatccaatcagttattttccagcaaatattgtcatcatggggcccaaggg<br>caggtaaacaaaaagttgtaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SLC9A2:NM:003048:11/12	
0	chr2	117187127	117187128	1000529	0	+	16722; RIP_Alu_chr2_116_01	NA	NA	SINE	Alu	Yb8	gtagaaaaggtataaagtcattaatatcagataaataaggacagaaaaactataacccaaatatgacaagtgaagagtggaaatccacaaagcatgagag<br>agagtactaagtcagctatcatagtaattaattaaagacaaaaatcctaaccagctggtcaaatgagtccaactactttctgtccacaatccctaatacc<br>caatggcaatctaaaaaccaaaagctgtaccataaatgatgtgaactacttgcttggggtcaggtttagttcacacacagattaatgagaaagaaggaga<br>gagcttcaggaaggtctagacaggataagaaatggagtggggaggtgggagagaagccatttcattcatggatgaaatttacttatgt<font color="green"><u>AAAGAAATTATT<br></u></font><font color="red">CCTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAATAAAAATAAAAATAAAAATAAAA</font><font color="green"><u>AAAG<br>AAATTATT</u></font>cttattttagctgctagagggtgtcctaagctttgatgcgagcctcatactaatagaccttgagtgaacttaacaaaaccattcttcatttt<br>ttacacatagcatttgattatcccttctacttaaacaaactcatatcagcaatctaaaccaatcactaagaatcataggctatttgaaggaaacaaatat<br>tgttaaagaaaaaaaaattaagaaatcagccaaggtgccaagaaaagatgctaaaaggcaatccagggaataaaggagattttaataaaatatatttgct<br>agttatgagaaatttgagagattattgaaaccagaaaacaactataaggattaagaaaatgaaacaatcagaaagaattatggacaaattgataaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	118906145	118906281	1000530	0	+	17954; RIP_Alu_chr2_118_01	NA	NA	SINE	Alu	Ya5/8	attcaacccagtacacttacaggtctctggaatatggatctattactttttgtagggactcatatctctgctccctaactcaggttttacaagaataaag<br>ttttacagaagtacatcccccagtctgaaatctggaggagttcagaatttgagtaactgggtctgtccctggtattgctataattaggttacctttattc<br>ctttatgaatcattaactttgaaaactgctggttctatctgtgacaaccagtgatacatcatctttaaccagtctgtaccaccataaaaaaaaatgttgc<br>ttaagtcctaatttattgctccacgacacaaatggtgcatctcttacaaactcagccaattttaagggtgatttctgggctgctt<font color="green"><u>AAAAAGGCTTCTACT<br></u></font><font color="red">TGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGCTTCTACT</u></font>gccagcttttggaaaatcttgctttagagattattattttctgtttca<br>ggacaaatccacgaatttggcctattcatgttagctatagtgagatgatgcctctcttgtccataaaacttgaatacccgggtgtcataagtgatttttc<br>tgaagttaatttttcccatactttgagttatcagtttctgacgtgctggtgtgcatttcagttgaggttttattacattgtgttggcagcacattatgtt<br>ttttacacatggatttgattgagaaatgaaactggaataagaatgaggtagcagcagcatctgctggaagactcaactattgctgttgtcaatcagcctg<br>attgattaaatatggtgatacacatctttattaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	134544292	134544606	1000531	0	+	7365; RIP_Alu_chr2_134_02	NA	NA	SINE	Alu	Ya5	gatagtgtccttgtggggcaaggatcaccattccaatcaataagtatcaaccttggctacattttgaaatcagatgaggagcgaggggagacatactgcc<br>attccacctccaagaaattctgatataacaggtttaggctgaggcctggacaggaaaactttaaggactgcccaatgcttctcaaatccagccacaatta<br>aactctgctgatctcaatagtactgaccgtataacaggggttctgaaaatgcatgtagcctcattacatgctgctgatttgagcctttggctccattttg<br>acattgtgtgacacataataggtactcagtctatatgtgttaactggcatcctagcaaatgtttgattaatgaataaattaat<font color="green"><u>AAATAATTGATGATTTA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAATAATTGATGATTTA</u></font>actaaagtatagaggagtttagaggtggcagaggtcagcatggattggtttagataggcagacataag<br>ctgagcctgaggtcaacttctccttgttatagaatgttctggaattctggaacatctaggctggaatgggccatagggagcgtccagttcaatggttcat<br>aatattttcctgctcacagaccctttagaatttgatgaaagttttgaacactcatcccctcccctccaaccaaaaagaaaaccatagttatgtattcaat<br>ttgagcaggttcagaaggctcctggacaatggtttcccaagctaaattcctaaggtccagctcaacatgtcccttgataggaaatgcaactgatgcccag<br>agacagtgagtgatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	142351004	142351323	1000532	0	+	10306; RIP_Alu_chr2_142_01	NA	NA	SINE	Alu	Yb8	tctgccaaaatttgggaaataagaaaatttggctattgtacaaacaaaactctagagaagagacaacataacaggactagataatgatatttctgcaaat<br>ggataattagggatttcagagggtgaagaatatttacattccagggaaggcatgaaacctttaagggcttttacaaaaacaaacaaagcatagaaaaaac<br>ctggacccatgaaagataaacagcttcagtgtatttctaccaggaaaacatttcatttcattactcaaaagtaccccctcgacatatatatgtatgaatg<br>aatgatactactttgttgttgttagcaagaaatgtgtttattcttctagtttttatatctgtcacaagtgaggtatactgaatactttttttctt<font color="green"><u>AAGAA<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAA</u></font>acatttctgattttcttaaatgtggaaatagaagaaaacagtcacttggtgagagcagcaggaggcagctaaatg<br>tctaggcagatagggacgtgtccctagtgaaaccctacctccaaagcctgtcatcagctgtcattagcttgaaagccaagctaaaagttacgtccttgga<br>ccagattgagaactcatcttcctgcttggcatgctttcccctgattgatccccacccttcaccttttttatatttatataccctttcctaattggtcttc<br>tactctgtcatgcccacctttgagtggtgtctttgctttgaccctttttgcctactcacaagccaatcagcatgcactctgagtccataagaggccccag<br>acctagccagatgggggact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LRP1B:NM:018557:2/91	
0	chr2	145346769	145346770	1000533	0	+	238613;pAlu2-145369095;1104685265294; RIP_Alu_chr2_145_01	NA;NA	NA;NA	SINE	Alu	Yb8	atttagcatgatatgtgcattgcttgtattgattgctcaagagttactcaattcagaaaattaaaaatatacaccctatagtatacagtatatactacat<br>agatgctgtgtatactaaagatactgggtatccgtagtatgtagtatatgtagtatacacagtatctatgtagtatacactatgtagtatatactacata<br>tacacagtgtctatgtacggtatacacacactacacacactacatagatgcatattgggcaatatggaattttaaaacaagaaacaaaaagatagtattt<br>ctactttgaggaaaaccaacatatttgtgtaaaagaaataaaactctttaaaattagctgttttagatttgacatttattcatca<font color="green"><u>AATAAATATTTACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAACAAAA<br>AAACAAAACA</font><font color="green"><u>AATAAATATTTACAA</u></font>agagatgaagaaggcaccatgatgccctccgagagctgttaatgtaatgggtttaagacaaccacaatagaatga<br>agaactttatttttcacaagacagccaaagaatgctgaaatgaaaatgacaaaaacatctaacgttgaagagtccttcttacgggccaggtgatatatgg<br>tctattttaggtgtgttgcctcccgtaatttgcacaatgacttcataaggcaggtactcttacttcctctgccttgtttcaacctggccttcccagatga<br>agcaaccaggagcgataagttgtagtaagttgctggagggcacacagctagcacatggcagtggcgggcatgtgaatgggggcagtatgaccgtacagct<br>gaagatgcca	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	150764253	150764254	1000534	0	+	13570; RIP_Alu_chr2_150_02	NA	NA	SINE	Alu	Yb8	attttaacaaaataagaaagattcttagcattttacaactcagaagtcctctgtacactggaattacagctgaatagtttgcagagatgagaaagctgac<br>actaatgcaataaattcagtagatttcaggaaaactacttggtgcacacagtattataatgattgaatttttcaaagttttgccttaactgtgtgatgaa<br>agaatttaataaagggaaggctgaaagtaacatggctttttaaaatgtagtttcaattgtattcatttctaggacattgattgctatgtatgtactgaaa<br>ggaaattcctcatgcctcatgagaaaataaattttgtgtgcaaccaatcttggccaacatttatttagaaatgtctgtagcttagag<font color="green"><u>AAGAACTTACATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTTACATT</u></font>atttttagatacaaataattaaagaattagcttaatttcaattatttttaatgcagccatgctttcctaa<br>tgagcagatttctttaaaaaaatcaagcaatttaggaaatcctacaggatagcaaatatttgctaatttaaatgtgaataacatctgtagttatttggaa<br>tataagggagataataaacagcgcttccaggaaaacccagagtacaactactattcaaacataaaactatttttttaactaagctgtatgccagttggtg<br>cagcagatttggaatgcaaagtttgcttgcatttagcttaaaaatttgtttttgagtcaattttaaaattgccattttaaaattaatatatactcaaata<br>agctttttcatactcat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	152617302	152617603	1000535	0	-	pAlu2-152581221;17093; RIP_Alu_chr2_152_01	NA	NA	SINE	Alu	Ya5	tcttcacatggcattctcctctctgtctctactcctcctacaaggacaccagtcatattggattaagaacccgtgctgctctaggatgacctcattttaa<br>ctcactgtatctacggtgaccctatttccaaatgaggtcacattctgagaccctggagattaggacttcaacatatcttttagggggacacaaacccgta<br>acacccttaggtccagtttgtttcaaaggattttcaaagtttcacaggattcatctcctagcttattccacttcctctttgaagcctcctgacttactaa<br>aaaataatttttaaaaaatgctgtagcaagatttgtgggattatacatattgtgggatacttcaaatgttttaaccatctataacgc<font color="green"><u>AAAAATAGAGTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATAGAGTGC</u></font>aacacaactatgttattcacaagataattacagaatttactttgaaaatattaatttacagtgtactcttggaagtaggatccaa<br>gttttcaactccctaagaaaagacaatttattttaatcctgtgggtttatctcaggcagcaatcgtgtgcctcattagtcatgacttcagactcctacat<br>ttgaggcctgttgcgatagtgaggctgggccaagggaccggctccccacagataaccctgctcgcacttaggaagaagccatttttgaattgacatgtgc<br>cccattccttcccttctacctgctgagccaacacacgctgcctttcctctgacatcactctgttcatgtcctcatgctcctgactcagagcagtgcctgg<br>ct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	160855864	160856174	1000536	0	-	12521;pAlu2-160819787; RIP_Alu_chr2_160_01	NA	NA	SINE	Alu	Ya5	gtaaatcccactaggaaggtagtttggctaccatggttcatacttttacttcatttgcaagctctatagatttgtttattttgtgccagctcagccatac<br>atttataaagatgttttcaaaatgttttatccagcatttcaactagtttgaccaaaagaatctttcagggtacctaatctgctggttatttctcatagca<br>ccatttattttaacacatgagattttaggatagagaagagataagcacatgtattcagtctactgctcaatctttgagatgtctctctctgtgtttttaa<br>aaattttttctttctataaccctattgcataattaaagccattcatttaatgaacttttacaaggcatttgtatgacaagggacattt<font color="green"><u>AAAAATTACGTA<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAGAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAATTACGTA</u></font>atgtgcatgccttcatgttgctataatctgggagtggtgacagcaaatacaataaataactcatatatagattctta<br>gtcattcctgttactataacaaaatatcacatattgggtaatttataaataacagaaatttatttctcacagttctagaggctgggaagtccaagattaa<br>ggtgctagcagattcagtgtctgctgaaggccttcttgcagcgccctcacatggtggaaaggcaaaagagcaaaacaagactaggacactccctcagcct<br>cttttataaaagcaccaatcccattcatgaggatggagcactcatgactttattacttcccagaaggccctgcctcttaatactatcacatatgcgtttt<br>ggagggatata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PLA2R1:NM:007366:11/30	
0	chr2	163666422	163666723	1000537	0	-	238625; RIP_Alu_chr2_163_01	NA	NA	SINE	Alu	Y	aaggtaatgcggactgagagcagatctaaaggctaaagataggtgagaaatgcaaatataaacatacctttcctattaatattagctgacctctactcaa<br>accaaatgcagtataaaacatttctctttcctatttcatttggtttctattatgtgtgttgcatgtatcctatgatgtgatgccaaattcctgacggaat<br>ttctgctgacacccagtccttatcttcattcacttgttcacttttctctccacttcagaagtgtatccccagtgtaataaacttattttgtatgtgtaaa<br>gtataacttctattgttttcaatttatttgattgtaaaatgaatatcatattatagatgttatttgatcataaatgtatattatatta<font color="green"><u>AAGAATAGGTGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCCAGACCATCCTGGCTAACATGGT<br>GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAATAGGTGA</u></font>gaacatatgattacaaaagaattctgtaatctttaaatcgatagcaactaaaattataaaaacttttacaaatcaatgagttaatg<br>ttattctagtgtcagagtacttctgcttctatcagtaatacggaaaatttgaaaattatctcttgcttatatatttactacctttagaatatctagaaat<br>gtttacatgagatgaaaaagttatacttgtgttatccttgtcctaaaagaaaaatattttttaaaactttaattcttgcaagatccaatggtcttactct<br>ccccaaatatatttctagcaaaatgtatttctgatatttcaagtctgacatttattttttactaaaatgcacaatgatagttattacaggaatcaaaagt<br>ac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KCNH7:NM:033272:2/16	
0	chr2	163678628	163678629	1000538	0	+	52571; RIP_Alu_chr2_163_02	NA	NA	SINE	Alu	Ya5	taactgtggtgcttatatttggacatttacatctacatactttcttcaaaagataggtttacaattatttttacatctttactttcaatacaatttatct<br>tggttctcactaaatcctggggagtggagggttggactgagtttacacctcactgtgtgaattgaggaacttttactttcagacacagtggtttctgaaa<br>caccatactgaaattgttttaatatagctgaaagacagctgtacacagagaaactgggagtccaagttgtccaaactgctgatattttcaatatagccac<br>acctaaattgagtttcagtgttcaaaattaaaaacaaattaaattgtccagaatttgattgaggccataatctccacaataaagcccctaa<font color="green"><u>GTAAAATTT<br></u></font><font color="red">TTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GTAAAATTT</u></font>ttcaaaaaccgctgctaatttcttctttgacctatgatgtaaaaatttgttttacattattttactcagccacagatgtgggtgcaa<br>acttcattttgagcacgacactcaataggcatatcaacttaatatgtattttaaacccaattccttatcacatttttaaattattttatttagcacttct<br>attgcatttactgggtacctggagctgttttaagtgcttttacaaatgtaaacacggtcctcacaaagctgaataagataggttctattataatcatatt<br>tccatttccactgatgaagaaagtgaggacagggcagaaaggtaacatatcacacaatgtgtatgttccagatttggacctaggcaacatgactccagtg<br>ttca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KCNH7:NM:033272:2/16	
0	chr2	189959423	189959424	1000539	0	+	9148;pAlu2-189923457;1104685651546; RIP_Alu_chr2_189_01	NA;NA	NA;NA	SINE	Alu	Ya5	gtaaatatcaaaagcaaattagaatttgggagctcattaaaagtatctatttttatatctccaagtgagctgaattacataattcttatattaaggtaaa<br>tgttacatttattatcattcccttccatttccaagatactcaaatacctccgcagtaatctacaataaaaaagtactttgaggttgccactaggtggcga<br>tgtttaaacatccacaagtagaaaagacgaatgaccgggaactgttaaagaacttcatttctctcgtttctctctctctctctttctctctgacacacac<br>acacacacacacacacacacacacacacacacacacacacacacacacacataaatgttatagatgttaagatctagtatatttccc<font color="green"><u>AAGAAACATACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AAACATACCA</u></font>tagtggttaagtgtcatgtgcaactagaacttagcacatcattgacggtccatctcctgacagtttgctagcttgtcactatgaagttat<br>ctgaacaatacacttaaaactgaggacgtgtgatgagagacagtcatgaaaatcattggctaatcctgaaggtcttgtaggagtatctcatactgaacta<br>ctgacatactagttctcagtccagagctattttgcctggatttggcaatgtcaagaaacatttttaactgtcacaattgtatgggggatggcagtttcaa<br>ctggcatctagtgggtagataccaggaatgccgcaaaacttcctacaatgcatatggaattatttggcctaacatatcaatagtgttaacagtgaga	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:COL5A2:NM:000393:6/54	
0	chr2	191680795	191680874	1000540	0	-	1789; RIP_Alu_chr2_191_01	NA	NA	SINE	Alu	Y	aattatgagtagacattggtaatccaaggagaggctaaattcaaggttggcaggatggtaaatgatgatgcatgttcagaagtctagagcagacagtatg<br>gaagagtcaagcagcacaggacatttccaagaaatctttgagaaaacagggcaggaagacagggaagacccagtgccaagggactacaacgttgataaaa<br>ataagaaatgggggctggacatggtagctcatgcctgtaatcccagcacttcgggaggtcaaggtgggtggctgacttgagctcaagagttcaagaccaa<br>cctgggcaatatggtgagatcccatctctataaaaaagaaaaacaggaatgaaaaatggaaaaacacatcagtcaagaagaagtt<font color="green"><u>AAAGAAGAGAGTTCC<br></u></font><font color="red">GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGAGAGTTCC</u></font>tcctt<br>gagtacctgtgaccttgggaaagacagagaaacccctggcagaagatgccagagaggtagctcatctttctcacagtgatattagggtaggtgaggaaga<br>ctgtttttcaatgatcacagatgagcgtaattatttgcaaacgccattgatgtgtgaaatgaaaaaagattattaaggcaaatgtattgactattttttt<br>taattccaggagagagacagcagcaggctaactagttgtctgttaagaacatccagagcaggaccagaatctgggccaggaactgagagacagattggga<br>caacggaacaaatctaccagggtatgctggccaacttagtcttctattatgatcaaggaaggatggcgcctgagaggtca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	195477639	195477735	1000541	0	-	13848; RIP_Alu_chr2_195_01	NA	NA	SINE	Alu	Yb8	aaaatgatgagacatataaagaaaaaaagaatgtatggtcaatatgtggggggggggggagggtggaaatgtcaatagaaactttccctaaagaagtata<br>gatattggacttccaagacaagtattttattttgttttgtttttgagacagggtcttgctatgttgcccaggctaatgttgaactcctgggatcaagcaa<br>tcctgctgtgacctcacgagtaggcgtgaacacaggcacatgtcaccatggccctgcttacaagaaaattattttaaatcaacagttataaatgcatcaa<br>agaaataaaggaaagtatgtctgaagatcaaaaggaaagtagaagtatgatgccccaccaaatagaacatataaaaatatagaagtcat<font color="green"><u>AAAAACATCCA<br></u></font><font color="red">AGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACATCCA</u></font>aatagaaatactgtagttgactcatctaataaataaaataaaatatttattagagaggctcattagcagatttgggctagtagaagaaagaa<br>tcagtgaacttgtggaaatcagaacagttgaaattatacactttgaacaacacaaaagaaaaagaaagagaaaaattaaatactgcctcagcaatctgta<br>gggtaccaacaagcataaaaacacacacatagggattagacaacttagggagaggctgaagtttttgaagtttttatttgcttcagtgcacttagaccag<br>ggttgtccaatcttggcttccctaagccacactagaagaataagaattgtcttgggtcacatgtaaaatacactaacactaacaatagctgatgagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	202721665	202721969	1000542	0	+	pAlu2-202685587;10606; RIP_Alu_chr2_202_01	NA	NA	SINE	Alu	Yb8	aagaacaagtttcttgtggagccgtggtccagtctgcaaattgctcctatctccagttgccatggtttccaggagaacgtggctctcatcttttcctgcc<br>ctgcctgtacttctccctgtccactctgttctctattttccctcagcttcctaactgagaatgccagcagaagtttagagtcacagatggattgtaggaa<br>acaatttggatgatgccaatacaaagctactgtggtgggcatatgctgctcccccaaacttcagacatttgggtttcaggttggtccaggcaatcaacag<br>tgatccttaatacaaaatgtcttggtgagagcaataatcaagaaacttggccaaagtgcttccctgccagattgtgtgcttaat<font color="green"><u>AAGATAACTGGGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGATAACTGGGTTCC</u></font>aataaaacagagaaaatatgttacattttaaaaaattttctgttgtttcaaaacaatgtgcagtttttctatataagaa<br>gaaaagtctccaggcccaacatccatagggctcatcatccattgtttttcttttaagttttcaatttaatccaaataagtcaaaaattttcaggtaccta<br>ctatctgccaggtgctgtgccgtgcgctggggctacacagatggagagggtgcattcttggatctctagtgtttgggtttggattcattcacccacactc<br>tttcaccagttctctttgttactggggtgctcatttgtgagccctgcttccatggcttggagagtttgtggctgtgggccaggctgagcttatggagcaa<br>aggga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CDK15:NM:139158:10/14	
0	chr2	209451732	209452044	1000543	0	-	pAlu2-209415649;13791; RIP_Alu_chr2_209_01	NA	NA	SINE	Alu	Yb9	atcttttcaaaataaaatattagatgcatacaataatatatttatgccagttataaataaagcacaataatgtagtttacatctagggacccagcaacca<br>aaccaaaaattggaacaccactaaaacatgcatcaatccatgagtttcttcactattccagatccctgctaaccccagaagtaatcatattagtgatgtt<br>attgataaatcatatgacttattagattatatatacacattatatattaggaatatttgatatatactatgtaacatattggcctgtatattacaaaaac<br>tgtatgtataaactattatatatgtataactaaatacttatatttcaaatatatcatgtttagttttgcttgcttttttgctttat<font color="green"><u>AAAAATCAACAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAATCAACAAAC</u></font>atgtttctaatgtttgtttttggtgttaaatacagctgtaattcaaacattttagtctgtgtttcataatatt<br>gcagttcatgaacacatgactttattcaccattcttttatcaatatttttgtttccactttaattataaaccaggctgttacggctattccttccttcct<br>tccttccttccttaattgccaagctcatttgatataatattatggctattcttacaatgcacaagaagtttctagaatgtacactcagaaatgaaattgc<br>tgagtcataggccatgtgactattcaaacttacatgattaatgccaacaacaaatttttacgcctatcaaaagcatataagcattttcattggctcacaa<br>cttctccatcact	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	214775217	214775511	1000544	0	-	12563; RIP_Alu_chr2_214_01	NA	NA	SINE	Alu	Yc1	ggcagagtgagactctgtctcaaacaaaacaaaacaaaaacttgtttctattgaaaatgactttagttttgaaaatcaaatatattacaggtgccagatt<br>gatggtaatcactttttttttaaagaaatgtactgaagtgtttttatgagagggggtggaacaggaggactcaatagttcttacatcactaagtaggaag<br>tggaaagtgtagaagcaagaagacttggttggcttctcattctggctctgcataaatgtccccacatgatcttggacagtttatttaatatttacattta<br>ccatctctgaaacttactgtctttatttggaaatatggataataaattctggttgatatacttttaatgattgttttgtagatctagt<font color="green"><u>AAAAGAATTCTT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAACTACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>AATTCTT</u></font>acaaaagcaaatttttaattatttccacctttcaaatttgggattattttgtaaaaattctcttgttatctctagttaagacttttgttttgt<br>tttgtttgctgaaatgagttgttcctctcctagaaaatcttcagtaaaaagtaatagatttatatgatctgaagagaagtcagaatataagttcttatgt<br>agaatagtttatcactatttccgtaactagtggaataaaataaattactatcgttatattgtagtctcattgacctgtgtctatctattcaatagaacta<br>tttgaattcataaaaaggctattagtcacaatgttctgttaccatagaatatgtatgtattaatttcatgcagcagaattacatacaaccaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SPAG16:NM:024532:11/16	
0	chr2	217092810	217093111	1000545	0	-	17889; RIP_Alu_chr2_216_01	NA	NA	SINE	Alu	Yc1	ataaggctattgtaaccaaaccagcatggtattggtatagaaacagacacatagaccaaagcaacagagtagagaatccagaaataaatccacatattta<br>cagctaaatgatttttgacaaaggcatcaagaacatacattgtggaaagaatactctcttcaataaacagtgctgagaaaattggatattttctcagtgc<br>agaaacatgaaacagtgcagaaaaatgaaaatggatcccaatctcttcccacatacaaaactcgagatgaattaaagacgtaaatgtaagacaccaaact<br>ataaaactactagacaagaaaaatacacaaattgggctcaacaaattaaaaagctatcttctgcattccatatcatctagtggtt<font color="green"><u>AGAAAGAAAGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAAGAAAGAAAGA</u></font>aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagcttctgcatagcaaaggaaacaacagagtgaagagatg<br>acttaataaatactcaaggtgatggataccctaaatatcctgacttgatcattctacactctatgcatgtaacaaaacaagtgtaccccataaatacata<br>aaatatcatatcaattttaaaaaccaacaactttgcatagggcatgacgcatcacctctgtgaactgatgagtccaagcatcttgccatgcatctgcttt<br>aagaacacatggcgctcccgtctccctctccctctcccgtctccctctccctctcccgtctccctctccctctcccgtctccctctccctctcccgtctc<br>cc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	223797368	223797675	1000546	0	+	238378; RIP_Alu_chr2_223_01	NA	NA	SINE	Alu	Yb8	gataccagaaataaacctgttcagaagaacatacttgaagccctgctaatggagtccattaagtagaagttaattgtttttctttctttctttttttgag<br>atgtagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcagctcactgcaacctctgtctcctgggttcacgcaattctcctgcctcagcc<br>tcctgagtagctgggattacaggtgtgcaccaccacgcccagctagttttcgtatttttagtagagtcggggtttcaccatgttggccaggctggtctcg<br>aactcctgacctcaagtgatgtgcccgcctcggcctcccgaagtgctgggattacagacatgagccactggacctggcctgtttttctttt<font color="green"><u>AAAAGCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAGCATG</u></font>tatttagcagtacaaaaattagggcctaattttaatatgtgcttttaatttcagcataaccattaatgcttaattttgcaaag<br>ttttaaataatttgatagcaaattacttagagaatggccagtatttatatatgtattaaatgttactaatattattactcattgttttcccctctccacc<br>tttctttgttttgcagatcgtaaaaaggaccttgtaaaactacaggcaggggaatatgtttctcttgggaaagtagaggcagctttgaagaatcttccac<br>tagtagataacatttgtgcatatgcaaacaggtaagaacgtggaattcatactacttttacttaaaatatttgatgtccatagacatttcctacctgtat<br>ggaccttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ACSL3:NM:203372:13/16	
0	chr2	227017574	227017806	1000547	0	-	570; RIP_Alu_chr2_226_01	NA	NA	SINE	Alu	Ya5a2	gagtacactcattaaagaaacaaatattcagatgtatatacatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatacacacaca<br>catgtaaaatagaacggaattttgggacaaaccaagaaatataataaatatgcacaaagagctaagagaaaatagacagatacatgtgtgtatgtgtgtg<br>taatctccctctgactttattaggaataaaatataatacttaaaacaaagaacacatagaagggataaacaccaggatggatacagctaaagaaaaagct<br>gggaattagacagctgaaaagtcacatggaaaaactccacaggaacagaaactgatgaagaaaaataaaataataagccaggct<font color="green"><u>AGAAGATGGAGAAAGA<br></u></font><font color="red">GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTGCTTGGGAGG<br>CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT<br>CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGATGGAGAAAGA</u></font>atcaacatatagtaatgggagtctcagaagacaaggaaaaaaacagaaaag<br>agaacatgtctttagaaataatgaatatacagtttaaaaatttcaaaaagattacataccttgcattaaaaaggctcttagagtatcaatttggagagaa<br>ttaaaaacctacatcttgacatattgcagcaatattttaaaacattggagggaaatatattattctaaaagtctctatagaggaagaataaatcatggca<br>aaataataatcagattgatgccaaatttttcagtaccaatgctggatataaaatagaaacatagaaatatttttaaattatgaagaaaaataaattctac<br>cacacttttatttcaagccaaattattatttaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	231325310	231325637	1000548	0	-	Yb8JW659;14218;Yb8AC1527; RIP_Alu_chr2_231_02	GTGGAAACAGTTAATGGGAAGTG	AAGTGGGTTTTGAATGATCACG	SINE	Alu	Yb8	accagtcgcacagaacaggaattaatttggattccatggttgtgtagctctgcctctgggcctaattgtaataaatgaagaattttcatttgtgtcccca<br>gtgaacctccttcactatcattaataactccccctctctgcaatttcactgctggggctagaccttcaccccacctccgtgtttttccttttgctcaact<br>ctgtcccttcctttgtgcctctcttggctctgttttgttttttacctttccctttacctactcgtctcattctttgatggttaatattttgctttttaaa<br>aaaaataaaaattataattgcagtataagacacatgaataaaagtgggttttgaatgatcacgaaggaagtaaatcactttgatc<font color="green"><u>AAGAAACAGATTACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACAGATTACC</u></font>aataccccagacacctcctggtgacacttcccattaactgtttccactaacttgctc<br>aaagacaactaccattgaggtttccaacactaaggttaattttgcttgttgtgtaatttataaaaatggaataatctcttttctctccactctttctttc<br>tccctttacctctctctcaatatatatagatctcccaaaagaagccaaatcccccaaaattgtatggatattttactcaacatgcttgtgaaagtcatct<br>gtattcgttttgtataattattttcactactagatagtattccattatagaaataagccatgaattatttattcatttgtacaatttcaagcatttggct<br>tctatgaataatgctgccttgagcattc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	449	106	NA	intron:SP100:NM:003113:8/25
0	chr3	661726	662017	1000549	0	+	238103; RIP_Alu_chr3_000_01	NA	NA	SINE	Alu	Yb3a2	agggaatctggcagcagactgccttagacttgagctgcaacgttcattctttcctgggtctccagcttgctggtctatcctgcagattttggacttacta<br>gcctccacaatcacataagccaatttcttaaaataaatctatttctctctctctctgtctctttctccatccattcatccattcatccgtctacacattt<br>tttattgtttatttttctctggagaatcttgacggatacaccatctgtttatcaatcattcttgaaacagaaaattctacctgtgtatgcaccttgactg<br>gaaagagtttttgccaagtctgtactgtacctagttaaggcatatttagaaacatggccgtgggaaaacaaaaaacagcaagatt<font color="green"><u>AAAACATGGAGATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGCGCCTGTAGTCCCAGTTACTCGGGAGGCTGAGGCAGAAGAATGGCCTG<br>AACCCGGGAGGCGGAACTTGCAGTGAGCCAAGATAGTGCCACTACACTCCGGCCTGGGTGAAAGAACAAGACTCGGTCTCAAAAAAAAAGAA</font><font color="green"><u>AAAACATG<br>GAGATAT</u></font>attatatatcctaattctacaaggatgtttctggctttacttatgtgtgtattaaggtttttcttctcttcttccacactattttcttatagt<br>tgacatatggtaatatagtaagaaaaaatacacatatatttcttcttgcaatatatattcattgggatgtttaacactgagtgtcaacctgattggattg<br>aaggatgcaaagtattgatcctggggtgtgtctgtgagggtgttgccaaagagattaacatttgagtcagtgggctgggaaaggcagacccaccctcaat<br>gtgggtgggcacaatctaatcagctgccagtgtggccagaatataaagcaggcagaaaaacgtgaaaaggctagactggcttagcctcccat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	1606423	1606424	1000550	0	+	239286; RIP_Alu_chr3_001_01	NA	NA	SINE	Alu	Ya4	tgtgaactaggaaagtgtgacctccttttggaggtgaaacagatatacagattacatgactcgtaaaaggtctaatggtggatctggaactatctggctt<br>ctacttccttcttcattgtcatcctcatcatctatgcttcaggatttgggtatctgtagaaacttcaggtggatttttcctattttcttatgtgagctgt<br>gctgaagtttctacctttgcctatagcagagtcatttgaataacaccacacagcgctcctcctctaactacctttgattgaacaccattggtgctttgac<br>ccattgtacatgggggtcagcccaagttaattggcaattccaaaccaccattctctgttgagctaataggaacaaaaggatct<font color="green"><u>AGAAATTAGTGCCATAA<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA<br>AATAAAATAAAATAAAATAAAATAAA</font><font color="green"><u>AGAAATTAGTGCCATAA</u></font>aggcaacctggctgttttagaaatttctcccttggtaactgccttctcaccatattt<br>cattagctttaaatttgcagactatgaaagatgaagttttaccaactgaaaacacatctaggaaatttttccatgctcatgggtaggaagaatcaatatc<br>gtgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgcctttcttcacagaattggaaaaaactactttaa<br>agttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatacta<br>caaggctacagtaaccaaaacagcat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	2633042	2633347	1000551	0	-	15487; RIP_Alu_chr3_002_01	NA	NA	SINE	Alu	Ya5	acaaaaaattttaaaaaactagccaggtgtgttggcatgcacctgtagtcccagcatactagggaggctgagggagggggatgccttgagcccaggagtt<br>tgaggtttcagtgagctatgattgcactacttactccagcctggtctcacagaacgagaccctgcctcaaaaaataaaaataaataaaaaaataaaaacc<br>tttcaatgattgcttcttagtctcgactcaaataaagagcagactactacacctggcattcaacacttacttttctttacctcccttacatgagagacaa<br>gttgggatctcatttttcttcgtttaggcctttcaaaaattcacctcatattttttttcgcttagtttcagaaggctacaatttt<font color="green"><u>AAAAAGTCACAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCCGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAGTCACAAATC</u></font>tactagttcttcaaagggcagactacatcaaaagtatctaagcacttgacttgtatttctttaagggactttatcagct<br>tataatacaaacaattattcatatattcaaaaatttattgaacatctggacaatgtgatcatggagatgtagcaatgaactctacagacacattttctct<br>tcaaatggagctccagtctagatggtgagatgcacaagcgagttactacaaactgagatgaaagcaattagcaattataaattgtaagaaatattgtgat<br>ggtctaggcactgtttccaacttggaaaataacaaggatcctccacaaagggacctcctggagtgatgcattatttcgaatattgatgatgatttcacag<br>ttatat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CNTN4:NM:175607:3/24	
0	chr3	15294344	15294345	1000552	0	+	17005; RIP_Alu_chr3_015_01	NA	NA	SINE	Alu	Ya5	acactaatgagatttcactttggtaaatacttcatgctttcagttttagcctattaattttaggtggacaaatttaacaagttttctgttactttttaaa<br>aagaaaaaatccagaacataagaactatattatgaacacatgatttgaacctgttgtggtaaagatcttgtacaggatgcaaactaaaaacctaatccct<br>gccatcaaatttattagaagagacctatatatgaacaacttaaaggcactgatttctataatagagctctaaaaacatgccaccagtgtatgaataaggg<br>aaagattaattttggctggaccaatataaaaaattgtatttgaagaattgatactttaacttggaccttgaaggtaaagcttcaa<font color="green"><u>AAAAGACAGGTTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAGACAGGTTACT</u></font>tatgtacccaatgtgtatatttttctttttaatcttcccaatagctgaataaagtatagatactattatttgtacttcttac<br>aattgaggaaataagcctaagagattaaaagattttgcccagggttcacaagccttcttccctgagccctgattgagctgctgtgtgtgtctaatggcac<br>ccacagtcacggccgtctagtcgagggagggacaagatctagacccattgtagagggaggaaaaacaatccaggccttttggaggttctaaataacagac<br>agaccagttgaattgttagagaggatgactcaagtttctaattcagcacatggacagatgctcatagcttcagtgaaaggtaagttttgacacattaaat<br>tgc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	exon:3UTR:CAPN7:NM_014296	
0	chr3	23764074	23764387	1000553	0	+	239048;pAlu3-23613773; RIP_Alu_chr3_023_02	NA	NA	SINE	Alu	Y	ccagcctgggagacagaatgagaccctgcctcaaaaaaaaaaaaaaaaaaaattaaagggtgaggtgctggggaagtctgcagcattgttttccaattgt<br>taatatgttccattaattttcccaaggtgttcaaaatgagtttctagatgctatgcctacatgcagtgtacaaattacagtgtttaggggaatgttgaca<br>tttgttatactagttgtgtgacacttctcagtgagtaaactcatctaatcatttgtaaatctcagaactgttgacttctgtattcagaaacaatttattt<br>attaactctgaaaaatgttcagttgttttcagagaagagttcagtcttatatgtaattattctggagaagagcaacatttcttt<font color="green"><u>AAAATGTTTGATACAA<br></u></font><font color="red">GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAGCACGG<br>TGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGCCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAATGTTTGATACAA</u></font>atatcaaatgattctccaaatatatgttggagaatataatttccctttgaaaatgttttctgaagactgg<br>aaaattaacttgcataatgtctccatccaacaagtcattaatttacagccttccaaacacgtttgtctgaatcttaaaagtaactggttaactttcattt<br>ttcctctcataactgtgacaaaatccctactcgtggctaccaatggctggaggatgcacttcatacatttctcagagtctacatgtatttagatctacac<br>agaaaaattgaaagatcccaaattttatttccgtgtaataccacaaagcttcttttgggtgaaacagtgctttttctggtggtcctcttgtaagtgcaaa<br>tttgcctgagagac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	35051672	35051985	1000554	0	-	239280;pAlu3-34898171; RIP_Alu_chr3_035_01	NA	NA	SINE	Alu	Yb8	acagaatacaaattagcttgatggggactctttatgccctttgactggtgcagagggcattcagtgaaggtgacttgaaacttgaaggccttactgtttt<br>ccagaagaaggttgataaacagctcatggagcccgaaggtgttagtgtaattcacctacaactcttgtcagggcaggtacctcagaggaacagcataatc<br>aggggagtacctactacagagttcagcagaagaggagagagaaatagattctctgtgacaaatatattataaattgaaattctgtatgagagcatttgaa<br>gttaaagcttaagtactattttttaaattgctcgaaaaatatctaaatcctgtacttgttaatcttctttgtgtatttagggaaat<font color="green"><u>AAAGAATTTAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATTTAAATA</u></font>taccttctttaaatacctcgaaaaacatcttcccataggctgaaaattgcctaatatattttttgatttttt<br>aaaaaaaaattattctcaaaaatatctattgagggctttccgtgtatcagacactcttctggatgctgagaagacttcagaatacaatgcatccaaagac<br>catggcttcatggagtttagattgtagaatagcttgacaagcagtaaacataacaaatgaataaataaattatatagtatgttagaagatagtaattact<br>atgggaaaacaaatatagagaaaagttaggaaaatccaaagtttgggatgatgattgaaatttaaacaggataaaaagtaaatttgataattgatttgaa<br>gggtgcaaggagat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	43031107	43031420	1000555	0	-	315;pAlu3-42850242; RIP_Alu_chr3_043_01	NA	NA	SINE	Alu	Ya5	acccaggctggaatgcagtgacatgatcatagctcactgcaccctcgacctcctgggcccaagcaatcctcccacctcagcctcttaagtagctgggact<br>ataggcacacacctttttaaacttttgtagagatagggtctctctctacataagtttatgttgcccaacatagacaaaagtctatgttgcccaggctggt<br>cttgaactcctgaaccaagggatcctccctcctcagcctcccaaagtgctggaattacaagcatgagccaccacacctggccctgcacagggactcttga<br>ccatgcagacctcccagcaggtgcacctgtctatgctgtgagtctaacgctgggagcaccacacagagactcctccaaagagaccc<font color="green"><u>AAAAGAAAGCAGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGCAGGT</u></font>aggattttccatgataaacaggtattgctcttacaatttacaaaagacagagataaaacaatagagttgcaa<br>aaccctaacaggcccaaaaggaaaattgaggaaaacattcccctataattaggtcaggaaaagaagcagtgacaatattcaaaagaacaagtttctaaga<br>atcctacctcaactctacattcaccaaaaagaaagatcaacggcattctgaaccctaaaagggaagtccagacagacagaatgggacacctagaaggaag<br>agattgcacagacctggagacagaaagcaaatgtgaggacccaccccatccattaatgcaccttttcccaggctctgtaggaaatgtgttccttgctcct<br>ccctgcaaccctct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM198A:NM:001129908:1/5	
0	chr3	67689925	67689926	1000556	0	+	21484; RIP_Alu_chr3_067_01	NA	NA	SINE	Alu	Ya5	taatagttcctggcatgtttttaaagaaagctctgtcaaggctttcttctgtgtaatttattgtaatgtacattcgaaaaaaatgtatatgtatcagtaa<br>tttaccaagcccatactttcatggacactattacttatggaggggctcaaatgtggatttaaatatttttaatagtgaatagatttagaagaaaaatgtg<br>aagtcaatgatattgatacttaaacatcacaaaaagccctgaagaggtattaccctagatgaggcaccgaagtgttaaaccagttgtccgaggcacaaag<br>ctagtaagtggcttacatgtcacattagccatggaagagccttgcagcagatgctctcagtgctccatccgcatggcctcagatcgcgcc<font color="green"><u>AAAAATGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAATGGTG</u></font>ctgtgcactcttactcccaagagcagccccggcaggtctttgtcttaagatgctgaagacaacatgcccttaaagaacctt<br>gaagagggtatataaatacttcaactctcttgcccctaactacaactctgaggtgtaacctacacagtttccatagctgtcctgtggaattaagcaaagt<br>caccctctttgggattcagtttaataacacacccttctcagcctccttcccttcaacttctctaaacccctttgagtttttcctgagaatgcctccccga<br>aaagccactttcacatgaatccttttctcaggatgtgtgaccagggaacaataagaaaagtcttggggttactatggtccaaggttccccaaacaagaat<br>cactcatac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SUCLG2:NM:003848:1/11	
0	chr3	68870492	68870766	1000557	0	-	17560;pAlu3-68694102; RIP_Alu_chr3_068_02	NA	NA	SINE	Alu	Ye5	ttaacatgaggctcaataggattgcaaaattaataccggtagagattttctacaggcggtttccattgcagaattaccggagaagcatttgcaaatacct<br>ttttaagtgatggatttggcagcacagtctttaaatagaagacagagagctgctagttacttatcatggtttaaatatgtcaatattttctcatttttct<br>ttgaataaaaagtaacataagggtaaaacacctgaaagaagtatagtacttgggaatgcacccttcaggcttcactctttatggcaaggttgaaaatcca<br>gggtagcagtggtgtttattgccaaggtagtgccttgaagaactcatataattcacaaagcgtatcattcaggacttgttttctctt<font color="green"><u>AAAAAAAAAAAAA<br></u></font><font color="red">GCACACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGTGGAGCCTGCAGTGAGCC<br>GAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAA</u></font>agcagggaggtt<br>gtctacatagtgtataaatctacagccatcatatcttattgttgttttgatgctgtgtttatatcttaggattatctctaatagctgtgagtcctcactg<br>aaattaacagcgtggtatattttggcagtggttcaaaagttattgatttttggttatgtttttcagcatcactgaatgtatggaagacattattatagaa<br>tttgtaaaagattttaacctgggagtattggctgttaaaacacacagcacattagtgactaaaatgatttacagaatgcatttccatactactaagtccg<br>tgggtatttgtacactacatcatttggtaccaccttgtggtacagcataaacacagtttgtaattcctttggttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM19A4:NM:182522:3/7	
0	chr3	88609668	88609669	1000558	0	+	22109; RIP_Alu_chr3_088_01	NA	NA	SINE	Alu	Yb8	acagctaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcgtaagacagggatgccctctctcaccactcctattcaacatag<br>tgttggaagcatttttttctttgtcgtgatttacttggtggatcagaataacttcattcttgtcagggaacaaaaataatggtcactcttagagttgaca<br>aagatgtacatgtacatgtttgaaggaatggtgtgatgctaagaagtttgccgacagataagttttagtgtgatatggaacacctcaaacctcatagtct<br>caagaattaattatctcatgagctggactcagctagaaggccagtaggtcagtaggatatagaggttccagttgcagttaaaagg<font color="green"><u>GCTCACTTTTGGAGC<br></u></font><font color="red">CGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GCTCACTTTTGGAGC</u></font>tgtgtcac<br>catgtgtcatctaattcaacagaaatttcccaggctcaagacatcttacctaggaaactactttttttagcttgtgtcccctgagggtcgagtgtattac<br>actggcaaatctgtagcttgaattttactcctggtcgtagattcctgggtttgcagaatctctgctcagcacaacctttgttcaatagagatgctaatga<br>attttcccaagtcaggagaatttataagcataacaaagacactccttggaaatagccaaaatatctatgtaaacaaatagaacatttttcatgggtctgg<br>agttcctgcataaaaggacattttgacttgagatttaatggttactatggcattagttgtataggcacaagctatta	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	102283788	102284112	1000559	0	-	pAlu3-103564923;6153; RIP_Alu_chr3_103_01	NA	NA	SINE	Alu	Yb8	gaatttgagatggccattagaatccctgaggggagattggatgaaactgtctataaaaagtatgagtagatagagaaaagcagaggacaagaagaggaag<br>tagagccaacaaaagcctacagaagaaaagccaggaagtagcagggaaaatcagagacttgaaggttttgagaaaccccacatatgcacatgtaattttc<br>tgcgagagaagggagcagtgatatgggctggactccctccctcccactgccaaatttatgtgttgaaatcctaacccctagtatctcacaatgtgattgt<br>atttggagatacggtgtttaaagaggtaactgagttaaaataagattgttagagagggctctaattcaatatcactggcatctttat<font color="green"><u>AAGAAGAGGAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAGGAAAT</u></font>tagttctggaaggagttgtactgcacatctagtgccccaattatctggcttctttcagcttc<br>tccctgggagttgcacaacatatccagctgcccaacttttctgcctgctacccaagggactggcttctaacttgactatccctgagagccactgggatct<br>ggcatctgctaggcccctgggagctgcagagagcaaaaacacagtttgaaagagtgtgcagaatgaacgagagtacaggcattgctatagctcttctccc<br>cagctcaaaggggagtaagtgggtgataaactccagctttcagcttctctctgaggagagaagggattggaccagccatctaatgccccaatttttttac<br>ttgctactagatggactggcttctg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	112467402	112467712	1000560	0	-	pAlu3-113748530;16468; RIP_Alu_chr3_113_01	NA	NA	SINE	Alu	Yb3a2	tttaagatgattctcacttacaagaacactgagtggtaagttgagaaaactatgattctcatgttcaagactattttccaattgttcaccctatatttcc<br>tgttcaatgcccctttacccactttctctgccccaacctgttttcccagataattctccccatctagtaactcccctttccttttgctcattatccccaa<br>cttttagtactttccagagtgccagctctggaccctttatccttcaggctcaaagccctgtactattttattttctctggtgcaattatcctccataact<br>gaaatccagagctcaaatcactaacaactaaaagctaacttctaaggatgcttagtcatcatacacttcctagaagggaat<font color="green"><u>AAGAAATATTTACCTTCCC<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAATATTTACCTTCCC</u></font>tcctgggtgtggggagtgatgggaaccaagtgggagcagagaaagttccctccctcctagaatgggttta<br>attactccttcccttgcaaagaagcaaagagaaacagaaaacaggtagtgatgtcaccatatcaaaactggttaaaaactcatatgctgttacctttata<br>ttaccatatgctgtgtcttgtatgttcagaataatttcttataattaagggaagaaaattatgatgcccttagagcttcatgtgtgttggcttctgttcg<br>tcctctgtttgatcatgtcccagtgggctggtggaaaggatctggtgaaagtgatttctttataaatttctcttttattattacattatctgggccctgg<br>tcaccaaatct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	113854034	113854347	1000561	0	-	981; RIP_Alu_chr3_115_01	NA	NA	SINE	Alu	Yb8	accaacatggtgaaaccccatctctacttaaaaaaatacaaaaattagccgggcatggtggcatgcacctataatcccagctactcaggaggctgaggca<br>caagaatcactctaacccaggaagcaaaggttgcagtgagcagagatttcaccactacactccagcctgggcgacagagggaaactccatctcaaaaaca<br>aacaaacaacaacaaaaaaaaacaaacaaaaaaacacaccataatctctgttgtaaataggcattcagataaaatgaaatatgcttattttaattattag<br>aaaatgccatcaaactaaaaaccaaaaaatgttaaatatgtattctcttaacttgacgtcatgttaagtgaaataagccagacatagt<font color="green"><u>AAGACAAATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGC<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGACAAATATC</u></font>acatgttctcaatcacatatggaagctaaaaaagtggttatcgtgaaaatagagagtaggttcatggttaccag<br>aggctaggaaggagatgggggagggggcgagaaagagaggtggattcaggggtacaaacatacaattaaatagaaggaacaagttctagtgtctaatagc<br>acagtagggtgactacgcttaacaacagtttttatatatttcagaatacctagaagaaaagatttgaaatgctcccaacacaaagaaatgataattgttt<br>gaagtgatgactagcctgatttgatcattacacattgtatgcatgtatcaaaatattgcatttgccccacaaatatgtaaaattattatatatgaatttt<br>taaaatcttcaaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DRD3:NM:033663:5/8	
0	chr3	116275285	116275595	1000562	0	+	30973; RIP_Alu_chr3_117_01	GTTGTGCCCCATTTCAACTACTG	GCGTCTAACATCCTTCCTAGATTG	SINE	Alu	Ye5	atgtatatggtatataagaaacaaatgcatatcatgtttagacttaggtcccatccccaagaaatctcattatatatatgcaaatattccaaaaatttta<br>caaaaagatctgaattctgaaacacatctggtcctaagcattgcagataagaaatactcaacctatatatatttgggtgaaaaagtttgatgggtttacc<br>catttatgtttgttgtgccccatttcaactactgtttgtcctagaaaatgagatgaacaataaaatttcagatttaggttttataactttttaaatatac<br>acttaaatgcacgcgcgcgcacacacacacacacacacagagtagctaataaatggctcctacttcaccatgttcgaattcctttata<font color="green"><u>AAAAAATCTTCA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAAATCTTCA</u></font>gaagtatagtatgggcctttcatgaagggtatacctaaaaggtacaatctaggaaggatgttagacgctgtcctgat<br>taatacttaggaaacctgaactaacttttctgtagaataaaaagataaaaagaggctggccttcatctgaaagagggttataaataaaatccatatcatc<br>attttacttatgacaaaaatcacaatttttttctcctttaaaatggcataccttattttgtcatttttaaaaataaataaatacagacctgggtagttaa<br>aattgccaagggaatggaagtgggtagcgatgtgcatgcagtgtgatggcagaccagagctgtaggagctcttcacactgcttcagtgaggttgctaagg<br>gatatgagccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr3	124568674	124568675	1000563	0	+	2237;pAlu3-125850277; RIP_Alu_chr3_126_02	NA	NA	SINE	Alu	Yb8	ttatgccacatcacctgtgtttgtttctatttctctcgccatttaccagactagtatttatttggggggcatatttgatgttttgggacatcacaggcac<br>aactcattatcattggaaactacatatataaatacaggaagacagattccaaattttagctctatcgaaaaaagaaaacaagaagaaagagaaaagacag<br>cactagatttgtctaccagctacaataagatagccaacaggcagagaaaaggggaattaattcagaggaaaagaacaaagagaaaagctagtgtctggca<br>ggtgtggccttttctgtctcaccctatagagttcaaagagaggctcaagtcagggcaataactggaagacccaggccacgataatga<font color="green"><u>TAGAAATTATGAA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTTAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>TAGAAATTATGAA</u></font>aaacaaatcacttagaaccaactttaaggctcaactcataccagatcattctatctgccttgggcttattaacct<br>ttcaggagtgccaagagatgccctatttatcctgcagtagaactgtctacacatacttgaaatttggatagattctttgtgtgtgtagaggcacaacagc<br>aaaggtggcctcactcctgcccagcgggtctacacctgacttgccggcagccacatctcagagcaaccagtctttcatctcaagctgacaactagcaagc<br>tgaagccttctttaacttgcagggaactcaatcctctatgcttcctctcctcctcccaccgtgacaacaaggcatatttcactaactagatcacgaagaa<br>tccaatgatcaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ITGB5:NM:002213:3/15	
0	chr3	143705285	143705593	1000564	0	+	4020; RIP_Alu_chr3_145_01	NA	NA	SINE	Alu	Ye5	gtgtcagttgaaaatattgttatttgaaatatatctaacctacgggacatcatagcttagtcttgcctaccttagacatactcagaacacttacattagt<br>ctaaagttgggggaaattgtgtaaaacaaagcctatttataataaactgttgaatataattatattcatgtaatatattgaattctgtactgaaagtgaa<br>aaacagaatggttgtatgggttcttgaaatatggtttgtactttatttttaaccattttgatgatccctggcactgcagctctgagtttggtttgacatt<br>ctgattattacatctcacccaaaactttgctctccatttacttttgagttcttcatgggatagatgagtagtgtctgaagtgtttt<font color="green"><u>GAAAATTAAATGCC<br></u></font><font color="red">GGCCGGGTGCGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG<br>AAAATTAAA</font><font color="green"><u>GAAAATTAAATGCC</u></font>atagaagttgtaaagcatcaagaacaaagcctgtaggtctagaaccaattcagttagcaaaaccaaagggttgttgc<br>tccatggtgagggttttatattttttaatcccctctttccccctgataaaagtaatatgagtatcttttgacaaacaaaggctgaaaatttacggcacct<br>ggggaaaagtttatgtgacagccatatattaggttgacatttactttttgcatgatcttggcatgatcctattaaatacttgatttttcccactcccttt<br>ttcagattttatacttaccagaccacttttctgattatttcttgacttgccatgtagatcctcctacaggaagtgaacaccctgctggagtattctactc<br>tctatttac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:C3orf58:NM:173552:2/3	
0	chr3	148206488	148206794	1000565	0	-	12662; RIP_Alu_chr3_149_01	NA	NA	SINE	Alu	Yc1	gtgtgtatagaagggaagttaatcagaggaccatttaaagccattttctggctcaggttgtagaataagctattttgtttttattggagcagagtaggac<br>acaaataagatagctgtacttaaatgagtcttcaatcagagcaaaaaagcccatgtatatttgtttttccatttttcatctacttttgccaattttgagc<br>aaagttgcaaaacacactaacaagtgttcgggagtatcatcaatctcattaactgtggtgaaagtataaattggtagatgattttaaagaaacctgtcta<br>tctatctgtatctatctatctatctatctatctatctatctatctatctatcatctatctatccatctacctacctatctatcatctat<font color="green"><u>AAGAACTTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAACTTGAG</u></font>aataatatctattccatttggcccagtaattccaacttttagaaatttatactaagaaaattagatagagatttatttataa<br>agattttccatgcattgctattcttaatcatttattttaaaaattggcaaatataacacaaatgatgaaaactacataaaacatacaacaattataaagc<br>aagcacatatatgaatatcacataaatcaagacagaatggggccaacacacaaaaaacctctttcctacttgccccaaaggtaaccactatactgaattt<br>tatttcaacaccaagcatgcatccttaaataatatgggttttcctggtttttaaatcttatatgaatggaataattctgcatatatgtgtttgtgtcttg<br>cttcttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	148566803	148567110	1000566	0	-	pAlu3-149848310;Yb8AC1126;238424; RIP_Alu_chr3_150_01	CTTCCTTTGACGGTAGTGGC	CCCATTTGCAAACTGCTTTT	SINE	Alu	Yb8	tgcaagacacatgccctggattggcacctttgtgtagtgcgctctgctttccattttgttaatctgtggagagggacaagatacttgttggctggatatt<br>cttctggcttcccatttttcactttgaagttgtattattattattattaacagtgtcatgtagacatctttgcaggggaggtgcaccaaagattgggagc<br>ttcttcctgcccaataagtgcagccatatggctaggtttgagagccttttctcccagttttaatttctctgacaataacaaggtcacagaattcaatatt<br>tcattgtcctttagaattttggaaatctaaattcattgtttttcttttaagtctcaaaacttcctttgacggtagtggcaactttatatt<font color="green"><u>AAAGAGGTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT<br>GAACCCGGGAAGCGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAGGTCT</u></font>acactgagagactggacagtttatgaggccattagaagctcagagtgcactttgtattcttgctttaaacaatatagtatga<br>gtaaaagcagtttgcaaatgggaaagcattatatgtgtaagatattcttgttattccatctactttctactgctctgctaaacatatcttagagaaacat<br>tgtagtcttctctgcaatccatataatacttttcctgttctttacttcattggtcttttgcattcttatctctgcctttctttcttctgaaggttgtctc<br>atgatatgagcaattattaggcaagctacatgtaaaatcattcagaaatgaaggcacatacatttttatcatgactcagatatcaaaggactgctgttta<br>taggatgt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	463	145	NA	intron:CPB1:NM:001871:9/11
0	chr3	148844387	148844700	1000567	0	+	pAlu3-150125897;9502;Ya5ACA1086; RIP_Alu_chr3_150_02	NA	NA	SINE	Alu	Ya4	cttaaaggcaaggataccctctaaatgcagcaagccaggaaaactacagaagtggcctgcctgtgccactttggcaaagaaaactagggaagagagggga<br>gagaagaggaggctagggaagagagaaggagggccatttggagctgtcgtttccacctccttacaccccaccaactgctctatctgaaggctgagggctg<br>gacacctcaatgctggcacctgatttccccaagtgccttgggcttctctgacagtagtgatggtgttgtttagagatgcagaaaccacttcatccattgc<br>tctgagagagtcacgttctattcttcaggaagcatgcttacaacaccaacctaatttttaaaaaatctttcagaggcccctttttt<font color="green"><u>AAGATGCAAAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGATGCAAAAATA</u></font>atggagccacctatgcaaatagtggtcagctaccttttgggaattcctatacactttccttgtttgtttttt<br>gtgacttttccagaaagaactttgaggaaataaagaaataaaaaatgagaagtaaatggtattttgtgagtgactttctcaacacattctctaagaccaa<br>tgcagatatcccgaggtacctcacagatgggataggaaatcagtgctccagagatccagaatccttcttttctaggctggttgagtagagctctttgtcc<br>atgttgttgcagaaccatttttgtagccatccccagtggtgttgtcacctagaagaaacttgggggagctttttacccacatagcaccctcaatctcccc<br>agcaaatacagctt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	163464176	163464473	1000568	0	-	238904; RIP_Alu_chr3_164_01	NA	NA	SINE	Alu	Yc2	actctgaaagataaatataagaatatatccgtgacattgattgaactttttaacagaacagaaaaattaataaccataaaataatgtattggtaatttga<br>caaattatagagctatttgtttattgaaacaaaaaaggaacaaaatcaaaacaaggacaagctacatcagtgaagaataaatgatattgattctttcaat<br>tcatgagtatgggatgtttttccatgtatttgtatcatctctgatttctttgaaaagtattttgtagttcttctaggagagatctttcacctccttggtt<br>agctgtattcctaggcatttaatttttttgtggctgtcataaaagggataatgttcttaatttgactctcagcctgaatgtcactgatgtat<font color="green"><u>AAAAATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATGC</u></font>tactgatttttgtacaataattttgtattctgacaccttgctaaaaggtttacacagatgttgttctagaaccaagaaactattaaattagaag<br>tagaaaaaaattatgcatttgtttagaaattaataaaaacacttctaattaactcatgaatataagaaaaaatttataatttttaattatttattttaat<br>ttttgactcttgttatgaatatacaccagtatatatttattgtatacatgtgatattttgataaaaccatacaatgcataatgattaatcagggtaattg<br>tgctattcatcacctcaagcatttatcatttctttatgttagtgacataatttggatatttgtccccactcaaatctcatgttgaaatgtaatctcca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	166390224	166390225	1000569	0	+	21709; RIP_Alu_chr3_167_01	NA	NA	SINE	Alu	Ye2	aatttgtgtatttttgatggagtcggggtttaaccatgttggccaaactggtcccaaactcctgatctcaggtggtctgcctgcctcggcctcccaaagt<br>gctgggattacagttgtgagccaccatagaggtggaggcaggagaatcacttgaacctgggaggcagaggttgcactgagctgagatcatgccactgcac<br>tccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaatgctgactctcacatcactggtgatcttcctttgctaaaccccaggtct<br>aatgtgcttaggtattcatacaaacctactagtcatcaaataaatatggaaaacatcccacataaaatatcccttttatggagttttataac<font color="green"><u>AGAATCAG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAATCAG</u></font>aatcctctaaacaaacctgtggtaaagaaatctgcttaactttgtttcacactctctctcaaagttattttaccctagcatt<br>tttttgttttctaaataatagctcataaaactatgattctatagaacaaattctaagaaataccgcattcactagtaaatcgagaggtttaatttagggg<br>aaagaaaaatttggaacagacaatggaataatgaagactatagaagagtagtgtgatcagctaaaaaaaactcacacattcaactcttccatccttttca<br>tttctttgcaagtctcaccctgctgctgcccagcagatgtcaaaatgagcaggaaaaccacattgctatacagagattccttaatggcaagctcttgctt<br>ccctaagact	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	174410738	174410739	1000570	0	+	239031; RIP_Alu_chr3_175_01	NA	NA	SINE	Alu	Yb8	cctcatgctgctgttctggaagctgtattttaagtcttttggcttagggccactatggatatatttctgagatactaagggtaccaccaaaaaagaatgt<br>tcggaaacctctatactaggacaaattactaagcccattcatgtttcagaatttacatctttaaaatagatgaagtatatcctgacacataagaaaccaa<br>taacaaacttggctatgtgttgtttatatttcatatgcttgttaggaggaagtatatatgtaaaaatgctgtgtaaaatactgcaatcattattgtctct<br>tttaaacaagttttcatattttacttcattttgttcctgaactcaacttgataataaaattattggtataaaaggttctatttgta<font color="green"><u>AGAAAGGTATGAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAG</font><font color="green"><u>AGAAAGGTATGAGT</u></font>gagattcaacatacagaatataaataccaaccagtaaaataataaatgataattaattcctctgtatcactttaagtc<br>tgtgatcaaagtagaagtctaagttcatgatatctcttgtggattaagacccagtaggcactgttcttccagtactgctcttagggccatcaggagttaa<br>catccaatcactattcaccaggatgttcttggctttaattattattgcttaactttggttcatttagaactgaatgctaaagtccatgcagcttgagtgt<br>atgaaaacctgttttatgacatggagagtttactgcattcacttttcttaattcatgtcaaactttcaaatgttttacttggtagaagtggaccataggg<br>tgttgcat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	180961903	180962216	1000571	0	+	32944; RIP_Alu_chr3_182_01	GAGATGGACTGGGAAGAAAGCAGG	GCTGCCACATCAGCTGTCTGTGG	SINE	Alu	Y	tcccttcagcaacctgtttagcctccctgtgcctcagtttcctcatctgtaaactgcaaatgttggtgctcatcttatgtccctacactgggttatagtg<br>cgatttgaatgaaagaactttgtgtaccacgtagaacaacacagttctcactatgattaggattaatcttaatattattgtaggtagttaagttagaaca<br>atagataaagaagttaaactttacctaagagtagaactggccttagttacctgactgaatacatttcaaaagttttatcaccccttattttaaataaatt<br>gaatagtacagagagatggactgggaagaaagcaggacctagaggtgacagagtcaaaccttattgcctgacccatgtagacactt<font color="green"><u>AAGACATGCAGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGACATGCAGCTT</u></font>acatgaatgagccatagagatatctaaattatttgaaatttctgcattacactttttaatttctttctaagt<br>ttgatacaagaagaatatatttgttttaaaatgaagagcatcattatttaaaagaaaatacaacaaccaaaataaaccatagataatcagagtgccacag<br>acagctgatgtggcagcagataataggggaggaaacctggggagggatagaaagagctcaaattcattgggcgcttatgttctagacactgtgataagtg<br>ctttctacacctggttgtatttagtcctcttgacaagtctaaagggtagatgctggtagtatcccattttatagattaggaaactaggacataagagaga<br>ccaagtgatttccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr3	181994859	181994860	1000572	0	+	239223; RIP_Alu_chr3_183_01	NA	NA	SINE	Alu	Yb8	acaggccctgatcccgaggagcactgagtgctgtccagctgctagaactggccagtgctgcatcttcattgcccttcctctggttcagttccctgtccag<br>aagtccagggagtgacagctgtgtttgggcaccgcgtagcaggctccagaggggcctgcactgcaaaacctccctgccagggctcagtggggaaggcact<br>tcttatcacagcagatttccatccacctgtttccttggccttcctctctcagcagagtatactatacagctttttaattttgtgggtgagaaggttcttg<br>ggacctttttcttattcttccctaagtttctcatcattttggatcagcatctccctactccttactgggattctcctatttcatccatg<font color="green"><u>AAAGAAAGGCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAAGGCA</u></font>ccacagaacaatatttgtattttcagagggctgagtttaattttgaggcaaaaaaattatacagtcttcaaaagatgtctat<br>gattatgaaattctcaccatgttgtaactcagatttttcttaaaattaaaaagtatacatttaaaatgttcatgtttttccagcaatcaatcttagcatc<br>actaaagataacctgatatgatatgcctcctgggaaatgcaatacatacattgattcacctaatttttttccttccatcatggtattacttatgtactgt<br>aaaagtcaaagtagttcaatgagttttgaaaaatctatgcacccatactactgtccccaaatcaagatacagaacttttccatcacctcaaaaattctcc<br>tgtgccc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr3	188304850	188305164	1000573	0	+	511;pAlu3-189706776; RIP_Alu_chr3_189_01	NA	NA	SINE	Alu	Yb8	atatgtgacagttccctgggagtttctcccctcctcgtaggtatttttagcaaaatagtccttaaacattgttttttttttttttaagttggagtctcgc<br>tctgtcgccaggctggagtgcagtggcccgatcttggctcactgcaacctccacctcctgggttccagcaattctcctgcctcagcctcccgagtagctg<br>ggactacaggcacgcaccatcaggcccagctaatttttgtattttttagtagagacgggggtttccaccatattggccaggctggtcttgaacacctgac<br>ctcgtgatcctcccacctctgcctcccaaagtgttgggattacagacgtgagccaccgcgcttgccccttaagtgttgtttt<font color="green"><u>AAAGAAAGTTGGCGCTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAGTTGGCGCTCT</u></font>actgaagactggagcccaagaagacatttatagggattgtttattttcatgttgttactacactcca<br>tggtctgcaaaaccagagtgccagatgttaaattctatcagcataatgcatctttaattaaatattatatacgccatacaattaataatgtggtctgttt<br>ccaaaactttattaagaaattaccataattttgtataataggctaataaaaaggcactgtactttgaaacagcctttcgtaaagtggttatatgatttgt<br>atctgttgaatttggaatttagattaagagattgtgggccagaattatctgatgcaatgtactcaggactttaaataagttgcgaatcttgtagggtcta<br>ctattatttggcttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LPP:NM:001167671:5/11	
0	chr3	191856098	191856423	1000574	0	+	pAlu3-193258024;22416; RIP_Alu_chr3_193_01	NA	NA	SINE	Alu	Yb8	gtatcttgggggacaatccaacctccaggtcttggttgacttacactagtcaacatatctcaagtctctggccatggtcagtcactgaagtgtggacaga<br>tgatctaaatcaggccaacgaaatgtaagatgtcgtctgggggattctaatagagaatagatgatataagcatgcaggttctgaaactactaaaggaaat<br>tctgcctctaagggagaagttatacatggaggtggacagagctgagagaactacaaagtaagcctcgatggtgatgctgtgtacctagatattcgagatg<br>aagcgccagtttggtttggggattctgtctgagcaaccagaagcatcctagcagatacagatgttcaaacaaatacaaaggctgtatt<font color="green"><u>GAAAACCTTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAACCTTTGA</u></font>gtaacttttcgtttttattgatctcaactcagtttttcttccacctccttttctgaacattc<br>ttcccaaccaagccctgttttccaagtatccatctttcattcaaatgatttcctctacttgagaggcctttgtcgtccccctttatcactcagcaaatat<br>ctgttctttttcaatcgctgtcttgcctctaatccctgatgatgcctttgttgcctcctcagtggtatataaaatcttttttgcatttatcatagcacat<br>acttttaggtattgcattatttatttatgtgtctgcctttgttgttgttgttttgagattgcaattcagtgtatgatgcctaaactcaactgagcctcta<br>gttggtatgttatgaataaaagaata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	192063195	192063491	1000575	0	+	pAlu3-193465121;13748; RIP_Alu_chr3_193_02	NA	NA	SINE	Alu	Yc1	ggcagaaacatcttccaagaaatctttgcatgttttgaagcttttagatttgcatcctctataaacctttcatcaaaaactatgttgccaaaatcaatac<br>tatggcctactaggtttattcattaattcatcacatatattccagacattgtgccaggcacttgcaatacagtggtagaaaggacagagatggtacctgc<br>catcatagtagttaaagtctaaaatagataaaagtaaccacatgtgtaatatgtatccatctttacagaccaggaaactgatactcaaagatactgtttt<br>cccaaggttataaagtcagctagtgaaaaagctaagctgtgaacctagattctggtggctacaaagctgtaaaatattgttgctctt<font color="green"><u>AAGATATAACATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>ATATAACATA</u></font>aaattctaatgataacaattcaagtagttgtgaagaaagtaggaaaaacagactataataagaaaatgtgaaaaccttacaaggaatgtt<br>ttagccaagtagaaccatcctgctcaaaaggtaaaaaatctttagtttttcttagataaaattacacacaggcaacacaagcacacttatttgagttgat<br>ttagatatgctcaaagctttgcacgttgttatcattaatacctaaataagaaaatatgactgcctaattccaaaaatattaagtggatctatagaaataa<br>acataatgtggaaagattttttttttttagaaattagggataaaaaaggacttgaaaaataaaatgattattttgtccttactattctctacttcaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FGF12:NM:004113:3/6	
0	chr4	9952310	9952540	1000576	0	+	2013; RIP_Alu_chr4_009_01	NA	NA	SINE	Alu	Yc1	ggaaataataatgagatgaacttccaaggctacaacactcaccacacaaaaagtggttttgagaattggatgtgagagaagcacccacatagagcccccc<br>catgggtcatctttcaagaaatgctccttcccctattcctaaaacattttctatttttcaaagggtttggatgtcctctgccttgcttggttctcaagca<br>atcttatgggaaaaaatgctcaatatcactaatcatcagagaaatggaaatcaaaaccgcaatgagatatcatctcacccctgtcaaaatggctattatt<br>aaatgacagatgctggcaaggatgcagagaaaaaggaaaacttaaacactgttcatgggaacgtaaactagtatagctgtg<font color="green"><u>AAAGAAAACAGTATGGAGA<br></u></font><font color="red">GATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCTCAGCTACTC<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAACAGTATGGAGA</u></font>tttctcaaaaaactaaaaatacaattaccattcaatccagcaatctcacc<br>tctgggtactactcaaaggaaaagaaattcatacgtcaaagggatacctgtactcacatgtttattgcagtactattcacaatagtaaagatatggaatc<br>aacctaagtgtccatcaatggatgaataaagaaactttggtatatatacatcatggaatactatttagccattaaaaagaatgaaatcatgtcatttaca<br>gcaacgtggatggaattggggggcattaactaaagtgagataagccaggcacaaaaagacaaatattgcatgttctctctcacttatatgtggaagctaa<br>aaaatttgatcatatggatgtggagagtgta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SLC2A9:NM:020041:5/12	
0	chr4	9956835	9957139	1000577	0	+	Yi6AH16;10548; RIP_Alu_chr4_009_02	AAGAATCAGGGAGAGGAGAC	GTTAGAGCAGGAGTGAAAGC	SINE	Alu	Yi6	atggtcaggcagttgttaaactgtctctctaaaataatagttggtcacagctggcaattattgggaaaggcagtcagtctcccaatagaaaaaaacctaa<br>aactggtgatcataagcttcccgacaagatctcaggagttgggcgagtgggctcaagcatatgcacgaagaggcaaaatggcagagtttacctggtatat<br>ggccttcctctgggaacttttgactggtgagggaaaaacgcctcaagtcagcatgtgcacaacgtcagtaaacacacggcgtgtgcggcccctcctaagt<br>gctggcaggccactgtgcatgcaaacagcccaatccaaggggaagaatcagggagaggagacgcaaccccctggaagcataacatat<font color="green"><u>AAAACTCCAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACTCCAAGTC</u></font>aaagttcaaaccgtgcacttgatctctcaagtcgctcccttggtgctctccaagtgtactttacttcctttcattcctgctg<br>taacgctttttaataagctttcactcctgctctaactcttgcctcagtctctccctctgccttatgcccctcgtcaaattttttcttctgaggaggcaag<br>aattgaggttgctgcagacctgtatggatttgctgccgcggacacctctgtctctcaaagattccagatttgggtcagtattaaccttttgagccccact<br>ggacattctctagggattcttattcagaaagtctgaggtagggctcaagcatctggatttttttttttttttttttttttttttgagatggagtttcact<br>cttgt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	494	176	NA	intron:SLC2A9:NM:020041:5/12
0	chr4	17202766	17203066	1000578	0	-	689; RIP_Alu_chr4_016_01	NA	NA	SINE	Alu	Yb3a2	tcacctattctttctatattgggaaattcaggaatattaattctacaaagttcattatcattagtgagacgtttagaggctatctcataccgcttattct<br>ttctatattgggaaaatcaggaatattaattctacaaacgtcattatcacttgagtgggaaaaaggtgtaaagtgacaacaacctatgaatattgttgca<br>aacttaataacacctcaaaattcagcagaagcacagttgttggaaaatgacttccactggacccaaaagaacactagaaatgttttggaatcctcaataa<br>tgtcaggagaacatggccttcacaggagatcaggaactgattagagaggtaataggatgggaaataatatgacattataaattcaaaaggc<font color="green"><u>AAAAGGATA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAGGATA</u></font>agacataaaggcaacaaaatgaaataaggagggatcaggatgaggaaagggatgattaaaagaaagctaatattgcaatcagagaattaa<br>aatctgtatttgaggaagtaaagagtagaccttagtaaatcaaattaattatgtggaaattaaacttcagatgcattctgagacagagagagattatata<br>taagtggaggaaaaaaaatcatctgtatatagttaagttataggtaattttattttcttttttgtttattagtttcaaaaacatttcttctataataaat<br>aggtattaattttgaagcagaaaagttttttttctttccttcaaaattgtgtttttaatatacatttcattcctgggtacctatccaatgcaaacttcgt<br>t	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	23721683	23721985	1000579	0	+	238456; RIP_Alu_chr4_023_01	NA	NA	SINE	Alu	Yb8	tcgatatctaaagaaagctggggattgatcgaaactaagtagttgaaaatgcatctctatccatgacttgaaccacaaaggtggtgggaggcggggtaaa<br>ggaaagagggataggaacttggagcaggggcaagaaagagagaaaatttattgaagtagagaaagataattggtatctggaatttcctctgcaatttaag<br>gctgtcaggccagcatcttgcacatcttcccacattgaacacatcgctattacggaagcagagctctattctaggatagattaaagagctgataggtgaa<br>accagctgcagagagcatctgttttgtttttgtttttgtttttattttttttttatttcagagcaggagtccttgcagaact<font color="green"><u>AGAAAAATACAGATTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGACGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAAAATACAGATTCCA</u></font>gagttcttaggaggttgtagtctaggagggagttttcacaaccttccaatctttaaagtgcactgagctcaatgaatcc<br>ccatgagtccttccaacacgtgacttgccatagcaactttatcttccaaaatattactggggtgaaaagacctggagcacagcttcacttttacccaagg<br>tatttcctattcattgccttattatttgactaacgcctgggtggctatgtttgcagatcctgtcttctaggctaccgtgaggagttgctccattacttat<br>ttcctaaatgaatagaactacctcttctcagtcatcacagcctaagcaaatggtttgaaatgataaacctgccaaacagcttgtggtcacacagctgact<br>tgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	36469922	36470237	1000580	0	+	pAlu4-36304466;238945; RIP_Alu_chr4_036_01	GAGGTCTTGGTTGTGTCAGTGTTG	GTCACTGTCCAGACAGACTTATGTG	SINE	Alu	Ya4	aatgcttaatgtcttattcaagccattttactacagtctcaattagtgaatatattcataaatggtggttgtacggaggtcttggttgtgtcagtgttgc<br>tactaagttatgagatctgttcaaagacaaagaaatattgattttaatgtttcagagcttttaagactaaaattttttggagctaaacaatatattttaa<br>caagcaaaattttttaatttttaattcagttttcaatttttggtcaatttcatattaacaaatatcttctatattaattcaaaggattaaaaatattttt<br>caaattctttaaaaataatttttgcttattttaacaatttggtctttggtcctgaaacagtaaataattgagtaagtggctat<font color="green"><u>AGAAAATATAACGGGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAGAAAAAAAAAAAA</font><font color="green"><u>AGAAAATATAACGGGTA</u></font>ggtaaaggaaaaatgatttacttcttgtactagaaaagaaaagcttttatgaaatagcacataagtc<br>tgtctggacagtgactatttaagtctatcatcagaatatttccagtgccattgatctaaaaattagagatctagctttatttgtgaacttcgacaatttt<br>tagcaaatgtgttatattttattcacaaagtttatctgagagttacatacagtaagaaatacagtaaaatcagttttgtcaaagtccactcttggtcttc<br>caaaaagatatcatctctggatgtcaagcatcctcttatactttgtgttcaagtgaatattagttcaagctgacactaaggccagagacatatattgggc<br>agaaaaataaaaggga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	36842761	36843089	1000581	0	-	16933; RIP_Alu_chr4_036_02	NA	NA	SINE	Alu	Yb8	acgttgggttagtaacgagacgagtactctagagaacttttgcatttaggacctctatcatgttaccgtgtgaacaagcatgggctaggccccatgtaaa<br>tgagatgagccatctcagccacacgttttggggtggtttgttatgtgacaaaaaaataatatgcttggattaagtagaaggaacaaaccctaccatacta<br>taaagaagggcactacactaaaaaaaaattcattttcctaatcaatattcaagcctttatatactttcaaggtcaatgatagcttagtaatcatcaacct<br>actcttgtggttactacttaacaaattctctaagaatggtgaaatttttctttctagaatgttcaggcattaaacattctccattt<font color="green"><u>AGAAGATTCATCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGATTCATCCA</u></font>aaagtgaagtaaaagggaaaggcaacatcttttttttttttattatactttaagttt<br>tagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccgtgctggtgcgctgcacccactaactcgtcatctagcattaggtatatc<br>tcccaatgctctccctcccccctccccccaccccacaacagtccccagagagtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccac<br>ctatgagtgagaatatgcggtgtttggttttttgttcttgcaatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaa<br>ctcatcattttttatggctgcacagtatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	39031091	39031358	1000582	0	+	238899; RIP_Alu_chr4_038_01	NA	NA	SINE	Alu	Yc1	aaacaagttgctttatttttaacttaggacttcagagggcttattatttcgaaatcaaatctattaaacatcatgagtatattatttctcattaagattc<br>cttttgaattcatttcacatgttaaagacagggtatcagtgaataatttataagtaaaaattattttataatatttatcttagaaattaaagtgaataga<br>acatgagaaaaaatgaaaaaaaaggacaagaaacgaatggagtaagactaggcaggggaatttcacaaggttaattgcagcacttctagagcactcttag<br>cttaccatcaaataattttactagctattttatttagcattagttgtcaatttaactcatttcataggtcaactattattgtgatt<font color="green"><u>AAGAACTAATTTTT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTAATTTTT</u></font>aaaaaccaagacaattat<br>gtccaagttttcttcatttaatcaatatgggactatattaaatgaggctataaaaagatgttactggtgatccataaaccattagaaaaaaataatggtt<br>tttattattattattttattattattacacaattgcatgtgtataacattttgcctagtaatcaactttttgtttatggcagctctgtgcaaaattcctt<br>ctaccactaaataatgtaaaagaagacagtggtttttgaacatttttgtttgttggccccaagtagggttcctttgaaacaaaattccccaataaatcca<br>cctgagtgtggtggtatgtgcctgtagtcccagctgcttggggactgaggcaggaggattgcttgagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TMEM156:NM:024943:1/7	
0	chr4	41011265	41011266	1000583	0	+	238217; RIP_Alu_chr4_040_01	NA	NA	SINE	Alu	Yb8	aatgataagttaatggatcatgaggcgcattgccacacccatctagacttgggacttggttttctctgtgtataattctgcttttgtacactttagcaat<br>gaatctgattttgaaacagttactacacaagatccatctagtttcatactctgtgtcttcaattttattaaatcccaaactaaacataaaattacatgtg<br>ggtaccactgaaacctgtacccaggaaggttcaaaatgatgcatcttttcaacgttttcataaagcaaacatgaaacactaagtgattaacagagagact<br>atatacagtgtgaccaacaggtatttatttatctgagccatcatgcttactacctggggccactgagggaactgtatctttga<font color="green"><u>AAAAAAACCCTAACTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTGAAAATACAAAAAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCANAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAAACCCTAACTAG</u></font>gcagtagcaagatacaacctttcttttagaatcagggccaaggcactctttaacttttctaaactcctatg<br>aaaatagtcatttcacagatgcttttcctttttcaaatagcctcttgttttcttaaaggacagactacagaggaggaaaagggcagccacatattgtata<br>catgattgattgtacaaaaagaagttactaaacagctggagggggcgattcagtagtaaaggaaaatagaaagtagtcagtctctaggttagccattgca<br>ttttattgtataaatagcattctaacttggaaaggatgcccctgaggtagaaatgagtctatttttctaggctccccaaagtgcagtctacgatccaaag<br>ataattgcatca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:APBB2:NM:173075:6/17	
0	chr4	41445213	41445294	1000584	0	-	13233; RIP_Alu_chr4_041_02	NA	NA	SINE	Alu	Yb8	gtttacagaaaagagtttagccattgcttacaaatactgtaaattaacagatcttcgtttctcctaggaaatggtacttttggatcacatgtgaaggttt<br>aaaaaaatacagctgccctggcttcctgaaatctggaaagctttacagcatgaaagaagaatggtttcattggataataatccatctgcaataagagcaa<br>agtccatactactattaaatgtgtttatccactgattcatctgaatattccttgatttgctttaagtaccataatcaaatgttgttatttaattcaacaa<br>cgattcaggaaaagcaatttggaatctcacaggtggtctgaattcactgtgttggttacatttgatgcacttcccagagcag<font color="green"><u>AAAGAAAAAAAACATCCA<br></u></font><font color="red">GATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAAAAACATCCA<br></u></font>atatgatttttttttctctttaccttggagcataagacatgaagcttttatgagggaaatcattccccaaaagtgaaactgttgcttgctagcttatgtt<br>tccatttaaacaaatctctaactaaacacacatgaaaaatgataggacctttcctttgataaaaatctagcatctaatattggcaggcaaagtttaagtc<br>acttcctgaattgctaaacaaacagctacacaaaagaatcacacagtacatttgtatgtttccctttcatttacttagcaattcctttcttcatattaaa<br>aatcttagttttccagcaattattgtttaccctggttaaatgactgatgtataataatgtaattacatgtgatacaatagag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LIMCH1:NM:001112717:1/26	
0	chr4	44509395	44509695	1000585	0	+	Yg6AH44;9369; RIP_Alu_chr4_044_01	GAAAATTCTGGGATGATTGA	TGAAAACTACCAAGGGTGAG	SINE	Alu	Yg6	acccacaggataggagtcaggggaggaaggtattgttgttccttaaaaggtgtctatatattactcaaattgtgcagcactgttctagtttgaagcagaa<br>tatggtctcagtgtgttttagccttgcatgaccttttgtttttaaaatgactctttttcttttcgtctttgctatttaccttggaataccttcctacaat<br>attttacttttgtggctctcatgatacagacatggacttttctctctctggtatataccatctataaatcctaggattttttactcatagaggctgggca<br>ttaagagtacacaccagatttaatagatagtgaaaattctgggatgattgatgatattcagaaccagaagaacttggatgtgt<font color="green"><u>AGAAAAAACATCAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AGAAAAAACATCAATAT</u></font>caggaaagcagggaagccccagtgaagacctcacacttaatttttttattcctgctcctcacccttggtagttttcatggca<br>ccttcaggtgatgaaaatgaagaaagacagataaaatatttaatcatcaaagtttataaaacttgtgtgaaagtttgctttactgattcaggcttaagac<br>aggatattatctacttcaattagtttggaatacccatgagggcagtaaccacatataccttgtttacagttgattccaacactaagaacaatgaccagaa<br>caattgctcagtaaagactgtatttatttacctcattatttctagtatattcagcgtatgagggtaagaggtggaagatcaagatatcggtatctgtaaa<br>g	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	464	146	NA	intergenic
0	chr4	53222442	53222443	1000586	0	+	17800; RIP_Alu_chr4_053_01	NA	NA	SINE	Alu	Ya5	gtagaccaatgtgttgatgactcacctcaggtttgtgtattgcattgttttaaaatatttctctttgtgcctcaaatttagaagggaactcaagacagca<br>gtgaggaaacaagaaataggagaaaatatttgtttgcatttggcaaaagagaagccgaaaaagagcctgggctgttgcactttacaactttgctcccttc<br>ctccacccctcgaattggggttcatttataacagggaagcagcttgacaagaagcaaatatgacttatctgtaatattttatttattttaaaaaagaaag<br>aaagactagaaccaaatctgactaaacttaaaacttactaattttgcatggtagaaagatgaatgtttgtcatgtgggtctttatt<font color="green"><u>AAAATGTATCTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAATGTATCTTTA</u></font>aaaaaggttctaaaggaaaaagaagaacagaagattcaaaacatttgatcagaacatttggtaccagcccttgcattaccatgtca<br>gtctatgtgtccctgagcaagttattgaagttctctaagccttgtgatcataagacctgtcttttaggatgtggttaatattaaatcagaatatgtatgc<br>agaacacccagcattggacctagattcatatgttcttaattcatggtggccactatggctactttctgatttcccaaaatgtgtctgctacagttttaaa<br>tgtatattctctccgaaattcctgttgtaacttaatccccactgtggtggtgtattagtctgtccttatactgctaataaagacatacccaagattgggt<br>	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	58148031	58148342	1000587	0	+	238724;Yb8NBC71; RIP_Alu_chr4_057_01	GTGCTGAGCGCAATCTTGA	GGACCAAGGGGTGCATTTA	SINE	Alu	Yb8	gatttgaaaatgcattttgggttagcaaccccatttccccctgatggggggataagggacgtgaataccacttttgcactcactggctgatcgtgtgtgt<br>atgtgtgcacctacatgtgtggtggagggatgggagggatgggagaaggccatgcaggaggaacgtgagaaataagaaggaacataaatattctcccagt<br>cctttggaaaatgcttttgtttctgatttttacccttggtgcccaatccaagcaggagtgaggaaagagaaatgggcactgagtgggagaatgatgaaaa<br>agatggaggaccaaggggtgcatttactctttgtctttatcactagcatctaatatttgcctctgaaggctaaatttcaattcttt<font color="green"><u>AAAAAATATTCAAC<br></u></font><font color="red">CTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAATATTCAAC</u></font>ttaattttaacttttatcttagaggactcagctgtacgccacatatttaatctaatcaagattgcgctcagcac<br>tgctttcagtccttgctgagagctctattgagtcatttattaactcgatgacttaaatggaattcacaggccagacacaaatctaagagagaggaggagg<br>ctaggctcaggaaggaaaggggaagagagttggcttatttcaccttggtaatagaaggccctggacaatataacaatggtctcgagacccaggaatgttt<br>gttatgaaaaggatggagaccactgtttgccatcagtatagagtggacaaatagttcattgttttattttgttgaattttaacagtcccttagaggctgc<br>tcctgatcaagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	61	493	167	NA	intergenic
0	chr4	69036908	69037214	1000588	0	-	16457; RIP_Alu_chr4_068_01	NA	NA	SINE	Alu	Y	aatgtgtctatgtctcttttttctatgccatttttataaaattatgagacaagcagcctactcaacacagtagaagcttaatatgctgaatcaagtggca<br>cactgatagtacaagcgggggatctttatacttgcatgcttgttcatttgtgctatgcactgcttacatccacttcctcatgagaactgcactggaagag<br>ctcaggtttatatttaaaaaatttttaaagatttatacaaactttaaggttttgcccagaaaaaatattgtcttttaataatattttccaggttaaggtt<br>tgttaaggaataataaaatacatgaatgagtgaaatccttcttagtaaatgctaatgaaaagaacttttcaaaaattttattgttt<font color="green"><u>AAATACTTTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAATACTTTTTCTG</u></font>gattccaaaaataagattttcagattatctcttgtataaaagtaaatttgaaggaatagaaaaaccccatacctctaaa<br>agtagctttttcttcttggttctgtcatattttctttgactaaatattagctctggactaataaaatacttttctggtacatcttccctgaagggctcct<br>aagggttttataccacagaggaaaattctaactgaaatactgacatggggattaattacaaagagacattagtgcttgtatgtaatatagtctggtaaac<br>aattcaaaaatactactaggtcataaaaattccacttaattttttttgcaagtatattatgtttatgaacacctccaggctgcttataactcacccacct<br>cttttta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	70413675	70413676	1000589	0	+	5298; RIP_Alu_chr4_070_01	NA	NA	SINE	Alu	Yb8	cagcagatgccaaaactgctggtatcttgatctaggactttttagcttccagaattgtgtgaaaataaatttctcttctctatagattgatgaatctctg<br>ttatttttttgtaacagcaaaagtaggttgagacaatatgtgaatctccaaaagagaatatttgaaataaaataagaatgtgagggtaatagatactaga<br>tccaaaatccgattaggaaacaaaatgataaaagatataggtgagatgttaaattaatttgaaataacacttgaaagaattgataaataaattagaaaca<br>gaaatcaaggcttatggcattaaagtgaatttactaattgaaattatttaaggcaatctcaatgagctaagaatagtaaaaattaattaaaaca<font color="green"><u>AATTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATTAG</u></font>ataatacagaatgaggatagtcaaaatattttaacatagggacaactgaaatctgatgtcccaaaagcagagaaaaaatg<br>gaactgaaaattatcctaataatcaaacaaaaattaatttctagcataaaaaatgaatatattaaatcttggattagctgtgttataaagacacactatt<br>agcctggaaaatgtataaaatatataaaaatatattaaaattaagcttctgagtttaaaatgtaatgatttttttctagtcaaaatggaaactttaaaaa<br>aaaaatatttgacagatcttaaaaactctttagtagcatttaaagctggaagactgaatattatttacgcagttccgaagggaagaacgtgagagctaag<br>tatatgatattaag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	72829644	72829956	1000590	0	-	pAlu4-73230177;238850; RIP_Alu_chr4_073_01	NA	NA	SINE	Alu	Yb8	aagcaaaatataaacaatacaagaaaatcaaactcacagtcagtcccatgtataatcataaacaatcatctaaaaaaaattagaaaacttttacaaggaa<br>tataaatttaggttaacatacaaaagtaagaaaagccatgttaaaggtgagttaaaagtgcaaacagtattcagtaaaattcagtacttttttattttaa<br>aaactttgcaaatttacacaagaagaaaactttcttataatgtctaagggtatctaccaaaaatgaaaacacatattacatatagtcaatagtaaaagtt<br>aaaaatacattgtttaaaatcagtcacaacacagagattcagtttttatctctactattgtacagaggttctaatcaatgtaat<font color="green"><u>AAGATTACAAAAATAA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAGTTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGATTACAAAAATAA</u></font>gttacgatgaacaaaaatcacaatgacgtaagaaaaatataatttgtagattctataaagaaaatcaaata<br>ataacttctatggagaaagtattagaattaatagagtttagcaatgttattgtgtataaaattaattacaatagagagttactataatccaaactgttta<br>ctctaaaatctaagtgtactttgaaacgtaattcagaaaagattgcatttataataacaaaagttagttccgatcctttataagttgtactacatgatat<br>aaaaggtaaataaaagttattcagttcatttaataaggctaggaaactgttgatattgagctcacatcagaacaattcacacacaaaaaggatcatttca<br>cacacatatatag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	80205743	80206056	1000591	0	+	238695; RIP_Alu_chr4_080_01	NA	NA	SINE	Alu	Yb8	aattactaatcatattaatttgaaaggctctacagaggttgtgaccctaagtaacaatcccatgtccctctcagggctatagtgtcccaccaaagtcaat<br>gcttaaccatggctctggagtaatggaaggcaatatgaatcagtataaaggagtctcatcaacaaaatgcttttctatttacttcttaaatcgaatcttg<br>actgtcatagggtatcttcctctgaggtagagcataaattttgatatccatgtctatcaatcaagtttgattcaagagtatcaggttgattatttttaaa<br>aaatctaccattagtcatcataggtaacagcctctagcataacagattctagttattgttgtttcttgaagaatgattgatgtctt<font color="green"><u>AAAGAATGATTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATGATTGAG</u></font>gtctttaagaatgtgcatactcagtattaaagtattggttaggaggtaggtgactaatttagcacatttttt<br>gaaagagtgttggtagattctttagtggggtgcatttaaaatcaatcagatattacactgtagcttttgcagcattggacagaaccagtagatggtggtc<br>ttaagttgcaagttgcttttacgctaacacctgtcagcatgtgaaacaactactgctttcaacaaaatgttgaaattcacctttctatttatcagatgcc<br>ataaattggatgaaggtggcacatgagagcattttgaagtgacatgttaactgttgtttatttttcaaaagcactgatctgaaagaacacacagactatt<br>catcacagcacttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	81991531	81991836	1000592	0	+	3330; RIP_Alu_chr4_082_01	NA	NA	SINE	Alu	Yc1	gcttgcttattgcatcctagctactgcgtggagccagtgacccctcccaggttaaccagaatgtgaccttgctactgtgcagaaatagtttttaggcagc<br>cctctcttccagtgattccagagaaggttgaagaccatagagttttgtctttctctttactgtgaactaattatccattagtgaggctcttcagtggaat<br>tttgaagttacatttagatgttcacataatctctctctctttctctctcctcctctttattgttctctaagagaaaataatctgcacatccctgttctca<br>gcgtcatttattcctgcccaaaaagaattctgaacgattgcatttgtctggtgacggctgttgctacactgaaataggaaacatc<font color="green"><u>AAGAAATAGCTTTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAATAGCTTTAC</u></font>tctttaatctaatataaagtattaaatgccaaatggttctagaatggagttccttttgatcttatgttcgattaaaact<br>ttttcaggaaatagattcagaggtaccttttgtcacattatttgttgttcagtcacagaggacataggaaatttagcatttgtcatctttttctatgctt<br>tgaatacttcttgaatttacacagcttgtaacaaacccatcaaaccctttgaatctagaaatatttgactgaggacaggaatgtttagaacactctttct<br>gcttaaaagcaatacagataaaggagaaagagacagagagagagagagagattccatcaatatctaagcacagcttcaaaattccactgaagagcttcac<br>aaacag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	84221720	84221993	1000593	0	+	290; RIP_Alu_chr4_084_01	NA	NA	SINE	Alu	Ya5a2	taattggtttttgaaaccaaagtgtatgagaatctacttaagaagtatactctagctattctttttcttactctaaccaataaaaattaatgctgtaaaa<br>gaatcacactgatctcacatggtatgatattttataccaacccacatacctttgatagcaattatataaaggtatattttgctttagtgaatgtgttacc<br>aagaattatgtctttttagagtaaataatttaaatgcgttgagtggatcttgatatgtcaagttattttgaaatgcaaacttattctctaagataactgc<br>tagtttgtgttcacatccttttgctttagactcttagggtgagttatactcatattagtaagtattcatacataaatttcctgaatatt<font color="green"><u>AAGAATTATTA<br></u></font><font color="red">CACTTTGGGAGGACGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCCATCCGGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTATTA</u></font>gaacttgatatagtt<br>gactttgtcttttgctccctgtccaaactctctattctgataaacaccaataaatttattgaaagtttggaatgaacaaggaaaattacttacttggaaa<br>gtaatccatgaggtcccaaaggtcttagaaggtatttatccacttgcttgttagaaaaaggatagggtaaccgcaagtacttggtgacattatggaggtt<br>tatggcatacagagttaaatctccttctttataccttggactaaaagcaaagaggttaacttaatagaaatatgtatctaatttaagcaattaaaaactc<br>aattacaaatgtgatcctaagtattagtatccataatgacaatccataatgcatcctaagtattaggatccata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:HPSE:NM:006665:12/13	
0	chr4	86660770	86661078	1000594	0	-	pAlu4-87053447;238106; RIP_Alu_chr4_087_01	NA	NA	SINE	Alu	Yc1	gcctgaacccaggagtgggaggttgcagtgagccgagatcaccgcactccagcactgcagcctggacgacagaggaacactccgtctaaaaaaaaaaaaa<br>accccaacaacaacaacaaaaagaatatcccagatcggaggtaggtactttcaatagaagttctcctctgagaagaaagcatttaaatagagatttgaat<br>gataagaaatagccaaacaaacaaacaaaacaaaacccaaaggcatgtactctgtaaggaggggatccagcatgtgtgaaaggccatcgatctgaaaaat<br>ctgtggacattcgtgaactatgtggcaagtctgtgtggctggagcatgggagcaaggggcgataggggatgggatcctgtaggctat<font color="green"><u>AAGATTGAACGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGATTGAACGTG</u></font>gagttttcacgatatggagagtgtaatgggaagctgttgaaggctttacacagccagttagcacaatttaaaatgatc<br>tttctggaatttggaagaaaatggattctagaaggattaagtgcagaaatctaacagaaagatgatttggtatacatgagaagaaacaggagacagagag<br>aagaaaaccgagcagagatatattttggaagcagaatcagcaccactggttgatgattggatgtcaagtgtgagaaacagagaggatgcaaggataatgc<br>cctgacttatggcaagtcctaagcttttcgttcagttaaatgcatattgaccacctgaagatggaaatgcatagaagggttctgggtagactcaaattac<br>aaagcctac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	87066369	87066535	1000595	0	+	15570; RIP_Alu_chr4_087_02	NA	NA	SINE	Alu	Y	atccagaaactccatgtttgctttcaggacaaaaataaaggaatacaaatgttaaaaacttacagtgagctgctaaataagtacaactctatgaacacaa<br>ttggataaatttgcacactatggacacagtagctaagtctaagtttctattccctacccggtaatatgtttaccaaaaaaaacccaaaaaaacaaaaaag<br>atatcaatgataaagcacttctaccaattagttttatcctccttaaaatacaacgaagcagaaaagtggcaattttacaaaaattactctgggtccagtg<br>atcttttctagtatttttttctacttttcctttcaattgctttttcctatgtagcacaagggtcaaaagatttcttggtccattc<font color="green"><u>AAATTTCTATCTCTA<br></u></font><font color="red">GCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT<br>CGCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACACCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATTTCTATCTCTA</u></font>tttgatgattttagaaaa<br>ttagtgatgaaatattatacagcataccaaacatgtgttattgtaagcaaaaatagtatttctcaatgtttctgtttcacaaagaattactgcttctttt<br>caaagctacttctatatgtaccatcctgcttcctccgaaattgttctctaacaattatttttggtttcttgagtctctccatttctctctgggaatctct<br>cagctgcctgcttgatgttcctacatctctctgtctgtgtgttctctcttcctcttcctcattgtgtatctgtcatctatttctctctttcttgctattt<br>ctgtgtatctttcttcttctgtctctctgtctcattctcctcttttactctgtctcagagcctctct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MAPK10:NM:002753:4/14	
0	chr4	89037687	89038004	1000596	0	-	pAlu4-89430373;238956; RIP_Alu_chr4_089_01	NA	NA	SINE	Alu	Y	aaccccccgcgctcaagccatcctcccacctcacccaagcagctgggactatagacacatgccaccatggctatctaatttttgtattttttgtagagtc<br>ggggtcttgccatgttgcccaggatggtctcaaactcctgagctaaagcaatctgctgtggcctcccaaagtgttgggattacaggtgtgagccactgtg<br>accggcagacactacttaattttctggtaactatagattgcagctttagcccttgagtgggtatcggtcaatagagtggttagtcctaaacctgacttag<br>atgggccaaaatttctaacaatcttggacagcatggttctttttatttcaaattgaaatgtgtgatttttaaaattttagat<font color="green"><u>AGAAATGTGTGATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGTGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGTGTGATTTTTT</u></font>ttaatggcttgtgcggtctgcatcattttagatatatttggatatgattacaaatgattcccta<br>tgatcctaaatataattttagatattcattggccatgtttcttaattaggttttaataaaggggatgaactaagagtcagacttcaggccacgctgagtt<br>cagatgatctcatcatccaaagctgaatggttcaggtgtgctgtgctggccatgttctatcgagaatactgctcaggggatttgttctctatttggaatt<br>acagcagcacagcagttgatttggatttctgaattaattaattaattaatttacctttgagacagagtctcactctgtcgcccaggctagagtgcagtgg<br>tgctttcagagctcactg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ABCG2:NM:004827:7/16	
0	chr4	91382210	91382518	1000597	0	-	7235; RIP_Alu_chr4_091_01	NA	NA	SINE	Alu	Ya5	tcctgttacttagtagagtgccaggcacaaaagaggcactcaataatctttggtaaatgaatgagagactgaagaaaagtgaagtgaggcatgggggaaa<br>agaaaagatgctagccaagcacaggaaagagtgtgctaaaaggcattgagatatgagaaaatgttatatatatattgagaaatggaaataattcaatgtg<br>attggggcctagacaagacacaagacacaagaagttaaggaagactgagctggaggcataggtcatcggcaataccttaaacaccttctaaacttaaaaa<br>cttaaaaacattagtatttgatcctaaagttaatgggaattgataccgatcattaaacaaagagcaacatgatcagctttatatattttt<font color="green"><u>AAAAATAGCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAATAGCC</u></font>tgggcaacacctaagtacaggaacaagactgagtgaaaccactgacagcactattgaaataaacaaagtgagaaatggtga<br>gggcttcttattatttgaagtagcagtgtagtggactagaggggaaaaagtcgagtgcagagtattcagaaatgttaacacttcatttcaaatatatagt<br>cacagtctatatctacttattttctttattaagatgaaatacaattctcagcacattacaaaatcagaaaatacagccacagtacagatgggtgtgagag<br>aagagccatcaaaagaagaaagcaaagaccttcaaattattaggagacaatttagtttacaatttaaatttaaaagtattctatacaaccatattattta<br>aggctaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FAM190A:NM:207491:4/8	
0	chr4	93393079	93393384	1000598	0	-	12299; RIP_Alu_chr4_093_01	NA	NA	SINE	Alu	Ya5	tatgcacctacaataatgtctaaaattaaaatgtgtaaccacaccagtattgatgaagatgtggagcaactgaaactcttatacattaccagtgggaaag<br>taaaatgttacaactcatttaaaacaatttgaaactttcttaaaaagttaaacttataccaaccaaatgaactcatcattccattcctaggtatttaccc<br>aaaatttcaaaacatatgttcctatacagacttaagtgtaaatgttcatagcagctctatttgtaacagccaaagctgaaaacaacacaactgtccatca<br>acgtgtgagtggataaacaaatcatagtatagccatccaatgaaatagtataaatttataacaagcaatgaactattgacattcat<font color="green"><u>AGAAATATGGATAA<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAATATGGATAA</u></font>atccccaaataagtatgctccgttaaagaaacaaggccagaaatgcaatgtagattgtatgattctgtttatataagcct<br>gtataaaatgcaaactaatacagtgaccagaaaaaaaccacgttttcctgggtatggaattgcagtcaggaagtgtgggtgagaagaattacagagaagc<br>aagggagtttggggggaatgatgactactttgtgtttacaatttttaagtatgtcagtatttatcaaagtgtacaatttaaatttgtttaagttagtata<br>tgctggtcatacaataaatattttaaaatgcatgtgtaaattatttttattatttcagttggttgtttatgtttattattaaaatgttaacagttagagt<br>taaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GRID2:NM:001510:1/16	
0	chr4	97897211	97897531	1000599	0	-	12119; RIP_Alu_chr4_098_02	NA	NA	SINE	Alu	Ya5	gagaaaaataaaaacggacaaaacatctttttagtttaatagcagtattgtgtatatgagagatgaaaatagagagggtagaggcaaatgagagagaaag<br>gacctatttggtcttaaattttacatatattttataagtaatcataatctttctgtttttactctagaaacagaaacagaataggattaatcttttattt<br>ttgtaaatgaaatattttcttaatcttttattataagaagtcattgtataatgtttacaagacttcgactgtttctaagaaatgttctacgaatatgtat<br>tttaacttggtcctacctgtgtgtcaaattatagctaaaagggaggaggaagggttagaaaagaaaaagataacttgtgaagact<font color="green"><u>AGAAATGAGAGACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGAGAGACTT</u></font>gcgtgtactttggattcgtattaatagtctaaaagttaaattatttacacatatttcgaactct<br>ttaaccatgttctattatttgaactcaattatcatcgggtttaagttgggttcttattaataaaataggtcccttcagaaggcacattagtgctttaagt<br>caagagtatattaatagttttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaatggtgaaaccccgtctctacta<br>aaaatacaaaaaattagccgggtgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggagct<br>tgcagtgagccgagatcccgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	98110657	98110970	1000600	0	+	pAlu4-98503335;54298; RIP_Alu_chr4_098_03	GTCTTTGCTCAGGGCAGTTTTGG	GTCTACGAGGTATCTCCACTTAG	SINE	Alu	Ya5	gctcacagtgtaatttgatcctgatccgtaacatcaaaggtgcttccatctaaaccctgaactctgccttctgatgaagatttctgcaattactatagaa<br>gagggtgtgcgtgagtgcgcacgtatgtgcatgcatgtgtgtgcacttctatttaaaaattattctaatgtaattttaatgattacatagattgcctatg<br>aaataacaagtgaggatttttttactaaattttataggatacataaccaaagtgagtgttctacttcaaagagttcccttgggggaacacaatttattcc<br>atttcactgtctttgctcagggcagttttggaatgaaattcctctgaagaatttgccttttaaaaagaaaaagaatttgcccttagaa<font color="green"><u>TTTGCTGTAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAGAG</font><font color="green"><u>TTTGCTGTAGAG</u></font>gaaaattgtcaacctcattactttgtagtcataagacatgctctcttatcctgaacctttattttctcttcttt<br>tcccttcctctatcctaattttttgatgttaagttctacaatttcctctttacactcaattgttttttgcaaaacttattagaaatctaagtggagatac<br>ctcgtagacaggtagataatgagagatgccatgggttttaaatgtaaaactgggagtcagaagcatgccaggtatttctgagtcatgagactgccttaga<br>tcatcaagaagtcaatgtatagacagaaaaagacatgagactgtggtcaaaaacttgggaactttaagatttagaagacatctgcgagaagagaaacaag<br>ccaagaagactgag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	98133391	98133689	1000601	0	-	12977; RIP_Alu_chr4_098_04	NA	NA	SINE	Alu	Ya5	ctgcagcaaactgattgtgcactgcaaactgcaaactgattgtgccactgcaccccagcctgggtgacagagcaagaccctgtctcaataaataaacaac<br>aaacaaacagacaaacaacattgatacaatatgatacaatatcgagcatttggtgccaaacagcaggcataattctgaataacagaaactgtttagtccc<br>aatactactgctgacagtacctctagtgtccttattcaaataaataatcttttattagatgataatagcaaatcctaatacagtaagtcttcacttagca<br>ttgtccataggttcttggaaactgtgactttaagtgaaacagcagaaaaggaaaccagttttaccacaggctaattggcataaac<font color="green"><u>AAGAATTAAGTTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATTAAGTTCCT</u></font>atggcatatttatggttacaaaaacatcaccaaactaaataaagaccaaaacactactaacactgaacatagaaataattgtaacc<br>tgtatgtacatttaagaaagattaataaaaacaagtaagatgattatttaagttcaaggtagtagatggacagtgcctatcccagcatctcaggacacca<br>ggtggaaactgacccttgacaggatgccatcctcttgcagggtgcacacacacacacatacacacacacccatactcactcacttggactgggaccatgt<br>agacatgtccattcacccaacccagagaaaacctatgcagacatggggagaatgtgcagactccacagggtcaatggccctggctgggaattgatttct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	100023051	100023377	1000602	0	+	238927; RIP_Alu_chr4_100_02	NA	NA	SINE	Alu	Yb8	tcacaatggcaattaaatttccccatagttttggagggaacattcaaatagtaacatctagctagaacagcctgtctgttggcagaatgaagtagaacag<br>tttagtgggaacaaggatacaagtgtatttttcatggaccaaatacagactctggaaaggatacggttgtggatcatcgggaaaagaacttcacgaaaga<br>gatagatgcacagatggatagtgaaggtcaccctggtgaaagccaaggactgaatgcaggtcttaaatggccagttgtggaaagaatcatccttataaaa<br>gaattgagataggagatctctaatagaggaggagttctctaatagaggaggagttctttgtgaaacccacagaaatcccccaactcaaaaaa<font color="green"><u>AAAAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAAAACC</u></font>aaaaaacgtagtatctaaaaggtagggcaccaatatcaaattgcaactgtactggccatatgcaa<br>tgtagagcaccaatatcagatcgcaactgtactggccatatgcaatgtagtctttttctccaggtttcccctctcttctaggctggacaatggaggaggc<br>ttgaaacagtagctggcaagtggtagaagagatggagcagagaagcaagaagaagcagactcctcactccttcaccagggtggatttgctggtttgaagc<br>agacctgagttgggagaggagagaggcgagaagttttaattggatgaaatatttctttagactggtctatacttttttctttatatctaaaattcactgg<br>aagagctatgaaatctgtccaagattt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	103133358	103133359	1000603	0	+	1387; RIP_Alu_chr4_103_01	NA	NA	SINE	Alu	Yb8	tcttaaactcctcacatcgtgatttgcctgcctcagcctcccaaagtactgggattacaggcttgagccatcgcgccaggccaagacgtgtcattttcaa<br>taaatcattgaagttgtacggacttactggtaaaatgaggttctgtcttgtccccatttgccctgctgggtgcgtctatcgaagttactttgatctactt<br>tatgcttcctccttccttggtgcttttcagagtgcaacacaaaacacactgggttatcacagttcagctctaattctgtgagaatgccaataatgaggat<br>gatcgattgatgggtaatagaacaaagccttgcatttgaaatgtaggagacaccttacaatagtaaaaacttaagaggactca<font color="green"><u>AAAGGTCCTACAAGATG<br></u></font><font color="red">CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACC<br>CCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCG<br>GGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAAATA<br>AAATAAAAT</font><font color="green"><u>AAAGGTCCTACAAGATG</u></font>tagaaaacataccatattatcatcagttttaattacaaaataataaatattagcgttattataaattgttcaaa<br>tttacaaccattctgttaacatgtgataacttgagcctgacacatagctgtagttttgcagcaacatagatgtggctggaggccattatcctaagtgaat<br>tactcagaaacagaaaaccaaatagtttataagtaaaagttttataaaatataaactattttatagatagtatacttcattgcaattacaacaaagagta<br>tgttttctttaaatggagggaatatcattgcagttctcctttcaaaacaaaggcttcagagaaatgattaaccaaaagatctatataatagaaatcaatt<br>gtttcttaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	110498758	110499065	1000604	0	-	237808; RIP_Alu_chr4_110_01	NA	NA	SINE	Alu	Ye5	tgagttatcaaattttcatacatcaaccagccattcagatttcaagaactatattcccatatattggtttatgagcacttaggaggataactttaaaatt<br>taagatactggattttttgtgtgtggggggaagagagagagattggttttaagcaacaaaagagatagctatgtactaaactctaattttgctacagata<br>cgatactgagccaaactcttttgaagttccttgcccaatattcttggattatttgaagtcatatttgacatctgactatgcaaagaatcaaactctcttt<br>taattaattgaagttttccacataaaactgatgtggctaggtcacttttgtggtcccttttaatatttaatctcataggtctt<font color="green"><u>AAAGAATTCAAGTACCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACCAACATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAATTCAAGTACCC</u></font>attttaggctatgaaacgatcaagttttagcaatattcaaagctctacttcaattaagtcaggtgacaggctggg<br>tctgagccttagttgctttatcagttgatcaataaatacagggtaatatcagtacctatttcccaggactcccagaagtgagggggactgagtgagacaa<br>agctcatgatagtgtatggcacatgctaagcattagctatcgttttacatgtattattaatgaaacaaaaggagtgctgacttcaaaagctgctggtatt<br>aaaaactgcacaggatttacttggaaaaaattagctctgtcattaaaaatgattgaataaagcacctgaagttttaacctggactgaggatttttccatt<br>tcagtttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CCDC109B:NM:017918:1/8	
0	chr4	111808770	111809059	1000605	0	+	6172; RIP_Alu_chr4_112_01	NA	NA	SINE	Alu	Yb8	cattctctgcttttttatgttttagagtctgtgtttggtgctaggttaaatattattcttttcttgcatttctccatgaatatctacttgagttttgaat<br>ttgaacatatccagttttttaaaaaaattaaaagaggaatattttggaggagaaggcaactgcttttcatctcagtaaattcagaaaacaacactaacgt<br>gttttgtaaatactgacttaaaaataggaatgaaggaataaatttgagagatttctaaagactctattaaaacatttgttaacacaagccttgtttactt<br>cacacaattaatgtataatttaatatctatttttaaaaggtaaaattattactctcatctgatataagatgaccatacatc<font color="green"><u>AAAAATTTTACTTAACTAA<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGCGGAGCT<br>TGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTA<br>CTTAACTAA</u></font>aacaatttatttaactgattaatttatgagaaagccagtgggatatatagcaagattaaaagagaaatcaaagtaccacactcttattgtc<br>agattaggaatgctgcaataaattcgcaaatgaatgccaaactggcaaaactggtcaatatctatagaacaataatcaactgcatttcacagaaacaatt<br>tacatttctataggcaggaattatttgtattactatcaaatttctacaagtgttctacaagttaatgtccatcactacagttataaaatagcctgctcaa<br>agactaaaattgtgtaaaattttgcacatccctaaaattgggcatataaaggtacacaactcaaaagtatcagactgtatcattctatta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	120013800	120013801	1000606	0	+	30866; RIP_Alu_chr4_120_02	NA	NA	SINE	Alu	Yb8	gcaatttatgggttaacttgtctttgaagttcttttttactcatcacccttcctctgccccaaatagaactgactttttttccctttatgtccctactgc<br>ttccaatacaggctatttttcatagcccttttagtatagtaagcccacaagtctagcacaatgcttgcttatctgattctttgatagacacaaacataat<br>tcatggaccgtgaattatggaccatgagtgcctgtggctaaatgttggaaaagtggaaagggtcatctctgccctcatagcttacttatagtcacaaaat<br>aaaaacttgcagtccaaaagtcaaaagcactcccaagcccactctgtgtcacagatgtcacagatgatatggatttac<font color="green"><u>AAAAAAAAAACTACGTCAAACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAAAAAACTACGTCAAACT</u></font>ttgtttttttttttttgagacggagtctcgctctgtcgcccaggctggactgcggactgcagtggcgcaatctcgg<br>ctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgcgcccggctaatttt<br>ttgtatttttagtagagacggggtttcaccttgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggcctcccaaagtgctggga<br>ttacaggcgtgagccaccgcgcccggccagtttgacgtagtttaagggatctgatttatagacctcctaaagtcctgtgcttatttaatattttcaaata<br>ca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	121808943	121809246	1000607	0	-	237878; RIP_Alu_chr4_122_01	NA	NA	SINE	Alu	Ya4	gtttatcataaaatggaatattataaagattttatgataatatttctattatgcttagcaacatgggtgaatctcagtaacaaagccttgagtgaaataa<br>gctagagaaaatggaatacatctgtttgattccctttagctaaagtttgaaagcaggtgaagctaatctataaaattataaatcaggattgtggttacct<br>cactgtgagggtagtgattagaagtagatatctggggagactgtttcttgatctgtgtgatagctatatggctgtgtttactttgtgagaattcattgag<br>atgtatgcaccaagtttctgcgcctttcagtaattgtgtgacacttcaataaaaagtttagttaaaataataagacagaacaacaat<font color="green"><u>AGGATAAAATGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGGATAAAATGTC</u></font>taggctgtgggtttctgctttagctgggctgtcaagttgtggtaggacctaaataataagtgtagcggccatctgaagaagaa<br>ctaggtgaagaaaccagattgtagcagagatgacaatgaagtcagattgttcaaaggacagaaacaaagcagctaggctaatggttagtggatgagagac<br>cagtagtggtgtgtaggattagagaggcaattctagattagataatgaggtttattctggtggtagaaggaagtcatttaagggatttgagcaggagact<br>gatgagatttgatttatgtcttgagaaggtctttgtgtctgcctcgtggagaacaggtagagaggcaagagtggagcagggagaccacctagatgtctgt<br>tgct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PRDM5:NM:018699:2/16	
0	chr4	125671752	125672057	1000608	0	+	238661; RIP_Alu_chr4_126_01	NA	NA	SINE	Alu	Yb8	ttaattctcttacactctagacttgtacatccacgagtgagcacccagttcataccaaggtgtccaagaagctctagtcagaaagcaagaggcatgtgtt<br>gtagtcttggggttgctgtttgaagctcgtggaagtttgtgtggaactggttgctgcagaagggcccgtaataaaagttgaggctataaagatttgatgt<br>ggcctacaaggttcctaatttgcaagggcctagccacatgaactgaaattactcaataattctaggcttctgcttccataccaccacccatcacacatcc<br>atatatttagctgggctgcttagacacatagtcatgcaaaacaattaggggcacaattagcacaaaagaagcttttgagtgaattat<font color="green"><u>AAAAGTTGGTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGTTGGTCCT</u></font>gcccagtggatgaattatagaaaggtgtctttttacatggaaccaacccaaatgcccatcaatgattgattgaataaagaa<br>aatgtgatacatatacaccatggaatactaggcagccataaaaagaatgagattatgtccttcgcagggacatggattaagctggaagccatcatcctca<br>gcaaactaacacaggaaatcacatgttctcactcataagtgggaattgaacaatgagaacacctggacacagggaggggagcaacacacactgggtccag<br>tcggggggtgaggggcaaggggagggagagcattaagacaaatagctaatgcatgtggggcttaaatcctagatgatgggttgataggtgcagcaaacca<br>ccatgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	129207250	129207251	1000609	0	+	9011; RIP_Alu_chr4_129_01	NA	NA	SINE	Alu	Yb8	ggaaaagcttgaactaggtataaaatgctgtctaaatccttgatttaaaaaaaatttacttcgcttggcctgtttaaatactgtactttggccctgttct<br>cttgtcccacgtgtgcttaagtaaacaaaaatgtattaaccatttcagttgatataagtaggcagacaccttgtgttcacatttatgtaaccagaagcaa<br>aaactctgtaagctatgtatttacttggttggattaaatgtgtatatatacacagaagtacaaacaactaagaaataaattacataattcaacaccaaaa<br>atctcctatttcttatccctattccaatgaacaaactacaaaccaaagcacttctaaaatatcttccagctatcaagcactgaaatca<font color="green"><u>ATATATACTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAA<br>AAAAAAAAATAT</font><font color="green"><u>ATATATACTTCT</u></font>taaatcttatacacctacagattaaattaaggagaaaaccagcttacttccagactgccaaccctatgactttaag<br>gcttggaggtactctctccaataacaggtcactttaggtctctaatttaattatttattcttattgtagtcaccacttttttttaaagcttagtattaat<br>cagtgcacaaccaggatgcacaatgttgctcaactgtatgatataccaacaggttccatgagtctggggtttattaacataatccaaaatgtatgctaca<br>accacactgtaaaaaaagggcgtctaaatcaactaccctacacaaagttccctgaaaacaaagttctctcaaaacaaagttctaaaaatctttaacttgc<br>ataactggcaca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PGRMC2:NM:006320:1/3	
0	chr4	134295561	134295863	1000610	0	-	20624; RIP_Alu_chr4_134_01	NA	NA	SINE	Alu	Yc1	catggatgggattttctcacaactgcatcagagactgaagctcttcctctctaatgtttcttctttatccctgtcttttcagaggtgtcaaacttgcatc<br>acatgtttaaaaaccctccctattactactcccactctcctttgactttaactgatttttattcccccaaatctctttcgcttccaacttagattgagta<br>tctgcttcccagtaaaacatggattcccactgtatatataacaaatgtcaatggtattcaaaatatagtcttttctgtttataaattattaaagaaaaat<br>ataaagaacatgcgtgaagtgaaaaagaaatgtattagatttctattgctgctataacaaattacaaaaaaacttaattgctt<font color="green"><u>AAAAAATACAAATTTAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAATACAAATTTAT</u></font>tctcttaaaattctaaaaatcaaaagtccaaaataagttttatgaggctaaaattgaggtgttggcaggcctgtttcctt<br>ttggaggctccagggaagaatccatttccttttcctgttcagcttctagtgggcacctgcattctttggttatagaccctgcttccatcttcaaagtaca<br>tcactccaatttctgcttctgccatcacattgcctttttctcttaactcaattttgaaggccatttgtgattacttttagagccaatttagataatcaag<br>cataatatactcatctaaagatcctttacttaatcacaactgcaaagttccttatgccatataaggtgtatgggattagaatgtaaacatgttggggaaa<br>agg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	150161057	150161381	1000611	0	+	13443;pAlu4-150627143; RIP_Alu_chr4_150_01	NA	NA	SINE	Alu	Yb8	tttcattgataacatatcaatgcatctaatacattggcaaacttttatttagtaaaaaatctttaaagagcaaaaagcaaattttgtgaagaatattgcc<br>atgattataaacagatgaagaaacacagatgttaaaataacagtgttgatgcagatgtttcagagaaacaatatgtagtcaataattcctaaccaaaggc<br>ctgtaatggataacaggcctaatatattcacgtagggggacactaaactcaggttagacaaaaaccgctttccaggaaagggttatctaagattggatga<br>ctgacttcataaagccttctgctttgctttattaagtgtcttcatatcttttgcttgtaatttccctataatcggctatggtt<font color="green"><u>AAAACTGGGCTGCTCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTGGGCTGCTCTA</u></font>actcaaaatatcaaggccttgctgattttcttgtcttaattgtttcctgtgacacagc<br>catcaagtaaagtcaaagcatcatagtattgttgccttctagaccaatactatccaacagtaatataaagcagtcctaaagagcaagccacatatgtaat<br>ctaaaatttcctaatatattttgaaaaaggaaaaggaacagaagaaattaattttaataatgtattttcatttaactcaatgtccaaaatattacaattt<br>taatatataattttttatagagatggggtctagctctgtcacccaggctgaagtgcagtgacatggtaatgagtcactgcaatctcaaacttttaagctc<br>aagcaatcctcctgcctaagcctcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	150951041	150951349	1000612	0	+	pAlu4-151417127;9448; RIP_Alu_chr4_151_01	NA	NA	SINE	Alu	Y	tcttgaattgtagctctcataattcccacatattgcaggagggacccagtgggaagtaattgaatcatggaggctttttccccaatactgttttcgtggt<br>tgtgaataagtctcatgagatctgatggttttataaggggtttacccttttgcttggctctcatttctctcttgtctgccaccacgtaagatgtgccttt<br>caccttccgccaagattgtgaggcctccacagacatgtggaaatgtgagttcattaaacctctttttctttgtaaattacccagtcttgggtaggtcttt<br>atcagcagtgtgaaaacagactaatacagctttaaaataaacaaagtgtttctatagcctggggaaagaggaaatggtctacgtttt<font color="green"><u>TAAAGTATTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAACAAA</font><font color="green"><u>TAAAGTATTTTTA</u></font>aatgttggtttgttatttcttttgtttatgcccagtactcagaatggcttttttattttattttattttattttattt<br>tatttttttagcgatggggtctctctatgttgcccagaatagagtacagtggctattcacaggtaggatcagagcatactacagcctgaaactcctgggc<br>tcaagcagtcctgctgtctcagcctcccagtagctaagactacgggagccaggtcactgtgcctggctcagaatgacataattttagaaggaagtgaact<br>taacatttattttcttattttctccatttttccccagctctgtaacacttactttcatcacaattagaatgatttgctctgccttttctgtaggcagaaa<br>tttaaatct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	160628476	160628477	1000613	0	+	238918; RIP_Alu_chr4_160_01	NA	NA	SINE	Alu	Yc1	aactgatcatgtgcagtgcagcaacccagtttaaattggcctacttcacactgatagtgtcactatgggaactatcctcacagacccactagagacctgg<br>ggtcactatgggaactatcctcacagacccactagagatctgggggcttttcttctagtgactaatatccctcatctgatattttgctagatggaattct<br>aaatagggaacttctttacatcaggctaagcaggtccaatgtctaaggcagaaactagaacacataatatgtcccaaatatttacggaacaaacactgat<br>ctatcaaagtgctttcagaatttcaaaatacatggattttagaaaataatttttttattgttaaagatttatgttcctgtccacttaag<font color="green"><u>AAAAAATTAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAATTAGT</u></font>agaggtaagtatgcattgccaagttaatctttggtaatgttagggagataggttttaagcatttgaacacacaaaattt<br>gtttctatgtttttttcattttgttccacaaggagttaatgatggtaggctgggaggcttgtgtcttccttttagtggcgcacagattacgtagaaatgt<br>gctattcaaagtataacctgtggacccacatttgcatctccacaaatggcttgttacagtctgcagaaatataagtagagagacttataagaaccagtga<br>atagaaacattttatagcaatttgatattgtcaaaacaccctactattcttgtagacccatttttatgaacgtgatatagaccaacaatatcaatcaata<br>taaaaatgaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	163232415	163232714	1000614	0	+	53704; RIP_Alu_chr4_163_01	NA	NA	SINE	Alu	Ya5	ataattgctattatacagtttagaaaacttttaaagagaaaatattgaagctagagttgagtagataaagtttttcaaagttctgagcaaatttggcaaa<br>ttggaattttgaattggccaaagtatcattcagctacaagaaatgggctgaaagcatgcttggacaaatagtatttttgttcaaataacttctaaagaat<br>gttctagaagaagaaaactgaacacagataatatgtgagataataataatgactaaattactcaaaaaaattggaattcaatactggaaaaccctaacat<br>ttgaatggcaatgagtgatatcatttaaatgattctaaggtatatatgttactcagatggaagaaaaaaattgtgattaacttttaagtat<font color="green"><u>AGAAATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAATCTT</u></font>atatatattttaagttgtaaaatctaacagaaagataatgagtatcttccagaaaggtaaatcaggtaaacagaaagcacaaaagaaatct<br>aagtataacaagagacaaactatattagaaatggtctaaatgtctgtcttaatgatcaaaattattacaattgaataaattaaaaaagagagagaaatag<br>caacgcattttactaggtgcactcaatcaatataaagaagactggccagggacggtggctcatgcctgtaatcctagcactttgggaggccgaggtgggt<br>ggatcaagagttcagaagattgagaccatcctggccaacatggtgaaaacccgtctctaccagaaatacaaaaattagctgagtgtggtggcaggcgcct<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	167108104	167108429	1000615	0	-	pAlu4-167574198;8359; RIP_Alu_chr4_167_02	NA	NA	SINE	Alu	Yb8	attttcaccaagacagagacaagatcccaggttaaagaaaaataaaagcagaaagagggtagcataggggaagaggcaaaatgtagctctagtttatgtt<br>tctactgtgtagctcagagcaatgaggcatagccatactgttgactcctgtactacacatacgcctaaccacacccataaacacactgctaaccagtaga<br>aaagactgtattattttcacttggtctacaaaaaatgaaagaggcatttctatggagaattttcctttatgaatgttggatatgtataccagaataaaga<br>caaaaaaaagattgatttctttagatcaatacaatataatctttatatttttaagtgtacaacaagtgaaaaagaataggatgt<font color="green"><u>AGAAAAGGTTGGAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAGGTTGGAAGA</u></font>taaacatttgggggcaagaatctagaatatggtaaataagagtaagagaaaaaaattg<br>gaaaatttcagaacaaaataaaaatgaaaaataacaggaaaatgtatacttcttggtcttttacacagaaaatgaatgtaatgttacttttaagactgaa<br>tatttaacttctaaagaattaatgcaaatttggataaatggggatatttacctccatgcttaatgctgcttttatttttatatcattccttaaacttgaa<br>attcttttattctacaatttcatttatacactcctttcctggtttgtcttcattttgaaatacacctcagttgtattttgggggttcatcctttatcatc<br>ctcctttaaatattggagttctctaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	167412044	167412139	1000616	0	-	52971; RIP_Alu_chr4_167_03	NA	NA	SINE	Alu	Ya1	agaatagagagaagtagatgaagacacaataatctcttttctaggcatcctaaatggattgtctttgcttctagtttagacttatgagtaggctgctgct<br>taataccctgcaggagtttcaggaaacccaacatgcctcaaattacactttcttcatttacttgctgacccttgaaataattttaacaccggtcattgat<br>tttagttctataattaaaatgtaaaaaattaaatgataatagcctagccatagaagaaaaagcacagtgatagtaaagactcttaagtgccttacatctt<br>tcttgaaaattaatcctatctgagtagaaagaaaaagataatgtactaagattatatgagggaaatacaggtacatagaaacatag<font color="green"><u>AAAGATAAGGTTCA<br></u></font><font color="red">CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAG<br>ATAAGGTTCA</u></font>gggtagagaagacaaaaatcatgtatttcatatcaagtagatttatttaacattagtaaatatatacagaaagatatataatataatatg<br>aattcctgggttgccttagaatagaataaatatatacagaaagatatataacataatataaattcctcggttgccttagactaaattcctggttgcctta<br>gaaaattggaatcctttcttgtgccttaaaaagaaaaaaaaaagcctgaaatcaacacagaagagccaataaaaacacatataacttactcctttagcat<br>aattggaaaacagagtaccatgaacacaaatttgtttgtaaatagagaaataaacatcaagctgatatcacatgactgttcagagagggaaatgga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	170834599	170834600	1000617	0	+	4651;pAlu4-171419045;1104685737045; RIP_Alu_chr4_171_01	NA;NA	NA;NA	SINE	Alu	Ya5	tgtttttgcaaagctctggaggtaagtattgctttacattttaaaagggttgcttaaaaattttttttaaaaaaaagctaagaagattgggcagcagaga<br>cttcgtgtggtctgcaaaactatttactatccagtcctttacagaaaaatgtgctaatccctgggctaaaacaatggtctccaaagtgtggtatgtacat<br>tccaaagattgtgcaagataattcagtaggttcttaattatttattcttttgcattcatttattgcttatgttttataatgcacataatttttagtatag<br>taatagatacatataatttataaattaacatatacatacatgttttgggaataatgctcagaaattttttaataatgcactttatgataa<font color="green"><u>AAAAATTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AAAAATTTTG</u></font>g<br>ttaaaatacaaaatttatgagggcaagcgccatattctctccttccatattcccaccatctaatacacactcaatgtaatgctttttgaataaatgatag<br>cagtagacttaaacatttattgagcacatattaactaagctctcggaatgtaatatcttctttaatgattagagccaccctatgagttagatcttgttac<br>ttttattttacaaacgaggaaactgaggcccagagaagtcaaacaacttcctgaagctctcacattactagtaaaaactggaagctgagtctgatgccag<br>tctgactccaaagccagtgtttttaaccatgaatgacctgtctctaatttcattctttttttttactctttatgtgtatcagaatgcaa	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	171888871	171889174	1000618	0	+	7126; RIP_Alu_chr4_172_01	NA	NA	SINE	Alu	Yg6	tacaacctaaattaatgtaaaatttcatttttccttgaagtgattacacaatggtatgttggcaaatcctaaataatcagatctctagggttttactttt<br>gcttaaaagctctgttctatagcatttcctgattttcatgttgtaaatattcccacaagggctgatttagagctatcaatgtaacatcactaaatatgca<br>atgggaaagccagtgggaaccagctttaccacaccactataacataaggtttatctttcatccttctggtaattatcatcttgaagcaactttacttgtc<br>agttattaatatttggttctggggaaaggtaagtagagcgtcacacaataagaatcattaatactaacccagaatatctcatctc<font color="green"><u>AAAAACTGACGTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAAACCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTACAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAACTGACGTGCA</u></font>gagtatatctgcaaaatattttaatgagatgatgtgaatatttctaataattttataattagaattgtttgtttttgaaac<br>taatgcaaatacataatccaatgcagagtttagggccagatattgtgtattaaattattccaataattttttataaaatataagaacaaattatattcat<br>cacaaccacagtcaaatactattggaaatgtgattttcctgaatctagtattcctgctttaaaaatctctttggtccagtgataatctctgttacgcact<br>gtaactaatacttaaaacatactttcacaatgatttcaaatccctaaaatagaaacaatagatgtatttgccaataaagtaaactgtttccagtttgtca<br>atat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	178156838	178157156	1000619	0	-	pAlu4-178741188;238465; RIP_Alu_chr4_178_01	NA	NA	SINE	Alu	Yb8	ctttacctgttgcagaaggcaggattatagagttaagagaactaggactgagtatcctagctgatgaagcactgcatgttatatcttttcttttcttgga<br>aattcactatactcattaacatttcaagactctaataagtcctgcagtgaaaaaaaaatcaatactttctatcaagattttccaggcatatttgacacag<br>aatacatttttgcgtaccatctattaatatttaggaaataatttaatagaatataacatctttggataatatattctgccactatagaaagttatatttt<br>taaaaatttgttttaaatattatgagaatatcttgaatctttacaattctagtgaatatagtcattaaacatagatattgtataacattt<font color="green"><u>AAGAATACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATACTT</u></font>atgtggtcttgtccttaagagatctacaccagaattaagattagacttagatatctcaaattcaatcgacc<br>atttaagttgaacttcagttctttgatttacttctctagattaaatcctttaaaggctgtttcttcctcgatattatttgggaatataaacccaatctta<br>taagaccagaaaaaaatatcaagtagttatttctcctttaatcacaaaacccttgcaggagataaaagattagcctcagactttctgacctataatgtta<br>acatattttaaaagaccatcatttcaaatgctctagtttcttttttgagcaaactgtgaaaaaacaaaaaactcttctagtatctgtcttctgtggtctt<br>cactacatatctcctgaat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	181317290	181317454	1000620	0	-	pAlu4-181901637;16436; RIP_Alu_chr4_181_02	NA	NA	SINE	Alu	Yc	ggtttcaccatgttgttcaggctggtctcgaactcttgacctcaggtgatccaccagcctcagcctcccaaagtgctaggattacaggtgtgagccactg<br>cgcccggcccaagaattaaatattgtcaagaagaacgttgtagaatcagcaattagatgtggaaatatcgcattcttaaaataatattcattaatatgaa<br>ttatttagaatgagtaagagactatatcaattctatgagaagattctaaatttctggcataatacaaagttcttgattttactgactttttttgaatatc<br>acaactaacattacaactgttaactaatatcattttagaatgtaagacctatgaaaataatttgataaaagatgaacattgt<font color="green"><u>AAAAAAAGGACAGCCTGT<br></u></font><font color="red">GGTAGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACT<br>GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGGACAGCCTGT</u></font>tctgtagaataaactaa<br>atctccagggtataagcttttggatagtttggctcatataagcataaatgaatttttgtgaaatttacatggaatatggttttaatttacatttatgtta<br>agctgatttgaataaaaaatttaaaaacacaagttcaaaaacaaaataatgtgcattaaagattgaaaaaatcaactttaaatcatttgtttatttgatg<br>tgttcagtagaacttgactctggtgctagacaacatcactttctgctataatcatgctttcttaaactatcatttattgaatattgattttttgtgaatt<br>gtgattacatatacatgtatataatcatacatgtgatatatctataattatatataattacaata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	184754854	184755151	1000621	0	+	2532; RIP_Alu_chr4_185_01	NA	NA	SINE	Alu	Ya5	cgcttaggtctggcatcatcaaagaatgtctaactctgcttggtaatgatgaaactggtgggggtttttgaattactcttaaaaagttatttccccaggt<br>aagttcatagcctggatatttccccacataaaagatcaaacattccttaatctcttctctatatcccaccctttaagaccttcaggttagagaggagaca<br>ttctgaaaaaatccaaatgcaaacagtggtatgtcagaagaaatggtttcaagtggtcgcaacagagaaatagcgttggcaaggcgggatcggggctgat<br>gaaaatgatacaggcttttatatttctgcaggagttttttttttttttcattccaagcataccagagtttcaccaaagcaggtag<font color="green"><u>AAAGAATGTGAGAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGAATGTGAGAAG</u></font>gtgttgtcacaaaatccaggcatgagtgtatttctcctccttagagccagcctcttctggcaagccattggatctcttcaagcctca<br>gcttctccatctatagaatggctacagcagtgttacttgcttcccaggagaggagcattccatcagcagtaaagcattcattgatcttccttttgtttct<br>ctgtcacagcctggcatggtcccaaaatattgtagtaatcaatgtgttttgaattaatgggtttctaaatattcccatgcttcacacagaccgttttgga<br>tctctgaagttttgcaccgtgcagcctgttaggcagttgatcaacctgtgactaccttgtttgtggcttattttccccagccagagcagcccggatct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	189793255	189793558	1000622	0	+	8061; RIP_Alu_chr4_190_01	NA	NA	SINE	Alu	Ya4	ataaaatattaaatattctttccaaaattcaaatgtttgtatttgtaacatttattcctgatgctgtatataaagtataatgctaattaaactacagtcc<br>ccattctcgagtgggcatttttgttttgggttatgactggaatagtctctatttcttatgaactacgtggatttatccagtgaaacttccttcagaaatt<br>atataaggctgttaggatgcaggactcactgtagcaccagtatcatttcttccctaaacatgaattatcatttaaatttacttcttaaacaacgcttttc<br>atgagtgaaaaatggcatatgtcatatggataaagaatcaccgaatgacatcagtgtatccaaaaccattgcggaaagataactt<font color="green"><u>GAAAGTACTGGATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCAGTGACAGGCGCCTGTGGTCCCAGCTACTCGGGTCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTCGCAGTGAGCCGAGATCGCGCCCCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAAAAA<br>AAAA</font><font color="green"><u>GAAAGTACTGGATTA</u></font>agtctaacgccttaagaggaggcggatggtttacatagtccttgacactggaaacatgtctcaatgacactgtatgttttc<br>tctctttagttttcacttcattttgatccatcgcttcatgtgaattaaacaatgggagcaggtggtatggaagtcctgatttgaccacattcttctctat<br>gacatgtcttaaatttcatgagtttcctgtgtaaactctctttggcagaccctctggatacttcgtgatggcaaaaacacatcttactctggtaaaatat<br>taagggtgttcctcgaatctgaataataaaatggcattgagatgaagtacattaatgatgcttggcagaacaacagtcagggtgttttcaaggtattcct<br>cctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	189969696	189970030	1000623	0	-	237921;pAlu4-190554038; RIP_Alu_chr4_190_02	NA	NA	SINE	Alu	Yb8	ggatctgtgggctttagttttctcaataatgaaatcggagggtaagtcttaaaagtgtgtaacttcacttttggtttttaaattatggccaaataatatt<br>atgagaaactttatatcatataatcattagatttgaaagaaaacagatattatcgagtaataagatctagtctctatattgatttgattcttgtttaatt<br>ttgcacagactatacctatggaggaaatgaaatggcttttgttgtaggcagatatttatattattttaaactgcagggatttgcagtaaatgagggatta<br>taaatatgtacgtgggaaaagactggatattaaaagaaaaaagaactactcaaagataaaatggatggcaaacattttttt<font color="green"><u>AAAAAAATCTAGCATGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGG<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATCTAGCATGCTC</u></font>aagaacatatgtgatagacaaatcagaaatcaggaaagtcaagaat<br>ggtgaagcttgtaaaagaaaagagaaggtcctgtttaagaaaaaaagagaagaatgagtagtttcaagagctagtatatcatccaaatgaagctgcgtga<br>ctccaccactggctaggagtgtgaccttgtgacaaatacttaaccttcctaaacctcagtagtttgttgatgatcatgatctctcatgaaaattctctgt<br>gggacttgcacaaacttgatctttaaaaacatagctccattgttatgaatttctcctaacactgaaaacagaaaggtaaagaaagaagagttctgaatag<br>gcaaaacagacaatacacctattttaggagataaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	190291432	190291737	1000624	0	-	4965; RIP_Alu_chr4_190_03	NA	NA	SINE	Alu	Ya4	ccttcacagaaggggagactgaggctaactgggggcgtgtccttcccacactctcccaaacccacagacctgaactcacacgggaatgtatatcttgggg<br>gtaaccaaaggcttttcaacaggtgcgagacttcgtataagagagatcactttcagatcctagcttcattttagtttctcctaaaattaatctccctgag<br>aacaagcctgacatgaaagaactggcctttcctttcctgcctccccgttcccagttggaaagcacgtcttcccaggtatgaatctttctgggagcctgac<br>ccaagttataaaaacctggagtagccctaaaggaaggacgagggatatcactgttgagagagttcatggctctgatgacgactgcat<font color="green"><u>GAAAATGACTCCG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACAGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>GAAAATGACTCCG</u></font>atgactgcgtgaaaatgctttcgtgggccaggtagggtccacttctttgctctggaggagaagctgctagataattaccta<br>tgattgttgttaatgtaaatgattatggaattttcagcatatacttcaaaaggatttaaaaccattgagtgacgttgctataaacaaactccttcaattt<br>ccatctacttgtttatgggaacaaggttttagaaattacatctataaaagtgaaaagtaggaataaaacggatgttgaatccgacctcattgtagcagta<br>acatctgtggaaatgtgacccactggaaaaaataagctccattcatctcatgaagagatgcatttccaataataactgacttcaggtttatcaatcactt<br>aaaatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	9411774	9412074	1000625	0	+	20788; RIP_Alu_chr5_009_02	NA	NA	SINE	Alu	Ya5	atttagctcagccactgggctcaagtagacaaataggaagtgagttttccatgtgtactctgttccttatctgcacagtgggtgccctctgaactgagcc<br>tcatcagaggctatgtgtctcagcccacacgcaagcaacgtgcatgctgcctgaagtggaagcaaaagtgtgttgttagttgcgcacccatagaagcaca<br>cctgagcctccctatacagtgcccaactagaagaggctgagcacttccctcctgtcatttgtagactgatagtccagtcccatcattaccaggtctcacc<br>cactgccagaaggatggctcgtcctcagtcccatgaactcagctgtgctcatgagttaccaatgaggaagggatgaaaggagaaaat<font color="green"><u>AAAAATTAATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATTAATCTT</u></font>gtatccacaaaacataaaaactcacattaagtatcccatcatgattataaaatatcaccactcatcacctataggaggataaacta<br>aggctagttaagggtaaatgatattgtgactgtcaggactagggcatttgtttagaatgacatagaaggtcttagctaaatccatgcaaagtgttccccg<br>aaatgaacgttcagtctcctccaggaaggtgattccccgtctcagtaaaacataggtagaaaaatcagtcttatcatgggttacagaataccctttcctt<br>tctacctcccccttctgcttgtcctaattaagtcctcgaaaattaattgtataaaaacaaaatgtagtctaccacttattagattatcctatacccaata<br>g	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SEMA5A:NM:003966:2/23	
0	chr5	25777322	25777630	1000626	0	-	5105;pAlu5-25776807; RIP_Alu_chr5_025_01	NA	NA	SINE	Alu	Yc1	tgcccggctaattttttgtacttttagtagaggcagggtttcatcgtgttaggcaggatggtctggatctcctgaactcgtgatccacctgccttggcct<br>cccaaagtgcctggattacaggcgtgagccaccgcgcctggcccctttgcctgtttttaatcaggttatttattttatttttttgccgttgagttgcaaa<br>gtttttaaatgtattttggatataacccttatcagatgcatggtttgcagatttttttttcacatttaatagtttgtgtcttcacaccggttattgtttc<br>ctttgctgaactgggcattttagtttgatgcaattctatttgttcattttttcttttgccacctgtgcctttgaagaatacgctt<font color="green"><u>AAAGTTCTGGGAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGTTCTGGGAAAA</u></font>acacaagaaaacaaaaacaaaatccttccaaccaagaatattaatttgtttttagtttaagtaaaaccataagatt<br>gacttcagccacagacaaaataattacttaaaagctttgattcaatttccaataatatagtttctctctacaatctgtgtaaaattaagctccatttaac<br>ttttaatgtaatcatactgtacttggccacaaattatgagtattcatgcagatatttgcaatgagataaaataattttggctatcgaaatttttgaatgg<br>actgctttgcattgtttttgtaagctcagactttcttattataattttatagaattaatgcataggttttggaatctttgaatcactgatcacacctata<br>gttttcttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	33355576	33355894	1000627	0	-	Yb8NBC419;16571; RIP_Alu_chr5_033_01	CATCTCCTGGCAACACTGAG	ACAAAGCAAGGGTATTTACAGC	SINE	Alu	Yb8	gtaagagatgccacatactataattctgatgacatcaaaaggttcagtggatgtattcttgaatattctctggacatatgtaaacattttgaatatatca<br>caactttcatttttcctaataatggaaaattaaccatgcaattaaatatatgacagtcatggatgacttcataaagggattttaaactgaattatagcta<br>ataaaaaatacaaagcaagggtatttacagctactatgaaaaaattacaaagaaaacaataaaatcatctttagggctttcttattaaaattagtttttg<br>ctgtctaaatgtaaactttatccttaatttaggttttgttattagcaaattatgttttaaattaattggtggtgtcaaaagtatcatt<font color="green"><u>AAAATGTGTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAGAAAAAGAAAA</font><font color="green"><u>AAAATGTGTTAA</u></font>aaagatattattgattgagcactctgtagtctcagtgttgccaggagatgtatttggtttaactgaaat<br>ataagatatttttgcctttagttatttatagccttcttaggtaaacgagagaaaacacatgaaattatgaaaaaagagtcagtggcgattaagtgacata<br>ctgtgtcttacaatcactacttggataaataattgattggtatgagctgaggtagtttgtcttgtggttcctgatagagtttctaaaattaaattactat<br>tccagtatcttcttggacctaaccatttggttaaaggtcaaattccttctgctacatatcagaaattccgtctgtaatttttatttgaacatttccctac<br>ctttttcaataatgtattc	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	572	241	NA	intergenic
0	chr5	37293820	37294130	1000628	0	+	238457; RIP_Alu_chr5_037_01	NA	NA	SINE	Alu	Yb9	ctatgcagatttagtctgacatcataaagagactaaactagcagtaacagaaacttaattctaggtctggcttcaccagttactagccatgtgacttaag<br>caggttatttaacatctctgctcttgttttttgcaatataagatggagatactacagttacctgctcatttccatcacaggctaatgttgtaaagcactg<br>tgtgatgctgctataaaagacacaatctactttgacaagtttttatttggatcttttatccttagcataaaaattacaaaacatatagtctgataaggtt<br>cagcagggtgagaaggatctttaagcactgatattttagatgaggttatagtaaataaatacaatgtaatcttgttcttt<font color="green"><u>TAAAGCAAATGATGATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACGCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>TAAAGCAAATGATGATTCTT</u></font>aatgtaatgagtttagcccacaccttggtttagcctctttcaccaagagtaaagcatatttattaatat<br>tcaaaaataatatttcattttaatcatgatatacaggaaagcaactctcattatcagtttaaaaagtcaaaagcataatttccaagactcaaccaagtgt<br>aattagactaagtgataggatacaaaaatgcaatcaaaataccccactctatatctacaaagttactttaattaaagaaaataattttatgttatttaat<br>attttccttacccgtgatttgaacaactgatcataaacttctagtagtctaggtaatggtactccaatttcattcattgtctgtattacgaagcccacat<br>cccagttcaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:NUP155:NM:004298:33/35	
0	chr5	52231789	52232105	1000629	0	-	3878; RIP_Alu_chr5_052_01	NA	NA	SINE	Alu	Ya5	tgaactcactatccagaggtccttccctgcttaaaaggtacaactgaactgggacaaccagatgcagttgtccccttcctactgctgaagcataatctgc<br>aggcctgaaacctatggcatccctgtgcagcttctttagctgggtagggaacgccttgatctacatagatagacccaaggaaagccagtgatctacccaa<br>ctgagccttccagactgagagctcctcagatctgaagcagtttcctgggtttgtaaagacgaaatacatcctttaattctggaattctggaggttcctga<br>ccagctgcacctggacccttaaacatgctccctaactcttatcttcttgatttccagtcaaattctgtttcctgatattcagtt<font color="green"><u>AGAAATCCTGTGTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATCCTGTGTTCT</u></font>gtaattaccatttttttctgattaaaaaatgttccttgtagaaacattggaaaatactgaaaataaa<br>cgtttcctatacttcaactaccttggtaacattttagtgtaggttacctgtcctatttgcatatatgcatatttataaaatttgtaacacaataaaatac<br>agttttgtaccctgtctgtaaaatgtattatgctatggcattttcctttaaatgtataagtttattgagaatatgactgttcataacaaccacaatatca<br>atattgttgactatgtgccacatgctgtgctaatcttcttatatgcattattgcttttaaccctgttaacaactgcaggaagcagatcctcatattatct<br>ttgttttatctatgagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ITGA1:NM:181501:23/29	
0	chr5	64023143	64023144	1000630	0	+	16397; RIP_Alu_chr5_064_01	NA	NA	SINE	Alu	Ya4	attgggaactatctgtattagaatttggaagactatcagatatcatttcctgtgagcaatccatcttcctgtgctagaataaatgatttaataatacatt<br>aacagaaaaccctgagctctaaattcctatttgtttttatattaaagattattagttaactcctaacgcttgaaagtgggctacttttccaatttataag<br>atacctgaaatattaaaatacatgtattaaatgctctataaaaactacaaagtggcagcccctggtttctacaacctattctgtatgagaactgggtcta<br>aactagaaataattatggttaagtgcttttaaaaaatgcctgtatgtgcaaatttatgctagtatgaatgaaactgcacgcattaa<font color="green"><u>GAAAGTAGTAAGTG<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAAA</font><font color="green"><u>GAAAGTAGTAAGTG<br></u></font>ataacttctttaaccagttagtttttaaaagagttaatagtaaaaatgcacaggtggccgaagactggaaggaagttgtgatgctaaaaattccttcagg<br>tctttcacaaccctcatcagccaccatatatatatatatatatgaaactgtcaggctaaatacatataaatacaaaggtgtgtgtatgtgcatataatta<br>catatatatatatatatatatatatttttttttttttggtgggcggggggcagatagggtcttgctgtgttgcccaggctggagtacagtggtgtgatca<br>tgtctcctgggctcaagcaatcctctcacctcagccttccacatagctgggaacacaggtacatgccaccacacttggataatttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SFRS12IP1:NM:173829:4/5	
0	chr5	75435681	75435781	1000631	0	-	52811; RIP_Alu_chr5_075_01	NA	NA	SINE	Alu	Y	tcctagaaggtcaaacaaagcaaaggggcatgggaggaatgaattctgtatatttcaaggaattccagcatccaagtaaaaactacagaaagagaagctg<br>aaaacatgctcaagatctaccagagatattttctgttttattactattatatttctagagtccaaatagtgcttgtcacatagtagatgctcaataaatt<br>ttggttgagtgaacactctagctatcaatggaagatataggaatgccaagtagtctgacttggtacagttgaaaggaaagttttaagtaaaacaaaaaca<br>actactccatttctatccaaaaatatatcccagatttgtaaatatctatatttattctagaattatttagaaatattttaaaa<font color="green"><u>ACTTTCAAGAGCTTCTA<br></u></font><font color="red">CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br>T</font><font color="green"><u>ACTTTCAAGAGCTTCTA</u></font>aaaatggaaaaaagtcaagtaaaattccagttatatgtaaaagtattgtctttttaatgctttgatattattggtctagctc<br>tgttttcgtccagtataccaattgactctagctaatattgcagatgttttaaagaaaacctagtatctatgaagttggaatatttctccaggaaactagg<br>tgaacacccaagtaggtctcccaggatgcaagactggtttggacctcagtcttatatgttcagaaacccgatatgtcagcacactaaagacagatctatc<br>tcttagaagcagtctcccaatggtcaacctcaccacgactgatagaaaaaaacagaatgccagttggccaattaaaatgaaaaacaggactcccaagaaa<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SV2C:NM:014979:2/13	
0	chr5	79013712	79014009	1000632	0	-	pAlu5-79052320;4235; RIP_Alu_chr5_079_01	NA	NA	SINE	Alu	Ya8	ttagatttgcatgatgctttattctctcaagcaatcacagtgcactaacgggaagtatataaaacaaaagaatgtaataggtcggatatctttctcatga<br>agtcttttagaatgcattaaatatcaattgttattaaaatgggaaagtcacctatgatcctgcttatattacaagctttgaaagatatattttaagccat<br>aaaacaccaagaaagcttgtgatcttttaatacaaactgttagtgttttatatgagtcttttaaaaaatggaattcttaaaagcaatcattaactctaca<br>attaatatttcaccaagaattaatttaatattaatgtgtttagctgaaaaaaatatgcattgctgaataacagttcagcaaactataatat<font color="green"><u>AAAATAGCT<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AATAGCT</u></font>taggttaaaaggaacttttatgccattagggagttaagaaaaaatttcatgaaaccatgaatgaataaattgttacacagcataattatgccg<br>taatagaaagtgttcattttgtagatatactaaaggccattcaacatcattgtggatggaaagaataaggatcctgttatcacaatgatcaggtacttta<br>gaagcctggaagttagggccctctactatttgaaacctggttatcttcccattcattaactctataatccagccaaacataggcttcactcttcatgcct<br>ttgctgatatctttcttttcacttagaatgaatcatctttgtatattttatctcttatttattttagagaccagctcatatatcaacttctccatgta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CMYA5:NM:153610:1/13	
0	chr5	79557199	79557502	1000633	0	+	12749; RIP_Alu_chr5_079_02	NA	NA	SINE	Alu	Y	aggttgggagttcgagaccagcctggccaatatggtgaaacctcttctctactaaaaatacaaaaattagccgagcgtcgcggcacatctttaatcccag<br>ctcctcaggaggctgaggcacaagaatcacttgaacccaggaggtggaggttgcagtaagccgagaaaacaccactacactccagcctaggcgacagaat<br>gaggctccatcttgaaaagaaaaagaaaattaaaaagaaacagtctatacaggctcattccctttccccactcagagttttttcaaaggaatgtggccag<br>atctggaggtttacctgccttctggctctgaggactttgcagttactatttaaggtctggttaatagcttcctttgcatcgtggttggtt<font color="green"><u>AACAAGAGTA<br></u></font><font color="red">GGCTGGGCAGAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG<br>TGAAACCCCATCTCTACTAAAAATATAAAAAATTAGCCGGGCCTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCGGCCTGGGCGACCTAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AACAAGAGTA</u></font>gaggtaatgttagcagacataacacgaaacagtggcaccttaatttttattttaagtactctgcagactttttcaggggagacttg<br>atgttcataacacgtagataattttacagtcaagctcttttgatgtgactttttcagtaaccagcagtaacagacctgttttaataagactgtatagctc<br>ttggcagaccatgtgaaatatttcccccacaaaaattttcttaaattaactgaattagctccttttatacaacataattatatataagtatatataacat<br>aaatatctagcttataatttgcttttttctcctcctgaatttgaagatttttttggtagagttcaatgttgagtttaaaaacaccacacactggctgggc<br>gtgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	80751157	80751471	1000634	0	+	17409;pAlu5-80789769; RIP_Alu_chr5_080_01	NA	NA	SINE	Alu	Yb8	tgcagaatgagaataaagaattgcaatagtattcactgaggaggacaagaaaagtagctaaggaagagtgaaaaaaacaaactgctggtaaagcatcagg<br>gaggacctggctgaggctgaacatcacagatcctaattataacgtgttaagtataaggatagaaatacgcattaggcattgtggaagaatcaaaggtgtc<br>ctacaaatatttcaaatttaacgttcaaaaaaaaacaaaaaacaaagcccccaaacctcattgcctacctttacacctgcttcttttcctgtgatcctag<br>ctcagttgtgttattcccattctcccagctacttggattcaaagagttgaaatcaccttcaaaactcttaccttctctttatccct<font color="green"><u>AAATCCTCCTTCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAATCCTCCTTCTA</u></font>accctaccctatactttatattaaatactcattaagatgaaatgaaaggtaaaaatgaagatgtagaagat<br>aagcaaaattagaggattagaaagtcaaacacagaatttgaagaacttattatttgacagagaataaaattaagggccacacatactgtctggctaatct<br>agacagatcactcaaaaactgtgatgagaatccaaatattctgaaatattctgagtcccaatacccatgattgtggtgctgtggtagagggcagagaagt<br>aactagaggactttcattttgttaaatgatctgtaacattttagataagtgcctttcttcaactgtgaagtttaaagctatcttacaagcactggtttac<br>tagaaataagggaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SSBP2:NM:012446:10/17	
0	chr5	81182491	81182822	1000635	0	-	pAlu5-81221117;19522; RIP_Alu_chr5_081_01	NA	NA	SINE	Alu	Yb8	ggtcagtttattgttcctgatcttctcagtgatgtatagatatattgcatagggaaccccggtgactagcttactattccgtgcagttagcggggatccc<br>cgcaagcagctctgaggccctaagagaagtccagcattttactatatcttctgccattagcaagttttcttaaaatctgcatataatctacttaaagatg<br>tcaaggctgtttctgctttattctgcaagagacaatttttggttttgcaagttctagtatgggtgggtggtggctatgggagagactgcacatcacaaag<br>caaacctatttctggataatagcagaggaaaattttgcagattccatactggctggtctaacattgcacagctctgtgtaactgtaaat<font color="green"><u>AAGAAAAGCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAGCAG</u></font>tactaaagctacagatatgcctttatttcccccagcttttattttgaaagattacaa<br>agctacagaaaagttccaagaatagtgagatgaacctccatataacctttatctagatttcccaattactaaacattttgttacatttgctttctctctc<br>tgtacatatgtataggtgtatttgtttatgtgtgtatatatatatatatatatatatatgcttttatatgcatacacattattttgctgacacttttctc<br>ctaataataaagacattctcttacataaccgtaagactggaaatttaacattgatatgataacattacatattacaggccatattcaaatttcttcaatt<br>gtctcttcaacctccacctcctgggttcaagc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	82156733	82157031	1000636	0	+	pAlu5-82195345;401; RIP_Alu_chr5_082_02	NA	NA	SINE	Alu	Ya5	ttctgtacatgtttacatgttccctacatatccccttaggaggacacagagaaacacttccttgttctgattcttactttgattaacatttgttaagcac<br>tcaatttgtgcagagaactatgtgagacactggagttgaagagggagaaggaagaagatgtacaaggagacaatacaaggtccaaccatgcaaagaagtg<br>ttgtatagttttaatgaaggagataaaattgtacacagatactacaagaggcaatgaaaggaggaattaagatattctgaatgatgtaataattatagaa<br>atcactagcttcaaattgccaaatcagaacattacagttctaatctactgggatagggcaggagagcagtacagagggaatgtt<font color="green"><u>AAAGAATTAGAGCTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAGAATTAGAGCTCT</u></font>caaatagaaatgaaagtgggtatgacagcattctatacattccagccttttcaacatcatggtgtatgtgcatagacagataaat<br>agataggtagacataattttatttttacaatgcctcgaggtgtaaaggatttgtgtcagaggaaaacaagtcaccagcgacctaggccttgtccagctgc<br>ttccaaggttaacaggactggtgcctctgaggcccaccatacccactgggaagctctgcatatttgagacatgctccttacatggattttcccactagag<br>agtcagaatctcaaatataatatgaaggaatgttggcccaacatagttgaccatggtacatgtgatgtggcatggttagcaaggcgatatgagccggga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	90574703	90574986	1000637	0	-	5344;pAlu5-90613324; RIP_Alu_chr5_090_01	NA	NA	SINE	Alu	Yb9	gaccgcctgcatcaaaagcgccgcggtaaaaatgcagattcttgaagctcacttcaaattacagactcagaatgtcctggctgggtgggggcatggaggc<br>acctgtctgaggtcggggcctagaaataatccatcgtattaaccaactacctatcagtgattcttaggtacatttaggtttgacaactatagcaagaggg<br>cgaggatgtgagacattatactgggtagactctaggactccttacgatatagaacactgtgttctaaaattgatgtttaagttttgatggaaggaaaaaa<br>tatttccaaatttggttttatatattatattgtttgctttaactgtatatttatatagacaaatttcttttctttttttttttttttcttt<font color="green"><u>AAAGAGAGA<br></u></font><font color="red">AGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG<br>CGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC<br>TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAGA</u></font>gtctttc<br>tgtgttgcccaggctggcctcgaactcctgggctcaaggaacccttccgcctcagcctctccagtagttaggactacaggcgtgcaccaccactcggctc<br>tttttctttcttcctttttatttttatttacttattttgagacatggtctcactctctcgcctaggctaaagtgaagtggtgggatcttggctcacttca<br>gcctcaccctccccagaatcaggtgatagtcccacctcagcctccccaggggctggggctacaggtgtgtgccaccatgcctgaataatttttgtatttt<br>tttaagagacagggtttcaccatgttgcccaggctggtctcgaactcctgggctcaagggatccgcctgcctcggcctcccaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	95343327	95343665	1000638	0	+	32645; RIP_Alu_chr5_095_01	NA	NA	SINE	Alu	Ya5	ctagtagttcctgctcaaagcaggaaatcttggaggtggtacagagtgttcttttcattgtatgtgcagattaagcttccctaagaataatgctatttct<br>gggtgcaagactggattaaccatccttgattctgttgactttcactgtgtgaagaatgactaaataaatttcatttctttggctatttctttgacttttg<br>aatttagttataactcttttgcaggcttttatggacagaatatttgtatctccctaacattgctatattgaaactctaacctccaatgtgatggtatcta<br>gaggtgagccccttgagaggtaattaggtttagatgaggttatgagggtggggctctcgtgacgcgatgaaattagtgccctttt<font color="green"><u>AAGAAGAGGAAGATG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAGGAAGATG</u></font>tgcggcactgaagaaaggccatgtgagagtgcagtgagaaggtggc<br>tgtctacaagccagaaagagggccttcaccaaaaactgaatcagctggcatcttggtcttggacttcccagcctctaaaactgtaagaaataaatgcctg<br>ttgtttaagtcacccagtctatggtattttgttatagcaacctgagctaagatgcagaccttctccaacttctccagttttttgattaaatgtaaacaga<br>actgggcaattatcaaacctttatcaatattgagaatatggaggtgaaattctcctacttcctttatatctatcacctgttcacttttcctgttactata<br>ctctaaaaccaaatccaaaaatatatgatttttgaagac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	97843951	97844250	1000639	0	+	8484;Yc1RG194; RIP_Alu_chr5_097_01	GGGATTAGAAATGCAAGTTTGAGC	AGACCAGAGAGGATTTCATAGGG	SINE	Alu	Yc1	catttctctgatcacagaattaattattttgatacctttctttaaataacagcatcatcaaaagctgcatattttggcaatcacttatagattcaattat<br>tggttacctttgattgaacgagtaaccagaatgacaacagccaaggttgttttgttcctattgcctttgtgagcctttcctgggttttacatggtgacat<br>tcaaactggccgtaacaaggcaagtacagttactgtacccattgaccatggactactcttacttagaagctgtttttgagtaaattccaatgtgctacca<br>aactttaattaatcaatttcctgttatatttttgccagctatataaaaaagggattagaaatgcaagtttgagccacctccctta<font color="green"><u>AAAAATGCAATACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATGCAATACAA</u></font>ttgcaacttgccacacaacattaccctatgaaatcctctctggtctcaaaattatgaatattaattgtttcatccagtaccttat<br>gttcctaaaatattttacaatcatgtttagttaatcctcataaaatcccatttaggcgtgccagcatttatattctcatttcataaagcgaggttcagaa<br>aaggtaaataatggtataagtggttgagcaagccagttgaaaagtgagattgaaagtctgtgtagccattctcctttcagcagctcactgtcttccctac<br>aacatttccatgttaaagtgctccagtggacaaattttctttcctgtatctccagggccttattgggccccaaaacctttatatttgcttggtaataggt<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	411	95	NA	intergenic
0	chr5	99174330	99174628	1000640	0	-	16142; RIP_Alu_chr5_099_01	NA	NA	SINE	Alu	Yc1	aatttgttccatattaaactgtagcttgattagtgcaattgaataaaatgatattattaattacagatggaattctattctacaaattttataaagaaat<br>taaataaaatctttctgttattattactgtgcttactatatgtcattaggtctttatttaggaagattagttttgttaatatcgatttaacaagctgtct<br>catgtaaattaaaatattttcgtgatgtcatctctcactggcatcaagaagggtttttatcatatttgacactgtaatgaattttagaaagcttagagat<br>atttagaattactgatataattttaagaaatcagacatagcttttgatgttttctctaagatgagtatttttattttgttttgat<font color="green"><u>AGAAAATGATAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAAAATGATAAAGA</u></font>aattttcaggtggttttaaagactgtatgaacaatgtacagcaagtccacttgttttataaggaatctcataccctggatgcttag<br>ttaatttctatttgccactttagatactctcaaacttcagtaaattttttcacccagtaataggataaatacattatgctttggtagtaaatcacatgct<br>tacaaataaaattaaaatcaactgaacccccttatgtaaaataatttttaataataatgtacactaaagatgcttactataaataaaagtgtagtgtttt<br>gaggtatgcttaatggccagcctaccctagtttcattctttagtcttaggtgttttctcactattacagtgtttgtcaaactggcattcctaatgagga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	99923548	99923838	1000641	0	+	Yc1NBC50;12923; RIP_Alu_chr5_099_02	GGTATGGGGCCAAATTTAATCCA	TCCAAGAGAAGCCAAACCTACAGA	SINE	Alu	Yc1	tttcacctacattttattggccaaaacaaaccataaggctgcacccaagttctacaaggcaaggatagataattctttcgcaaggaagtaaattggagta<br>tttggctatccacaatgcaaacttatttttacctatatgccaactggctttccatagtgaatcaagtcaccatgatgtcagtgtatatatatatatatat<br>atatatatatattgtgtgagcagagactaaagtggaaggtatttgttcttctaaaggaatcggcctctcttcagatcccactaatagttaccatgagaaa<br>gtccttgcctgtgttgttagctcttagtttttactttccaagagaagccaaacctacagatattgtgtatgaaatatccctaattt<font color="green"><u>AAAATGTTATTAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAATGTTA<br>TTAGC</u></font>acagaacacatatttggattaaatttggccccataccttatattttatgacatggaaaaaatcatatactgtagtatcttggaaataataattta<br>tttaataactgctgtcatttataagctagctttttcattaacactcattagaagtaagaatcaaagaataagaattctgataagtggctgggcgcagttg<br>ctaactcctgtaatcccagcactttgggaggccgaggtgggcagatcacgagatcaagagattgagaccatcctggccaacatggtgaaaccctgtcttt<br>actaaaaatataaaaattagctgggagtggtgatgtgcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacctg	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	406	101	NA	intergenic
0	chr5	100984054	100984088	1000642	0	+	32574; RIP_Alu_chr5_101_01	NA	NA	SINE	Alu	NA	agtagagcagttgtttgtagctgctaatggattaggacaaggaaaggggagaataatgagtgtggtctgtgcctccagtttgttggaacaacattgcagg<br>aatcccaatggctttatgctttctgacatttggatttactttaaagagatttgtcccaggatatctgccttccagctgcagctattttagttcagcagtc<br>ccaaactattttggaaccagggactggtttagtgggagataatttttccacagatgcggggcagaaggggaatgatttgtggataaaactgcaccacttc<br>atatcatcaggcattagttagattctcatgagtacacaacctggatcctcacatgcgtggttcacaataaggttcatgctctt<font color="green"><u>AAGATAATTTAATGCCA<br></u></font><font color="red">GACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAATTTAATGCCA</u></font>tggctgatctgaccagaggcagaactcagcccaccacccacctcctat<br>tgtgcagcctggttccctacaggcaatgagcaggtacaggtctggggcctcagggttggggacccctgttctaatagaaatgctgaagtgctagtggtta<br>ggaatataggaggccatatgagaagttatttaaatagagcattacttacaacaggtaataagttcagtgcagcagccctcaaagaaagcatttcaaaaaa<br>taagcaaaagagtttcatgcaagagatagacaaaatttggtcatataacatacagtgccaaattacatcagctccaaacaaagaggaatttaattcaccc<br>tgactctaggtgactctaccccgatccctttctgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	109051006	109051007	1000643	0	+	2455;pAlu5-109081855;1104685722827; RIP_Alu_chr5_109_02	NA;NA	NA;NA	SINE	Alu	Yb8	ttctgtgaggtttggctttatttagttttttgttgagtacttcttgagtacctagccttgttgtcatccatgataagggaacagcaaaaaaaaaaaaaaa<br>aaattatttttgttgtgtggtctaaatctgggctggacagaaaggagttgcagagcaaccatggaagtcaggcagagcaagtcaggagggtactgggaga<br>gctgcaggactgaaggaagaaacagacactgctaacacatcctcctgcccagcttgtttccaaagatttgtcagcttatccttgagaagattttatttta<br>tttattaaactcatatattccatagggagataaatattattggcttaaaatactttgtattgactttcatataatttgtttggccttt<font color="green"><u>AAAAAAAATTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AACAAAAAAC</font><font color="green"><u>AAAAAAAATTTA</u></font>ggatgtgatttttgcagtctagttttaacataatttaaattttacaaaaggttgtttggttgtgttgtcacatttaat<br>attatagagactatgaagaacaaaagtaaagttttagtttttttcccaccgttttttcctttgcatcccaacattattagccagaaggaatgctgcattg<br>aaaagctagaaaacaataggatacataaaagctaaatctcaattttaaaatttttctcaatttttagatgattatgcctggttgaccctgttgtagtttt<br>acttctaggataagataggtagatataacatatgctacatggcagaatagctatagatagatatatttttgttcaggcatagatttttaatatacatgag<br>atttactata	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MAN2A1:NM:002372:2/22	
0	chr5	112881431	112881736	1000644	0	-	239016; RIP_Alu_chr5_112_01	NA	NA	SINE	Alu	Ya5	tgagaagtgaatgattgagctactgtaacattttagttttcctcacatggcttaaaacattagaatactggactctgggaaatgtacaaactgtacataa<br>gagcagaggagagacctgagtctacacaggatgaccataatcaaattaacagtctagtattcactaaagaaatatcaggaagaaagctaaggataatact<br>taaatacttaaaatgcatcataaatattttaaagtcactgttttcagaatttaaattccttaactttcaagtaagattgctaaactcttcagagtaaata<br>ttttttaaaataatggaaaaagaaagaacgcaagaaaactgcagatgaacaaatatctacactttcaaatccaaaaagttactttt<font color="green"><u>AAAAATGGAGATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATGGAGATCA</u></font>attatttttcaaaaaatcaataatgagggcccagcacagtggctcatgtctgtaatcccagcactttgggaggcaaaggt<br>gggcaggtcgcttgagcccagaagttcaaagccagcctggccagctcttcaacaaaagaagagaaacaggttttgcagaagagatgaagtattcagtctg<br>gggcatattagaagtatctaaatccaaagctctggaggctgaggtgggagaatcacctgagcccagaagtcaaggctgcagtgagccacaatagcaccac<br>tgcactccagcctgggtgacaaagtgagaccctgtttcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaaagaataatgagctttaa<br>aaaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:YTHDC2:NM:022828:10/30	
0	chr5	114092083	114092084	1000645	0	+	20676; RIP_Alu_chr5_114_01	NA	NA	SINE	Alu	Yc1	taaggattgtttgatattttaaaaccttggtaacttacaatatcaacaatatattccttggttgatatcactataaactctctcactggaagattgcttc<br>tattccttcaaaaacacacttagaaccctgcttcctggcagatagtagggacataaaaagctgagtcagcccggtagactttctaccaggagaataatta<br>ctaactggcatgcagcctgcagaaaaaaaatctatgagggtggaaactatcatttacagggaacctaatctcaggagtaacagagttaaacatggtgttc<br>tacatttctattcttgaagcgacccagggctaacacctgccaaggttttaaaacattataaaaggatatttagtaatggag<font color="green"><u>AAAAAATAATAGAATATGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAATAATAGAATATGT</u></font>taatgtcatccccattttattttttaaatgtgatagagattgataatatctagataactagacaaactaatggctaaaag<br>aagcatacaaactcaaatgccaagaagcatgcaaacacaaatcaaaatttgaggatgaactcaccccttgtgaagttttcttcctgaaagacctggggtc<br>cagaattgttttttccacaacacttaaaaatgtggctaaagcttccctatttatttccggggcaaagctgcatcctgtcccatgctatatctcaaaaatg<br>agaagcagaatccgtacttcccatgtttggtggtcacagtccacctctaacaagattgtttataatgatgagaggtgttccaccaacaaggctcttttgt<br>a	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr5	115894149	115894457	1000646	0	-	Yb8NBC597;238944; RIP_Alu_chr5_115_01	TGAGGTGTTGCAGACGATGT	CGCATGCTTTAGAGAATACCC	SINE	Alu	Yb8	ttgggaccactcttcaactttagggaggttcataccataatatgaggtggctaataggaggaagacggaagcacattcattgcatctataaaaaccactg<br>ttaaaaatgggcaggaggaccaagcgctaaatgatctgttcatgtaaaaatcggggcatatatggagccacctagttcctgtttatttcattccaaacaa<br>ttttactttatgaaagtttttaaattctgaaattagatatacatgtgttctccctctccccccggctcaatgttgggcatatttatatgagtgtttgtct<br>cttaaattgccatgtgcaactgaggtgttgcagacgatgtaattcacaaaacaaataacgcttaaattgtgttgtttttatactattt<font color="green"><u>AAAAGAATCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAGAATCCTT</u></font>aaatgatgggtattctctaaagcatgcggggcttaaaacctagatgatggattgataggtgcagcaaaccaccgtggca<br>catatatacctatgtaacaaacctgcacattcagcacatgtatcccaagacttaaagtaaaagtaaaaattaaaaaagatgggtattctatatttatctt<br>tcatgttacatttttctttgtggggtttctaaataaaacttgtaacatgaatgttttattctcattctgtattttaaaaagaagctgagtaacaaaagga<br>aaacaaaacaggattggaaaatcaactattttcagggggctttaacaaactgaatatctagaaaggttctagagaacctttatgaaactgtttgtttgga<br>tgtcttatt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	429	108	NA	intron:SEMA6A:NM:020796:1/19
0	chr5	119015158	119015464	1000647	0	-	pAlu5-119045917;4754; RIP_Alu_chr5_119_01	NA	NA	SINE	Alu	Yb9	taactttttaaaaagcaaatatttaagggccagtagaatccacatatcttccatacggatttatctaatgtcaataatctacatttctttgcatcttagg<br>aagtagtattctcaggctgaatcgcaataagcctccatggtaatcacatcagttatcaataatttcaattctgtggggattttttttagcttagttaact<br>caaatataaatccccatattaaatattctcaaacactatgttctctggctttatcactagaagaaagttgtaccatgctttaaaatataatgaaatacaa<br>ttttttaagagtggcatttttagcaccacttttatagagcacttggtgcaggaatcaaaattattagcagtgccttttttgcttgtt<font color="green"><u>AAAGAGACTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAGACTTCTC</u></font>acttttggctgatggctgcatctctaaatagattttacactccctgctcagagatggaaaagcacatacagctctcttca<br>cattcaaataacaatctcttcactcatcaccaccgaagtccaatacccatccagaacctatcaaattaattaccaaagcttttctgctctcaggttctca<br>cagataaagcatgcctgtgagggcattttacacgttttatcccactattccacaggatagtcttacattccagaatgtacctaaatggacttaaaagttc<br>ctctcctgtgatcctgtgaattaatcataatgactgccctggggaaaaaagagagtcctcgataggagagatccaaaaagaactgctgcttggtaaaagc<br>tccaggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	122274354	122274663	1000648	0	+	7013;pAlu5-122305116; RIP_Alu_chr5_122_01	NA	NA	SINE	Alu	Ya2	agaggaggaccctctccccagtgagtttggacagttcttagctattcatggtcaaaaaaaatcctagattttccaggattctctcttctctcagtttctg<br>cagctctattaataattttacctattcttataattatataatgaggtctactagcattaatagaatagaaattcacaaatctctcaattttgaatattgt<br>tggcagccttgttaaaatatttgagacaactttacagggacatagagataaaaatagctttgtggagcagagttttatttgggatacactgtctaatttt<br>atgtattatcaaggggatagcagctgctagaagtctcctttacttgcccccttgtgattgtattcgatttggcaaaaaggtaacttt<font color="green"><u>AAAAGGCAATGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGGCAATGAA</u></font>atacaaataacaatggggtataaaaataaacataaatctgtaattttgactgtaagattgtgtgctaagaagggttg<br>aaatgggtcaaaaatttaatcagagtactcaggcttgactgactgctgctgccacatcaacaaccttacccttttattgcagttttggtaccctcgattt<br>ccatatttgaatcttgtgacatgctttgaatgttagagtttaacataaaatattttccctttaaatgtagttaaatctgttgttacttaattctcttgaa<br>atatttaactatattacccctccaaaaattagatttgtttattagcaagcatgtatgttgccttgttttaataggtgtttcttaggtttgtttaggagtt<br>gtagcccctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SNX24:NM:014035:2/7	
0	chr5	128314856	128314857	1000649	0	+	238115; RIP_Alu_chr5_128_01	NA	NA	SINE	Alu	Yb8	aggtataacttaaaaatagaaggcaaaatcattataaagccaataatagaatgcatacatgatgatggtcccataagattgtaatactctattgtacctt<br>ttctaagtttaaatatatttaaatacacaaacacatattactgtgttagaattgcctgcagtgttttcagtacagtaacatggtgtacaggtttgtagcc<br>taggagcgataggctatatatcatacagcctaggtgtgtagtgggctatatcacttaggtttgatcaatgattatcattcagtcttgtgtgaattaaatg<br>taaagaactcaacagaataccaggatcataaagtatattcaacaaatggatgcaatcattatttttaactgcataatggcagagac<font color="green"><u>AAGAAGTCACTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGATTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGTCACTTTT</u></font>ctcaggtctcttcatttgagatttgttgtatggagggaaacccacgtagtgtgttacacaaccttagtgagttggc<br>tttaaacagctttcttgtcctctccagtagcagtacatccataactacttcccaaccctcagtggccaaggttggaatgctctcagacacaagtttggag<br>tgaggtcgttagctcttctctggccaaaaagaagaaggttcttctactgttaataacaaagaggtcatgagggagataaccctgatggggtctgagtctt<br>gcagaaatactaccttagtattcactgcgttttaaaaatatatatatcatttacttactaatgagtctgtctgtagattgctttggtctgcatttactct<br>tctaatttca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SLC27A6:NM:014031:2/11	
0	chr5	142355013	142355014	1000650	0	+	16830; RIP_Alu_chr5_142_02	NA	NA	SINE	Alu	Ya5	atcgtttcaaatctccattggccctcccctacagttctgaaagattctgtcttacacatggggtggtcgaggaggggaggcaggtttgtaatggaaatga<br>tggtagactgagcaaggagatgtagcatctgcttcccttgtgctgctaaacggcatggacttggaaaagctgctcacccctcctaggcctgtggttctgc<br>agctttaatataaaaggggtaggactagagaactgcgtctacagtagtgattttcaaattatgtttcaagaatctttgggactctacagttgctgaggtg<br>aaagaaacctttctcccagcttcttccagagctgccctgctttcatcttgctggtgtactggggtttcacattcaatttttatc<font color="green"><u>AAAAATAGACAGACAG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AAAAATAGACA<br>GACAG</u></font>actaatagttttaaaaccatcagattaaatgacctgaatgtggttattgtttcttacacatagttagctacttaataaatagttttaattcaact<br>tagctttgatcatttagcaaactataaagatgatccctgaaagtttagtcttagctttgttctttagatgtttcttgtgtgtatcatctcccaatcgaca<br>gtcagtaaacttcatcattcccagtacctaagattgcagtgtgtatacttgtgtatactttattacccagcgtccctgagattacttaataaaggatttt<br>ataggataaaagtagctccagtctttgtgtcctgggttgcctggagagtattaagaaaacataataaaattggttgaggtgtaccatac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ARHGAP26:NM:001135608:11/23	
0	chr5	170857511	170857817	1000651	0	+	13564; RIP_Alu_chr5_170_01	NA	NA	SINE	Alu	Yb8	ccagcactttgggaggccgaggcgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtgaaatcccgtctctactaaaaactataaa<br>aattcactgggcgcggtggcaggcgcctgtaatcccagctactccagaggctgaggcgggagaatcacatgaacccaggtggcggagattgcagtgagcc<br>aagatcacgccattgcactccagcctgggcaacagagtaagactgtgtctcaaaaaaaaaaaaaaaaaaattgtaccaactcatagggtttgttctgggc<br>attacataggaagacatccctcaagagattcctagcacagaggaagtgctcaacacacaatgcctgattaagaaacaaaactaaact<font color="green"><u>AAAGAAAAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGTAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAAAAAGAG</u></font>taatgattgttactaatataatctttttctgagataaatattatcaacagtccccattttgctgatgggaaaactgagag<br>ctaaagaagtcgaataagtgggttgactgggggtgaagccaggtgacagctaaggtcagccagtgctggttcctgtgtgagtgttgcgtgtgtggtgtgt<br>gtacataggtgatgtgtgatgtgacgcacatttgtggaaggtggaaatgggggccaggaagaaagaggaaaatcccaaacatgcttttcagccatgagtg<br>ggctggagaggctaaaatcttcaagccagagggagtgatggaggctgctggatgctctggtgtgaggtggtaccttggttgatctctggaagctggtact<br>aggctgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FGF18:NM:003862:2/5	
0	chr6	4050258	4050560	1000652	0	-	404;pAlu6-4040151; RIP_Alu_chr6_003_01	AGCCTGTTGTTCCAGTACATATGAC	CAGTAATGTTGTACGAGCCAGAG	SINE	Alu	Ya4	taaacttaacacttatttccaacatttcaaacacattaaattcattttaataccagctcagtgtgtggtattaaaacacacagatatggcaattaacttt<br>ctattggaggaaaacaggaacaaattaaaaaaagacagattctcatcactctgataaattttcacttttttgcaggtcaccatagtgacagctaatcaac<br>atgatcctttcatttctcaactcgtcttcagataaagcaaaggacggcataagacagacaatagagggaaggagtttaagttgttattggtgcatacagt<br>aggtactaaaatgcactgaattaaaaataatcagcctgttgttccagtacatatgacatatggctataattttaaaatccagtc<font color="green"><u>AAAAACAACTGTTTCC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTATTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAACAACTGTTTCC</u></font>attactttataattgcaatacttgttttacacattctatcatgtatcactttaaaaaaatagtttaaaaatatgttcttct<br>gtaagtatccgtactgttaaaggtttcctcacgtcttctgaacttacatgagctcattgtttctgatgatctttacagccacttcttggttggctcttgc<br>attatctctggctcgtacaacattactgaatacaccttgcccagtgtagccatacacattgtaacgtttatctaggacttcacctatgttcacacctaaa<br>aaggcaaattgaaaaattagaattctgactataataaatagaatcagaaagtaggaaacacagtgcagtcatttaaaaattgtgttaaatctctactatt<br>tgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	596	291	NA	intron:PRPF4B:NM:003913:9/15
0	chr6	8227940	8228241	1000653	0	-	Yb8NBC589;3936; RIP_Alu_chr6_008_01	AGTCTTAATGGGCGCTGAGA	AGTGCCTCACCCAGTAGCAC	SINE	Alu	Yb8	agcctgagcgacagagcgagactcaatatcaaaaaaaaaaaggaaagaaaagacacacaagtcctcagctaactccagcacactttctttaacatagtaa<br>attactttaaaataaatttactaaaatatatccagttagctagtggaatttcgttggggtttgaggtttttcctgagttgtttaaattgactcagtcatg<br>aatgactttgtaaattaaaaattaaatggactttcaaaaaataaaatacatttactcaaaataaaattacttaaaaagaaattcaggagtctttactatt<br>aagtctcacgtagcttggactaatagtctccaagttcagtgcctcacccagtagcaccatcactcagagcaacagaagtctctt<font color="green"><u>AAAAAACTTCACAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAACTTCACAGTA</u></font>aattaagtacaattagcagagcaaacatcaacactaccagcccaggaaagaagtaatcgctcagccttcattctcagcgccc<br>attaagacttgaaccatttctcaaatcagtgatctttttaagtgatcatcatcatgaacgccctcctgaattagggcctcctcattatggggcacataat<br>gatattaaacttcagcctttgttaagaagtggaggtaataaagctttccaagaagcgacagcttataattttgatccaaactataaaaatagctaagtgc<br>ttcctaatgctttcataagctaggctttttaaaatgttcctttaagaagcatttccttgaatgacagacataaacggctggaagagacctttgaaagcag<br>at	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	472	154	NA	intergenic
0	chr6	9014833	9014924	1000654	0	+	33366; RIP_Alu_chr6_008_02	NA	NA	SINE	Alu	Ya1	atatgaaaatggcataaaaataaatatagttatgataacgatgtataatacatttattggtttattgttttttcctttaatattttctcatgaaccctat<br>tcaattgtacatttctcacaacaatttaaaacaatgacaagacttcattttatttgttgatatttttattcattgttaaatatttagagtaactattttt<br>aaaataattttgataaagttttcataaatgtaatgattcccatcaatgacttactattaccattgtagtggtactacagtgtgtggtcatttcaggtttg<br>tgatgcacattgacagcttgtttcctgatgttgtcccaactacattcctactggcagaatatgagtgagccagtagggcagggt<font color="green"><u>AAAAAATGCTCCTCAC<br></u></font><font color="red">AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATG<br>CTCCTCAC</u></font>cctaaagatacatatgtcctaattcctagaatctgtcactgtcaccttttgtggaaaaatggtctttacaggtgtgattaagtcaacaatct<br>tgagatgagaagattatcctacattatacatgtgctcactaaaataatcacaagcttccttacaagagggaggtagagggagacttgacttcagacagaa<br>aaggagaaggcagtgtgacacagaggcagagactggagtgatgtagccacaagccaagcaatgtcggcagctgacaaaagatggaaagggcgagaatgaa<br>ttctttgctagaacctccagcgcaagtgtgtccctgctcaaaagacatcatttttcagagagtttacttgtcatgatattaagtttatccat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	23300377	23300684	1000655	0	-	30935;10655;pAlu6-23362812; RIP_Alu_chr6_023_01	NA	NA	SINE	Alu	Y	tcacagttgaatacagaagcttttataagaaaccaacgaggactaggcatctcatttgcataatgtgcagatttctggtagctccaccccatcctcctag<br>tatgcatgtgggcccttagcttgagttactccatattgctttgttccccttactgtgtatgtgtgaggggacaaaattttccattttgggcatgtctggg<br>taaatctcctgtgtagcctttcttacctatgaggctgtgggcatgcctcaggcaagcctccctgtgcaagttcccttatctatgcctgcaggttgttctt<br>ttgtttgaaataattcaactgaagacccatcctaactgcctgcctaaccagtttgttccttcctcctctctcaatttcagtttttt<font color="green"><u>AAAAATATTTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATATTTTCTC</u></font>aggtggtagttaaggtagcacaagcctctaatattcaaggttattattcttgttattcaagaatataatattcaaggt<br>tattatattcttataactttgagatagattttaaatttatgagatcttatctgaggctatctacctgaacattaacaagttgaagaagatatataatact<br>tataaacaaatattcactgtgaaattatctgtacttatgaaaaaacgaaaattaagttttgttaagtatatcttaaatgttaggacccttaagaacatga<br>agaaatgtttaagatataatttttaaataaattaaagcaacataagtatctagatattttggctgcaactttataaacatgttaaacatatttgttgaat<br>ataagaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	28190208	28190532	1000656	0	-	pAlu6-28252653;53100; RIP_Alu_chr6_028_01	NA	NA	SINE	Alu	Yb8	agaaagaaggaaagaaaagaaagaaagagagagaaagaaaggaaaagagggagacagggaaaaaggaaggaaggaaggacttggaggattggtgacaaag<br>agattattgatggaactagctcgtatgtggatagatctcttagaatggatatcaaatgtacaaatatttgtgtcctgtatgaatcttcattaacccactg<br>tgtcagagggtttcagtaagcaagtgaacaagatgatggtgaaacagaacatggactcctcctcttcatagcctactgggatccctccttaagcatgaaa<br>ataaaggaaaaattgtgagtcccttcaagggaaattccaggcaccctgcaaccagcaactagggaaataaattaataacctgctaagc<font color="green"><u>AAGATGATAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATGATAATA</u></font>atagcataaacaatagtcacccaagtgagtcagagtcatgagatgtttgtttccttatagaaa<br>ctaaagataacatttgacatatgtccttgagttgagttgtttttcagaaaccaggacccccaccagatggaaaatgttgatcactgtcatatagaccttg<br>acagacaggaatcagaagatggataagcaagttctagaaattttccagcctttagctcacattggagaaccccctcatccatgccttaaaaactcttgct<br>tgtaagccatcttacaaagagttcagatcttaagtgttagtggcccaataaccttgcttggtgctctacaataaatgccttactttctctcactgcaaat<br>cctagtgtcaatgtttgactttgct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	37294973	37295276	1000657	0	+	238692; RIP_Alu_chr6_037_01	NA	NA	SINE	Alu	Y	cagaaaaagaaatcttaccacacagaggtgaatatcacaaattttaaaaaaattgattagtatgcattttattttatgtattaatatttaaaaccattat<br>tctgaggagattgatggggttcaccagacagcccaagagtctaaggtacagaaaagactgagaccattataaagagagcctgcctaacttaggatacaag<br>tggtctacctgaggagaatgttagcaaaaagaggcaacaccttttccagttgttgtgggatagggacatggtgcgggaaggaggtaggaagcagcagaga<br>tgggtaaaaggggccagaggccagggagtacatggtggcatgggggtgggggcatgtagtatggtccaaggtcaacatttt<font color="green"><u>AAAAAATAAGTTGAGATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGACTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAATAAGTTGAGATAG</u></font>aaatgatggttctctttcaaacaaaacaaacaaaaaaagctttgaggcagacaggactgaggccagaatagaaccaa<br>gagggaattactcctgtgagaggggaatattccaaagatgttccgatcagctaaaggcagagtttttaaaagcagagcatctgctggcttgagtgaatat<br>caataactggttgaataactggtctggttgagtgaatttccgtaatcatgtgactggaggggtttgcctggagggttggagagagcagatgccagcaacc<br>atggaggggagagtggggaccttgggatgtgcactcctccgggggttcaccaccatcatgacggctttgagttctgttcttgggcttggggatcaaaggg<br>aaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TBC1D22B:NM:017772:12/13	
0	chr6	44613499	44613800	1000658	0	+	pAlu6-44614813;238284; RIP_Alu_chr6_044_01	GCTTAACACAACCCATAAATGGCTG	AAATCCTCGTGAGCTGACTGTTTCC	SINE	Alu	Ya5	agtgcaaacgccaagatgctggataggacattcagagtgtcccaagagactgagggctgcttcttttgcagaggagtctttcccttcacaaccagatttg<br>tgtcaacggtgagcgggccctctgcagtccatttagaaaattactcatacggtcctctttgtcctctttccattccttgtgtcctgacaactcttcacga<br>cccccagttattctttggaaatgtttcttggatctctcctggtctttttcttcatctgcaatgtgaggataatgatgataacacctttgcaggtgcttaa<br>cacaacccataaatggctgagctgagcttcagtccatgctttgggtccccagactgtgctacttccaaaaccaggcttgtctcctc<font color="green"><u>AAAAAGACAGTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAGACAGTTGC</u></font>tccttgagggtagggactgtgtctgccatgtcccctgtagcccctggcatagcctgctgttggaaacagtcagctcacgaggat<br>tttcctcatgcctgttcatggtggcttcagcctctctcgcctggcatagaaacccaagggtctccctgctccttctcccaacaggactgctgggcagagg<br>aagacccccttagttggaggtagccaggctgggttccctcctgtgcttgagagtgtgctcccattgacatgtccaccactgtggtttctaggagctgctc<br>tgtggatagtgtatgtgtatcccagcctcttctccatctttctcacccctcctcctcttcctctttgatagtctgagttccaggtccacatgtggttcat<br>tt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	508	206	NA	intergenic
0	chr6	47778241	47778242	1000659	0	+	14170; RIP_Alu_chr6_047_01	NA	NA	SINE	Alu	Yb8	cagctcggttcactggttcctattagccgtttatacgaaatatagcaattgctctgctggaggaggacagggctatttcttttctctagagggtcagctt<br>tcggggaaaaagcaggcggtagagctgaagcagtgaggagcccttaggtgctagaggttgaagcctctttgtggaaggaatgctgaagagatattgagtc<br>gtagattttagaaggggctgcttcagagaagagcagacgggtggatggtagccaccagaggtttctttttatctttacaaagaagccaaaaagaaacctc<br>atttctctttgttgttattaagaagttatgcaagtgagtaatgtgcaggtctgcagagcaaggttaagtgatgtgaagctagttta<font color="green"><u>AGAATTATTGCACA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATTATTGCACA</u></font>attaaactggattaatcaatatccttattcttttcttttctgagccctgaaatgtttttgcttataag<br>gggacaccctcttgggaaatattttgaaatcaaataataaagctaatgtattgaatatgggattgtggaaataaattttgggtaattttaacagtctatt<br>acaagttaaactcattttttcctcctgaattgaatcctctgagattttggtagaagttggtgaaccaaaggaaacaaatgtggccaagagctctttctgg<br>aatgttattctttcctacacctgggtatccagatgtagtctcccatattttgtaaacagcactgctccaccctggctgtgtaatggagacacctggggaa<br>ttttgaaaaatgactgct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:OPN5:NM:181744:5/7	
0	chr6	50765972	50766267	1000660	0	+	7113; RIP_Alu_chr6_050_02	NA	NA	SINE	Alu	Y	atgaataagcatgtcctgacatggtcagcctcctccaatgataagaagccttccctttatagacctagcaaaatcctaaagtcttggaagaaggggagaa<br>acgtatgtatgctctgaagaaacctgtcatcaccacaccactggatcctccatctctacctatttgggaagaccctaaaagtaaagcaaaacttttgatt<br>caactttcctctttcaggccaaagaagaatagcttggtcttcaatcatggtcattccataaagcagtccaaactcggaagactgggaaaatacaattaat<br>atacttttgatacctaaatgtagtaggtggctggagaaactatcttactgtgttaagactctcagagtaatgtcgtcaatgagtt<font color="green"><u>AAGAATAGGTTTAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>ATAGGTTTAAC</u></font>aggaaatccaaaatcaaaatggcttgcatgagaaaaagtttatttctctcttatataaaagaagtacagaagcaggcagtccagggttg<br>gtgtagtgacttcactcatcagtagtccaggcctctttctgtccttcagctccactatctgaacacaagcttccatctttaagtttcaatacatggcatc<br>gtcatgcctacactgcagacaagaggaatgagaaagagacaaagaactaaatgtacccgtctcagatgagttgctccctttgaacagccttcctagagcc<br>tcacaccacattgcacttacagttcactggttatgtgaccatatgaccatcagaggctggaaaagacaatctttcagcaagttttattcctagtaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	51256301	51256602	1000661	0	+	Yc1RG65;4148; RIP_Alu_chr6_051_02	GAAAATCTTTGGACTGGATCTCAA	TTCTAGAAACAAATGCAGCTATGC	SINE	Alu	Yc1	acctttctcagagacatttgccttgttagaaaatattatctttatgaaaagtaattatataatagtgatgcttcatacacattaggggaaataatttttg<br>atgaggaacttccaatgtctctcaaattttgttgccatatattggtcttgttctggttctttcattagttgcatttagtatttttcagctacttgtatgg<br>tcaaatcatcattattctgagtgagtagaaaatctttggactggatctcaaaacaggatttttcttgtggtattaagttcctattgttgtcataataatt<br>accacaaacttagtatctcaaaacaacaccaatagattatgttacagttctgtaggtcagaagttcaacattgttgtcactaggct<font color="green"><u>AAAATTAAGGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAATTAAGGTGTC</u></font>agcatagctgcatttgtttctagaacttctagaaaaggatccattctcttgacttttccatcttctaggggccacccacattct<br>ctggcttatagactctttccttcattttcaaagccagcaatatgcatatctctgaccttacttctggagtgacatcttcctctgaacatagctaggaaat<br>aatctctgctgttaaggattcatgtaatcgtattggactgacccagataaccctggatacctcctcatctcaaggtctctattcttaattagatctacaa<br>agtttctgtgccatgtaaagttatatgttcacaggttccagggcatagacatctttaagggctgttattctttctaccatactcattataccataaaata<br>tt	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	57	514	198	NA	intergenic
0	chr6	54556450	54556770	1000662	0	+	52977;pAlu6-54557746; RIP_Alu_chr6_054_01	NA	NA	SINE	Alu	Ya5	caaattgttgggattataggagtgagccaccacacacccagctgggatgtgtttttgaaggacaatttaatctaaatctgtactgttcaatatagaagca<br>actagccacatgtggctattgagcacttgaaatgggcctattctaaattgagatggactacatgtataaaatatacatggcttactgagaagaaaaaatg<br>ttatatatctcaataataattttatattaatcacatgttgacaaatgtaacatgatgaaatgctattctggatatattggtctaaataagcattaatttt<br>tttaactttttaaatatggtcacaaaaaatgtaaaattacatatgtggctcatattatatttctattggacagtgttagtctgaat<font color="green"><u>AAAAGAATGTCCCA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATGTCCCA</u></font>aaatacattcaaatatgaaatcattaaaatcaatatgcttaagtctcctccaccccaaaatctaa<br>caatgttttctgatacgtctaattctacagatagtggctcctgtgtcaaaactcaggttttcattgggtatttagaatgaaatgtctggaataacaattt<br>gcttcctgaggaaattttatagaagccatttgctagaataaataggcttaatctttccccttcaatagcctacaagagttcccagcatactcagtgtatg<br>ggttgttctaataacctcttcccatcatcccattgccttccaaatgtgctaaggatatataaagcagaatcaagttcattcgtgtacattaatttgaatg<br>tttctatgtaccatgtgctgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	54864379	54864690	1000663	0	+	14392; RIP_Alu_chr6_054_02	NA	NA	SINE	Alu	Ya5	tattacacaaaattttattaaatgatacatagggtgttttctttttgcattattctttctggtttctaattccatggttaataaagtgtcatggcattgc<br>aaatgagacatgtctaagataaatttggcagctggccatatgatttgtatcttggggcctaggcaggcggggtttttgtatagatcttctgagttgccat<br>ataggcaaacccatattactccaagggtgcctgaaaactagttctattttgttactatgaagtaattgactcctacatgtgactctgaaaagggaaatga<br>ttatttgctatttcagtgagcccattgtagcgcttaatacaacctttctgtctaagtcgtttccttggttttatatttcattcct<font color="green"><u>AAGAAAACACAAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACCCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAACACAAGTT</u></font>atctaagcatactttacaatgaataaccaagaacagaggaaaggccatggcaggtagaataaataaaaagaaa<br>agtttattcatatattttttacttatcatttgaatttggaacatgacttttttaaaaacaaacaaacaaaaaaccctactttactttcttagtccacttg<br>ggctgctgtaacaaaataccataggtggagtagctaacaaacaggcatttatttctcacagttctggaggctgaggagttcaagatcaaggtgtctacag<br>atttggctcttgataatgatcctcttcctagcttgcagacagccaccttctcactatgtactcacatgactgttcctcagtgcatgctcatggaaagaga<br>gagagagagaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	75957800	75958103	1000664	0	-	pAlu6-75907854;11446; RIP_Alu_chr6_076_01	NA	NA	SINE	Alu	Ya5	gtattacaaagtgttacattcatagtaggtaaccggtaattattgttcaatggggaatgactcatgttcatgttgatgaaaagagtcaaactctataaaa<br>tattttaagagatttattctgagccaaatatgagtgacacagccctcaggagatcctgggaacatgtgcccaaggtggttgggatacagcttggttttat<br>atatttttgggaggcatgagacatcaatcaaatacatttaagaaatacattggtttggttcagaaaggcgggacaactcaaagcgggggacttccaggct<br>ataggtaaatttaaacattttctggttgacaactgattgagtttatctgaagatctgggatcaatagaaaagaaatgtttaggtt<font color="green"><u>AAGATAAAGGATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGATAAAGGATGTG</u></font>gagactaagttttattgtgcggaggaaactctcagcggactgcagagagagcaggttataaaatgtgtcttatcagactta<br>aaagagtgcctggctcttagttgattatctcctggatctggaaaggggaaaggagattctctatagaatgcggatttttcccacaagaaactttgtaggg<br>caatttcaagatatggcagagagacatgttttggggtaaaacattttgattttcttcctccttatgccagagtcacatgggaaagtaagtcataatatac<br>agggttaaataaaacccatctgatgagaatttgtggtttgtagggcaggactccccagaccctttagatatgaatttgggcaagataaaaaaaaaaatca<br>gaga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	86026366	86026669	1000665	0	+	10265;pAlu6-85976421; RIP_Alu_chr6_086_01	NA	NA	SINE	Alu	Ya4	ttgaagacatggagcagtgtgcttgcagttacactgctactgtgtggcaaagccagggctcttgtgcatcaccccacacttcattccacaggagttcatc<br>taattatcctcacgaattacaccatggaaagtcttcccttgcacacctcagccattctactaaaagcttctgagttataaatccaaaagggttgttcatt<br>tatatatcattagcttacattaattgagcgcttactatattatatgtctggtatgctcgtatttttcatgtattgtctcttctcattacaaggtgatatt<br>gtttgaatatatgtccccaccaaatctcacgttgaattgtaatctccaatgttggaggtgggacctggtgggagatgtttggatcataa<font color="green"><u>GGGTGGGTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GGGTGGGTCCC</u></font>tcatggatggcttgagccatcccttggtgataagtgagctctctctcagagttcacacaagatatggtggtttaaaagtgtgtgg<br>caccttcccccacaactatctctcccttgctcctgctgtcatcatgtgatgtgcctgctttcacaacaccttctaccatgactgtaagcttcctggggcc<br>tctctagaagttgagtagatgccagcatcatactccctatacagcctacagaaccatgggccaattaaatatcatttcttataaattactccgtctcagg<br>tttctatttatagcagtgcaataatggcctaatgcagaaaattggtaccaaggaatgggacattgctataaaaaaaaaacctgaaaatgtgaaagcagct<br>ttgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	92808011	92808320	1000666	0	-	pAlu6-92758067;239078; RIP_Alu_chr6_092_01	NA	NA	SINE	Alu	Yi6	gtatagaagtgaaaaagagtagcatcaatagatttaatacaacaaatattttaaatgttaaactcaagttcagcatggttacttaaattttagtgctgat<br>ttaccaatgacgcagtccataagactacaagctctgtttttatctgaaatttggtatcatataaattactttcctcagagatttaaaaccaccttttgaa<br>tgttgttttgttcatagcacaccttgactctttagcattttgaagatatgcgattgtgccttaagcaaaacctgctcttgattctttgataaattgattc<br>aggccccagtgggcgcggtgactcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcagaagatt<font color="green"><u>AAGACTATCCTGGCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG<br>AAAAAAAAAA</font><font color="green"><u>AAGACTATCCTGGCTA</u></font>acaaagtgaaaccccatctttaccaaaaataccaaaaattagctgggcatgctggcacatccctgtaatcccag<br>ctacacaggaggctgaggcaggagaatcgattgaagccgggaggcggaggttgcagtgagcccagatcacaccactccactctagcctgggcgacacagc<br>aagacactgtctcaaatatatatatatatatatatatataaatttaatttaaaaagataaattgatttatcaggttaaatctttttttaaattgaaaagg<br>gttgtcttgcttgttctgtttttcattaaagtaatcagtctatctatcagcccagaaatcagaaatcgatttggttacattatcttggtttccattgact<br>cagggctgag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	93524554	93524752	1000667	0	+	Yi6AH116;6416; RIP_Alu_chr6_093_01	TGTGCACAATTAATGGGATA	TGCCTTACTGTTGTTGAAAA	SINE	Alu	Yi6	ctcagcctcccaagtagcggaaactacaggcacgtgccaccatgcctgactaattttttgtagtttttgtagaaacgggtttctgccatgttggtcaggc<br>tggtctcgaactcctggactcaagtgatccacccaccttggcctcccaggggtctgggattgcaggcatgagccaccacacccagtcataaaatcacatc<br>ttaaagtatttggaattggaaaccctcttagaattgatgtgcacaattaatgggatagggttctttttttctgaaaaattattattaaataagcagtgta<br>cccttcgattaatgcttttttaggatcgtgcaataaaaatgttttaaaataatacataaataagaaaaaatcacttataatatc<font color="green"><u>AAAACATAAATGACTA<br></u></font><font color="red">AACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAACATAAATGACTA</u></font>gaaaatgagacagctttttcaacaacagtaaggcattattgaaaataatttttcattttgcaacatacaatgaatgtagaacata<br>aaagttatgtattatagaaattcacaatttcaaaacatattgctataatgaaagttctctaatacggtgaaaaggcttatttctcatataatatagggag<br>aaaaaattctggtattcaatttaaactatgaccccaataaaggaatcactaagagagaatgttgtcccaatttagtaagacaataaagagaatgagtgcc<br>acaaaatattgaaatagtatgattaatctctaagaaagagatttagaggtactataccctctcattgctcagatttcttttgtcctataactcatgaat	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	413	198	NA	intergenic
0	chr6	106928846	106929148	1000668	0	-	pAlu6-106928873;31794; RIP_Alu_chr6_107_01	NA	NA	SINE	Alu	Ya5	ctttgtttgacccccaacaggaagcctgccgatcaatgagagagaactggttgatgcagtccatctaggacacagtaggatgcagaagggtggagaggga<br>cggaagaacaaacagagggtctccaggagagaaggtaaagatatcgagagggcttctccctctctttcagagagaggagatgcagatgagattagggaaa<br>ggaagggctgagacctcagtcaccatgaagaccagcatggggtggcaagtgtaccttatctacctctcatgatttaattctatggctggtaaggtttggt<br>agttgttctctttataaatttagtttgtcagaatgacagtaagctaaactttcacctccattggagcagccaattttttcttttctt<font color="green"><u>AAGACAGAGTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGACAGAGTCTC</u></font>actctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcccaggttcaagcgcttctcatgtc<br>tcagccttccaagcagctggattacaggcatgcaccacccttcctggctaagttttgtgcttttagtagagacagggctttgtcatgttggccaggctgg<br>tctcaaactactggcctcaagtgatccacccgcctcagcctcccaacatgctgggattataggcgtgagctaccatgcagaggtgccaaatttttttttt<br>tctttttgagatggagtcttgctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccgggttcaagtgattctcc<br>tgc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	112203868	112204168	1000669	0	+	Yc1RG303;19328; RIP_Alu_chr6_112_01	GCAGCCAGAAGAGATCTCAAATA	TCAGTTTTGCGTCTGTATGAA	SINE	Alu	Yc1	gtagtgagttcaaaatgaactcacacagatatagtttataatatataatctatgtttatgtatgtatttatctctatataaatatatgtatatttttaca<br>tagatgtatcttgtatatatatatgtgaaaatacctgggactggctgtctgaaccaaaaagagcagaaatagttacttgggatgtgtgaatttggcaagt<br>acaggtatagaaactcaaatctctgttacatattggaggtttaatttttctagcttgcaaatcaaggtcaaccacccaatggcagccagaagagatctca<br>aatagacataaattattcatgagcttacagaagttaaactcattttaccccaagagaatcaaatttactaagaatggtctgtt<font color="green"><u>AAAAAATCAGAAAATAT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAC<br>A</font><font color="green"><u>AAAAAATCAGAAAATAT</u></font>ttcatacagacgcaaaactgaaatttatttcatcctgcatttcatttatcatttatttcaatgaattggctttggataagcc<br>ataggcattccccaaattctttctgtctgtctttcaataaaaagaggaacattcaatttctattcaaaactgaaattagacaaagacactcttttcacca<br>ctaatacttaacattgttctgaaaattctagtaaatgtagtaagacaaaaagaagaaaccataaatataaatgacaaagtggtgacaaaattctatcaat<br>tcctgttaatgtaattatctacctggaaagaccacgagaatcaattgaaacactattaaaactaataaatgaattcactatggagccagttgccaaagat<br>c	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	63	458	140	NA	intergenic
0	chr6	116750830	116751132	1000670	0	+	30968; RIP_Alu_chr6_116_01	GTCTTGAACAAGTCAGCGTTTCTG	GAAAAGGCAGCACAGTGGGGCTGAG	SINE	Alu	Yi6	ttgcccccattagtcaggagccaagtcttagcctgggacctatatttaggcccagagctggttagatctgggcctctggaagccccacacctgccacata<br>gtaggccatggtagcgtggtcaacatgtttgtggaagtaaagcaatgtggctacacccacaccaggaggcattgggcttaattttattctcaagggttgc<br>gtgttttaaaggaaaaccttaaatctaaagacctaggttgagattaaagttgtgttcatttttagtcatgtgccagaggtcttgaacaagtcagcgtttc<br>tgttttggggcaatgatacataattgggttgttaaaaggattaactaagattctgttcagtgctgtgtaagttataaatgttat<font color="green"><u>AGAAATATGAGGAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGTCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAATATGAGGAGTT</u></font>gttattgtcaactaagtgcaacagttctagaaagctagcatttctgagttaaaaggttttataacttgttatagacttaat<br>tttcagtggggagattaaaatgtgacagatggaagaattgcttggacaaaatcatgtagctcattttttggcagattcaggattcctagttgatttttca<br>ttattagtttgcctttccagtggtttctcagccccactgtgctgccttttcagatcctgtggaaaagcacataaaggataagaggttaccttctaatgac<br>aatacaaattgaagactgtccgtttagcgtttataatatgtgcagcctattacaaattctataaaataatgatgcaagtttcacaaagagataaactttt<br>aaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:DSE:NM:013352:3/6
0	chr6	119417520	119417831	1000671	0	+	Yb8NBC441;3192;pAlu6-119352555; RIP_Alu_chr6_119_02	TAACGTGGTACTGCTTTGAAAGGAG	TTTATCCAGAGTGCTATCACTCCC	SINE	Alu	Yb8	gtgggttcctctttcacagtgggttcttttctgactttggactttggcaagattcttctttgtatttgagcctatctcattccacctctcctcaaagcaa<br>ctcatgtcatttgaaaagaattctttaggccatcgattaaaaaaatcacccctttgaggtggtgacattgggtaccaggggaaaaagggtacctactgtg<br>tattctgataagtggcttgaaaacagcctcctcctcagcttgctgtctttattgcctcatctctcatgacacttgttttcttcactgctcctggcatgtc<br>ttcaggttattgacttctgggatttgcagattttgtaacgtggtactgctttgaaaggagtactttacactgctttggaagaac<font color="green"><u>AGAAAGAAAGAAAAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAAGAAAGAAAAGG</u></font>ttaatgctaaggactgttattagtattggtattggtctaggctgagattcagtatgggagtgatagcactct<br>ggataaatgcttgaacacacttttgtctctcctacctcctgacaccaattacttccccacccccactcctcccgacttgcttctctcaggtccaggcctg<br>tccttgacgtcagaaggcatgggctggtctccaggaagcccgtccaagctcagaacttagagacaaagcaaagcattctgcacagtcctgcttgacattt<br>cctctcttttctcatttgaagattttattgtgttaccctggtgatgagaaatgtagttaagaaagaggaattcccagagtagaaagtatgggggccagaa<br>gaggcaataaga	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	472	161	NA	intron:FAM184A:NM:001100411:1/17
0	chr6	120894461	120894462	1000672	0	+	14455; RIP_Alu_chr6_120_01	NA	NA	SINE	Alu	Ya5a2	cactagggagcccagttccataaatgcaacctctgtcattaaccctaatatataagaacagctcacactggacatctttgcaatgaccatgccctcacca<br>tcaaagtcttcttataactttagtgaaggtagtatccgctgagccttattagagaaaaaagacaactgagagaggagattgaggttattgggtctttcat<br>aactgattcttctagattactcacctctcttatgccacctttatatcctctccacaacactctgatagggcatttctggcacaactccttcacttaatat<br>aagccatcagtttttccaagctttgaaaagtctaatagcatattatgactagatcaataatttcaatcatagagttggtggttat<font color="green"><u>AAAAAGGGCTAAATT<br></u></font><font color="red">AAATTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAG<br>CCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGGCTAAATT</u></font>acagcctcagc<br>aagtcttccatgcaaaagtcacagggaataagtaggactctgagacttgaaatagaatgaatctggatagattcactgaagaacattgagccctcttgat<br>gggctagaataactggctgtaggatagcatcattcctattttgagaatcatgcaaaagactcaactgtggcagatgccttgcaagctgataattcccttt<br>ctcaagagctggcatctgctcctcctggctattaatctaataactaggtaaagttttgcaaaagtgagttggaaatgataggtcttgctaaaggaataaa<br>ggaattattgtttgaaagagctatatgtcctgatatgtgatagaaagaataagataatgtctgagaatggctct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	123763424	123763721	1000673	0	+	4970;Yi6AH125; RIP_Alu_chr6_123_01	GCTGAATTCTGTCCATGACT	TCTACTCTGTTCCAGGCATT	SINE	Alu	Yi6	ttttattctaacactgtggccagaactgatgtattcctggttccagttaagtaaataagaacttgtttctttaataacaatgcattccaacatacctcat<br>cactgtcaccttgttttcttagagtggcagagattggcctggaacccagctcacaatatgaccatggaaaattttacataagctgaagataagttcaatt<br>acacgagtgattattagagttgtcccattgttatctacagaggggtgtggagcacgagagaaagcacaggtgctggcactgatgaccttgggctgaattc<br>tgtccatgactcttcctagttgtgtgaccttgggcaatgtgctatggcacaccgaatttcattttcctcatttgaaaagtggagctaataaaa<font color="green"><u>TCTACCT<br></u></font><font color="red">CACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGGGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCTGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAG</font><font color="green"><u>TC<br>TACCT</u></font>tgcttacttgtgagaaatggagataactgggctaaaatgcctggaacagagtagatgtagaaaaataatgataataatgacaagctattactata<br>ttttacaaataataaaaatctgaccacatataatctttttaggtaattttttaggtgtgacatttactgatctctttgagtaaatgcaactttattctta<br>tttttctatatccagggagggtatgtctagaatattttgtattaagaaactaaagggaaaaaaatacccataagcaagacagaaacatgttatgaagggt<br>actgtactgcaatgaagtggattcaagtctcaattttgctataattagtagtcattaccttatgcaactatagatgaatgttgtatcttctgtcttca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	469	164	NA	intron:TRDN:NM:006073:10/41
0	chr6	128989832	128990150	1000674	0	+	Yb8NBC278;14379; RIP_Alu_chr6_129_02	CATTTCACAGTAGGGAAAGTTGG	TGTGGTCTGGAGGAAAGTAGG	SINE	Alu	Yb8	acactgggatattatgactattttggtagcttaaagaaaaataaattcataatactagatattaattatattcgatgatatacataatttataatactag<br>gatagaaaaaatctttattaattttcaagtagttacatcattctctcctcacttcttagcatgaaggccatttatgtactggcaggtaaatgtcaggttg<br>agaaggctctaagtcatttcacagtagggaaagttggtttttcaacttggaagcaaattttattttattatttttagaaaattatatatatatataactt<br>aaaatggaaaattgcacaaatcataagtggacagctccgtacattctcaccaagagaacatatcaatgtaatgaacacccaaatt<font color="green"><u>AAGAAACACTACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCATGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACACTACATG</u></font>attagctccccaatatcctccattcggctactgtctagccaattccctaccaagggcaactgctac<br>actgacttctaacactgtaaagtagtcactggcagagattttgaaaggcagtatgtcctgctgaaatgtgagggaaattccactgatgattttaaaccta<br>aaacgatatgaatatctttagcaacaaaacctactttcctccagaccacataagaacccgcccatgcctatgtcctatttcctctggagcatttttaggt<br>taagttttagatcttgtagtctggtgatatagtacattttgacataacatggagtaaggatgccatgaggatgcccagctcatgtagggggtgcttggct<br>ggtctgtgatagtcactgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	736	402	NA	intergenic
0	chr6	132697643	132697951	1000675	0	-	16327; RIP_Alu_chr6_132_01	NA	NA	SINE	Alu	Ya5	tcacaattgcaacccagttctcaaaataagaattttgacaaacctcaactttggcagaagaaaagtaacattttatgtgaaaaactgacatagctaattt<br>ctggagacagaaaaaaataaacaaaaataagcgtacccatcctatcccagcagtggccactacactgtagaagagtgaaaaaggatccagactctggggc<br>cagagtgccaaggtttgaatcctgcctttcggtttactagctgtaaatcctgggcaagtcgcttagcctctttgttctttgatgtcttcatctgtaaaat<br>ggaaaaatagttttatctgatagatgtgatttgaagattagtttagttaatacatgtaacaggtgtaaacagggcctggtgcatat<font color="green"><u>AAGAAGCTGTAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAGCTGTAGTT</u></font>attgttaccattgtcaagaaaggtgagttagactctgcattgccaacaatttggggttttaacatactaaagaaaat<br>ctagatgtggtaccctggatgggaaacatatgcacacttataattaccatacaaagatgcttggaataaaaatgccaaatgccatctatttgagtatgac<br>ttttatagacaatgggaggttttatcttatatattacattttctcagtcaaacatagctataaattcttcaaatacaattttactgttagcaaaagtaat<br>tataattatgtttcagcatgtatattctaaatcaactgtacaacttctcaaaaataaaatatcatcaggtactgaaaaaccagaaaggcagtaattaagg<br>caaattttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MOXD1:NM:015529:1/12	
0	chr6	133371502	133371831	1000676	0	-	Yb8AC1362;16488; RIP_Alu_chr6_133_01	AGGCAAGACAGTGGAAGGTC	GCTCCATTGCCAATTTTTCT	SINE	Alu	Yb8	aacagaaggagccattcagttacattgaacaagtttttccagcatttacctctacccttagcactatgttacacttctgtggatattaaggaaaaaaaaa<br>gatataaaagacagatttgtaatcataagtaggaaaacaaggcttacattcataaactaataagaaaagagaaaacaattcaatcaagtgccaaaatttg<br>tgtatagacactaagtactgtagaggtcaaattttgcaatcttattatttactaggcaagacagtggaaggtctatgttcaagaaatatgatgggtgaga<br>aaatggtaatcatagcccatctaattaacatttgttccaggtaagacatctgaatcaatcattggaaattaaatgcttgattgttt<font color="green"><u>AAAGAAAAATTGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAATTGGC</u></font>aatggagcaaaccttaccacaagattatttgccaaacagaacttagcattctttct<br>tttaacctctaatggaataggttgtgaagtgtcttttgctttttcccatgatctagctcaactttgagaaagattttgagatcgcaggtcagcttcttgt<br>tgaacccgactgagtacttaagcaattgttgaggttgagaattagatatcagatggtaaattaagactgggattttattgaaccacagcttccatgtatg<br>aggctatttctctcaccctttgagcaggggccaggccttgtcaagccatgagactctcttggaataagtgacaacaaaggtgcaagttagcagagaccag<br>ggacatataactggccatctgtagtccatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	499	171	NA	intergenic
0	chr6	154446931	154447236	1000677	0	-	9719;pAlu6-154401955; RIP_Alu_chr6_154_01	CCTCTTGGACAGTGAAATCACAACC	ACTTACGCTCTTTCGCTTCAAATGC	SINE	Alu	Ya5	gacatttgaattttgcaaatattgggtagtgttgggacacttctgcccttcttgaaatgggggaatataattgttgttctccttcccagaatttctttgt<br>ctttgtcctcttggacagtgaaatcacaaccattaggtcacacaaatgtagtctcctctcccttctctctggtcttgttaattaaagcagttttgctgtg<br>cttaaattaatgaagctcactcatgttgttcagtgaatatggctatgttcaattttacccagactcttaggaaaagagttgtcttctttatttcctcttt<br>tttttttctcttctcctatatcttctgtggtttataccacttatctcatttccgtttggtattttgtaaccctgtgaatttatca<font color="green"><u>AAAAAATGTCTAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGATCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGTACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAATGTCTAGCC</u></font>ttagtgggcaatgcaaacttaaataaaacatttatgcatttgaagcgaaagagcgtaagtttaagagactttaaagcaa<br>atgggatgtgatagcctgttttcaacttttaggtcctttcaaaaatcaaattgcaaaggaagttgtaggtaatattggaaaccacctttctctggaaggt<br>tttttttgctaaacattcctattacagtgcatgtgacaatatgaagatgaattttccccactgtctcaaagggactctgtgctctctctctaaaacctaa<br>aacaaatacttatttttctttatgagtatacttatgctaagaatgtaatacttttagttggaacttaagcaagaaaactctgaatctaaacctgtgtaat<br>ggaaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	675	362	NA	intron:OPRM1:NM:001008503:3/4
0	chr6	170044824	170045153	1000678	0	+	238980; RIP_Alu_chr6_169_02	NA	NA	SINE	Alu	Ya5	cacacgagtcacactgtagaaaagcctagttcatacgagtcacactgtagaaaatcctagttcacaggagtcacactgtcgaaaatcctagttcacagga<br>gtcacactgtagaaaagcctagttcacaggagtcacactgtagaaaagcctagttcacaggagtcacactgtagaaaagcctagttcacaggagtcacac<br>tgtggaaaaccctagttcacaggagtcacactgtcgaaaagcctagttcacaggagtcacactgtggaaaaccctagttcacaggagtcacactgtcgaa<br>aagcctagttcacaggagtcacactgtggaaaagcctagttcatatgagtcacactgtagaaaatcctagttcatacgagtcacactgt<font color="green"><u>AGAAAATCCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA<br>AAAAAAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATCCTA</u></font>gttcacacgagtcacgctgtagaaaagcctagttcgcaggagtcccactgtaggaaatc<br>ctagttcataggactcacactgtagaaaagcctaattcgtaggagtcacactgtagaaaagcctagttcacaggagtcacactatagaaaagcctagttc<br>acaggagtcacactgtagaaaatcctagttcgtatgagtctcactgtagaaaagcctagttcaccgggtcatactgtagaaaatcctagttcatacgagt<br>cacactgtagaaattcctagttcacacgagttacgctgtagaaaagcctagttcgcaggagtcccactgtagaaaagcctagttcacaggagtcacacta<br>cagaaaagcctagttcacaggagtcacgct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:WDR27:NM:182552:16/25	
0	chr7	4807756	4808062	1000679	0	-	11879; RIP_Alu_chr7_004_01	NA	NA	SINE	Alu	Yc1	gcagctggcacagacttggatgtgacagacaggcacggcgaggttcatcagtcagagacgaatcctcctcaccactctccccgctcctctctctctcgtg<br>gccttctgatttgcccggagagccttctcacccacctccaggaaaagccagcccaacttcacacacccaggtagcacccctgctcatggtgcatggcagg<br>cctagccctgggccctccaccctgcccaccttcccggagggggttgaaatgttccatccagcagcagagctgagggctgcagcctctgcctgaggaggag<br>ctgggacggggccggaaaagcccagcagagacagggtcccatgcccgtgggctcacaagacaacccaagactgaaactattttccct<font color="green"><u>AAAGAAGTCAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAGTCAGTG</u></font>aaatgggtctgtttttaaaatttcagtccagagggaaatgtgtgtggttgtatccccaaaatcccattcttctaagcagc<br>tgtgacttcggggtttgggtgacagggaggacagaggaaaggacgcagcagctctaatgggacaatcctttccacagattcaactccgacagaattcaag<br>ccgcacggtgtgggtaagggcccccttctcgaggcacggaccccactcgccaccctgcgaggggccgcggtacccaccgagatcccctgcaaagcacaga<br>ttccaaaccctccctctggtcaccaaacgtagcagcttttcgtatcaaaacccaaccaaaaaaacagtaagtatgtgatgaaaaccgtgtcctgagcact<br>gaaaaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	exon:3UTR:FOXK1:NM_001037165	
0	chr7	7542328	7542611	1000680	0	-	7830;Yc1RG330; RIP_Alu_chr7_007_02	GCACAATTAGCATTACCGTTTTC	TCCTGGGTTTTAATCTTCATCTG	SINE	Alu	Yc1	tgtatatttattatgtataagtaaagttttaagtgctcatttaatactaataccaccttttgagacatgatctattcttatttccattgtacagattagt<br>ctactaaggcacaaagagtttaagcaatgggtccaagtctacagagctagtaagggacagactgagtattgaaacccacaagtctgctcttagctaccat<br>attatatttatccctttaggaaaaattgctgaatttcctgaatatttggcctgaaataaatgcatttctttttgacagtgtggaagttctatctgtcttc<br>ccttctggtggactctggctagggacaacagtttgttgaaaggtgcatttctcctgggttttaatcttcatctgaaagtgcagg<font color="green"><u>AAAAAGGAAGGGAATA<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGA<br>GCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGAAGGGAATA<br></u></font>tcttgggagaaagaaaacggtaatgctaattgtgcattttcaaatactatatttcatataagaccttaaaatagaaacctttaaacttgcaacatttgca<br>aagattccacgagaggttctagatagggcctgcctatgtctatgaatttacaaatggtctttctcttgaattacgctcactttctgttgctttagggatt<br>ggcttttcttcattaaagggttttcagaaaaggtggccaaagaacaaaaggaaaaaaatgcatgtgttaagtcaggaaaaaatgtgctcctggcccattt<br>tcacaaattatttctgtcaataatactttccacatgtaaagtagctcctagtctgccctgaatgactttgttgccttagcaaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	384	84	NA	intron:COL28A1:NM:001037763:11/35
0	chr7	12058716	12059026	1000681	0	-	pAlu7-11768949;20744; RIP_Alu_chr7_011_02	NA	NA	SINE	Alu	Ya5	taaactgcaggaattgagtatgtcagattttggtatacgtggagatcctacaaccaatccctacatacaccaagggatgactatagttacgtgtggataa<br>actccccttaataaaatgtcttatgttactaaattttgaagaattatgaagatagctatttttatatattccttttgtcatctaaatactccaaaattat<br>ttttagtttaaggcatccatttgctaaaggctaaaataagaattttgttcattgatttcctttaactaaaaaataaaaaataaactttgtttcttttctt<br>taggcaatgttttatttaaattataagagaaatgtgattaagtggttttattatttaataattgtaaaatggagttcaaatgtattt<font color="green"><u>AAAGTAGTATAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGTAGTATAGA</u></font>atcattattctatagacaatctcagtaatgagaaaccgtaaatattcttccttgaaaatatacaggcatgcctcag<br>accactgcataaagcaaatattgcaataaagtgagtcacacaaatttattggtttcccatatttacactacactatagtttattaagtatgttgtagcac<br>tatgtcctaaaaatgtacataccttaatttaaaaatattgctaaaaatgctaatattcatttgcacctccagtaaatagtaatcttttttgctggtggag<br>agtcttgacttaaggttgatagctgctgacgagggtggtggttgctgaaggttggcgcagctgtagcaatttcttaaaataagacaacaaagtttgctgc<br>atcagtggatt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	37836651	37836652	1000682	0	+	9775;pAlu7-37543417;1104685574181; RIP_Alu_chr7_037_01	NA;NA	NA;NA	SINE	Alu	Ye5	aaagctctttgacctgacatgtggacccatcaagagtatagaccccaaatcaagagtttcttcttccttctagtaatagttgtctgttttgtaccccacc<br>atgcattctgggtacactttattcaaaataattcagagagaaaagcttctaacttagttctttataatgaaatttatgttgctttaacgactgtctgttg<br>cctggatatgctgtgtttcttaagtggggttatacattaagcattcctatgtctcttccttcacagtattttcccacctttgtgataaaatgctttaact<br>gaatgagtgttactgtgatttcaaaatttttcatcttaatcatcatcagaattgttttttttcccaaaaaggtaatgaggattgatt<font color="green"><u>AGAGAGGGGAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAG<br>AGGGGAGCA</u></font>ccagttctatatttaccatacaatatgttcaatctcttagctctatataagctgactgcatcattttttccagacttaactaccttcatgc<br>agtacttaacttgagctaagcacaacaattggtttccctgtactctccagggaaatttgctcacagatttcacagaacaagataaatgtcagtgtactca<br>aattacattgtgagcaaaagttgtgacatttgctctctctttgagttctgaccctagaacattctttccctccatctccacctatcaattttttaagatc<br>cagagaacctggaaataggaacagtataaactgggctctagagaatacttaagttgacatagctgcttcttgaaaactactgattgtcagtaaagc	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr7	49552076	49552383	1000683	0	-	52662; RIP_Alu_chr7_049_01	NA	NA	SINE	Alu	Ya5	ccttaggaagtgtaggaaagaaaacacaaaattttgaggaagcaattgatgaaacatatgtgtcttgatcatttcttccttcactaaagtctgcttgggt<br>gttagagaccactgcacaagttacctctgaaccaaatcatggagggcaaatttttcagcaagagcggaggaatgggctttgatagcagaacctaagattc<br>atcatgatgtttatatctaaacttcctacaggccccaagccgtcatacggatggcggttgatcatctgccgaaagagccctatatccatgtacctatggt<br>agacaggattctatgataggacccctagcgagtcatgcctctgcatagtaccctgcccatgagtgtggatggagcctgaaatttgctttt<font color="green"><u>AGACAGTAGA<br></u></font><font color="red">GGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAA<br>ACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGACAGTAGA</u></font>aggtggtaaaggtgatgagatagttactctcatgattatgttacattactaagactccatcttagcagattatagtgagggg<br>ttctcctgctggccttgaagaaataaggctccctgttttcagagtgcttataagaactaatgttgcaaggacctgagggcatcctatgaaagctgaaagt<br>agtccttagacaacagcaataaatggaggcttcagtcctactgtcacagggaactgaattttgtcaacaccatgtaagcttggaaggaaatccagagcta<br>cagaaggagcacagcctgaaccaccctttgaattcttgtgagatcctgagcttagaactcagttaagctgtgctcataattgtgacccacagaaactaca<br>tatgttgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	51691910	51692218	1000684	0	+	13499; RIP_Alu_chr7_051_01	NA	NA	SINE	Alu	Yb9	gttttctttaaaaaaaattcactgaaaagatactgaagagctccccaaactgagtagagttgaatgactcggccacacgaaggaaagacccttggcagcc<br>tggccaagcaatcacaaacaacctccactgaccttctgtgcctctccttccctggcttccaccagcatctactgggcaccaaccacatgccaggcataac<br>cgtgggatccaggctgccgatagggaactgtaaaatgccccgtcttcagagaggacaaatgccaggagatgggaagagctaagatggaggatgatcaggt<br>gagagtggagaggttacagcctcagcatgtggtctcctggaatggccaggaaggcttctctgatgaagtttaaactgagacctgat<font color="green"><u>AAGAGTGAGGAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGTGAGGAGCT</u></font>acaggagcagctgggaaaggagtgtccaggcctccagcaggactgaggttggcttgtatgtgtataagtatatacat<br>aagtgtgtgtgtgtataagtaaatatagatatatatttaaattccatatgtgtgtatatgtatgtgtgtaaacatacatatatatttaatataatatata<br>atataaatatatatatatatttagagagagagaagagaggactgtacatacccagtttttccttgatatctctggggaattggttccagggccctcaagg<br>gtaccaaacactggtgctcacatcccatattgctaatagagtagtatttacatataacctacattgtttaggaaatgatggcaataaaaaacatgtatgt<br>atttagtac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	52094974	52095275	1000685	0	+	Yc1NBC51;6760; RIP_Alu_chr7_051_02	TCATACAAAAGACAGGCTTTGC	CAAGGGAACAGATTCAGAAGAAACA	SINE	Alu	Yc1	tcatcatcacattgcataagagataaatttatgtggttcccacttatcaatttcagtattcttaatgaattagtagacaaggtcgtctgctgatgaatga<br>aagccaagtgttgggtacaaggagaataatgaagttttgaaatggctgtaaaaaccaaaataaattctagcaggaatgggtaaatgaactgcagcataac<br>aatgaggtcacaacattcaattaagaacatattcaacattcaattaacattcaattaagagcatatagtgatacaaaccatatctttcaggttgatttga<br>ttctatacttttcatacaaaagacaggctttgcttttcttctgtatcagaaactcattctacaatatttgacaaattgtcttgaagact<font color="green"><u>AAAAAATGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAATTACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAATGACA</u></font>gaaaatttacttcaatatgtaaaaaaatggttaagtagttcttattttaaaaatccatatattgaggcaaaatacttgttttgttat<br>ttctgtctgtttcttctgaatctgttcccttgaactttatcactgaagatttttctatcagcctttttcaataaacagatcctgttgactcatgaacctg<br>tctcatcacctccgtggggcgggtagagccagctaaagttcagatatatgctttgtccatggaggaacaaatatattttgtctgtgcagtggctctttct<br>cttctgaaaagtatctaaactcagagtttattgccctaagtatccaaacatgcttattattcagtttctcatcttgttcaatttgtttaatggatagaac<br>at	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	521	208	NA	intergenic
0	chr7	79742091	79742408	1000686	0	-	21331; RIP_Alu_chr7_079_01	NA	NA	SINE	Alu	Yb8	agcattattgttaatgtggcatggccaattgatacgatagatttcttagctgcaacattgtgtttaccataatcctgactccaccaaaatttgtattcat<br>aatttcactgtaaaaatgaacctttaaaaactgtgtcttaatgtatctaaatgtaccttaaatgttgaacttttaaactgattttacattgatgtaatgt<br>tgtaaatgacagatgctcaccttctctaaaattttttattgatttgattttgattccatgaattgggtgggaaaatattctgaagcattattggattcaa<br>ctaacaaaatttcttatttgaagcatataattacacttatataaaactggcattggagctattttcttcacttttcatatgtgcat<font color="green"><u>AAAAATTGGGATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTGGGATTG</u></font>aaaataaattatttagaagaacactcatttgttttaaatgaaaactcatgcttttcaaaatggaatgt<br>agcagctgcaggtattaaattgttgtctttggaaacattcttaaaataatgattgactttttttttttttttttttttgggaccgagtctcgctctgtta<br>cccaggctggagtgcagtggcacaatctcggctcactgcaagctctgcctccagggatcatgccattctcctgcctcagcctcccgagtagctgggacta<br>caggcgccctccaccaggctcggctaattatcttgtatttttagtagagacagggtttcaccgtgtgagccaggatgatctcgatctcctgacctcgtga<br>tccgcccgcttcagcctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	86836630	86836923	1000687	0	+	7627; RIP_Alu_chr7_086_02	NA	NA	SINE	Alu	Yi6	atcttaccacttagggcctggcctatcaataggaacataatgtgcctcactgctgcagggcaggcatgcaatggcaccacagaagctgtggcctgatcct<br>gcagaccaacaggtcacggtctgccagccacaaaggtgcaacaccctaacagatacctcccaggctaggctctgttgttcccaaagaaatatcaatggta<br>aacaatggggatctctgaggtccacgttttcctgagtagaagcccagttactttctgctagggcaggaccaaggactgatttataaggcatcacagctct<br>gaactccagctgacaaatcaatccttcggcaatgctccccaacactcccagagaggggcaaggcaaaacagagaaaagtctttgc<font color="green"><u>AGAAAAGCAAAAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AGAAAA<br>GCAAAAGCC</u></font>tggatggacaatgccatgaagacattccctactacattcttgagggagaaggcagggtagagggtggaggaagattgagaactccattttt<br>ggtgttacttctaaactttctatgtgattctacaaaagtctttctcctcagacagcatcgcagggagtcctatagacccacatcccttaccaggtgctca<br>atccgatttccaggttagacctcacaccttcaagtgtcctcctctgtcagacatcctacccctgggaagctgttccacatgagcaaactgcatcctaaca<br>gagctcatgcccctgtgtactcagccagagctcatgagacttatttaccaccacgagaacagtatgggggaaaccaaccccatgattcaatcat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:C7orf23:NM:024315:1/4	
0	chr7	89598885	89599188	1000688	0	-	pAlu7-89197006;8375; RIP_Alu_chr7_089_01	NA	NA	SINE	Alu	Ya4	ccaatttgcgtaatttttgcttgaggtgtctcttagtctgggtgcaggcatagagaaaataagagtttgtgaattgatcctgtactggcatttagttaag<br>aaaaactgatggaagaaaaacaaaagatgttttacagacactggcaagagagtggttgatatgggggaccacggagtctagggaaaatagaacaggaagt<br>gaaggctgaagattagagaggctccctttgaaaggattaaggactagtggtctcagaaaggtaaaagaataaatgctgtggacatagctatatgagagat<br>tctggaggaaagagtttgtgtgtggagaaatgaatgttttgattcaggaagtctatggtgggtcagtattgagtgagtgaaccagatt<font color="green"><u>AAGAATAAGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATAAGGTC</u></font>caggatgtggctgttggagttaagatgaagtttatgtcactggaactgaagatgttaagaaatgaagttactaaagtgattgac<br>taagaaatcctttccttgttagatccaccgagaatgatggcaatgcttgagacatagaggaagactgagatcttaagtctcaaatttttattgtataaga<br>gaaagttgccaggcagttaaaggatgcacagaattggagagaaaaatgatggtataatacaaagtgaaacaagtgacagcctggggtcaaaaactggatc<br>accagtgtcttttatttggcccgcactgtgttttaaaagttagattaaatgaccataatgaaaatatgtgagtttgcacacacacacacacacacacaca<br>caca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	90583946	90584239	1000689	0	-	15088; RIP_Alu_chr7_090_01	NA	NA	SINE	Alu	Ya5	agaaacttaaagaatccttaaattgtgaaacttctcagttttcttaattgttctaatgcgtattgtgaatctgcaagaggagagtataatactttcccca<br>aagaattgtcctaaaatttcttgtggtttcagtgttctgtcaaatactcactaggaaatgcttattgcagaagctcttttgaaaaaacatctaaataaat<br>aactataaaggaatagtcaaatctggtacatacattgatgagattatatatgataaattaaaatgtcctctaagaatttttttaaactgggaagatgtta<br>agtgaaaaggtatacgcaatttgacctcataaccataaatactcatgcacagaaaaaatatttgtaggtctgtttttttttccctct<font color="green"><u>AAAAAAAAAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAACCGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAAA<br>AAAAAAG</u></font>aaaaaagtttggcagaaaatacatttaaatgtcttcagtggttacctctggaatatgggattatctttattttttagtaagtttttctgagtg<br>ttttcccaagatttgtggaatgaatgtgcaattattttaaaaatcacaaaatctatagatgtcattttttaaaagaaaaaaacctgtgtgacagctttct<br>atctagctgtattcattagtgacaagtataaagtattatttactgttatgtttatagcacttaaaacatttttacagtgaacctaccataacatattcat<br>tttaatgttctatttaaaaatttttatgtagtaaggaaatggctttttcttatttattaaatgtagcattccattttcagtattatatgtaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CDK14:NM:012395:7/14	
0	chr7	95386269	95386584	1000690	0	-	79717; RIP_Alu_chr7_095_01	CAAGTTAAACTTCCCCTCGCACC	CATCTCTCTCTCCCCCTCCACTC	SINE	Alu	Ya4	ttttactaaaattttcttaccatatggactaaaagtcatagaagattaaatatcacaggctgtttaaaactgatgtcttttatcactttgatcttcttaa<br>tattcatcattttcaagttaaacttcccctcgcacctataaaaggctcatgttgatggagataaattgctgaactgttcaaatattttcttaacattcta<br>acttgtcaaatataaataaggtcatagagaatcatgttaaatcgggtgaattatcatcaagagtctaaaagtctttttttctttacagtaaaagaactat<br>aaataaaaatacatttgtgtattttgagaaaaatcatttctgaaacatttcaggtcaacaaattagtagaatccaagtttcgttc<font color="green"><u>AACAAATCCAATGAG<br></u></font><font color="red">CAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>AAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACA<br>AAAAAAAACAAAAAAA</font><font color="green"><u>AACAAATCCAATGAG</u></font>tatattttatattttatttctatgatagagtggagggggagagagagatggagagagagagagagagag<br>agagagagagaaagtgtcctgggaagaagttccaaataaacagaaaacaaacagaaaagggacaggtagtcaggaaactctaaaattagcataaatactg<br>atgaagcacctactatatgccagacaacagagatacagctttctagtactgctaagctcttcctggtgtattagagaccattatcgttatttcatggctg<br>atacagaggaaagctgaggctcagagaggttaagtgacttgctcaaaattgcacagattgtaataagtaaagccagaacctaactcagatgtttgataaa<br>agagctcaaatgcttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr7	96522757	96523071	1000691	0	-	pAlu7-96120589;238362; RIP_Alu_chr7_096_02	NA	NA	SINE	Alu	Ya5	gatgcttatatgattatatttgtaaaaagttgcattttctgccctaaataagcttgacaattatatgtcacaatgtctgctttgtactctttttactctg<br>ggtgatttagtgggagacctagaggcaggatggggtagtggagagctcaaggggtttagaggttgagtcagagcttagctccaaccccagctgtatggtc<br>tggggtcatttattttcattatttatgtattccttcacatctagggagcaatgggctctgaatatgtactggaattagagattgacaccctacccataca<br>gagcttttaggcggagagtcccctatctgagttctgtgggtaggataagggggtggaggagatcagggaatgctccccagaaggtgt<font color="green"><u>AAAGACTAGCGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAGACTAGCGCC</u></font>agaggctcatgtaggagttagccagtggaagggcgggggtgttgtggaaagagtgcagtagacagagataat<br>gccatatgtgaagacccagaggcgctggatctgcaaagactcattccagtggtctttcagcctcatatatatttgttttgagacaaagaaagatgtaggg<br>ttttgtctagaactagaatctttaaagacaaacttcagagatgagattaccaatggtatctgttatagttatcagtgggtctcattcaaattttctcttt<br>ttagcccaaagggttcctggtaatgtacaaggtggaaacctaaggctttatttcgagtaagaaggaggaacttcttaggttacatcagcactcttgaagc<br>tactgaggttgcaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	102488721	102489043	1000692	0	+	8120; RIP_Alu_chr7_102_01	NA	NA	SINE	Alu	Y	attggttttagcctagaaatgtataatcacatagcatctctctatacacaatttgggtgtaataaatacatatacacattgacatatgtatatgatctaa<br>tatataccaaggtgtatacatatatttaatttacctacatatactagacatagatgtacctttacatatatttgcatgtaaacacacatatatgcacact<br>ttcactgcatacacacctgccagtccttctggtgcatcctaatgaaacctgattttctcctgctaatgacattagcacctggctgctaatgacatttctt<br>aatcaactacctcaacctgctaacactgaaataattagaaatttttgtctagctgcaagattttcatttagagataatctgcat<font color="green"><u>AAAAAATACACATTCG<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATACACATTCG</u></font>tgtgtacggatattatataaatgtatttatattatgcttcattctaggaaagaggaatcag<br>aaatgcaaaccagattaagagtataaaaagcaaccagaggccaggcacggcgcctcacacccataattccagcagtttgggaggccaaggcaggtgcatc<br>acctgaggtgaggtcaggagttcgagaccagtctggccaacatggtgaagtcgcatttctactaaaaatacaaaaaattagccaggcatgatggtgcatg<br>cctgtaatcccagctactcgggaggctgaggcaggggaatcacttgaacccaggatgcggaggttgcagtgagtcgagatcgtgccattgcactccagct<br>tgggcaacaagagcgaaactcca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FBXL13:NM:145032:17/20	
0	chr7	103463080	103463388	1000693	0	+	17827;pAlu7-103009708;Yb8AC1392; RIP_Alu_chr7_103_02	TCAAGCATTTTTCCACTCATGT	ACCTGTTTTTCAGGTGGCAG	SINE	Alu	Yb8	taaccttctaaattttttattagtctaaatagcattcaaaaaccataaatatctaatttaacaatagaaatattgttaaactctagcaagtttaaacctt<br>cataatatttagaagaggaatgtatgcaatgtcatttgaattagcaaagaaaaactaactgcaaatcaaaaattcaaattattgataaaattttgttaaa<br>ttaccaaattggtatttccagagcacctaagatactgtaatataaagctagctgtcaccagcacatgcctaaaggtagaaatggcagagtataaactcta<br>attctataacataatcttctggcatattcaagcatttttccactcatgtaagcatgtattcattcatctattcaacaaccaatgttt<font color="green"><u>AAAGAATTACTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGAATTACTTT</u></font>gcctaaatattttcataatactacctgcaattgaaatactagaaatacgtactcagtattctgccacctgaaaaacag<br>gtttcaattttgtatgtttccttcagctttgtctacacgcaagttattttgttcttaggtaattgcccttttatccctaataattttttacttattttgt<br>ctgatattaatatagtaacagtagcttacctttggttagcacttgcctggtatgttttttccatctctgtactttcaatgtttttgtgccattatgttta<br>gttttatctcttagaaacagcatactgctgtatttttgtaattgcattctcaaagtcacagtgtttcgcctggtgaatttaatctgtttatatttattgt<br>aattgacaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	154	NA	intron:RELN:NM:173054:3/64
0	chr7	104129529	104129796	1000694	0	-	15419; RIP_Alu_chr7_103_03	NA	NA	SINE	Alu	Ya5a2	atcatccatgtacggttttcactgggccagttccctgtcctcacacttttcagtacctagagtggagtaacctttggttcattcccaccttcagactctg<br>gtttgatctcactcctggcaagggggatctgaaagggctgcaggtcagttctttggaccttgtgttccctttctggtagccagtacattaatttattaaa<br>taaatatttatggagacacactagatgatggggatgcaaaggaaagagggtattagagggtaggagctgaaatggaaagcataagtaagacttcattagg<br>ctctgtgctgagtaatgtacatcatctgcaagataatttgcaagacccagtgcaaaatgaaaatgcagagtcccttgttcaaaactt<font color="green"><u>AAGATTTCAGCAC<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTCAGCAC</u></font>agtgagagtagagcagcaa<br>gatttcaaggcagtgagaataaagcagtaaaccaagtgggggtcccttctgagcatgggacactgagtgactacacgggtcacatgcccatgaagccagc<br>cctggtcatgcaaccccggttctctttgcctgaaatcctagacttccaagaactcaaaacctgctttctcttgccactttctactcattctcagtggcaa<br>aatctgaatccttcttagtgccaacagactttgcctgctttgaactttgctgtgtgctctggattctcaacatgctgcgtccttgtggctgtgattcctt<br>gaccctgcattcacacctcaactacgcttgcagtctgttgctatccgtctagatgctctacactgtct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LHFPL3:NM:199000:1/3	
0	chr7	105466062	105466063	1000695	0	+	238047; RIP_Alu_chr7_105_01	NA	NA	SINE	Alu	Y	aaaaatttacctttcatgtaggatgcccctggaagattagtcctagcaaaagagggagtaaattgagcaggacgaagacaggcttccagtcagtggactt<br>cccaagacaatgaagagggaagctgttgtcacagaccagcagcacagtaggctgaggggctaatgggctccagaaaatacaggggaattgatgggtttat<br>tcagtatgtctgaccagctgggccaaaaatagtgacaggatatacccaatctagtggccaaaattaaggataaacatataggtaagaatgcaagtaaaaa<br>ccatgaggcaataattttaggacaagcaaaaacctacatacgagaggaagtggaattgccaatattgcctaatattggtagacaaagac<font color="green"><u>AAAAACATGCT<br></u></font><font color="red">AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACA<br>TGCT</u></font>agacacaaggaaataaatactccttggctctgtaagtgaacagtatagatgcctctcactatccaaacacttagccttcatcttttagaagggaac<br>agatttggatacttttctggaatctgttcctcatcatttgaaattccactactcacatctgaaacccagaaaccaaataaatttggatgtacagtgtctc<br>tcattttctgagcttgttatctgacttagaaactggatagattcagatacttgatatttacaagcttgatgtaaccacataccttcactgagaatggaga<br>agccatagggaagggatggaggaaggaaagggggtggagatgtgtgacagccaaaccctccggtatgtgatggaaggttccgagatcctaaat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ATXN7L1:NM:020725:2/12	
0	chr7	107683994	107684126	1000696	0	-	33005; RIP_Alu_chr7_107_03	NA	NA	SINE	Alu	Y	ataatgagaagagataataatcaccttgtaaaagattccttgcaaatgaatctatggtttatctagacttttatttagtttttagtgacagttttatttg<br>gtccagctaagtaattaaacatcaaagaacatgactttgttgagtatattgtcgagtattcttcattgtgtttttctcattccagatcgaaagtataagt<br>gaacaggcagaagtctccaaaaacaatgccttacagctgagggaaaaactgggaaatataagaaaccaaagtgactctgaagaagaaaacatcaatcttt<br>tcatcaaaaaagtgaaaaactttttgttaggtaatttaaaaatatatattaggactagtttttgtttttttccctttttaatgtatagtc<font color="green"><u>AAACATCATA<br></u></font><font color="red">CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACATCATA</u></font>gccagttccaaattatattaattggaaatgacaagcctaaatcagaaaaatgatata<br>ccctttggtttttaattccttaatgagaataatctcaaaataccaactctgtgccaaaaaattacagctttctgtaaaagataaatgtggtaacaaatgc<br>tagaatttagttaaaattccaaacacatgaactttgtgtttaaagttattttatgttttttttaaggaaagttcaacatgacaattctatcagattccct<br>aacatcaggattcagtaattttctttgctgacagaaatgatatgagatcaagatatgctgaattttaattagatatcaaatatcatagggagttggcatc<br>taaaaaaaattattagctattattgactatttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LAMB4:NM:007356:29/34	
0	chr7	116842018	116842315	1000697	0	-	pAlu7-116382616;912; RIP_Alu_chr7_116_01	NA	NA	SINE	Alu	Ya5	cagatggaaattagcaaagtcttaaaaagctcctgttagagtccaggtgatggggacaaaattgcggggtggaggaggagcttctccaggacttggcacc<br>tgactaaatgtgagagtgagggaaagaaccgaaggtgacaaatttttggcataagaaactagaataatgtgagctccttagctagggtaaagacaccaaa<br>ggaggaagaggcttagcaggggaaggtaacaaaaacagcttaaagaacctgcagaacatccctggagaaatggcctgaaggcagctgggtcttcaggtct<br>ggagcttaggagagaatctggagacacaaatgtgggtgttctgggccagagatggaagctgcgcagtaggagcacccgagatctctc<font color="green"><u>AAGATAGCTTCGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GATAGCTTCGA</u></font>gcaaggagggagagggcagtgaatagagctccctggaaaacatgaacgcgtggcagcgcaggaaaggagtaggaggagagtgctgacat<br>acaggagtggcacagagagaaggtgtcatggagtcgagatggcctcaagacataagaagcaggctggctgggggcagtggctcacacctgtaatcccagc<br>actttgggaggccaaggcaggcaaatctcttcagcccaggagttcaagaccagcctgggcaacatggcaaaactaaggtggaggctgaggtgggaggatt<br>gcttgagcttgggaggtcgaggctgcagtgagccatgatagcaccactgcattccagcctgggtgacagagcaagaccctgtctcatggaaaaaaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ST7OT3:NR:002332:8/9	
0	chr7	124593026	124593027	1000698	0	+	8196;1104685584793; RIP_Alu_chr7_124_01	NA;NA	NA;NA	SINE	Alu	Yb8	gtggacagagttctttccttccctgtgcatccgcttcatttgcgctcagagtaacattgcgagggagagttcctagatcactgaagccagacataatcag<br>acagaaatttctggcacaatctaccagcaattttttttccccactatctcctgaggccagctctgatgtcagaacatacatccgcatccaggcaagcaga<br>aataataaaaaatatgagaagctagcaaaataaaatcaccaaaatgtgaggaaaatatggtttattaacagaagtcatcaatttgacaagaagttaatcc<br>cagtattttagaaaataaacagaagactcttagatgaatataattagtatcttcagagtgagccaaaatattacaaaaatattagaaata<font color="green"><u>AAAGGGACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTACGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGGGACTT</u></font>agaatgttaaacaagtataaactaatgctgtgtaaaaatttatgtcaataaaattaaaggctaaatgaaatagataattttcta<br>ggaaaatataaattacctgtattggctctagagtaatagaaaataggaattaatgagaatagacacagtggaaaagacagtaaaagacctactctttaaa<br>aaatggaaccatgcagacatgcagttttaagctggaggaagaacaaaatctgcctactcctaacaaagaaaatgagaaatagaaatgggaattttatctt<br>agatgatattagcagcaataatttcagactttataaaggataccaagtccattaaatattggaccaatttgatagagaagacagaaagagatcatcaccc<br>actaca	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr7	128309227	128309529	1000699	0	-	238996; RIP_Alu_chr7_127_02	NA	NA	SINE	Alu	Ya5	cccagttggatgtatgaaaattggcacttctggctgggtgtggtggcttacacctttaatcccagtactttgggaggccaaggagggaggatcacgaggt<br>cacgagtttgaaaccagtctggccgatatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcgcctgtattcccagct<br>actcaggaggctgtggcaaaagaaccatttgaacccgggaggcggaggttgcagtgagccaagattgtgccactgtactccagcctgggccacacagtga<br>atctctgtctaaaaaaaaaaaaagaaagaaagaaaaagaaaatcggcacttctttttccattccaggcatcagcgaggtaggtgt<font color="green"><u>AAGAGCTGGTGTTCA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAGCTGGTGTTCA</u></font>acagtgaccctattgtttttgtggtgggggcctttgcctagagcaaggtcagtgtggaatatacagagaaggatggtgtcta<br>gcagcaactacctcctttctgctgccctcatctgtgcaaaacttatcacagcctttgaagaaatggtggggggtgccacttgacagtaataggacattat<br>tctgaagccagaagctgtagacatcatgtcccttgaggctattctgagctgactgctgaagatgaccttcctgcactgagattgtaggatttggggaaac<br>caaggctgtatatttgctattgtttatcccatactgttcttgcaaacaaaacaaaacaaaataaaaatttactgggacaccattgccatggtaccaactt<br>gtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	137455285	137455578	1000700	0	-	11843; RIP_Alu_chr7_136_02	NA	NA	SINE	Alu	Ya5	tgtgatcctagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgaactgagattgcaccactgcactccagctta<br>agtgacagaggtgagatgccatctcaaaaaaaataaataaaaataaataaagaatgaatataattgcaaagataaaacgtaaacccagattgggaataag<br>aagcagaattataccaaaatggaagctgacgattacacagattcactccttatttactcattcaaagcttgcctcacataccataggtaaagtgggtaac<br>tctttctgatttttttggttcacttcaagactatatgatcttgaaattttaaataaataagctaaaaaggccctaaaatattttatt<font color="green"><u>AAAACCCACTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAACC<br>CACTGAG</u></font>tataatttattgatttttataaaactaattctttttttttctgttttacttataagttttgggatatgtgtgtagaatgcgtaggtttgttac<br>ataggtatacatgtgccatggtggtttgctgcacctatcaacccgtcatctaggttttaagcccctcatgcattaggtatttgtcctaatgctctccctc<br>ccctgcctcccacccccagacaggccctgatgtgtgttgttcccctccctgtgtccatgtgttctcattgtttcactcccgcttatgagagagaacatgc<br>agtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatttcatttttatggct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DGKI:NM:004717:1/34	
0	chr7	141113881	141114183	1000701	0	-	pAlu7-140444196;3181; RIP_Alu_chr7_140_02	NA	NA	SINE	Alu	Yb3a2	gaagcagatgctactactaaatatataaatacacatttataataacttagtgtatttgtgggtatgtgagtatagatagggagagagatgctcagagaag<br>atggagatagatataagctagacaatagctttctatataaacatttacatctttctatctagcaaattagtttgagaaggaaaagtcatttgcagatact<br>ctctagtgaagtattaatttccaaatgttatcggctgaccaactatatccttttatgtaagaagcatattgcagacattaaatactctattgtgaagact<br>gaaaacgacctaaactattccaacaattggtatatggttatagaaattatggtatactcacattatgagctattacacagccat<font color="green"><u>AAAAATGATGTTTTTG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAATGATGTTTTTG</u></font>gagaaattaagtaatgttggaaaaaactagacatgaaattgtatgttttatctgctcctggatacgtaattataatgatta<br>taaacactaatgataataataagcaagaaaaaaagaccaaaaggaaatataccaaaggttaatagtgggagaagagaattttcaatgattttttttattc<br>ctctttatcgttttctgtggtttctaaattccccacaataataagtatgtgttgctcttacatcaaagaggaaaatacttaaaacattatttaagaacaa<br>acacagaaacaaacaaatgtccttgagcttacataaggaatataaggataaaggaagttcaaacagctcttttcagcatcgtctgcgcagaagctgtcct<br>tcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	152419414	152419715	1000702	0	-	2533; RIP_Alu_chr7_151_01	NA	NA	SINE	Alu	Ya5	ctcaaactccccacctcaggtgatccacccgtcttggcctcccaaagtgctgggattacaggtgtgaaccatcgtgcccgaccttgcccgaccgaatacg<br>tatatcctctctatgtatccactccatgctgtagccttggttcataccctcattctcctaccttagcttttgcaaatgttcctcctgaataatctcccaa<br>attccattctgtcttccgggggaaactgaaatctgatcatgttcatcacgtgaggatcactccaaagctcacacctgtgatcctaggtgctttgagaggc<br>cgagatgcggggatcacttgaagccagaagttcaagaccagcctgggcaacaaagccagaccccatctctacaaacaaatgaaaat<font color="green"><u>AAAAGTAGTGATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTAAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGTAGTGATCC</u></font>agttctccgtgacctgcctacatctccagcctcacctcttcagcagcctgagtgcgccttgcaatctaccaccgcaaaacgttg<br>ctttacatctttgctcctcccttttgaaatcctctccttgctaacattaccccctcccttggcctatcccagattctccgcctctatagtctgaatgttt<br>gtggctccccaaaatgtatgtgttgaaacctaatctccagtgtgatggtatttggaggaggggcctttgggaggtgattagggcatgagagtggagtctc<br>atgaatgggattagtgcccttagaaagaggcctcagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccggggtgggcagatca<br>cc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	2037016	2037054	1000703	0	-	6898; RIP_Alu_chr8_002_01	NA	NA	SINE	Alu	Sc	tcgcatttcaatttaaagttattaccatattgcagctacttgcagtagtgattaaatgacagcaatctaaatggctgtcaatacggtcagacacatgatg<br>atatgttcatagattaaaaacctcatggccatttaaattattgtataaagatctttagtctaataagaggaatgatgttattttgtgaaatctaatacag<br>aatgcaaattgtatgatacaacaagagcattaaagtctatggagaaaaagactataaatatatgtaccacacgttaatgtggctattttatatggtggaa<br>ttattgctcattttaattgcattccatgtaacttctctgtctttcccaaattttatatactgcttgtttaatttttatcttttgtaatta<font color="green"><u>AAAAACCTTG<br></u></font><font color="red">CTTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAACCTTG</u></font>attacatgttttattttattttttcacatagagataaaacgcctttttcga<br>aagtagttttgtggtagtaaaagttggatatacactgaccctggtaagcctgctgaaaatttcagatagcaacccagacttctagaaatcagactcatat<br>ttgaaggagttttctctcattttggtgaaagtgaaaagccgctattttgtatctgccccgggcgtttgtggtgggagcccccagggcgtcatgggcctga<br>ggtccttgcgaccccaagcgaccgcagtccaggtgtctataggagagcttcctctcctacatcagaatatgggtccacaaagggaaggcttatccactgc<br>tgggggaatgtcattagctcagtcactgtggaaagcagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MYOM2:NM:003970:14/37	
0	chr8	15387304	15387593	1000704	0	-	13355; RIP_Alu_chr8_015_02	NA	NA	SINE	Alu	Yb8	ataataatggtaccatgaagatgaaacaagtgaatacatgcgaagtctttagcatctaacacattataaatactacatattaactcccattatgatagta<br>gcttttctagaaatatttaaccaaatttcacacatcaacttatccactatgccagacactagggtaaacacaggagtaggggcaagaaagaaatgatagg<br>caaagtcctcatctgagaaaatgcacagatattcagtgtgtttcctttagagaagcaagcagatcagtgacttgtcaaactgtccttatagctgctgtgt<br>ggacaacagactaccagagagcaaagatgtaagcagagacttcagccccatattccaggtactgtatatgatgtaatacaggagtgt<font color="green"><u>AAAAAACTTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAG<br>CGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACTTT<br>TTC</u></font>acagaattactatacatatggcaacctgtattctacagaagacattataagaggaaaatccctaaatgctccaataacacagtttgaaaaccaatgg<br>ctggaaatattaggcatttatatttaatcctagccatttttctaaacatattgatacgttagatagtacatctaagtaatgttagtatttttcaaacagt<br>tggctatttaaagcaaattttctataatgactgttttctaaaaatattctaaagtgaaactgattttgtatattacgatacatttcattcaattattttt<br>aaactgtatcttcagtgaaatttcaaattgctatgtctatgtaatcaacagtaattaaagtattgtaataatattgataaacctcaactt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	16962223	16962528	1000705	0	+	Yc1NBC69;1815; RIP_Alu_chr8_017_01	CCCACATTTATCAGTACCTACA	CCTTGCAGAATAGCAATGAT	SINE	Alu	Yc1	ttctttgagaaatattgggtatccctattctgtttcttttattgaagctaacttttaaattgtgatttttttttaagcgtgctgatgacatcacaagttt<br>agtaacagatactacacttcttgtacacttttttggaaagaaaggaaaagctgagctcaactttgaagatttttataggtgagcttatttttatattttt<br>attaaaaattattagcctactgaaatcagaaggatctttagaaattgtctagtacagcaatactcacctctttgttactttaattttaaataagatcctc<br>tgtataataaatacccacatttatcagtacctacataccagtggttatattgataattataacaggaagttactgaattttttt<font color="green"><u>AAAAATTCCAGATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATTCCAGATATC</u></font>tggattgattgttatctcttgtatattcagaagaaagtatgttgccaattccttgtctcaataagctgcagtgatagt<br>aacaagtagtttaagtatcattgctattctgcaaggtacttttgttatccccatgttatagatgaggaaactaaacccctgaaaggctaggttatttgcc<br>ctgggtgctacagtcattaagtagtaaagcgatcgtgtgttcttttcattctcatttacagggaggaactttattaatctttgcatcatcatacaattat<br>ttccatataaccttttctaggacagtgagtatttgctcatctcctgttacgattactctttctttatctttttccttctttattacatttttgtcataga<br>ttcatg	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	524	210	NA	intron:EFHA2:NM:181723:10/15
0	chr8	17265616	17265925	1000706	0	+	pAlu8-17074912;955; RIP_Alu_chr8_017_02	NA	NA	SINE	Alu	Yb8	agcaaacaatgtttagtgcacgcaaagaaaaaaaacaccagaagaaaatgtacccaaatattaaaagtggctaatttctacatgtagtccatattacttt<br>tataaccagaaaattattatttgctaaaggaagataaaagaagagataacccttggagctgacagtatactgacagtgaatgatcaagagaaggcaaacc<br>tcatggatctgctgatgtccgtctatcacagacagaacttgaaaatgagatcactatttgcccacggtgaaaacagaattgtataattataagttgttga<br>gttcaacactaattctggcagggttctaaaatgagttatttaatggacctttgtatgaacctaaaaagtggaaaccatcaatcagc<font color="green"><u>AAGAACATCATGGA<br></u></font><font color="red">GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGACCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAACATCATGGA</u></font>ttcaccgtcattatttcagaagacttcctttctttctttgatgagctctttggcgacgtgatgaaggacaaactta<br>tcaactgctagatgacatcaaactgagagaactactgaatctgctattaggatcaagatcctgagagatgggggcaagtggcttaagaagtcacttctgc<br>tcttggataagacaatgaatgaggtaacagaaagcaagctgattaaatagtggatggtaccaaactgacaggaacagcagatgtgtatcagcatccaaaa<br>aagagtaagagatgagcaaaagtctaaattcaatgagataatattcaacgtagagaagtataagatattatcatcaagcctaactactaatgggtaactt<br>gatgggcatc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MTMR7:NM:004686:1/14	
0	chr8	19980278	19980577	1000707	0	-	pAlu8-19789476;18530; RIP_Alu_chr8_020_01	NA	NA	SINE	Alu	Ya5	tacggtcatcatgattattcattacgcacctatgatgtttcagttactttactagaaaaacaaagtcggataaaacctggctatgcctgcccagcaaccc<br>catataatagaggggctttgggaggtgggaggacttaagtatggtgggggcacaaagcgacctactcagccttcagccattcttaggggaaggggctgag<br>ggtagaagggagaaacttgtccagaggaggtgacatttgagctagaccttgaagcatagacaagagtagctttttctaaatgggagttgagcagtaaaga<br>cagggaggaatggtgggtgtattgagggaagataatggcagtggcagctgtaggcaggtctggcaaagcacagtcggattcctgt<font color="green"><u>AAAAAGAGGCTTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAGAGGCTTACA</u></font>cactagccaggaagcattcagacctgaacttacagtaagtaaggaggagtcagacagacttgcatttatgtcttaacgtggctgt<br>atttgctgtatttgttcttctaaaacatctctttgacagccatgtggaggttggggaaatattgtgagcaggaagaccagctaggagccttctacttaaa<br>agtgacctaaaagggggcatgagcagatctaatggaggcggcaggatgaattttaaaaggcagaatttataagactttgtggctgggctcagtggctcat<br>gcctgtaatcccagcactttgggaggccaagatgggtgaatcacttgaggtcaggagttccagaccagcctgactcacatggggaaaccccatctctact<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	30392291	30392581	1000708	0	+	238531;pAlu8-30248390; RIP_Alu_chr8_030_01	NA	NA	SINE	Alu	Yb8	cttgtgaaggatactatacacgtaagcacaaaataaatacttgttctggtttctagggatacattaacataattttaaaataggatttcagtcgttgatg<br>tttttaacattccctgtggatagatcaagggcaagtagcccacggctagccagcatagatggggaaccagaagaacgggggtggtggagttgctgagttc<br>ctagagcaggagaaggccatgggtgagagtgggagctcagttcagacacacagcttcattctggaattcctcacgtggctcacagaagagtttgcttatg<br>tgtgtgtctagatttatgttatttgtgctatgaagtatattttggggttctgattcatcagtttcctaggtcagtggcaatctctt<font color="green"><u>AAAACTGATAACTA<br></u></font><font color="red">ACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAATACAAAAA<br>ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTGAT<br>AACTA</u></font>tgacaagttagtagtttccaccttttttcgtcaaggactggaacctttgcagatttaagaaaactgacattttcttaaaagtcaaggaaatgtgc<br>taaactgtaaatcattgggtggattacataattctgaagtttatatcctcttgctagttttaagttagttgtaggcactttgtaatatcgttaattttaa<br>ctaacttttcttgaatatgttctgtgtgccagacatatgtgctaaggataggagataacagttttgtgaaggacatagacacagaaaaagaaaatttttc<br>gtataagcagtaggtgcagtgttcagggtacacatagcctgttttgggaggtgtaagaaaggatatctggtctttactggattttcaagag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RBPMS:NM:006867:5/10	
0	chr8	41279345	41279651	1000709	0	+	pAlu8-41020191;13335; RIP_Alu_chr8_041_01	NA	NA	SINE	Alu	Ye5	tgtaaccctaccatcatagcacaaagtcaaccatagataacacataaatgaatgagtgtgactgtgttcaataagactttactgacactgaaatttggat<br>ttcatataatttttatgtatcataaaatattacttggatacttttccaactgcttaaaaatgaaaaaaaaaattggcccatgggtcatataaagataggc<br>ggcaaaccaaattggctctcgggccatagcttgctgaccctcatacagaaaaatgaacactagatttagagaagtcccaggctggagaaccgctactttt<br>gcttgtacaatgtgagacactgggcgagtcaaatgagttcaaataaattcttagggccttgatttactgttaaagcattggatt<font color="green"><u>AGATTAACCTTAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAAGCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGATTAACCTTAAAAG</u></font>ccccttcagccctaaaaactctctagtggcttctgtttccagtggcttctgtttccagtggcctctgcatatggcag<br>actggttgagcttttaaaaaattcctttcaatacaaaatacattaaaattctgggtaaaataaaatgtcgttcaaaaaaccctcactaaggccgggcatg<br>gtggctcatgcctgtaatctcagcactttgtgaggctgaggtgggtggatcacaaggccagaagttcaagaccagcctggccaacatgccaaagccccgt<br>ctctactaaaaataccaaaattagccaggcgtggtggtgggcacctgctactcgggaggctgaggcaggagaatcgcttgactctgggggacagaggttg<br>cagtgag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	42585910	42586238	1000710	0	+	238640;Yb8AC1413; RIP_Alu_chr8_042_02	CAGAATCTCTGTGGCTTCCTG	TGACCAAAATAGTTTTCTTCTGTGA	SINE	Alu	Yb8	tggaaatatgtaacatgcaaagtgtgtgggcctgggtgagatcagaggccaggctggctcaaggtgaatcctgtactgagtccccagtagggtcacgcag<br>tccaaccgggacaatttccttttcttaataaaacagtggcttggtaaagctaacagaaacttgaagatttcaagatctaatacattgaactttcggaata<br>aaatcacagtgtactaatttcatgcaggaatggacagaccacaagttacgctggaatcctgatgattatggtgggatccattccattaaagttccatcag<br>aatctctgtggcttcctgacatagttctctttgaaaagtaagtatcacattgtttcttacttatggggaaaaaaataaattttt<font color="green"><u>TAAAAAGTGAAAAAAA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAATA<br>AATAAATAAATAAATAAATAAATAAAAAA</font><font color="green"><u>TAAAAAGTGAAAAAAA</u></font>ggaaagtaagtatcacagaagaaaactattttggtcagattaacactaggaatag<br>aaaattctgattcaggcaaaatacttaaaagaaatattcaattttaaataaaaaaattgtttattaaaacagttacctggcgttgtggtagaaaagtcct<br>aaaatagggcagggtgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcaattcatgaggtcaggagttcgggaccagcctggcc<br>aacatggcgaaaccctgtctctactaaaaatacaaaaacttagctgcgcatggtggccggtgcctgtaatcccagctactcaggaggctgaagcaggcaa<br>attgcttgaacccgggaggcggaggttgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	481	140	NA	intron:CHRNB3:NM:000749:4/6
0	chr8	54204897	54205198	1000711	0	+	19086; RIP_Alu_chr8_054_01	NA	NA	SINE	Alu	Yg6	gtatctaggtcttgttctttcttctatctttagcgcttagcctagtatttcacgagtagtaagagctgggtctgtggaagagctaagtatgcacacagtg<br>ctatccattcccaggagagtccagtgcttagaaatatccctggggcccagggaaatgattatcttttctcctctaagatagaaaagatcttagaggagat<br>agaaaagatagtcttttctcctctaagaagaaaatttatttttatagatgcttccccttaccacaatacatcaaaaatagaaaagaagacataaaaatca<br>ttcaaggcaatattatcaaagaccataaagtaaaatattttcttaaagtaacaaatccttgatattttcttatgtcaggtttgact<font color="green"><u>AGAAAAGCAAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAGAA<br>AA</font><font color="green"><u>AGAAAAGCAAAATC</u></font>agctaaaacatgtctagacagtgccaagttctccctcaacttgctcttctgaccacaaatgatactttgggtgcttttatgcat<br>aaactctcgcctacattaatgtttgcagtgctctgtgttcataaagttgctgcccagaaaattatgagcaagaaaaatttgaaagtgtcctgaagagagt<br>gaagaatcacttgattttatgaacttgctctttgttgacagagtaaaataacacttaaagtatcattcaacctactctaccaaagtgcagtacagattta<br>aggaaattacatttaattcagacaaaaagaagagcttaacacaaatgattcaaaactcaatgatctatttggttcaaattcattatctactattagtttt<br>tt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	56401218	56401518	1000712	0	+	3422; RIP_Alu_chr8_056_01	NA	NA	SINE	Alu	Ya5	aagggatgtaaaatgatgcagccactttggaaaaactaaacatgctcttatcatatgatccaggaatcacattcctagatatttactcaagttagttaaa<br>aatgtaaactcctacaaaaatgtgcacacaaatgtttacaacaactttattcataattgccaaacctggaagcaactaggatgtcctttgatagataaat<br>agataaactgtggtacatccagacaatagaatattattcagcactaaaaagaaatgagctatcaagccacagaaagacttggaggaattttaaacgtatt<br>gtactaagtgacagaagccaatctgaaaagacttcatattgcggaatttcaactatatgatattctggaaaagaatggagagaat<font color="green"><u>AAAAAGACCAATGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGACCAATGGT</u></font>tgctggaggttagggggctgacaaggatgaatagatgggacacaaaagattctcagagcagtaaaaccactctgtatgatacta<br>caatggtggatacatggcattatacatttgtccaaacccataggatttacaacacgaagagtaaaccctaatgtaaacagtaggctttcgttaaaaataa<br>tgtattcatattggctcatcaatgtactgcatcggtaacaaatgcatcacaataattaatgcaagatgttaataataagggaaactggcagaataaggct<br>atggaaactccctgtactttctactcaattttcttataaacctaataccgctctaaaaaatagtctattaattttttaaagatgtaacttaatagtaacc<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	56967332	56967469	1000713	0	-	5183; RIP_Alu_chr8_057_01	NA	NA	SINE	Alu	Y?	aggcgggtagatcacctgaggtcaggagttcgagaccagcctggccaacgtggcgaaaccccatctctagcaaaaatacaataattaggtgggcatggtg<br>gtgcgtgcctataatcccagctacttgggaggctgaggcaggagaatctcttgaacccaggccggaggttgcagtgagcccagatcgcaccactgcactc<br>cagcctgggtgacaagaagaaaactctgtctcaaaaagaaaaaaaaaaaaagaagaagaaaatcaatgaatttgaacttagaaacaaaatgtatctgaaa<br>atgcaatgccttgaatttcttgtctcgctcctatctggtacagcattccctgaacacaagaagtttacattttttctttctgctt<font color="green"><u>AGAAATCAACCTGGG<br></u></font><font color="red">TACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCG<br>AGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATCAACCTGGG</u></font>gtgactgcttttgcagttaagtaggtggttaataaaaactaaatttt<br>tctctatttgaataactatgcgtatccctgataagacactcaggcaccttggtagccactgaaatgaattcaccatacatcaaactaatagaagcaagag<br>aaacaatctggcaaagaaatactcaatgaaataaattccaaacatctgtttccttttatatttattaatcattgcattctcacaatatttcagccaaagc<br>ctggggaaagtgagaactctacctatttaaataagttcaacaaaaagcccataataaaatatttagcataagacacagatctaaaaaatgaaaagacata<br>gatctaacaaaactgcaattaaagaactgtgcattgtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	61526797	61526798	1000714	0	+	30856;pAlu8-61249965;1104685422571; RIP_Alu_chr8_061_02	NA;NA	NA;NA	SINE	Alu	Ya4	ataactgtaatgttcatagcattgacttttagcagttgagaagaaaagccacattttagctacctcatatttctcagttctaagagaaaactaaaagtcg<br>cttgtttacaagataccctgctctgtagcatctgttcaagatatttaaactgtccaaaatactggtcttacctaatttttatcatgccaccaggtggcag<br>catgttatgtaaggaagtaatttaaatattctattgaagatcatttattttcaatattttgccttaaaaactgcccaaccataataaaaaataaaatagt<br>atctcatgtttccctttgcctgcattctctccagtctattttaaagaccctgttagcacaatatccgtgagacctgccttaat<font color="green"><u>AGAAGAATGCAGGGCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAGAATGCAGGGCTG</u></font>agtttttttcttccatctttatggagatttgagccattgggcttagattctgccaactaaatgattttattccta<br>cctaaatagttcctattgttcagcaacaatagtcctcctcatctttgtgtcttccatggtacctacagaagttctgaatatgtggcaacgatttttttct<br>taatagagacaggggtcttactacattgcccaggctggtctcaaactcctgacctcaagcagtcttcctgcctacgcctctttcagagtgctgggattac<br>aggtgcgagcctggccagtgacaatagttttaacaggtgcccttgggtaaatgtcagtgatatgtaagatccacattagcgtgtgtatttactgaatgtt<br>tatttgaa	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RAB2A:NM:002865:6/8	
0	chr8	62930151	62930455	1000715	0	-	239003; RIP_Alu_chr8_063_01	NA	NA	SINE	Alu	Ya5	aaatctataaaagtatcccaaatacaatttctactaatttgcagttatgccttttgaagctgcctttgtgtgccagagtattctttcagtgacttttttt<br>ggagcgattttgaaggcaagagaaaaaaatatctactcagcactactcagaattcctttagttttattttcagtttctcaccatacagaatcccctccag<br>ctagagcagctgtaactaaaagtctgcttgatgctgcactggggttttgctttctcactctcctgtgcccacttaggtttaagatatggggctcaccatt<br>aaatgttttctgaattagtaactgagaatagattaaatgaggaaatgaaattattatgatgagagcatgggagagtggttaccataaacaac<font color="green"><u>AAGAATAT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAATAT</u></font>atggacatgactccagcaaaagaaaagggaatatatagctgagattataacagtgagagatggcagaatatgaggtgcgtgttaaaa<br>atacgactgtcttgagatccataagatttggctctgagagttgtgggaatctctcaggcgcacattcttgacaataaacaattgatgtttctggtatttt<br>ttctttgttataaaatttactcagtcgacactatctctgggaagaatacataagaaatcgtctctgtttttggtatacaatctagtaagaagcctgtcaa<br>gtatacagacttacaatcagaaagacccaaaattgttttttaatctaacttgttcattttataaataaaaagactggagtataaagaggttcaacaagcc<br>catta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	71914580	71914581	1000716	0	+	16002;pAlu8-71637776; RIP_Alu_chr8_072_02	NA	NA	SINE	Alu	Yb8	tcagagaatacatgagatcagccttaaaaaggtagattagtttgggttccacttttatcatatatatatattggaaaatatctatcagaatgtttcatat<br>gtttaagtacaaatgatatgatgataataaatcaaatcttccaagtctttaattgaatactggctatcatgaggtcgtaagagaaattccactactgttt<br>tcaggccattgtgataccatataaggaattggctgtcattttagtaaatgtagttaattctatcatgtcctaataggctgggtcagtggtcaaattgttg<br>gagagattggggttgacgatagtctataaactacgaggaagggctcaccatatgtggtaagagttttgtttcaaataattttaatct<font color="green"><u>AAAATAAAAGCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AATAAATAAATAAAATAAAAA</font><font color="green"><u>AAAATAAAAGCTA</u></font>agccgtggtaggtttttgttttttttccgaaataattccagttgtgtttatctatattatttttct<br>tttagtatgttctgtctctcaattaacagcatagtatattagctttccaattctgtttattgtatctttaagtaaatttaatttatataaaatagtctaa<br>aataaagggcaaaacacatacattcaacaggcaacttctgttttatacggtctccctttttactcttttttattgatactattgtaactacaataaaaac<br>acacttgcctttaaatatgccattcggtgaagcttcacaaccactacaagtcctagtgaaaatgctgaaactcatgctttgagaagtgaatgatgatcac<br>ctaagctgtaaaaaaactcag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	76126903	76127212	1000717	0	-	79754; RIP_Alu_chr8_076_01	CTGACAGACACCTGAACTCATCC	CAGCATAGTCACTCCTGTGGAAGAAC	SINE	Alu	Ya5	ctgtgttggataggcctgagccagaattatgctgcaggtgaaaagagggaggcaaacttctcccttcatgtattattttgtaactgatttacatgtgatg<br>tgggatgttttctggtcagaaagtaattggacgtttccattactgatattcaggaatatacaaagaaggctaatgaaacgttaaatttaaaggagaaaca<br>atggatttctgagagaaaatgcaccacaaaccacagccaataatattttagcatattgcttgttaagtggtgggtctgacagacacctgaactcatcctg<br>accagacagctggttgatatttttgccatgtgagaaattgatggggtcaggtacaaaggcaacatgagtgcttcctccaatatgtt<font color="green"><u>GAAATATAGTTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAATATAGTTTGA</u></font>atagacataatgcataacctgctggttcttccacaggagtgactatgctgatattcatcattaaagaggttcagaa<br>attatatatggtaattttaatttgtaccattgatgccaaagcacagtcatattactgcatagaaagaaaaataagactatttctctaattcttgctcagc<br>ttccataggaaacatgcacagagaagcaatcaagtagagtgtagtggggtaaaacagccctcagtttgagacagttttcctaattgataactgtgtgtga<br>ccttagacaagttatatatatttgctaagatatttcttattggtccagtgaggatcatatacctacatcataaatatgctgttaagacaatttctgccat<br>gtggtatatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr8	91515431	91515683	1000718	0	+	238711; RIP_Alu_chr8_091_01	NA	NA	SINE	Alu	Yb8	tcacacataaacacacgcacaagtatagagcccagctgctctggttgaagtggaggggacccacagacttcctgctatcctacccaatccctaaaatgat<br>ccctgagacaccaccaggagttccagggttccacagaacacagtttgaaaactcccattgtaaggtaatttttaagaatgctaaagtaaatttaaattgt<br>atgactatcagacaaaagctggggaaataactaatggatcaattcaaatggtttcaaaatacaatcatgtcaagataacctctttatttcctgtcagaca<br>ggcatcatgctagtcctcatatctttgtaatcccaggaacatcagactctaaggagcggccatcccatatgtcacctcatgctt<font color="green"><u>GAGATACGGTGTTGGG<br></u></font><font color="red">GGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCC<br>AGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCTCCGGCCT<br>GGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGATACGGTGTTGGG</u></font>gagctaactgttcagttacttcacttcctct<br>agctccatagttctcaacccttgctacacataaagtaattgatgaactttaaaaatatatatacacatatacaggtcacacccacgaacaaatgattcag<br>tcagactctggggactgagcctgcctggccctgtttcgagaacccatcctcaggtgatatttatgtgaaaccagagtacagagccaccaagaagaactcc<br>taatttcctttttctgttttcaaaagaatatatatctagttgaattttgactcctcaaagttgttttcctctaaccatgcattacacagggacccacagc<br>ctatcagacattatgccacacctaaaatgaattaactcctataaagtaaaaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	95794722	95794723	1000719	0	+	18601; RIP_Alu_chr8_095_01	NA	NA	SINE	Alu	Ye5	tttgctacataacagaatgccacaaaacttagtggcttacaaacaataaacatttgttattccacaccatcttgagaattagcagggttagggtgctggg<br>gaggattgttttggtctgggccagctccactgggactggatagtctagggttggctatgtgtcagctgaggggatcaaatttacttggccctctgtctct<br>catcatctagcaggttaacttgggcttgtttacaaggtagttgtagaattcccaagagcagcaaaagagggcaattctcaatgtcaagcatgttttaagt<br>cactgcttacacggtgcttactattgtcctattggccaaagcaagtcacatgattaatactagcattccctccaagaccatgac<font color="green"><u>AAAAATGGCCACAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>AAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>ATGGCCACAGTA</u></font>taaccagtctattccatggatggaaactatgaaataactacattgaaatttattaaagacataaaagaagataagaaaacatgaaaaa<br>gtgatgaaatactatcaaaaaagaccagaaaaatatgggaaaaaagacaaaaagtgtttctagaaatttaaaattggtttatagaataggtatatagaaa<br>caagaatagattttattataatgtcttgttactataacatatcttctattttatacaaatagttttctttagatcacccttaactattacccattaatac<br>tttttgtaaattctgttttctattgttgaacactgccttgtgttatcattaacaaaagaggaagttacatctctgtatgatttaccacagtatttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DPY19L4:NM:181787:16/19	
0	chr8	97098089	97098425	1000720	0	+	pAlu8-96766781;17182; RIP_Alu_chr8_097_02	NA	NA	SINE	Alu	Yb3a2	aaatacgctcaacctaattctgttttattgcgtggttttcatgggtcacctgacgtgtctatcaaaggagtggaaggtagtttcctcaagaatctatgag<br>ccacaatcacccacagccacctctcagtgactgtcacttgtgtgaatgagctgggacccaggctctgggtcattccactgatatggcttgagaagcacac<br>aaaatgctgtctttcattcttctgccaggactcctggcccacagtcagaatatggccttctctgcactgcagccactgcacttgcattgatgataacaag<br>ggctatccctcgcagggttcctttcatttgcaggtactggcctaggtgctttgtatacgttctcttgtccccataataatacctt<font color="green"><u>GAAAGAGAGGTATTA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGAGAGGTATTA</u></font>ttgcccccattttgcagatgagcaagctgaagctcagaaaattgaaat<br>aactttcactaattcagtccacgagtacttatgactctgctaggcattttgccagactctcaggatacagagataaagcaccaccaccctcaaggtgctt<br>gaggtctggtgagagttccagacacagaaacagataaatgtatcacaggaaattaaatgatagaactacgaacagggtattgtgggagcagagaggaagt<br>gcaaggaatgcggggagaagaaagttcagaggaggcttcctggaggaggtgacacacgaactgagtcttcaagtctacataggactcaggtacagagatt<br>gaggggaggaaaagcaattcctgggagagagcaaggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	98783462	98783780	1000721	0	+	Ya5-MLS23;11223; RIP_Alu_chr8_098_01	NA	NA	SINE	Alu	Ya5	tgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaaccggcacattgtgcacatgtaccctaaaacttaaagtataatttaaa<br>aaaattacaaaaaaaaaagaataattgtggaagttgcgaatcttacaacctctgggataacggctggtaatatttagaattccagcccctctcattctaa<br>cttggtggctggtggccttttattcatttcacaaggacagtttagctttgaggaggggctattatttaaattataaactaaattccttcctaaggctagt<br>tggggctatgcccagtaatggacaaggagagttcagagattagaggcaagatagagttagttagagctgatgtctttcacttgtcat<font color="green"><u>AATTTCCTTAGTC<br></u></font><font color="red">GCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTTCCTTAGTC</u></font>ataactttgcaaaggcagtttcatttgttcttttgaagccaattcccatactctcttgcacccaaaca<br>aatacaactccaaagacattgacactaagctttatttaataacctttaactgcaatggcatttttctctctccttttttttttgttatccagttaggttc<br>cctctattctttattttcttatctagagaaatttggcaactgtctgtaagttcagatcttgaacagtaagatttctaaaatataaaattcccttgaatca<br>atgattgatttgcctaataaatatgaaattctggtggggagggaaaaaggaaaggtaactatgggagcttgctgggagtttaattgttgaaaaagtctca<br>ttcaagataccatttccta	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic	
0	chr8	104382914	104383219	1000722	0	+	4197; RIP_Alu_chr8_104_01	NA	NA	SINE	Alu	Y	ttcctcattcgtttatgagagtagcccaggaggcatctacccctcccaacccgccaggattgctgagaggacagagtacgcgtgcaaggttttgcaatgt<br>gccagagcttagtaagtgttagcacttatgaaaacagcgtttatatatcatttgggtcatgggactcttggaaaacctgatgatacctatggtttcttcc<br>tgcctccgccccacccccaccttccagcctccaaaaatgtcacctccaaaaaacaaataaggcagggcgcggtggctcacgcctgtaatcccagcacttt<br>gggaggccgaggcgggcggatcacaaggtcaggagatctagactatcctggctaacacggtgaaaccccgtctctactaaaaata<font color="green"><u>AAAAAATTAGCCGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAATTAGCCGGG</u></font>cgtggtggcgggtgcctgcagtcccagctgctctggaggctgaggcaggagaatggcgtgaacccgggaggcggagctt<br>gcagtgagcctagatggcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaacaaacaaacaaacaaaaaacaaataagactcgcc<br>gacccatgccatagattgacgacccttgaaggtggctcgtgtacccaggttaagccacgtgtctctaaaatgttcatttaggcggcgctgtgttacctgc<br>gggaatccccgacctgcggctcctgaccacgggccaccccgcccagaccctgcaggcgggctctccacgagggtctgcgcagccccgcgggggtcctgac<br>aggccg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	promoter:CTHRC1:NM:138455	
0	chr8	107511109	107511418	1000723	0	+	7118;pAlu8-107179801; RIP_Alu_chr8_107_01	NA	NA	SINE	Alu	Yb8	gttttgatcaaaaagctttatacgaaatccagaatcctttaaatcacagcatggaccatagaaatgtgttttatttaagagactttaattcaagactgtt<br>gttttaaatcatgattgcatctttatgtttcattcaactcacatgttaagctgtgtgtgtgagtgtgtgtgtgagtgtgggcgtgtgtgcttgtaagtgc<br>atgtgtgtgcatgtgtatgtgtaaattacatgatgcatctgggcactcattgcagtatgtcacttaaaaactttaaaaaaatgtttggagttaattttgt<br>tccaagataattttatgtgccattagttcatctcatcgtcttatataacaaggaaccaactgatgcaggttttacctttttagct<font color="green"><u>AAAGAATTAGGAGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAATTAGGAGAT</u></font>gtttaaatgttatatcctgttttccttgacaactataattttgcttgggagatgattaccagaatgactgctaaa<br>ttactatttttctattggtctaatattttattcttatgaaaaatgttatttctagtggtctttattgaagaccagttgatgagggtcctcctaagtcagg<br>ggaaagagtgtatacgtttcatgtaaaatatccttcctctttgtaacccaaacctttgtatagcttggtttctctttcttagtctatgttgacagcagta<br>caaatagcataatagattcttctctgtatatttagagggtttttttccataaacttatgtgatactttgcttttactgtgtaggaatgatgaaaacacac<br>aacagaccca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:OXR1:NM:018002:2/16	
0	chr8	109730176	109730486	1000724	0	-	19560; RIP_Alu_chr8_109_01	NA	NA	SINE	Alu	Ya5	ctctcacagttcaggactcaggtcccacccacatttctctctctctgttagtgttgtcaaaaatcctagtgtatcacagctgttctgtttctagcaggtg<br>ttatcactaattagctcttcaaaactaaacacaagaggagtctgcgctcttccccaagtactatcagccagctgctggctttctgctgttgtgaacagag<br>gtttgcaggcattttcattcatgtaccactgtaggtaataaaactctgagcacactccaatgtatatatatttatttaaagtatatccatatgctgtatc<br>aatatactatattaatacactgcatatttttctaactggtaccactctttcatctattcacagtacagcagccagggggtcctttt<font color="green"><u>AAAACCTAAGTCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAACCTAAGTCAG</u></font>atcatatcactagaaaccgccaatggttccccatctcactgagaacaaaaccctaagtccttaaaatgcccctga<br>aggtcttatacaaccagttcaccacctctcattcttcctcccttacgccactcaaggcacacttacctcctgctattccttaagcatatttccaaggcat<br>atttcccactcagggccctgttccctctacctagagtccttttcctccaaatccccacatgaccattccctcgccccttctagtccctgttccaatggca<br>tctctccagtaaagccaccttaatcattctgtttaaaattgcaactcactctcccatccccagcattccctatctgcctgtcaccctttgtttctctctg<br>gagcatttatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	110510321	110510629	1000725	0	-	pAlu8-110179004;Yb8AC702;9160; RIP_Alu_chr8_110_01	TGTTTGGAAATAAGCCAAACAAT	GGGTAGCAACCTTTTTCATCTTT	SINE	Alu	Yb8	agaagatttgtaaaagactgtgtacttgcctgagatgtccaaaaggccactgatggcattgtaactcatgattcctgcatggggctttcggggtgccatg<br>ttatgagctgaagcaaaggtaggccaacaaatcccacttctcccaccttttaccaaaaaagaaaaagttaatgaaaattgaatatgcactcatatgaaca<br>acaacattaaagtttcaaatttttcacctgatggagatctaggactccgatgagcagcagtgagttcaatattaggatcatcattagttaggacatcaga<br>gcaattaaacccagggctacttccaacaattaatgagctctgtttggaaataagccaaacaatatagcattaataatagctcttact<font color="green"><u>AAAAGAAAACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAGAAAACATG</u></font>ataatgaatagtactaaattctactgtagtaaataaaatgcaaactataaattcaaaaagtggatcattcattaaaca<br>aagatgaaaaaggttgctaccccaactggaaaagcactaagaataggagagggaagacagacatgtaaataattacatataaggacatgttatgtttctg<br>tgataaatacatccagggaacagtaggcacaaaaaagtggaggaagtgtcattaccacctaaactggctcagaaaaaacttcatagagggagtgaaaatt<br>taactatttcaagattagcaggtgataagcaagaagagggaagggaggaggagagataagaatgaacagcttttttgttgggtgcggtggctcacgcctg<br>taatcccag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	482	161	NA	intron:PKHD1L1:NM:177531:65/78
0	chr8	112168239	112168578	1000726	0	-	pAlu8-111836927;3230; RIP_Alu_chr8_112_01	NA	NA	SINE	Alu	Yb8	ctacattgcctataatattgagggattgaaggtggcagaagtgtaataagtaacaaatgcaacaaatcatcatgattgctatgaagatttaacactacat<br>gctagaacatcttttcaggagtatttcttagttgcaatgatcataattaaacagatatttctcttcttatagttcagaaagtatgatagcactaagaaga<br>gcacattaggatgaaataatatattcttgcaataatttgatgcaaatatatagtaaatttagaaaataataagagttttaataaaacaataagagtttaa<br>taaataaacttatctaagtaaacatgagtttaaaaaataaaacaataagacttttaataaaatttagaaaacaataagagtttttat<font color="green"><u>AAAATAAGATTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATAAGATTCC</u></font>aatatcacactctaatagtgtaaaaaggcttaatgttaaaaattaca<br>cagtgggtgcataatatatacctgaatttgtagaagttttatactattttaagggtaatttgataaaaatcatgaaagaattacatgaagttatacctaa<br>ggttatatttaaaattatattagtgtggttgttgaattattataggaatagtacgtatcttaacataataccattttagataataaattgtcaaaggaaa<br>aaaatttagagaagttttatataaaaaacaaccaaactgcgtctttctggagtactaactaaaagtatcttggaaacaataaatagatactctagttttt<br>atcataatccactttgggatatacagccagcacacagtag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	113085437	113085753	1000727	0	+	298; RIP_Alu_chr8_113_01	NA	NA	SINE	Alu	Yb9	ccctcttcacactcttagcagctacctttggcttctacaaatttatctccattcaattctcatgttagcttgcaggatatgtcaaattcaccaacatttc<br>tttaatatcctcagcattatattcagagaagtgactcagcaaaagcctatgctatttggccatttgtctatgattaaaaatgtaaatttacatcacagtc<br>actctatatgccaaatgattatttcagacaaagagtgctatagaattaaaaacctaaaagaagtaggattagcatacaatctacataatgcccaatatgt<br>caaactcatatccaaaagagctacaaaataaatacataaataaagaaacagacaaacaaatgcaggataggagactccctaatactt<font color="green"><u>AAAAATAACTGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAACTGAG</u></font>agggccccagccaaccacattcctaccatgggctcataattctagccacggggtagcccctcaaccttca<br>tgggccctgagactaacatagagagcccccttgaaaacacactaaggcattgctgcagagaagaagctgacactgggtccccaaaatccttgagtcctta<br>gtaacagcacaatgccccagtggtgggacaggagctcagcccccaccattctgtgtcctgccctgcaaccagggctgagacaggagccatggacagccat<br>cccacacgctaacacccactattgcagaagggcagccatgcatttttatgcatgcggaggacaaattccactctacacaaccagtgcagactgcccatct<br>ccctcacccgcccctcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	116488234	116488545	1000728	0	-	pAlu8-116156926;238954; RIP_Alu_chr8_116_01	NA	NA	SINE	Alu	Ya5	aatattgaggacctaaaattgcaaagtctatataaaccaagagctgcttgctggttaggcagaaaccaaatttcctcctagctctgccttgcattttcaa<br>tcagaattacttgtttgttacaatatgattttcttcaaaaatagatgctctgaggcaaaaggcgagccacaggctatatgttgaatagaaggttgattag<br>ttggccgaacttcaggagtgggagcctgaagccatgcttcctagggaaataactccctctctgatagtttgttttgctaattactagtcccaatttgagc<br>tcaatattaccaacaattgctttatagttacttatgagtcaggttcaacattttatgctgattttacttgcacttaaacaaat<font color="green"><u>AGAAAGTATATTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAAGTATATTTTCTG</u></font>aacacctctttttggtaaagcatgttgtatatttgataatttacaatttagtttgctgttttcttttgttc<br>tttgttgcttactttctgtgcttcaagtttattgaacttcaagtttattgagctagaacttatcacagatggtaaatgtggaaaatgtgatggatgtaga<br>actcctcccacataggagtgaaatgggagactacttttgttttgtaattgatagtatgaagccttacatggactatcttcaatatgcattcattacatga<br>tacattcctggtattaaattgtaatcgtcgagatagcactgctaaacgagatagcactgctaaagtttatgtctgtggtttactatttagtataattatt<br>cttagcttaata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TRPS1:NM:014112:5/7	
0	chr8	118223543	118223809	1000729	0	-	7894; RIP_Alu_chr8_118_01	NA	NA	SINE	Alu	Yb8	catgaactttaaaatcatttttttctagttctgtgaagaatgtccatggtattttaatgggaatagcattgaatctataaattgctttgggcaaaatggc<br>cattttaatgatattgattcttcctatccatgagcatggaatattattccatttctttgtgtcatctctgatttctttggacagtggtttgtagttcttt<br>ttgtagagatttttcagttcccttattagctgtattcctaggcattttattcttttgtggcaattttgaatggaagttcttttgtgatttggctctcagc<br>ttggctgttgttggtgtatagaaatgttagcaatttccgcacattgattttgtatcctgagactttcctgaagttgcttatcagctt<font color="green"><u>AAGAAGCTTTTGG<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCTTTTGG</u></font>gcttagatgatggggttttc<br>tagatacagaatcatgtcatctgcaaacattgatagtttgacttcctctcttcctatttgaatgcccttaatttctttctcttgcctgatttctcttcca<br>gaacttctaatactatgttgaataagagtgatgagagagggcatccttgtcttgtagcggttttcaaggggaacgtttccagtttttgcccattcagtat<br>aataatggctgtgggtttgtcatatatgactctcattattttgagatatgttcattgaatacctagtttattgtgagtttttaacaagaagggatgttga<br>attttatcagaagcctatatatttttcccaaacttcgactcatcttccctgttcttcattttccaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	121854760	121855061	1000730	0	-	pAlu8-121523451;7437; RIP_Alu_chr8_121_01	NA	NA	SINE	Alu	Ya5	cattatttgcacaactggatttagccctcctgaagctagaaaccttctgaagttttaaggtttttttgaagggttcaggctttacacaatggtctcagct<br>acaatcttttgtttcatacgagcccattttctcctgagccagtgtgtaagcctagcaccctaggttaccaaggcaagaagcacccactctaggacttgca<br>cagtttgacgatattgacacactcttttatagctctctgggcatccagtgtcttcccttatttactgataatctaagttatgctttcaaaagatataact<br>agcactatgaggtgtttttgttaggagagtttcaggttgtctatttgacgatgtttccagatataaaagtgtaactattttttta<font color="green"><u>AAAAATATGTTTTCC<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATATGTTTTCC</u></font>catggtaaaatataggttgtcttctttctgacacaaatagccattgaaaagctgtattgcaactggatgacaactggcaaagg<br>ggaaatataattttcctgtttatccctctttgtttctcaatgtacttctgttaagctagaggtctaagagcagagaacatatttttatttgagcattctg<br>agtcagattaattagtccatgttttcaaaatgctttttgagatgaaatctttattcatcagcaaacctgggggttttttttgttatcataatgatagcac<br>cttttaaagatgctaattggcccacctgccatgaaagaacaacttcacctttgcatttaatgactagagacaacatacctaggcatcctatttattaatt<br>ca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	130907682	130907683	1000731	0	+	238394;pAlu8-130578553;Yb8AC1416;1104685372411; RIP_Alu_chr8_130_01	AAAGGGCAAGAATAAGGCAA;NA	TGGATACCACCCTTTTAATGC;NA	SINE	Alu	Yb8	caatcgatcctcccacctctgcctcctgagtagctgggactacatgcccgtgtcatcatgctagtgtgtgtcggcggggttggggtgggggtgggggtgg<br>gggtgggggcaggggcagggggaatactgttgttgtttgtttttttttgtagagacaggatctcatcgtgttgcccagactggtctcaaattcatggcct<br>taagcaatcctcccccaccctggcctcctaaagtgctgggattacaggcatgagccatcatacctggcagctttagaaattctggataccacccttttaa<br>tgcttatatacaaggcagatactttcttctaggatctaacatatcttaactttgtttatggtgttgtttgtcataacagtccagttttt<font color="green"><u>AAGAAAAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAAATGA</u></font>ttactgtttaaataataattcttcaaaattgccttattcttgcccttttattcactcatgtgattgtcaaattctac<br>aaaaaaattctgatgggattttgatttgattttgcattaaatatataattgccatctctataatttcaatcattttgtcatttaatctatgaatatgaca<br>gattacataaattcattttctgttgctaaaccattcttgcattcctgagatcaagtctgcttggttggttatttatttatgtatttatttatttatgaat<br>aaatgaatgagggtgaatgaataaatttgaaacacggtcttgctctgttgcccaggctggtcttgaactcctaggctcaaggaaacctcctacctcagcc<br>tcccaaggtgct	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	500;NA	177;NA	NA;NA	intron:FAM49B:NM:016623:4/15
0	chr8	132393344	132393345	1000732	0	+	19655; RIP_Alu_chr8_132_01	NA	NA	SINE	Alu	Ya5a2	ctgaccctcactgggtggtctcactggatgataagggcctctgttttctcatctctacactgcagtagggttcagactataggtatttgttgagccatca<br>gtaaatggtaggcctttggaatactgagataaagtagatctgatccacaccttgttagatcaatgaggagacaaatatgcaagcagaacactttctacaa<br>gatgcattaagtactagagaatgagagtgaagcatttaaggaaaatcatttcattttgacaaagtaataaaacacatcctattcaagtgtaagaactgta<br>gaataagagttgagtaaaggatattttaaaggtgattctgaaaaataaaatgtccagagatgcttgaggtttcattgaggcca<font color="green"><u>AAAAGAAAAGCATTTCT<br></u></font><font color="red">TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAG<br>GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAA<br>AAAAAAAAAAAAAG</font><font color="green"><u>AAAAGAAAAGCATTTCT</u></font>aagagagttttctggaaatttcacttaagttgagagttaaagagatgagttactctttttttttttttt<br>tttttttttttgagacagagtcgctctgttgctcaggctagaatgcaatcacacgatttcggctcactgctgcaacctctgcctcctcggttcaagtgat<br>tctcctgcctcagactcctgagtagctgggattacaggcacccaccaccacacctggctaatttttgtatttttagtagtgacgggctttcactatgttg<br>gccaggctggtcttgaactcctgacttcaagtgatctgcccacctaggcctcccaaaatgctgacattacaggtgtgagccaccatgccccgccatgagt<br>tgcattttgacagg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	134329461	134329766	1000733	0	-	Yb8NBC525;7874;pAlu8-134000238; RIP_Alu_chr8_134_01	TCTTCAGCACATGAGCATCTA	AACATCTGGAGGGATAAGCA	SINE	Alu	Yb8	gtgcttgtagtcccagctactcaggaggctgaggcaggaaaatcgcttgaacctggggggcagaggttgcagtgagccaagatcttgccattgcactcca<br>gcttggtgacagagcgagactccatctcaaaaaaaaaaaaattctatttatacttgaatactatcaatatattttaaatatatatttacacacacactcg<br>tagaataacatctggagggataagcataaaaatattaacagtgattatttctgagtggtagtttattttaatttttgtgatttccttttttgatgcatgt<br>acatatatatgtatatgtgtatgtattttgtgagtatctgaattttctaatagttgtacatgaagcatttctttctaaaagctt<font color="green"><u>AAAAATAGTTATTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATAGTTATTATG</u></font>acagtaacaatcatttctatagcttttcttagtttactatcagctcaagaaaaaaactaagtctaatagctgggtgtg<br>gtggtgggtgcctgcagtcagttccagttatccaggaggctgaggcaggaggatcacttgagcccaggagtttgaggctgtagtacgatatggtcgtgcc<br>agtgaacagcaactgcactccagcctgggcaacatagtgagatcccatcctgtctcttaaaaaaaaaaaacttggtctacttacactagatgctcatgtg<br>ctgaagataaagtctctgtctacctggccaaatataagtattgacctgctataaaactacggatggcccatttgttttaggcagatgtgcaattcagaat<br>ccaccc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	801	479	NA	intergenic
0	chr8	140475270	140475590	1000734	0	+	pAlu8-140159566;994; RIP_Alu_chr8_140_01	CCACGCTCGAGCGTACCTTCACC	CATCTCTCCACTTTTTTCTCTGTAACC	SINE	Alu	Yg6	ttacccttcctacctgcttgttttagttccttaccaattcttttccaatcttttagatctaaagttccttgttctggaaaccatgggcaaaattgttcta<br>ttatttgaaatagcttgattagattttttgtagatactttaactccccctctttttaaaagaattttaataaagctgagataagaggcatatttactttt<br>aattttacttttagtttgccccattatcaccctagcttcttccgagcgcacaagcttaccgtaaggctgactgtagacgtcctcgggatctcttgtcgac<br>ttgtcctcaatgaccacgctcgagcgtaccttcaccctagagaaaagcctccacgttgggcaccagatgtaggggtgggttgcccctac<font color="green"><u>AAGAAAACCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTA<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACCAT</u></font>aaggagaatacgacttgagtcagctaggcaagatgggggaaaaaatgaatgagataaagtcaaaaaaa<br>cagaacatgcatattaaaaaatcatactagaatctaaaacaaatattttaaaagtgaatgtaaaaatggatagagtcaaataaataatatggataacaga<br>tttgcaaaaccactccaggttacagagaaaaaagtggagagatgaaaacacaaatatccaaattagtatcttaaaactataatgatagacttcaaggaaa<br>ttaaaaatataaaaacatcttaattagaaaatctgaatttaaatatttgtataataacaaattactaaagtaatactagaaaacacagataacctgaata<br>agacagtaaccagaaacaaac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr9	16463295	16463593	1000735	0	-	52451; RIP_Alu_chr9_016_01	NA	NA	SINE	Alu	Ya5	cagcctcaagtagctgggattacaggtgtgcaccaccaagcctggccaatttttgtattttaagtagagacaaggtttcgccatgttggcccaggtggtc<br>tcaaacacctaacctcaagtgatctgcctgccttggcctcccgaagtgctgggattacagacatgagccaccgggcctcccaaagtgctgggattacaga<br>cgtgaaccaccatgcctgaccctatttttgtctttttcagttgtgaattttgtagttggaggaggaattagaaaataatctcctatcattgttaatatgt<br>aaccgtcatttgcaacaaatggaaatttaattctgtttttgtcagtgcggtgagatagcatcaagtatacccttcatttggatagattagtc<font color="green"><u>AAGAATTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATTT</u></font>aatacttgtatgctcacagtggcaaattttcagcatagtcatttttgttaactttccaaaatgttgtcagaacgtgctgtcattcactctcat<br>tcaatctcctgaaagttaactcctgtctcattttctgtgagatgatccatgtttcctgttacacacacagtcagtacactcttagtgtactagtctccct<br>gcacacctttcagaacaacattgctttcagtagtaaaaatggaaagagagaggccagtggagtaatgtgaggaaagaaggaaatgggtgggctgcggggg<br>aaatgatcagttccccagaaatggtcggttctggagaaggaagaggatagttctaaaatttgggcataaaactaggacatcaaacaagcctggatgaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:BNC2:NM:017637:5/7	
0	chr9	18751840	18752116	1000736	0	+	238417;pAlu9-18741739;Ya5ACA1841; RIP_Alu_chr9_018_01	TGGTCAGTGTCTGGAGCAAG	CAGTTATGCCCCATGGTTTT	SINE	Alu	Ya5	caggttccctcaactgtaaaatgaaggtaatcaatagagcttatctcatattgttctggaggcaattaaatgagataatgtgttaaggtgccctctatga<br>tgggaggtctcatcgatttgctcatttaaccaataacattaactatctaaaaggtgttctgatggaccctgcaagtaatacaaaactgactcagatgcgg<br>gccctacatcaggaggtatacactctagcagtgcccttgacaggtagaataactgtaatacaactgagaaaatggtcagtgtctggagcaagtatggata<br>cagtgttttaaatatggattatatttggatatatagaaatgaaagacattttgaagggcaaggaaagggcaaaagatattccaa<font color="green"><u>AGAAATACAACTTGCA<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAA<br>TTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGA<br>GATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATACAACTTGCA</u></font>taaagac<br>acaactagaaaaccatggggcataactggagaataacaaacagattattacagatatggctaagcttagtgtagatgaaaggaggtagtggaaacaggtt<br>ggaaagttagttacatgtcagagcagtaggaaaagattgagtgcatacacttaatattacagtctgatgaaaaacattaaggccaaaaaattttcaacca<br>actttcaggacaaaagctaggtgggactagctactagaggatctacttaccatgttttcttggccaattcctgtttgtaaaatctttgtgcctcagactg<br>taaacagaactttctaaaactgatctttagaagatgcttctgacgtacagcctgagccactgagctttgtccttatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	456	166	NA	intron:ADAMTSL1:NM:001040272:15/29
0	chr9	22999504	22999819	1000737	0	+	401;pAlu9-22989404; RIP_Alu_chr9_022_01	NA	NA	SINE	Alu	Ye5	aactgaaaggcagagaaatgtaaaggagattttcatatcccctaaggtttcaagtttctgtgcttaaggatatagcgagagagcactaccccacagaaat<br>caagaaacgataacaaaaacaatacatagtaccatctctgcagattactaggaagagacttcccaatttattcaatttgtacaattcctttacccacaga<br>ccttgttttcctaaaacagaagcacattacaaactaatcatttaaataagtcactctgatgtcttgctgacacaggagaggatttgtatacattttcaaa<br>ctgttcttttttgtttctgatagggataacataatgtgccagcactgtgtcctgacaaagaaatctaaatccattcacaggcat<font color="green"><u>AAAAAATTTGAATGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAACAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTTGAATGCC</u></font>agatccagaagaggcgcgacagtgtttggtaaatctgtgaatagacaaagatttagattatacaatcc<br>actattcagaactagctacataagttgtggggaacagcacaaaatgaaaatgtggacacctttgttcaaaaatggttaagaatttcaagatgtcaatagg<br>agagcattaaaccaagtgcagagtcctaagcatggagccataagcttgggaagctgcactgccactctccttcccatccattagtggaaaaaccaagtct<br>attttgtctaaacacacggggactgacacagaataggtgctcaacaaatatatgctaaataaataaatatgctgactataatttatactttacctatcac<br>atccaacttactaatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	28584936	28585011	1000738	0	-	15754; RIP_Alu_chr9_028_01	NA	NA	SINE	Alu	Y?	taataatcttccctaataattggtatccatagctctcctctcagcagtcctgggacttgaattataccataccctcagtctaaggagccacagtccaaga<br>aacaacactaaaatgtttccaaattggtcatgctccttagggttgtcagatttatcaaatagaatacaagatgcccagttaaaacagaatgatttccaat<br>tacctgtgaatacatacactgagattttaaaaatgttgtctgggatatacaaataataaaaaacactattgtcatttacatgaaacgaattatgagtatc<br>taaattacgtgtctctttccttgattatacttctgtgatgactcgcctctttttaacagttccatgatttacaaaatttgtttt<font color="green"><u>AAAATCTCTTGCAGTC<br></u></font><font color="red">GTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCTCTTGCAGTC</u></font>acagtcta<br>tattacatttacattgcaacacaactgtacagtagtcacatcagccttatttagttattttgtccattaagcattcattaatgaaaaaatatgttaaact<br>tagtgacaaaataatagcattctcatgaattttaattttctttctgatctctcttcaacagtataaatgatgactctgcatgttctcaagctagtgatta<br>tttaataacaaccatgtaaaaaattgaattattcaagtgataaaatctattataagaattagtcatcgcaggagccttaataattatccatttcaatttg<br>gaatttcttttcctgtttataagtaatagtgtatttatttcgacacagggataatttttttttggtcaattcctta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LINGO2:NM:152570:2/7	
0	chr9	30491299	30491595	1000739	0	-	pAlu9-30481193;3576; RIP_Alu_chr9_030_01	GCCTACTATTAGATAGCAGCTCC	GCTCTACACAGACACCATTGTAG	SINE	Alu	Ya5	agacatatcataatgaaaaaattgagaaaagtgaaaaaattaattttctgcaatgaaactttgatgtagtaatagaacctttatttgcttacttttcttg<br>atatcccaaatgctctacacagacaccattgtagttaagaaaagactctgggtaaactaattttgttatatatgaaaatactgttagttttatttcaaaa<br>attatccaaaaacaaataaatatgaattatgacttgaggtacaagcaatcaagtattttctcctctgtacatgtgtaatattttatttataattttaaaa<br>tagcactttatttgtttcattgtggattgattagttaacatatctcctttgctaggttgtatataactccagcacatactcaattt<font color="green"><u>AAAAAATTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAATTATTTTT</u></font>gtctttttatacaaagcattgattcattaaatgttaatttatgaaacatagcataattttggtaatctcactttgtcatttttaaaatg<br>tccaaatctaagaggacgctccaatattattttctttttacacatttaaatatttaaggtaattattattgcaatattttcaattatacattctcaatac<br>ttcatagtttttcatgcaaatcaagcaattaagatcaattataggagctgctatctaatagtaggctataaaaatgagatgcattaacaatttttttaaa<br>tgaaatgtactcatgatttaatgccatgaaaagtttaattacataactcttattaactttcacaaaacactgtgttcattttacacataaccaacag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr9	32315162	32315380	1000740	0	+	2076; RIP_Alu_chr9_032_01	NA	NA	SINE	Alu	Ya5a2	aatggataaataaaatgtggtacatatacaaaatggagtactattcaccacaaaaaaagaatgagatcctgtcatttgcagcaacatagatggaactaga<br>ggtcattgtgttaagtgaaaaaagccaggcagacaaagacaaacttcacatgttctcacttatttgtgggagctaaaaattaaaacaattgaactcatgg<br>agatagatggtagaaggatggttaccagagactgggaagggtggtgggggtttagtgggggaagtggggatggttagttggtaaaataaataaatatata<br>atagtcacaaagaatgattaagacccagtatttgctagtacaacaggatgactaaagtcaagaataatttaatcatacattttaaaataact<font color="green"><u>AAAAGAAT<br></u></font><font color="red">CCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG<br>CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAT</u></font>ataattagattgtttgtaacacaaaggataaatgcttgatgtgatggataccccatttactataatgtgatta<br>ttacacattgcatgcctgtatcaaaatatctcatgtaacccataaatacatacacctactatgtacccccaaaaaaactaaaatttaaaattgtttaaaa<br>agaaatgctagtgagccatgtagcaagaatgagaaggtgggtggaggagtaagagacagagagaaggagagaagaaaaaaaggaagggttgggggaagaa<br>gggaagaaggaaatattgctttgaatgtgtttaataaaaaggctgcatatcaaaaataatccttgaaaaaagcaacatgacataaaatatgaagtaatag<br>taatctggacctaaagtgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr9	71777942	71778244	1000741	0	-	238617; RIP_Alu_chr9_069_01	NA	NA	SINE	Alu	Ya5	ggctgaggtggatggatggcttgagctcagggatttgagttcagtctgggcaacatggtgaaaccccatctcaattttttttttttttttggagacaggg<br>tctctcactcttttgcccaggctggagtgcactgatacaatctcaggtcactgcaaccattgcctcccaggctcaagtgatcctcccacctcagcctctc<br>aagtaactgggaacataggcgtgcaccaccatgcccagctaatttttgtcttttgggtagagatggggtttcgccatgttacccaggctggtcttgaatt<br>cctgaactgaggcaatccacctgccttggcctcccaaagtgcagggattacaggcctgagccaccgcactcagctaaaaatgttt<font color="green"><u>TAAAATAAAGATACT<br></u></font><font color="red">GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAG<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATA<br>AAA</font><font color="green"><u>TAAAATAAAGATACT</u></font>ttttaaaaaataattatttgcaaaatgctgtgtacgtttttcagaagaaaagggtctggtcttacaattctttttatgttat<br>ttacatatgtttgtacaaacacacatttggatttcagtttttaatataagtgataattgtttattcactcaaactatgcagtaagtagatcaccaaaaag<br>tggtaaagtacaactaaaatgtcaccatccagagccaactactgagcacctttccaggtatctctctgcacagacaagtaggtacatattgtacacaact<br>tagacacctggggtatacacttgggatacaccaaatttgctcttttgcaacctatttctacataagaatagagtttgactatttgtttcatgaactagat<br>ctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TJP2:NM:001170414:2/22	
0	chr9	74269395	74269666	1000742	0	+	15030;Yb8AC825; RIP_Alu_chr9_071_01	GCAGGAAAGTTCTTTGCTCTTT	CTGGGTTAGCCCTTATTCTTTGT	SINE	Alu	Yb8	atacatgtaactggaaaatgagattttttattatagtttttaagttaagaatagaataactaatttattttacttgaaaaaatctttttacagagtttct<br>tcttaaattttcatcttaaattacacctttctaatttaaatgaacagtttttatatactgattgtattaattgaaataagaacaaaatgaccaacaaagt<br>ttatttttttaactaacacacacacacacatacacacaattctctattatgaatattttaacaaatgtagtttcctaaaacaaacatacattgtctcaag<br>tttacaagtcaacattcttgcaatctctactaaacaaacttttacacatggcaggaaagttctttgctctttcaagtaaatagtcttag<font color="green"><u>AAGAGATCATT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATCATT</u></font>tcatgataagtaaagac<br>aaaagaagcatagataaattttataatcatggcaactggaatgtaaatattctctaagcttctgcattatctttttcatctaaacaaagaataagggcta<br>acccagtgtttgggattctcaaaaacactatgctaataacctcattgaagttttttattacgtattactgaaccatgtggcttagagtttcaactataat<br>tttaactgaagctgattctaagtatttgaggtaaataatgttctatgatatagaacattaaagaatctataggcagaatctatggccacatagtagcaat<br>tcatgttaattcttcacagtattccattgtataaagatcctacattctaatctactctctggcaataagatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	456	175	NA	intergenic
0	chr9	78736736	78737038	1000743	0	-	pAlu9-72306749;15602; RIP_Alu_chr9_075_01	NA	NA	SINE	Alu	Ya5	gtagtgaaaaaaaggtcaataataaatctcaatagcgacaaagtttgtttaacacttaacagtactttactcaattgtcattctatcaaacagcaagtga<br>aaatatcattagaaaataacagtctatcaaaagtgtgttcagagataaattcacatctttaaaaagttttattaatataaaaggaaagataaatgaacca<br>tgattcagccaataagagtcataaaagaatgaagaggaaaacaggaaagaaattttaaaaagaaagaaagaaaaacagaaaaaaaattactgataaatct<br>caaaactggacctttgaaaaacagtaataaaaaatttaaccaagaaaataagaagaaaacactaataaattctaaatattaaggcagtcat<font color="green"><u>AAAAACCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCTGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAACCAA</u></font>tacaagagatgtttatagtattagaaaatactgggatttcttctaaaaatggctttgaggccagatggtttccttcaaacatgcgaga<br>actctgatcccaagggtctctggagagaaaatacaaattgcaaaattccataatttattttgtgaatttaacatcatctgataccaaaaacttgcagaga<br>caggccagtttcaaggtcaaaccaacgtgggttaaaagcttgactctccgtttactacccatgttaccttatagatgagaattacatgaaatataccaaa<br>agtatactttagaaaatgctatttatctgctgtaggtacacaactaatgttagctagctgctgtaataatagcatagaacacacatatatacacacacat<br>tag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PCSK5:NM:006200:9/21	
0	chr9	79124520	79124828	1000744	0	-	1639; RIP_Alu_chr9_076_01	GTCTCAAACTCCTGAGCTCAAGCG	CAATATGGTCTCTCAAGTATCAAGG	SINE	Alu	Yb8	gggctggggagcataagactccctaaggcaaaccatatgtggaaaaagctccaaatacatatttggcaacaattttatggagctggaaggagtcattctc<br>aaaatatgaagatgtgacttcaggaaattctgaatgctcctttctgttcaatagttttcataaatgagatcacattatatgtagtcttatttctcaatat<br>ggtctctcaagtatcaaggatattttaaaaaaccaaacaccaaaactggtaatttgatacagaaattttcttttaatttgaatcatctttattgaattat<br>aatttttcatattagccatttccatttcttattgtacttctatgaattgttacatcctttgttcatttttctcttggagtcttcatgtttaaa<font color="green"><u>AACTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAC</font><font color="green"><u>AACTATG</u></font>ttagtatgagggagttgtggggagtgactataaagggtacaaggtttcttcttggggtgatgaagaggttctaaaattgattat<br>gggccaggcgtggtggctcatgcttgtaatcccagcactttgggaggctgaggtgggagaatcgcttgagctcaggagtttgagaccagcctgggctaca<br>tagtgagaacctgtctccatatttaaaatacaaataaaaataaaatggattgtggtaatggttataataaaaaccacttagatatacactttaaatgggt<br>aaactgtataagtgaattatctcaatataactggttttaaatattagcataaatcatttccatattaaggtattaagcctccctcttccaaaatctgtag<br>gcaaatgtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr9	85033860	85034187	1000745	0	+	21284;pAlu9-78588785; RIP_Alu_chr9_082_01	NA	NA	SINE	Alu	Yb8	aagttacacaataatatttcctgcagcttaaaccacagaagcactcacccttgagtgctgtaataggtttctagaatttatttaaactataaaaaaacac<br>aggacgaatggttgttttggctcacgtaatggatcagatatctaggaatgccaaaagcatatttatttactcacaggtagcaaaaacatcatataattct<br>ttttgtggctgtccaggcaatgtaaattttttttttctgttccagtaaagtgtacattgattagaaattattgttgtaaaaagaccaccactcaaacaga<br>gggtctgcactaggcaagatatatgaaacccaaagtgcctgttagggtgctgtgaaaatgtacgccttccttttatttattttttt<font color="green"><u>AAAGATTTGTTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATTTGTTCCA</u></font>tgcaggaatagaagccttttttgtgtgtggtcatattgctgagaatcatctggtaaat<br>gagccaagaagagagagcaagcaaataatcttaatcacttgggaatataagaatcaaacatcacattgtgtgcagtaatgaggagaatacattttagaca<br>ttggtgcaaaaatctaacttctatctttttgctatagcttactcaatttgagctatagtatggattgggattaaaagctctaagttaaatggtggtgtaa<br>ttatgtgttaacatttcttatatataagtttatttacatagcatatttggaatggctctatttttaatttagtattgaatcgctgcacatttgcaaactg<br>cttcagatgcactttctgaaaaggtgct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	96730359	96730597	1000746	0	-	52453; RIP_Alu_chr9_093_01	NA	NA	SINE	Alu	Yc1	cagtggtagccagcctggattcactgtgctggtgcagggctcccccgcctcattcgttcagtttatttagcagatgactcaccagcatgtgctgggggcc<br>tgggctggtctggggctgcaggaatgtgcatcagctggtcctcgcctcacgagaactccaggacgcaagtgctagtggtatcctcgtttctcagtgggag<br>aaactgaggcacacagaaggaatgtgcctctgtcactgagcgggacaaggtttgaaccggacactgtgccacctcgcttgcaccttcatcttcatgttct<br>tgctgtttcctcatgcataactggtgctccctttatctgattgttctctttaaatgacaatgttgttcttactgaataaatgtgttt<font color="green"><u>AAAAGTGATCTGG<br></u></font><font color="red">TCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGT<br>AGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGC<br>GACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTGATCTGG</u></font>atcttagttttaaaagctgtgtgcagtggctcacgcctgtaatcccag<br>cactttgagaggaccaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactagaaatacaaaaaa<br>ttagccaggcatggtggcaggtgcctgtaatcccagctactcgggggactgaggcaggagaatcacttgagcctgggaggcagaggttgcagtgaaccaa<br>gatcgctccactgcactccagcctgggcgacaagagcaaaactccgtctcagaaaaaacaaacaaacacaaacaaacaaacaaaataagtaaataaataa<br>aaataaaagctcagcatcacctagcaattgtggacgtag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr9	98266015	98266344	1000747	0	+	12509;pAlu9-91565050; RIP_Alu_chr9_095_01	NA	NA	SINE	Alu	Yb8	agcagggaaatcttactcctgaatgcaaatgctcacactacttactgctgacgtgaacactcagctcactctgtcacaaacaagatctctacacaatcac<br>ttctgctttgaaaatgaaattaaatctatatggctactgttgtatagtcacctctctagttgggtctatctgcatttatgaaactgtcgcttcttctcta<br>gggggagaatctagcacagaatgaatgaatgaatgaatgaatgagagatcaaggacagggcaacagaacaagtgacttatgtcattagtaggcaaagtag<br>acctggagacaaacagacaacccatagtttcccatctgtaaaatgggacaatcctcatcataaagacattacatccactatcatgttataaaaacaaaa<font color="green"><u>A<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A</u></font>agataataatagctattttattgaatcgtaaggcatgcgataatatataacaaatgcctggtacatggc<br>agttgctcaacaagtgacagtattagtactgagtaaataacatttggcccaagaccagtgagtcatgctgaaactgccaaaagtaagcaaagtgagtgtg<br>cccctcagaagtgtcctcatccagtccattgaaaaagaaaaactttactccctctcactacacaactggcagctcccataaaactgctaggaagcacact<br>gcatctccttccaggacttgaaatgggtcgtgttatgcagaaagcaagttatttccagaaatatgcaatgttaagaaaataaatcacattctatctcctt<br>caacatgtcaaaggtccactgaaaactctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTCH1:NM:000264:2/24	
0	chr9	100761076	100761388	1000748	0	-	807; RIP_Alu_chr9_097_01	NA	NA	SINE	Alu	Ya5	atcttggcgtttccatgcaaaactctaggcaactgtaatccagctagaacacaagatcatgaattacacgacccaaagcttaaaatagagctgtctttgt<br>tccatctacaattcaggtatgccacacaacataaatagccttttctgttaaagtgtaaaagtacataatggcttggccagtctgaagaaaaaaattgtta<br>agaacatgtttaaggctatatagtcaatacatgaatttcaaaagtggatccaaaacaaaatacccccaaaaattctcttctgaaggatgccaccacaata<br>tcaggcagggagagagcaaagccacagaaatacatctaattagagaggccctgatctttaaaattgggacttacataaaaagt<font color="green"><u>AAAAAGCCACCACTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCCACCACTTTC</u></font>tcaaccaattattattgccagtaatttcccccactataaagaaatatgaaaatgaaaatgaccagtaagt<br>tccagtttccaaattctcagttacttaccaaaggttccaaggtgctgatatctttcagtttatttccacttaagtttagatgtgtgagatttggaagttt<br>ttcagctaacatgtccagacctccaaagattctattttcactgagttcaagctgcaagagaaaatggacacaacacaaacacaaatacacacagagaaac<br>agaaatcatttaaggtattgtaagtaacaaatacagttctcaaagatttatcaagatcaaatgatccctatttctattagggcatgcatgttcattttgt<br>ttaaatccaaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ANP32B:NM:006401:3/7	
0	chr9	101209347	101209644	1000749	0	-	55150; RIP_Alu_chr9_098_01	NA	NA	SINE	Alu	Ya4	ttggctggaattccaagtactctaagtaaggtcaaactaggtagccagagaaaaccaacaggttcctcgttccaggggaatttgcaatgttggctcaaac<br>ccacctttatttcatccccactgttgcctcgccctactgtgatcctggagtttgtgcacttggtttttttaagtcaaaatataattttacacacacacac<br>acacacacacacacacacacacacatacatactagttacatatcatcttgttagagttgtcccatctctcctgcctgtttgatcttttggggtcctggtt<br>ttactttccaatgtagagactaaacttcaggcctcccaccagccagacattggtgtcttatatttgatatcatcatttactcat<font color="green"><u>AGAAGTCTTTTTTAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AG<br>AAGTCTTTTTTAGG</u></font>ttgaatctgggaaagaaaaagacaagaaacagggcaccgggaactccatccagaaataaggaaaactctacccagtcaagatttga<br>caccacttggggctggtcattcttccagttgtgactctatcccccagattatcctgattgtgcctgtttcttgactttgtgctcaaggctgtcactggag<br>aacttgttagaagctctgaaatagtccaaatgtggtataacaactgggagccctagaacatggggcttgttccagtgaccccatgctagcgtccaatgcc<br>accccacggtttcctattctgaggtccctttttcatgttcctttcttgtctgctgcccgggagcaacagaaaacccatccagaactttctctgtacct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GABBR2:NM:005458:7/19	
0	chr9	118109657	118109987	1000750	0	-	238848; RIP_Alu_chr9_115_01	NA	NA	SINE	Alu	Yi6	aggatgtatggaaatgcctggatgtccaggcagaagtttgctgcagaagcagggagctcatggagaacctctgctagggcagtgcggaagggaagtgtgg<br>ggttggagcccccacacagagtccctactggggcaccacctagtggagccttgaggagaaggtcaccatcctccagaccccagaatggcagatccactga<br>cagcttgcaccgtttgcctggaaaagccacagacactcaacaccagcccatgaaagcagctgggagggaggctgtaccctgaaaagccacaggggcagag<br>ctgcccaagaccatgggagcctacctgttgcatcagtgtgacctggatgtgagacatggagctaaaagagatcatttgggagcttt<font color="green"><u>AAGATTTGATTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTGATTGCC</u></font>ctgctggttttcaaacttgcatggggccagtagcctctttgttttggccaatttt<br>ccccatttggaatggctgtatttacccaatgcctgtacccccattgcatctaggaagtaactaacttgcttttgattttacgggctcataggccaaagag<br>acttgccttgtcgtagataagactttggactgtggacttttgagttaatgctgaaatgagttaagactttgagggactgttgggaaggcataattggttt<br>tgaaatctgaagacatgatatttgggaggtgtcaggggagaatgatatggtttggctgtatgtccccacccaaatctcatcttgtagctcacataattct<br>catgtgttgtgggagggacccagtgaaagat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DEC1:NM:017418:4/8	
0	chr9	122531846	122532152	1000751	0	+	20034; RIP_Alu_chr9_119_01	NA	NA	SINE	Alu	Ya5	actactcatttctctcataattcactgatggttgaagatctgggctccatacaatcattctagtacttaagccccttctatttaatgacactaccatatt<br>ccactgtcttaaagtccccttctgcatcatccgcaaccagacaatagacaagggaacaaatttaatgaagctttgcaaagaatgtttaagggtcctggta<br>tgtatagcaaatactacttgcacttacattcccttagctaaaattaaatctcatgaccccacttaaatgcagaggagactgggaaatgtagtctctggaa<br>taaaatggaatggagtgcagtgaaccatcatattttttctgtcacagtagatatttgctgtctgcaagagagtagtaaagggaagggat<font color="green"><u>AAGAAAATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAAATTGC</u></font>aaggaaaaggacaaacttgagcaaaagcataattgtctcaaaatactagtcaaatttggggaagcacaaacaatttgatctg<br>acagatgctcaggttggcagtctcagtaataatttgaggctcacatcatccagggacttggaaaatgcactaaggagtttggagtttggactttattgta<br>cagctaaaggggagctgttgaacgatttttaaccagtagaaaatatgattatatttggaatttagaaaaatcattctctgagccatgtagatggtggttg<br>aagaaagcaagacaagaggcaaagagaacaggtagggtagaattgaatcatagatgtaagatgtcagactaaggatggttgcaatgtggtcagaaataag<br>aagatag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chrX	22855565	22855837	1000752	0	-	Ya5DP13;13610; RIP_Alu_chrX_022_01	NA	NA	SINE	Alu	Ya5a2	taatgcagcacatgaatctactgagttgttttagaattgaattaacctataggtgaagtgcctgacacttggtggatgctcaaaaagtaacaatcctcct<br>attcctctcttggtttctatgctgaacatccttcttcatatctatgcttacttcctcatcatccttctggctgattcctttacttcctctttttgcctaa<br>atatgggtgtcaagtcggtactgttgttggccctctacttgagcgtgtccctctcacagttcatgtccgtttttatagcattctttctcactgtatacct<br>ctatagagccaagcctgatactctgccaaccccacatgtccaaatgcctagtggaagctccgtttggatgccccaccccacttt<font color="green"><u>AAAATCAGTATATCCC<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAATCAGTATATCCC</u></font>aagctaactat<br>tcaccgatctccttgtcacattccccataccatcccaattatttctttgactttaatttgtcccttgttgttactactaaaaaactttgaatatgatttg<br>atttatcccccaccttccaatccatatccagtggtcagcctcatgctttttgatattctcatgagatggagtatattataggaataagcatagatatctt<br>ttgtcttaaagctctgagtccaacacttagttacatagttatattggccttaggaaaaataaatgacctctgaacatcacttttctcatctaggaaaaca<br>gaataatcatacctctttcacaagtttcttgttggagatgtgaatgttctttctaaacaaacaaatggttata	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chrX	24292716	24293032	1000753	0	+	pAluX-23494670;13459; RIP_Alu_chrX_024_01	NA	NA	SINE	Alu	Yc1	tgtagtataaggatgcgattattactatattctgtccttacccttagagaagtaacacctcgtggcacttgactgtgggttctctggggtgagaaaccat<br>gtgctatttattttaatctggcacttgacacattaatgcttgttggatggacaaacaacagttaagagatgtcgaaagtagacaccatgtggctcttctg<br>ggcaggacctcatggaatgcccacttggagatggggacgctgatgggtccagattctgaccttgttttaaagtttcagaatatggtgatgcaactgtaga<br>aagctgatttctgctagctcatgagagattgttttgtattttatcacaacttcattgagatataattcatataatttactgactt<font color="green"><u>AAGATGTAAAATTCA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA<br>AAAGAAAAAAAAAAAAA</font><font color="green"><u>AAGATGTAAAATTCA</u></font>ataatttttagtatattcagacttgtacaaccaccaccacagtcaattttagaatacttttgtcctct<br>attaaaagaaaccggtaccttttggcagtcactccccagtctcacctcccccagcccctggcaaccactaacgtgcgacgttctgtctctctagatttgc<br>ccattctgggccaggcgtggtgactcacgcctgtaatcccagcactttggaaggtcgaggtgggtcgatcacctgaggtcaggagtttgagaccagcctg<br>gccaacatggagaaaacttgtttctactaaaaaatacaaaagttagccaagcatggtggtgcatgcctgtagtcccagctacttgggaagctgaggcagg<br>agaattgcttgaacctg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	33208594	33208903	1000754	0	-	Yb8DP2;238887; RIP_Alu_chrX_032_01	NA	NA	SINE	Alu	Yb8	ttagggcattaggaatgaaaaagacaaaatgcaaacaaaagatatttagatatttaattagtaaaacttatttgcgcgggtaatgaggagagagacaaaa<br>atagtagagagcaaatcatcaatactgacttcctgatttcttactagggcagtataggtgtacactatatatatatatataatattatatattatatata<br>tatatataatattatatattatatatatatataatattatatattatatatatatataatattatatatataatattatatattatataatatataatat<br>tatatattatatatatatatataatattatatattatatattagtactacttccttttataaattggacagaaagcttatatgtat<font color="green"><u>AGAAAGAAAGATCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAAGAAAGATCA</u></font>atattttttcaaatgtccagccaattgtttaagtaagttaaggtatgtaatctaaacttataatttaagtttaaag<br>aaaaacattagaccaaatatttagccattttgatgtagccaagtttatgcttcaggagagttgcatagttatgaattgagctcacagaaatacaaataca<br>cacgtcatcatagtgtgatatccagcatagatggggggcagttatcataaatcctgtcctaggctgggtttggaatgtgagacagattttataataataa<br>tatttcatctacataaaacagtccatttcctggactataaggatcatgataccatttgtttatcatggctacaaacagaacaggaagtagtatccttcaa<br>cagagaagat	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DMD:NM:004006:1/79	
0	chrX	33302852	33302853	1000755	0	+	248;1104685752052; RIP_Alu_chrX_033_01	NA;TCTCCAGTTACAGGCCCTTTT	NA;ACCCCTCACTGCATTTAAACC	SINE	Alu	Yb8	tttctcaacaattagtgttttttaacaaaaggacataacagtgcatagccaaaaatttattaatttttggaacttttagtttccaaattcttcttcatta<br>aacacaagataaaaatacttaactttttaagacaggtgaatagaaggaaatttttgctgagcctcttctactttttatgttaaatattttattctatgct<br>ttttatcatggcttacacaaaccttcataatgttgctgcaatatatttactgactatcaatgctctcttcaaatttggtataggtatatttttcagcctt<br>tcccccttcttgtctccagttacaggcccttttatgggcctataacgttggttttctatctcaattcaaaattcaaaagaaaagactttaa<font color="green"><u>AAAAATCAT<br></u></font><font color="red">CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACC<br>CCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATCAT</u></font>tgccctaatgcttaatttagagcgtagcacatagatattcccaatatgttctcattaaaggtattgatctttgatttttaaaagtaagtaac<br>aacaaaactgtgagagaggagcagctttttcctttgagaactgtggtttaaatgcagtgaggggtattaatgactacataaatgacttcctatttcagtg<br>aagtgtttaataaggtctttaaaacagtacttcatagcatcctgctcttcaaagcaacatctgtggctctttttggttccaataagtgataaataacaac<br>aggattttggttcacgtaaggacctaaaacaggagagttggttaagctattcatacatgttgctttgtaattgggctgatgtaattttattttattgtg	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;60	NA;563	NA;254	NA;NA	intron:DMD:NM:000109:1/79
0	chrX	71123232	71123537	1000756	0	-	pAluX-69356353;238289; RIP_Alu_chrX_070_01	NA	NA	SINE	Alu	Ya4	tggcacgtaggaggcactcaataaatgttagctcctattattagtagtatagatagtagtttcctatttttaaaaaaggaagggactttttttctccctt<br>ctccatcctgggtcaacatagcctcaagtccttacttcagagtttctgaagaatttattaaaatcaggaatagtctagatcttgtctcttgccaaattag<br>cttttaatttgtcataggctttctgacattcaggttgtctcaacttatttatcaaacctttctcagccaaattagtaagatttattaggttaaactgcat<br>tacaaacttgtggcaataacaagtgctggtccttatttgcttctttatgtctgggttgtcccacttcccaatcatcttagctatatctt<font color="green"><u>AAATAAGTAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAATAAGTAGG</u></font>attctattggttactctctagcccagagtcatcaccttggacagtctaaatggatgttcactcaactccttagtaagcccagt<br>ttctggagttacccagggaacagtcactaaatatcttagatgagtttacatatttacattaaaaatgactatctcagggaggagccaagatagctgaata<br>ggaacagctctggtctacagctcccagcatgagcgacgcagaagatgggtgatttctgcatttccaactgaggtaccgggttcatctcactggggtgtgc<br>cagacagtgggtgcaggacagtgggtgcagcacacaatgcacaagccaaagcagtgcgaggcattgcctcacccgggaagtgcaaggggtcagggaattc<br>cctttc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	106661474	106661475	1000757	0	+	31023; RIP_Alu_chrX_106_01	NA	NA	SINE	Alu	Ya4	accaaaaacagctttcttgggcaacaccggccagagacactattccacctccctgctgaggtccagcttgaactttattcatttcaaaaccaaaccattc<br>agccagaccctcaaaccactgaagacgctcagtcagtcaaaatgggtcagaatcaagtgcaaacctctctgaagtgcttatcactctccagcatctccta<br>aatcttgaaatgatcctaggcctttcttaagcctcccttccacctgctggtcagatagaccctgtgttgtaggactcttccagccttggaaagtggtttc<br>cagaaaagtttgcttgaagtctctctaatacccaagaaagacatggaagccccttgaggtaagtgctgttcttcactgattgccctgca<font color="green"><u>AAAGCAGTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AAAGCAGTGTT</u></font>a<br>cttcaccccttgctgcctttatccacaattcattagtttccactgatgaaaacaatcaggttggaatagatgaatacagccatgtgtatgcattagcttg<br>gtccacttcccagtatgtagactatcatatgataaagcttccatgaatacattgcattgcaaaaacaggaactgcatacaaattgaccttttatcatctt<br>aaaaggtcttccctgaggactttctaagcataaattcagtggaggaagtcacaaaggaaaaatatacatacatgtaacaaagttgaaatcaaaaatttat<br>gtgtattaaaaaaacagacattgctggcaggtaaataaattggtacaactttcatggagggaaatctggtatatgtattaaaagcctt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chrX	116454362	116454664	1000758	0	+	31314; RIP_Alu_chrX_116_01	GCACCACTTGTTGATTTTACCTATTC	CATAGAGGGTGGAGTAAAGCAGCTG	SINE	Alu	Y	cacctggaatggatgacgagacccacttaaaattattctatacaggcaattctcttaacagtgccaaagcacagaattgtgatgccttagtaattgaaaa<br>attgcctggtgagagactttcaaaagtctacatctgctgaggttttcatctgtgagaaggaaaatatcttcattactaaataaacattgaagcaaaactg<br>agaggcaaaataatatatgggctttcaggttataagtcatcagttctgattgttcaatgcaccacttgttgattttacctattcataaaagaggtgcatt<br>aaaacattccctgagtactttacaacagtaattctcaaaacgtgatctctggaccaccagcagcagctaatcctgggaacttgt<font color="green"><u>AGAAATGCAAATTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG<br>AAA</font><font color="green"><u>AGAAATGCAAATTCTG</u></font>aaaccccacctcagactttctgaatcagaagccctgcaggtggggcccagcaagttgtgctttactaaacactccaggtga<br>tttttttcagctgctttactccaccctctatgaacacagggactctccaaggtgttcaccatcataactgttgaaactagcccatttctttttaaaaaat<br>tttttaccattaatttttgtgggtacatagtaggtgcatatatgtacagagtacatgagatactttgatacaggcatgcagtatttaataatcacatcaa<br>ggtaaatggggtatccattatctcaagcatttatactttgtgttacaaacaatccagttatactgttatagtttaaaatgtacaattaaattattactga<br>cca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	4904724	4905022	1000759	0	-	Ya5DP4; RIP_Alu_chrX_004_01	AACACCTCTGATGTAGCTTATG	CTAGGCCACCATTAAGCCAA	SINE	Alu	Yb8	cattgtacccaataggcaggttttcatccctcatccccatcccacccttcctgcttctgagtctccaatgtccattatacaattctgtaggcctctgtat<br>acccatagcttagttcccgcctccttttatgccttttgtataataacaatcaattgcagattctacatttgctgataattgaaataactctctttagctc<br>tatttacaacacctctgatgtagcttatgtttttatttggaattctacaatactgtcatcatttttaaaaactagattgaaaatggattattcactaaaa<br>catcatttttagtgagaaaaatgtattccataaccttaccattttctaaaaaatacacaaagtttgatgtcaatgaactccctt<font color="green"><u>AAAAATGCCCCACCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATGCCCCACCAA</u></font>tagtacccattattaataacctgatgtgcaacttcgatgtgctttttaaaatgcgtataaccaatggacacacacacacacacac<br>aaacacacaaacacatgcattcctactattttattattggcttaatggtggcctagtaacaatcaactgtagagtttcttactatgaaatgttcctgcta<br>tacaccttttaatgcacacatgtaattatttttataaaatttatataaagtatatcagtggtgatctatttgacaattcttaatataatacatatcacca<br>aattattttctatgaaatttgcctcaatttacagtctttccagcaataaatgagaagggtgagaaggaagggagggaggaaaggaaggaaataaggaag	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	11096410	11096731	1000760	0	+	Ya5491; RIP_Alu_chrX_010_01	ACATGAATGTGCCATTGGTT	CAAGAAGGCAGCTGTCCTAGA	SINE	Alu	Yb8	ccctgggggctgacctaaatggactttgtgaatgagccttccaatggggagtctcaggatagtatcagagaaagtgaagagattcagtttgaagtaggaa<br>ttcccccagtgttgtagctgcaaagtgatcttggtcaggttctgttagctgaaggtcacagcctagtcaggtagccctcttcactcagctctctttgtgt<br>ctgggtcctggaagctgatctcttccctccacccttctggcatgggatgccaacagtgtccactcactagcttacaggtagcgtacctacacttgaggtt<br>ttcacacctttgtaactagaccctttactaaagtcttttcagattactcaacatgaatgtgccattggttatacaagcagttt<font color="green"><u>AAAAACTTCTAACTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACTTCTAACTCAT</u></font>accgttgtgagatggatttgtactctctaggacagctgccttcttgaggcaggtatgcaag<br>ctttcacggggtccctttgggccaccctgaccacaacacctgtaacgtgacatggccttttgtctcactcactgttcccagtcccctcttagcatctgtc<br>ccagcattgcacacaattgcctcctaatgctgaggtccccttgcctagggtgatggacattcggatatgtcatcttgatcccttttcaaggaaagccttg<br>ttgtgctgagagtgctgcaggcagacagctctcagctggcagcaacttggcagcagaaggctgccacggccaaggtcacatccttcccagggtggcctat<br>acccaatggccactggtcaaag	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	5570351	5570680	1000761	0	+	Ya5DP3; RIP_Alu_chrX_005_01	ATCTTGAGAATCTCTACCAC	TCCTCTGGATTTCAGGGTTG	SINE	Alu	Yb8	tcatgatataattctgttattgttgtttgcctcttattacccactagttttgtgatgtatttttacttaatctgcttatttataaacattttacctgtag<br>cactagaataaataggttctgccacattagtaaatttccagatataattttaaataggaattttagttttagaagaaaaacaaaaccaaaataatgctaa<br>cctgtctttttttcagaacggtgtatgtacacattttcaagaattagtaaaaagtcagtttgcctctcaaataccacaagtacacatctaaatttatctt<br>gagaatctctaccactatttttgtttaaatttaattaaatcataaagagcactgtttgcatgaatctttgtatgaaactgctctac<font color="green"><u>AATACCACCGAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA<br>ATAAAATAAAAAATAAAAAATAAAATAAAA</font><font color="green"><u>AATACCACCGAAGA</u></font>gaaattttaaagtaagtacaaccctgaaatccagaggaaaaaatcatttggcttta<br>aagcaaaacacttttatttaagctgacaaaacacacacatacacacacacacacacaaaatgtcagtgataactgtgattgaagccactaatattttaga<br>aaaccaaattccttcatctttcaaaactattggtttcaaagagatccgcatacagagagttatacaactgcgggctttgagtttggctgtgagctcttga<br>aactgttcatagggtttctaaaactgtgacgatcttcctgtcttctctttttcttttatatcctgtttctaatttgtttgatggatctttttgaccaaac<br>cttcaaaatatatccagaggcagatactac	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	129539811	129540128	1000762	0	-	Ya5DP71; RIP_Alu_chrX_129_01	CACAACAAAGTACTGCAAAGAGT	CTTTGTTTTCTGATTTTGGAAGG	SINE	Alu	Yb8	actacaggcacccaccaccacacctggctactttttgtattttagtagagatggggtttcaccatatggcccaggctggtctcaaactcctgagctcagg<br>caatccacctgcctcggcctcccaatgtgctaggattacaggcgtgagccaccgtgcctggccccaagcattttggataagggatattcaacctgtaata<br>caatacacaacaaagtactgcaaagagttaatatccttcatacatgaagggctcatgtaaaatcaacaagaaaataaggaaaatacttgtagaagaaagt<br>tggcaaaggatatgaatagacaatttacaaagaaaaataatgggctgcaaatctataaacagatgttcaacctcactgatgatgaaat<font color="green"><u>AAAGGCAAAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGGCAAAGCA</u></font>aagtaataatgagaagccctttggcaaatattttttaaaatagtcactgttaatcaggattcagaaaaat<br>gggcattctaatgagtgtggaaattggtacaaccttttggagagcaatttggcaatgtttataaaacatctttaaaatgctaacatattgatccatattc<br>ctctttcactaaagagaccatgagggatgcatacaaaaatttatatactataatgtacattgcagtataattcataatagcaaaccattggaaataatgt<br>ccaacatttttttaaaaatgataaagagatatgccaaaacattaaggttttccttaagagtatgttctattttcttctttatactttattttgccaaatg<br>ttctataatgactatgta	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:RBMX2:NM:016024:3/6
0	chrX	114670506	114670787	1000763	0	+	Ya5DP62;Yb8NBC102;Ya5NBC98; RIP_Alu_chrX_114_01	TATAGCTAGTAAATGGTAGAGCCAGGA	CTGTCTAAGATAGTGATTGGACCTACTATG	SINE	Alu	Yb8	tttctgtgatatctcaagcccaagtcctgctagttatcttctagatgaggcccaccgctagtcttgtctgtattgagtataaattagctgttaactatat<br>aaaatccaaattcagtaatgccagtggtatccagttactaacatctctcacctcccttttaaaagcattgttgttacacccaataatagtaataataata<br>agaggtatcatatactgagtgcctgccatgtgctgcaagctttatagatgctacataacttaatccctcaacaactctgtggggtaaatattattatata<br>cattttgcaaatgaggttgctgaggctcaggaagaatgaatgcaatgcctaaggtaatatagctagtaaatggtagagccaggattt<font color="green"><u>AAAACTGTGCCTG<br></u></font><font color="red">GTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTCTCT<br>ACTAAAAAATACAAAAAATTATCCGGGCGTAGTGGCGAGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTGTGCCTG</u></font>agcca<br>gaagcttactatatactgtgctgctggtctccctagataggttgcttcctcaaaaatgtggtggcttagacctaagccttgggaccatcttttgaaggtg<br>tgtctcttgaaaacttgagagttttggcctccatagtaggtccaatcactatcttagacagcagcaaggcttcattttccctgatcttttctgtggtctt<br>aatttaaatttccctctgttctaataagactttacttacccttcctatatctaggacaaatgttctatcttttgagaaattgatcttagctactatctga<br>ccaggatcagaaaagtctgtctcttctcatttgattacacagcaccctttgctctagtgcttacttcctagcaatcctgctg	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	138941979	138942285	1000764	0	+	Ya5DP77; RIP_Alu_chrX_138_01	GAAGGATGATCTCTCCTTAC	TGCAAGGAGAGTTGGCATAA	SINE	Alu	Yb8	tatacatgtattgaaatatcactctataccccataaatacattatgtgtcaattaaaagttgttataaaaaaattaaatggaactttccatcaggattag<br>atttacccatgtgttatgtcaaattcaaacaaaaaagagctaagtattcctacaactagacaaatattgcaaccttaatgtgttaccagaaggcagacat<br>attcaaccctcacgtaaacagtaaaaaagagaaaacctttatgaaacggaatgaaggatgatctctccttacaaacacaattttgcataatgcatttgtg<br>tctagttacatggaaaatggaaccaattgtttaaagccagaagggtatataaatgccaattttcaacaatatatatggcacaaat<font color="green"><u>GAAAAGAAAGTGCTT<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAAAAGAAAGTGCTT</u></font>aacaaaagaaaatggaaaaggcttttttaaaacagaatagagttcattagacttttcatgactataattagaaaagat<br>atttctatgttgctataggtagagagatgcagcaagagtaaaactgcaccatttatgccaactctccttgcatagtgactgcaacttaccaatgaattat<br>ttccaatctaatttaccatttgaggacttgaaatagaaaatttaaaaaaacagatatacaggttttaagagataggagaaaagaatacccttgaagaaaa<br>gcacggatatctaattttacaaagcagaatattttcaaatgcctgtttctgggtctcatatatcctgtacctcatttgaggttcgaaatgtgttacttca<br>aaataat	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	119643326	119643624	1000765	0	+	Ya5NBC37; RIP_Alu_chrX_119_01	GCTTGAGGTTTTCATACTACTCTTATCTTT	ACTGTATAAGCATTTTCCTCTTTATCTTTC	SINE	Alu	Yb8	gcgagactctgtctcaaaaaaataaaataaaataaaaagtacattttaatgacgtgctttagaacaataaattagaaattaaattagcagaatgttctag<br>tgtatactagagcctgatatgcccaaaatactcattcctagatgacagaatctagtgatctgttttaggtaggaattatatatactggtttgaaataatc<br>ttttcttgttccttttaattgcaaaggaagtgactctccatttattagttcctacacgagagtagggtgaaaaggctaatagaggcctcatgcattcaaa<br>gaggcttgaggttttcatactactcttatctttggttaaaacatttgacctgtttatatctaatttcctcttaaacaatcacatgc<font color="green"><u>AAAACCATATTAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAACCATATTAAG</u></font>taggatacttgaaattcctgaacattatataaattatgttaaaaatttaatatgtttgaaagataaagaggaaaatgcttatacagt<br>tatctttctgcctcataatccttaactcaaagaggaattagaaataaacctttgaaagatgctaattccatagtctgaattgctgcttgtgttttaggac<br>agaagtctaattcattatgtaggcctgattctaagaaaatttgtctttgcttctcacttgtgttatcttttaaaaatccagcaaattccatactgccctt<br>ttaggtataatgttaaccattacaaataattttttttttaataagaagtctcacactgtcacccaagctggaatgcagtggcatgatctcagcttactg	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	105191173	105191459	1000766	0	+	Ya5DP57; RIP_Alu_chrX_104_01	TTTTGTGAAATACGGTGCAA	TTGTATGGTGTGTGTGAGGGA	SINE	Alu	Yb8	agtgccacattactatctagccattatcaattggaatgtattcattcatagctccttttagatgggatatgtgctctacattctctacccatttatgttt<br>atatatttataataactgaccataaagtgtatttgattttgcagtacttgctttagtttttctgcacttcacaatgcattaacaaatttttaaaaaatac<br>aacaccagtattgcagcattattatgtgtattcctattctttattatattacctcaacagtgacataacagcaaattatcataaaatgttctcttatctg<br>gttaattatagttagaatttctgatcaaaagattcagcattttaaaagcagatactcctcaactcttaaatgcttatattttgt<font color="green"><u>GAAATACGGTGCAACA<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTCCTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT<br>TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAA</font><font color="green"><u>GAAATACGGTGCA<br>ACA</u></font>tctaaaatatagattgtcataaaaatattatacacatcatttacataaagagtttgaacataatgtaatatccctcacacacaccatacaaaatata<br>attctactgtgtctcaaatttgatgttggcaatgatgtttgtcctattgaaatttttatttaaaaggaaggcctaaaccaacagttctctgcttcactat<br>atttaaattcccaatttttagacaaccaaagttttagcagtttagcattatacaaaaagtccaggagaaaactttgatgtattttcaaattactacagtt<br>gtgtgatattttgaacagctctcagaattgtctcatatgtctctaacaaattacataaaccaattgtcaggacattagtggggacaa	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:NRK:NM:198465:26/29
0	chrX	127745091	127745396	1000767	0	-	Yb8DP49; RIP_Alu_chrX_127_01	GACTAGGGGTTTGTGCCAGA	TCCCCCATTTCTGTTGTTGT	SINE	Alu	Yb8	tgcaagtgaatctgaaataggaccaagcttatgtgaaggcacaatgaaaagactactatgagagttagggtcaatctcaaaatctcactctcattttcct<br>tgccaataagtgtgtaattccccactattagtcactaagtagagccaaggcattgaaactaagttcacagaaattgctttttaaagaaagaggatttgca<br>atagggcttcaaagttaaacagaattgcctgttttaatgagaaatgaggtaacgaagtttttgaaaggcagagtaatttaatgaaaatggaagtctagga<br>catgttagatagtcgatgtaacacacgatgttcttgactaggggtttgtgccagagaagcatggtgaaatggtaaagaacttgattgaaagttag<font color="green"><u>GAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>GAAAA</u></font>gtagatgagagggaagagtcaaagctgtcttaaaagtgtccgatctgattaggcaaatgatattgacaacaacagaaatgggggaatag<br>agagaaaactaagtgaagaggatgaattgtcagtgaaatggaagaacaatgaagatgatacaatactctgttgggacatgaacatttttagaagagagtg<br>gacaaccatgctgagattattgtaaactgagacaagcttaaacaaaaggatgcagtatttagacggtgaagtcattaaaaacatataaacacatgtagac<br>atatatgtaccaggtattttcttctccattatgtccaatattatctctggatgaatggaggactcaagacatcatgatccacataggaactctttggtat<br>accttt	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	143843289	143843581	1000768	0	+	Yb8NBC578; RIP_Alu_chrX_143_01	TTTTTGCAGATGCTTCCCTA	CCCTTGATCCAGATGTGATG	SINE	Alu	Yb8	cttgcccaaggaagcacaaattataaatgacaaagacagaatatgaatccatgtctacctggctccaaagacattatatacctcatcacattcgtaagca<br>atgattttatcactggcttcaataatttgatattgattccctcccaatgcaggtcaccgagtcttcatacacagaaattattcttcactcatggccccag<br>ctgcgtctcagtgaatttttttcccaagaagacgaagcagagtaataggctacacataggctacacacttttctttctgcaaacaaaatggtaagggtga<br>aatctttctctttcaataagggctcaagtaatactctctcctttgaaagtgaaaatgtttttgcagatgcttccctactcttcttc<font color="green"><u>AAAAAGAGATTTGT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA<br>GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGA<br>GATTTGT</u></font>gccatctgctcatcacatctggatcaagggtagtatgtctaaagattttttttcatttcattaaaaacaggaaggaaattttttttagttccc<br>aattgtgaaattatataatttcaacctttacttaggagtgctcagttacaactatcagtggtatctaactttgtcgtattctcacaataaaataaggatc<br>ttcttgttccagatacaaagaggcaacatgtagagtaaactgtgctggctttaggtaagacaaaactgactggagtcatggcctgactgccttactatga<br>gaaagctgtagaatcatcacacgagaggttagaaagtaatttattttcacttctcttgtctgcaaatgagaaaattgaaaccaataatgggta	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	93564987	93565294	1000769	0	-	Yb8NBC634; RIP_Alu_chrX_093_01	AACAGAAAGGCATCATTTGC	GGGGGCATTTATTACTGCTT	SINE	Alu	Yb8	tacctaaaaaaggatctcatagcaccatgtacctcccctgcatagcacctatcacatatgcaattttatatgtttatatgaatccttgattaatgtccac<br>attttttgtagaatgcatattccataaaggcaaaagctctgttttacttaacattgtatttttttgcacctagcatttcctgatacctaatcagtatttg<br>aaaatatttgttgaacatataaatgaatgaagacatatagaagttttacctactcaagaccatggcagactatatgttccttaagagcaggaacgatgca<br>cttatctgtaaatccatggtggcttggatttttttttgagggggggggcatttattactgcttagtatataattgctgccttt<font color="green"><u>AGAAAAACAATCCCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAAACAATCCCATG</u></font>gcccatctaacaagaattgcaaatgatgcctttctgttaagtcttcaagtagaaaattttaaaaaagaataagga<br>agaaagaagagcaaattagcaacaaagaaagtaccagataattcacagactaccacagtaatgtggaaggcagaaatattacttacagacacagatttct<br>atatattttagtgaatagaatgtgctcaataaacatgtcaattctattatttcaacaaaacctattaagtatatcctcataagcatcacagaggttttct<br>taacgggtgattatttttggttcaaaagaagcagcctcaaaaatttctgtgctgtgaacattgtcaatacctcattcttagcacttaccatctctgtgca<br>caccagcc	UCSC	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chrX	45587548	45587549	1000770	0	-	Yd3JX437; RIP_Alu_chrX_045_01	TGGTGTACCTTAGTCCAAAGACC	TTTGCATCTCAGAACTTTTTCCT	SINE	Alu	Yb8	ggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccacggtgaaaccccgtc<br>tctactaaaaataaaaaaaaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcggagaggctgaggcaggagaatggcgtgaacc<br>cgggaggcggagcttgcagtgagccgagactgcgccactgtactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaa<font color="green"><u>AAGAAATA<br>AACCTTC</u></font><font color="red">AGTCTCCTGTTAGGATGAAGTAGGATCATTCTCGACTGCTTTGAGTGGAGGAAGCACTTTGGGACCCCAATTCTTCTTAAACAGATTTTCAGT<br>GAAATCTCCTGTTTTTAGCCTTACTTTAACCAGCATTTCTACAGCTGCCACCAATTCCTAAGCTGTTAGGAAAAAGTTCTGAGATGCAAACTGGGTTGTT<br>TCTGGTTTTCCTGCTGCTGGCTTAGAATTCAGCTGAGTTGAGCCTTTTAGGTCAGTTACCATCTATCCATCTGTTTTCTGGCTTCCATAAATTTATTACT<br>GTTG</font><font color="green"><u>TCTTCTCTCTC</u></font>ctttgttcttgtgactctatgacagatgtaaatgtgtttgttcagttggtcattgttattcagaacagtgctctccttttaactt<br>aaattcatgataata	Other	<UL><LI>Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14604797">PMID: 14604797</a>.</LI><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	547	240	NA	intergenic
0	chr7	104187402	104187715	1000771	0	+	Yb8NBC201; RIP_Alu_chr7_103_04	GGAGAAAATGTAAGGTTTCTAGCAC	ACCAATGCAACTATCTACACTGACA	SINE	Alu	Yb8	tccctcattgtaatgtgagtgacagtgtttaattcattgtagtacaaattgttactattgctaatgttcttaatatagcacattaaattaaagagtcact<br>gtagctgtacaaaatcatatagagagctcaccactttcaattaattcggggatcctcccaaggctgcataactgagctgggagagttcttcctttgtcac<br>tggagacctgggttgaaatcctggagacctgggttcaaatggcttgctgtgagaaagttacatgaccttgaacattactctgagccagttttctcttctg<br>taaaatgagaataatcatctaagcctgttaatgggatttaggagaaaatgtaaggtttctagcacaaatgttaacaagctctt<font color="green"><u>AAGAAATAGTAGCTCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAGTAGCTCAA</u></font>aatatgtataatcaacaataattaatcatcctacttctaagtggaattaatgtattcatctgtcagtgt<br>agatagttgcattggttacttcaaaacactcgaggggtagagggtagttctttttcagtagagcagtatattccaggggttgaaatctgggcttgggacc<br>acgagaattatagagtatgagtaatcaatagtgatgtagtccagggtgatccttgaggttgcagtcaattaatataaaagcagttttaatataaaacttt<br>aatataaaagcagctttcgtgcatgtgtatcctatataagtcatggttgctgatgatggcagaggcagactgggttctccagctgtccagagagccatgt<br>ttctgtaccctatt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	476	145	NA	intron:LHFPL3:NM:199000:1/3
0	chr2	39592577	39592884	1000772	0	-	Yb8NBC189; RIP_Alu_chr2_039_01	GGAAGATTTGAGAGTGAAATACCC	ACATCATGGCCTGAACTAGTTTTTC	SINE	Alu	Yb8	gttctcaggtctcctgaggactctttcatgggccattggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttgactcctttca<br>cgaacaactgaagtactgttaatttcatttattgtttctaccatatgaaatggagtttagaaattatgtattttgaatgacaccacacatgaaattaaaa<br>gttaatttgaaattgactttaaaacacttttacatgtaacgtagatgtgtgttctcacttctctgtgtttaaaatagaatggaaatgggaagatttgaga<br>gtgaaatacccataacaatggcatgagaaaccttgttgatttttcgtagtctaagcttacatttttctcttggctataggacatttt<font color="green"><u>AAAAATTACTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATTACTATG</u></font>gcgtaacccaaaaataaaattctaagccccccaaccgactgatggaggctctcctcagccaagggcattccaaagttaa<br>cctgaaaaactagttcaggccatgatgttaccatcataatgagactccgacatcctcattataccctcctccctttggaattcaagctcagctgaccaac<br>attaacatttaaatagagatcttaagactagtgaacagactttttatagcaataagacacagaattccagcctgactctagtatagcatcacatgacaga<br>tagcaggccctgaaagaaatagaagtattttatcccaagtatatttctttgatatattttgaaatggtcctgcaaagccgtctcttgtgggggaaatctg<br>tattctat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	67	541	220	NA	intron:MAP4K3:NM:003618:2/34
0	chr12	15623434	15623435	1000773	0	-	Yb8NBC77; RIP_Alu_chr12_015_01	CGGAATGTTCTGAGGATCAAA	GGAAGCTCTGCACAACTCCTA	SINE	Alu	Yb8	gtctgccccagcctgtaggctgccaggttatagcccttgaattccttgcactgccatttccttgaccattactcatcttttgtccttcagtttctagatc<br>atactctattttcttggcccaaccagagtgtaggtgatagctaaagtctgtcaccaattaagcattaatttaaaataagtacaaatgatattttctcatc<br>aagttgccatgtgtgcatgtgtaaaatgacagttcaatatatataataatgcagcaattatttcctgacttctaaaatgaactcaggctggaagctctgc<br>acaactcctaattttggagattaaacaaaacacacttgaggaaagaattcaacctgccagttttaagtgaaaagaaattgttctgcc<font color="green"><u>AAAAAGAAGTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAGTGCC</u></font>aagattttatgtgatatgtagggtaataataatagtcatataccaaattttatattttagaaagcactttc<br>aaatatattttctcctttgatcctcagaacattccgttaagttactgtctcaattcacagaagaagaaactgaggttcaaataattaaatggatttctca<br>aggctaccctattatattgtggaggagctagtactcaaggcaattcttataactacagattttgtgactctattgtactacagtccccagactgtaagat<br>cctggagccaagatgatttcccaaatgctacctttcatatctgtacttaattggtggcaagttccctcagcacaaactgtgactgacttcttctagaata<br>tgcctgataaatcctc	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	547	218	NA	intron:PTPRO:NM:030667:1/27
0	chr12	97554742	97555055	1000774	0	-	pAlu12-97487591;Ya5NBC147; RIP_Alu_chr12_096_01	TAGCTGGGGGAGGTAGATAATAAAC	AAATATCACCTTATCAGTGGGACCT	SINE	Alu	Ya5	ttacaatagcctcccatctcatctccttgccctataaagtctattttcctcacagaaaccagaaaaatccttcgaaaacataacttggatcatattactc<br>ctcaagaccctccaaagtcttccccatgtgtcctggagtaaccatctagccccactccttccatgatctcacaccctcctcactcccctcctcaccctgc<br>ttcagccctactgggttcttgttcttccttgagcaccagacaagctccccgcttctggcctttatacccactgtttctgtgaatggaatgctttctcaag<br>acatccatttgatttcctccctcattccctctagtctctgctcaaatatcaccttatcagtgggacctgccctcattatctcattt<font color="green"><u>AAAACACCAAGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAACACCAAGCTC</u></font>cttgtccccatctctctctgcctccctacttgctttattttgcctcctaacatttgatgtataatatattta<br>ttaacatttatgtttattatctacctcccccagctagagtggaagctccctgagggcagaaaaattggttgaaacactgctttctccccagtacctagaa<br>taggcatgggcacatagtagacactcaagttgttgaagaagaagaaataaagccaagtcgaggtaccaggatacagtactggttgtgttgcattacatgt<br>atttgtttgcacagtcagagtttcaggctttgggagaaagagccctgtccctagtgtgtaataaagtgttcattcagcaggcttggagtgtttaaaccct<br>aaacattccagagg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr14	106954402	106954712	1000775	0	+	Yb8NBC100; RIP_Alu_chr14_106_01	CGCAGGTGCAATAATATGGA	AATTCCCTCCAGGTTGCTGT	SINE	Alu	Yb8	gttacatgagtaatttctttggtgatgatttatgagattttggcgcacccatcaccccaacagtatacactgtacccaatttgtagtcttttatccctca<br>gcccccctcatctattccaagtccccaaagtctattgtatcattcttatgcctttgcatcctcatagcttatttcccacgtatgagtgagaacatataat<br>gtttagtttcccacttctgagctacttcacttagaataatggtctccaattccctccaggttgctgtgactgtcattattttgttcctttttatggctta<br>atattccatggtaaatatatacatatatacacatatacacgtatatatgtacatatataaaaaatatgtatatatagaaaatat<font color="green"><u>AAAATTATATATATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTTCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCCCAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAATTATATATATAT</u></font>ataatggtgtgcgtgtgtgtgtgtgtatcacaatttctttatccacccattgactgatgggcatttgggcccg<br>ttccatattattgcacctgcgaattgtgctcctgtgaacattcatgtgcatgtgcaagtatcttttttgtatggtgacttcctctgggtagatcccagta<br>atgggactcctggatgaaatatttgttctcctttttttctttaaggaatctccacactgttttccatggtgtttgtactagattacattcccgccagtgt<br>tcccttttcactgcatcatcaccaacatctatttttttattttttgattatgactattcttgcaggagtaatgtggtattgacttgcatctccattgtgg<br>ttttgatttgc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	574	247	NA	intergenic
0	chr14	81597054	81597359	1000776	0	+	Yb8NBC148; RIP_Alu_chr14_080_02	CCAGGCCTCCATCTTTGATA	TCACTTTTGGGCATGTCAAG	SINE	Alu	Yb8	aaaactccgtttaccaggtcaacagtgacttccacaattgctaaatcaagtggccaattagtacttatttcagaggcatttgactcagttgctgactcca<br>tcctccttggaatgtattcttcttttggcttccaaatcactactctctcttggtttttctccatacctctgattgttccttcctactctgtttttctagc<br>tcttcttcttcttcttcctgatctcttaatgttggagtgccccaggcctccatctttgatattctttttatctatatcttcattcacttccttggtgatc<br>ttatccacttgtatggatttacctaatgcctatgatacccaaatagaaatctccagtccagacaattctcccaaattccacgcttat<font color="green"><u>AAAACACTGCTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAACACTGCTTG</u></font>actgccgtcaccatctggatgtctaataggcatctcaaacttgacatgcccaaaagtgaatttctgatcattccctccaaa<br>cctgcctcacctgcagccttccccatctcaggaaatggcaacttcattctcccagctgcagactagaaatcttggagtcattctcaacccttctctttct<br>cacataccccatatcccatccatcagaaagtcccaatggctctacttttcaaatatctacaaactccaaccattttcagtatctccactgctaccaccct<br>agtccaaagcaccatcctttctatttttgatctccctgtttccacgccttactcactttggtaactttcaaagcagcagccagcatgatcctttttaaat<br>aagtca	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	537	218	NA	intergenic
0	chr16	32060815	32061128	1000777	0	-	Yb8NBC10;pAlu16-33001116; RIP_Alu_chr16_031_01	CACGACAACACGTTTACCTCA	TTTCCTTTCAGGAACGTGGA	SINE	Alu	Yb8	ggaatagtcacgtaggccttaatctggcttagtgaaataatagagcaaagggagcaatcagatatgcatttgacttacatgagcagagaaatgactctgt<br>ctgtctttggcccacaaggattttacttgtggtcaaattttgaaggaggtctgtagcttttaaaaaccgtagtagctatcattttagtgaaataatggag<br>gtggatttaccccaaacagttttcagcttgacttcccttgggcttagtgatttggtggtcccaaaggtttattttcctttcaggaacgtggaaatcttga<br>aagaaatgagttcttgtagagagaaatgaagccatagtgttagctaaactgaggccgaggctgccacatgaaatatagcctatt<font color="green"><u>ACAAGACAAAGCTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAAAA<br>AATAAATAAATAAA</font><font color="green"><u>ACAAGACAAAGCTACA</u></font>aacgtgttggattgcttaaattccagtgtggtaaacgtgttgtcgtgtaaaattctcaggaaccacatac<br>tgaagggcactgataaagtgaattaaatatggcctgagaaggactccgtaattctgtgtttgagtccttctggacaaactgtaacctacctgaataggtg<br>gacaagattgaaaagccaacttcagagcatgagcctgtaacaatagcggagtcttggccaattccagcagccatacctcaaccactcatacactcttgag<br>tgtgcacattttgtttaaataagacaaaaacaacctgtaaccaatccagctgtttctgtacctcacttctgatttctgtacatcatttttctaatctata<br>aaccttcttccacc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	505	165	NA	intergenic
0	chr16	26608038	26608365	1000778	0	-	pAlu16-26535378;Yb8NBC13; RIP_Alu_chr16_026_02	TCTGGGTTTCTCTGGTGGAC	CTGGCAAATGCTACCCAAGT	SINE	Alu	Yb8	gaggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtgggtcacaggtcaggagttggagaccagcctgatcaacatg<br>gtgaaacccagtctctactaaaaatacaaaaattagccaggcgtggttgcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgctt<br>gaacctgggaggtggaggttgcagtgagccgagatagcaccattgcactccagcctgggtgacagagtgagatcccatctcaaaataaaaaaaaaaaaag<br>caagtggcgaaacctggcaaatgctacccaagtgatgaatgccaacctcactgaggaagcctggtggctctcatgcagccttggat<font color="green"><u>AAGATGTGAAGAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATGTGAAGAGG</u></font>aagatgcttcagttttgtggtgttcttcccccaaacccaaactccagtctactcatga<br>gaagtccaccagagaaacccagagtggaggacattctacaaaatacctggccagtatccccactaggacttccagggtcatgaaaaccaaggaaagactg<br>agaaatggacacatcagaggagactggggagatgctacaactaaatgcaatgtgataccttggatcagatggtggaacagaaagaggacatacatggaaa<br>gacagatgaaattgtaattaagtccagaatttagttaataataatgtaagaatgttggtttttcagttgtgacaaatttactcaggttatgtgagatgtt<br>aacaagaggagaaaatggctgggcaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	510	168	NA	intergenic
0	chr16	83003990	83004270	1000779	0	-	Yb8NBC146; RIP_Alu_chr16_081_01	CTCTTCTCTCCAGGAAACGTC	GGAGCTCTGCCTTACACTCAA	SINE	Alu	Yb8	aattaggccagtatgccccagaatggtaaaaggaaaggatataggtggagcacctacagtgtctgctatggattttgcaacctagtctatgtgaaacctt<br>ttaaacatttatttgtacattcaacaaatattttaaatgtgcctgcactctgagtaagtactgaagcactgggcattggaaggtaaaaaagtgctcttgc<br>aataattttaataaaatttcaaaggtaaaacaagtcattatagtcattatagttaatactaatgaatgctctaatagggaaataatagaggggactttgg<br>taaatacagcactggaacttaatctattatgcagatcaaggagctctgccttacactcaaacaggtaaggtttaagctgagccctt<font color="green"><u>AAGAATATGCACTG<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAG<br>ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATGCACTG</u></font>ttcac<br>aatagcaaagacttgaaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatataccagggaatactatgcagccataaaa<br>aaggatgagttcctgtcttttgcaggatcacggatgtagctggaaaccaacattctcagcaaactaacacaagaacagaaaaccaaataccacatgttct<br>cattcctgagtgggaggtgaacgataagaacacaaggaaacagggagggaaacaccacactgtcgatgggtaggggtctaggggagggatagcattagga<br>gaaatacctaatgtagatgacggattgacagatgcagcaaaccaccatagcacgtgtatacctacgtaagaaacctacaag	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	887	592	NA	intron:CDH13:NM:001257:2/14
0	chr16	2102235	2102236	1000780	0	+	Yb8NBC230; RIP_Alu_chr16_002_01	CAAAATGGCCGTGTTCTTTT	GTGTCCACGGATCTTTGCAG	SINE	Alu	Yb8	gtggatggatcacctgaggtgaggagttcgagacccgcctggccaatgtggcaaaaccctgtttctactaaagatacaaaaattagctgggcatggtgtc<br>gggcacctgtaatcccagctacttgggaggctgagggaggagaatcgcttaaactcaggaggcagaggttgtggtgagctgagattgtgccattgcactg<br>cagcctgggcaacagagcaagactgtctcagaaaacaaaaaaaagaacaagcgtcctgcatcctgttctgaaagttgtttgtgtgggtacggggcagcct<br>gtgagtggataaataggcctccgaggctgggatggtcccgggccctgtgtccacggatctttgcagctcaggttgcaacggt<font color="green"><u>AAGAGTATTGTCAATGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTATTGTCAATGAG</u></font>acaaaggaggtgagagtgccagtggttgggatgttggtcagatgacatctaaaagaacacggccat<br>tttgttattatttggttagagacaaggtctcactctgtcacccaggccggggtgcagtgtcacaatcatggctcactacagcctcaacctgccaggctca<br>cgtgatcctcctactttagcctctcaagtagctgggactacaggcatgcagcaccacgcctggctaagttttgtattttttgtcgtgacagggtctcact<br>gtgttgcccaggctagtctgaaactcctgggctgacgtgaccctctcccctctgccacccgaagtgctgagattacaggtgtgagccaccgcacttggcc<br>ggaacacggccatttt	Other	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	62	458	124	NA	intron:TSC2:NM:001114382:3/41
0	chr17	14962961	14963267	1000781	0	+	Yb8NBC24; RIP_Alu_chr17_014_03	AACACTCCACCCAATAACTG	CATCTCTTCTTTACCTGTTTCC	SINE	Alu	Yb8	ttagcatacattcaatgacagctttaaaatgcatttgaaaactttaataactgaaaagaaaataaattcataatttctgttggagatttaacattcttca<br>tttaatagccaggtaagaacaaatagatcaaaaatcagtaaggatataggatacttgaataaaaagattaaccggtgaatcagatagaattggcatttgt<br>agaacactccacccaataactgcagaatacatatttgtttcaagtacacatgaaatattcactaagataagccattttttggccataaaatgaatctcaa<br>cagaattaaaagtatttaaataatatagtatattctctgatcacgacaaaattaacttagatattaataactgaaaacgtatct<font color="green"><u>AGAAAATCCACAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGA<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AATAAAA</font><font color="green"><u>AGAAAATCCACAAATA</u></font>ttcagaaattatacaacacacatataaataatccacctattttaaaagatattaaaaataaaattagaaaaattatt<br>gaactgaatgaaaataaaaacatagcatatcaaaatttgtaggaaacaggtaaagaagagatgagagggaaacttatgtctttaattgtgtatgttagta<br>aaatagaaacctctaaaatcaatatcctaaacctctcctttaaaagccacaaaagataaatttaaatttagtaggaagaagaaaataataaagatgaggg<br>tagatatcagtataatacaaaattttatgaagaggaaatcaaaattggttttttgaagaaatcaatggaattgataaatttctatcaggattaataaaga<br>aacaaag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	56	661	338	NA	intergenic
0	chr17	66548807	66549121	1000782	0	-	Yb8NBC227; RIP_Alu_chr17_064_02	AAGAAAAGGGAAGCCTGGAG	CAGTCATCACCAGCCATGAG	SINE	Alu	Yb8	actgctcttaagaaatgcctgagactggataatttataaaggaaagaggtttaattgactcacagttctgcaggcttaacaggaagcatggctaggaggc<br>ctccggaaacttacaatcatggcagaagggggaggggaagcaaggcacatctcacatggtggcaggagagagaggatgcaaagggggaagagccccttat<br>aaaaccatgagatctcgtgagaactcactatcacaagaacggcacaggggaagctgccccatgatccaaccacctctcacagcatccctccctcagcaat<br>ttgagatgagatttgagacaaggggattacaatttgagatgagatttgggtggggacacaaagcctaaccatatcactaaggttt<font color="green"><u>GAAAATAAAGGTTTA<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAG</font><font color="green"><u>GAAAATAAAGGTTTA</u></font>cagggctccaggcttcccttttcttcagttaagcacctgccttgaccattttatagaacacaaggtgagt<br>gaggtattgtcctgaccctccagaaccagggagagggtaagagaagtgaggtgcccaggatgcaaaatttaaggaagtagcactccctgcacctaagaag<br>cactcacttgccaagccctggtcccagcccaggtgtacagtcttaagtagaaagaggcataaacaaactagtctaatataacagaaggcataattagaat<br>ctacaaagatgtagttgaaacacaaagaggaaagggttcattcttcttaggaaaacattcttcagggttttcagtaaatgtcttcattgtattttttgct<br>cttttcccataccag	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	881	546	NA	intron:FAM20A:NM:017565:3/11
0	chr17	60741324	60741619	1000783	0	-	Ya5NBC157; RIP_Alu_chr17_058_02	CATACGTTAAATCACTCGGTACTCA	TCAGAAAAGTATACAGGTGATGTGC	SINE	Alu	Ya5	agcgctgggcagggaggctggtattgcaagccggggtgactctgacctgcccgccctgggcctccaggcagccctgcagtccatggctgaagatgaggaa<br>gacgttgggttctggaagggaaggcaagacacgaaggcatcacaggggctctcctggttggcccttgatgaccggtgtggctgacaggcacctaccatgt<br>gcccagtgcaggatggtgagccgtcactcatacgttaaatcactcggtactcactaccaaccctctgaggtggaaatgagtggcagtgctaagcccttgt<br>gcccagatgaggcagaggcctgcaggactacctctgttctagcccctgctcaccaggagggaggactcagtcctctgtaccaccctc<font color="green"><u>AAAAGCAAACCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GCAAACCCA</u></font>actccacccggcacatcacctgtatacttttctgaagattttatgaggaggagtggaggcatttacaccacacaccacgttgcaacctcaa<br>tctcaatctctattacatggcgtggtttttctgccaaaattctcctttgatccggaggcattgtgtctcacccttccccctgccccttgcactggttcca<br>tcctttccttcttctaggatcttcccagaccactcatcccacccctgaactatttcacgccttaatttttacgcagcaatttaattctttggcttcctca<br>acctttcctctttccacctatctcctcgctgagcaggcaccctctgtagaagtcactgggggaaatccaacctgccccccaccacagcacacccac	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	516	207	NA	intron:MRC2:NM:006039:1/30
0	chr18	25827893	25828209	1000784	0	-	Yb7AD39;Yb8NBC80;pAlu18-25715783; RIP_Alu_chr18_024_02	ATTTCACAGTGCCCTGTCCT	TCCAGGCAGATGAATTGACA	SINE	Alu	Yb8	ttttcaaagaaaaaaattattttgagacaggatctcactctgtcacccaggctggagtacagtggcaatcatagctcactgaatcttcgaccttcctgac<br>ttaagcaatcctcctacctcagaccccaaggagctaggactgcaggtttgtgtcaccacatctgagtaatttttattgtttatatttttagaggcgaggg<br>tctcactatgttgcccagactggcctccaactcctggtttcaagcaatcctgcctccttggcctcccaaagtgccgagatttacaggcatgagccacaga<br>gccaagcctttcaaaattttttatctgatttcacagtgccctgtcctgataatctagtaatcctcagcatgaactcttggctgt<font color="green"><u>AGAAAAACTTCATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAACTTCATCTT</u></font>tttttttttttttctctgctaccacacacctgtcaattcatctgcctggaatgatctctctggaatt<br>tttctctaccttacatcatttttctattttaaagctcatcattctcactctgtttatttcaacctacacaggttcttttcttacatgtactcctataata<br>gtccacaacttctcgtgtatgtacattctctactgtattgttttccaacttttattgttacctatattattaaatcttcagtcagacgagatgttgcttt<br>aagtgaaaagaactcttacatttttttgtaaacgttccacaacaccccattaatgctaaacatatagatatctcattttgaatattgcattaatgaggaa<br>gtcatgcctagtttatt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	NA	NA	NA	intergenic
0	chr21	10969157	10969438	1000785	0	+	Yb8NBC18; RIP_Alu_chr21_009_01	TGTGGTGTGGGCTAGAGGATG	TGGGACTCAGATTTCTGATAGGA	SINE	Alu	Yb8	tcctacgaactgacctccttatacaactccatcaaaaaaaggtgcaaagttatctacaaatgctacaatgagaagaattggaaaccctgttaaaaaacac<br>tctgtatggccatgcaggctcctgagagtaaattccacaaatgtccatctgtctccgtgttttgtgtttccattttgtgcatgggtttgtttgtgtaaat<br>gtgttgacaaaagtgtgtatggatgaagatggatggatatatttgtgtatgtgcttggtgtgtgtatagctctatgcactcttatgcatacgtgtgtctt<br>catgtatttataactcacctttcactgataggtgacacccgggctgctcctttaaattcacttgtgtgtgggctagaggatgat<font color="green"><u>AAAAGAATACAGTCAG<br></u></font><font color="red">CAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>AAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAG<br>CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATACAGTCAG</u></font>at<br>aggagacgcgattctaaatttacttttttggaaaattagcttttattactctagacagaaaccaatgaattcctatcagaaatctgagtcccataaaaaa<br>actgcttagtaggaactaagggtggcaaatacattacaggaagaagcaagtctcctacgacctgctcctttttatagagctccaccaaagaaggatgcaa<br>agttactaacaaatgctacaatgagacgaattggaaactctgttaaaaaaaaaaaatctctatggccatgcaggctcctgagagtaaattccacaaatgt<br>ccaccagtctcctttctctttggtctatgtttccatcatgtgcatggattagtttgtgtaagtgtgttgaagagacgtgtgg	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	56	431	133	NA	intron:TPTE:NM:199261:6/24
0	chr21	33467851	33468076	1000786	0	+	Yb8NBC26; RIP_Alu_chr21_032_01	GGGTCCCTCTCTGAAGGTAAA	TTTTTCCTGCCAACCAACAC	SINE	Alu	Yb8	agaacagtgaaatgaaaggaagttggatccctgtatgacctgccagatcagagcagctgccctccatcctctctcccgaaactgccctgttcagctcaaa<br>ctttaaaggagagaaaaatgaacattccatcttgtttaagtcactcttattttcatctctgctaaagcaactgaaccaacatatacaaactggatcaata<br>agtaatttgcgctgtgattttgcttactatcatgcacatatattggtgtccaaaaaacatgagtgtgaaatcttgtcaaaagtttgctcacatgttacct<br>gttttttcctgccaaccaacaccacacaccactttctcataaaggtcttcttagatccaggaagctaacccagaaccctttaaaaatgat<font color="green"><u>CATATTCTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTATCTACTAAAAATGCAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAC<br>AAACAAACAAAAAAAAAACAAACAAAAAAAAAAACACAT</font><font color="green"><u>CATATTCTCA</u></font>aacagctaatagaaaggtcaattcagagtgatttaccttcagagagggacc<br>ctcagagagaaccttgttttggggagttgtaagaagccctgtaggctctatgaccttatatctcagatttttaggacaattctaatttaaactattctgg<br>ctcagttcccacaaatgtatttgtaagtgtacttgccatggtttttgttgagaaatgtggtcgcagtccctacgggcccctcagctgattgtcatccctt<br>cgtgtcatcttgccctctggtcttcc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	56	499	150	NA	intron:NCRNA00159:NR:024352:2/3
0	chr21	39093002	39093309	1000787	0	-	Yb8NBC36; RIP_Alu_chr21_038_01	CTAAGGAGAACGGGACAGAT	TATATTCTGGATCCCAGTCC	SINE	Alu	Yb8	ggattacatggtaattctatgtttaactttttgagggactaagatactgtttttcatagcagctgcactgttttacactcccaccagtgatataccagca<br>ttccaatttctctacatcctgccaacacttgctattttctttttttaaaataataaccatctaatagatgtgaagtggtatctcattatggctttgattt<br>gcatttttctaatgactagcaatgaagaatttcttttcatttgtttattggccatttggatatcttctttggagagatgtctattcaagtcctttgccca<br>tttctgaatgggttgtttattttttgttaaggtgtaagagttctttatatattctggatcccagtcccttatcagatgtatgact<font color="green"><u>AGAAAATGTTTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAGAAA</font><font color="green"><u>AGAAAATGTTTTCTC</u></font>ccattctgtgggttgggggtgatttttgatgaggaagaaaccacacttctgtgtcactaagggcactgcccaaacaa<br>ctgacacttggttaaacccaagagaaagatgacatctgtcccgttctccttagctcactgtgacagcgcccccagcccccaggcctcctggacaccctcc<br>tccttcaaggtcccctggacagttacagggatagctgactcgacttgtcctataggtttcactcctcaagttgcctcaaacttgcatacattctcatttt<br>tccttctaattcatacccccaataaggaccctgtagggtttagttacgattttcttggattcaggtcaagcaaatgtctcagtttctaaattgtcagctg<br>tatgggat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	506	183	NA	intron:KCNJ6:NM:002240:2/4
0	chr22	18047376	18047718	1000788	0	-	Yb8NBC120; RIP_Alu_chr22_016_04	CAGTGGATCTCCATTTTACCTCTC	GGAAAGGTTTCAGGAAGAAAGTG	SINE	Alu	Yb8	aaagttgtaagttactagccaatcaaaacaaatacaaaatataaagtcccattccagccaaaaaaaccagacagcaataaagtagacccatcaggttata<br>aacgaccctgtctcctttgttcagtatactctcgtgacaaaactgctagcaagtgtaccctttctgcagaaagtataaaaatggccttactaaaaaaatt<br>aaatttatattcaagtgctatttctttacggcaccaaggaacaagcattcctacaagtgagttgtgaactcaatgctgcttgagttaaggaaggtttctt<br>ggagttttggagacatggaaaggtttcaggaagaaagtggcaattgattttgggttggaggaaaggcaaagatgttgatggaatt<font color="green"><u>ATAAAAGCAAGGATA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>ATAAAATAAAATAAAATAAATAAATAAATAAATAAATAAATAA</font><font color="green"><u>ATAAAAGCAAGGATA</u></font>gagaggtaaaatggagatccactggcaaattgtctaatttgg<br>ggcaaaaggctgttaaaccacgttgggtctagatgaaacagggccctgctgccaggcgaaggatctgggagaggtgaagaatcagcactggatactttga<br>agtcagatgcacgttcagattccagctcctaaattatgaagtaatacactttaggcaagctactttagtgcttttttcataaaaggggaatgggacatcc<br>atgtaacaggattgtaattaatctgaaatgaggctgtagagtggacttgaaaataggattgcttttgaaacagtttgaatcttagtttaccgcttactag<br>ctgtgtgaccttaaacaagttacttgtctgtgttgcctgttca	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	532	212	NA	intron:SLC25A18:NM:031481:1/11
0	chr2	114362668	114362970	1000789	0	-	Yb8NBC126; RIP_Alu_chr2_114_01	AAAATGTCCCCTTTGTCCTTC	CCTACGCAGAAACACCCTAGA	SINE	Alu	Yb8	aggcacatagcttttcctctatagtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaa<br>gttttcatctacatgcatatcatttcttatggtttccaattaatcattccctcactatttttgggaaagacacaggatagtgggctctgttagagtagat<br>agctagctagacatgaacaggagggggagctcctggaaaagggaaagtctgtgaaggctcacctggagggaccaccaaaaatgcacatattagtagcatc<br>tctagtgctggagtggatgggcacttgtcaattgtggttaggagggagaagaggtacctacgcagaaacaccctagaacttctctt<font color="green"><u>AAGATGCCCCAATC<br></u></font><font color="red">GGATGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAAGCCCCAATC</u></font>atcattcattctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggacaaaggggacattcttaagagaaa<br>cctggcaccataagtacagattaaggcagagaaagacattcaaaagaggcagctgcagtagatacaaacgtgaccgctgtcagcctgcctggtatggtgg<br>gaaggaggctggtgccagagtggattcggattgatcaccacacatgtacctcaatcaagtgaggaggtcccacaaggctaagtggggcaagtcggggacc<br>taaggcagtagcaggaaaaccaaagaaaacaggcggagacttgagacagaggtaggaatgtgaagaagtccaaaataaaaatccctgcacaggactctta<br>ggc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	438	118	NA	intergenic
0	chr3	186029624	186029945	1000790	0	+	Yb8NBC181; RIP_Alu_chr3_187_01	CATGTACCTTAGAATTCCACTCTCA	CCCCAAAGTTTATAGTCTGTTGTCT	SINE	Alu	Yb8	ggtaggagcatgttttgcattcacccagactgtcaggactatccacatacagttctgtcctaaatcgggtgttcagaaagtttttctctttgatcaaggt<br>taccagtgccctaagaagttttcagtccaaaattgtcttctatactttatgtgccaagaactctgggacctaaaccaagcactgttcctagtgtttgagc<br>aaattcaaagccttttaaagggaaaaatttggccctacacacagacacctttgttgccttgtcagtgtgggacaggggtgcgttccatctgaacaagcag<br>acaaatcagagacttcagtgtttacagcagaatattagttgtgctgccaggactagaccccaaagtttatagtctgttgtctagtt<font color="green"><u>AAGAACACAGAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACAGAGTA</u></font>tttgagcattagaccattaaactgttaaactccgaaaaaactataaatcaacattttcaaaagt<br>gaatctgaaaatccatatatgagagtggaattctaaggtacatgataactcttcattcctcaaagttctctatgagcttctcaaactgtaatgtgcgtat<br>gagtcacattgggatctggtaaaaatgcagattctgtaggactgggccacagcctgagattctacattctgaataagatcctaagtgacaccaattttgc<br>aggttcacggacctcacttgatacgcaggctctaagcaatgtccctgtggatctggggctgactgctgaggcttgcctgtcacaacccagaaaagaccac<br>gatgccgaggacaaaggaacat	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:DGKG:NM:001080744:2/24
0	chr5	144597045	144597342	1000791	0	+	Ya5NBC16; RIP_Alu_chr5_144_01	CTTAACCAAAATAGTGGACGAGGTT	CAGAAGTATTTACTACTCGAACAGTGAGC	SINE	Alu	Ya5	gtgaaaataagtatattatgcatggttgactatcactttcataaaataaaaatttatttaaaaaagaattcactcctataaatctcttacttacaatcag<br>aaaacaaaatccttttaattatatgtctatgtcatcaattcagggatatgcatgttccttacatttcacttagtttaatgcactagtattaattacaatt<br>taagattaactcattctccacaaaatcaaaggtctgaaagagaataattttatttatttgcttcatattatcagaagtatttactactcgaacagtgagc<br>aaaatggtttactataaggttgaggctattattcatttagaattgaggtgaagatacaatactttgtaggcaaaaaaagcaatttagt<font color="green"><u>AAGACTGTTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGACGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GACTGTTCCA</u></font>tctcatttagatttcaataatgtatttttattaaataatgggggaaaaaaacactgtgaatgaaaaggcatcaataacctcgtccactat<br>tttggttaagggaattcaaaatgtaatttttccccaagattgctgttaacatctgccatttatagtcttttagcatggtgctctatgatttttaatgatt<br>tgacttcaaaaaaacaacagttactcttttctaatcagaaaagcaatacatatttttgttacacaatttggaaaatgcaaaaactattaagaagaaaatg<br>aaaatcgcctgttatcctatcaccctgaggagtttttgtagcatttcatgcatatgtatgtgtactttgccacacaaggatcatgctgcatagcagcc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	539	229	NA	intergenic
0	chr6	9460393	9460714	1000792	0	+	Yb8NBC49;pAlu6-9522838; RIP_Alu_chr6_009_02	GCAGTGGATTGGTTTTTCTG	GCTGAAAGAGGCATTGAAATC	SINE	Alu	Yb8	aaaaattctatattccccctccctttgtatccacttactcttgtttcagctcaaatcaaaaaaataaaaaaagaagaattatggcctgaaggagaatgga<br>gagagttggtttcatgaccagaatcaaggaggaaagcttgcctgatcatcctcagaacaccatgagatccttgaaacagtagagtctcttttgattataa<br>aatatttattctgcacagatcaaaatggtgaagggagctgatatatctcaataagcaacatttttaaaaattatgataatttttgtattaactaattttt<br>tatgacaaacgttatgaattcatcagatgttaaagctgaaagaggcattgaaatcagatgaatccttcagagagaaaagagcctt<font color="green"><u>AAAAATTAATAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCATCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTAATAAACA</u></font>tatataaagtcacacagagatccagtattagtctcagacaagtgattttaatctttatgtttt<br>ccttaccattattactatttcattcattatcatgacactttaaagtttttgaaacacagaaaaaccaatccactgcttacagtttcccatcaataaatca<br>ttaaattataaagttcatatacaatatagtagaatttatgtcagtttttaaaatattaaaccaaccatagttccaatcaatgtaattaaactaataatta<br>ttgagacagtacagaagtacaattaaagtgaattctcatgtctggttgtctcacttatattctggcttgaccacttactaacttatgtgacagtttttga<br>cctgtaaaatagaaatactagt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	542	205	NA	intergenic
0	chr6	25529885	25530011	1000793	0	+	Yb8NBC67;7451; RIP_Alu_chr6_025_01	TCTCTACCCAGCTTTACCAA	GAGGACCAGCTTAGTTTGTG	SINE	Alu	Yb8	cccagattttatgttcacaatgtcaggttcattaaaaaaagaaaaaaaattccgagattcttttgaagaaaagtttgatgaatattaattaacacatgct<br>gaagagaaactgaggtgtttttctcttatactgcattcctcttctctctacccagctttaccaaagaaacagaattataataatttaaaaaaatgtgaaa<br>tatttcttttccaaaaattaaccaaaaccaaaaatcacaagatatttgaggaaaacaatctatgtgtcaaagagcgagatgaacaaaggaattgagctca<br>gataatgcagagtacagcagagagctttaaaaaaaattgttattgtaagttcattgggactgcagagaatgatacatccataaaat<font color="green"><u>AAGAATAGGCTGCT<br></u></font><font color="red">AGAATGGCGTGAACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGGCTGCT</u></font>atgaacaggagtagtcagagaataagaaacaatgcttaacaattaaaattgtgatactg<br>tagtacagaattaaataaactgatggacacaaactaagctggtcctctggaagaaaaagtagagcaaacctttatagcttataataaaaaaagacattaa<br>aaatatgaaagcaaagtaggtgaaatggtgaattgacttagaataatcaacagccttctaatggagcttcaaaattattataaaaatgagagatattaga<br>ggacaggaaagaatagaaaaccatttcatatgagtctcggggttgatataacccactagaattgatcagaatgagtgggcaaaaggacccacacctaaat<br>atatcttggtggaatctcagaacacct	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	503	375	NA	intron:LRRC16A:NM:017640:24/36
0	chr6	33093425	33093738	1000794	0	+	Yb8NBC65; RIP_Alu_chr6_033_01	ATCTCATCTCCCTGCCTCTG	GGGAGGTCTGGAGATCTGTG	SINE	Alu	Yb8	cgtaattggttgagagaggtgtccaaataaaagtaatacaatttgcaaaatctgtcactaagacttcatagaggcccaaatcagcgacatggcagcattt<br>tctttcatggtaatcagctgccagattgcagagaccccctgatgccagactaaggagtgtggatttctcctctaggccagcaggtccccaacctcactgc<br>tcagaagactctccttgagatcctctgtgaagcaaagattcccccagactcactgcctagagattcagattccctaggtggggaggtctggagatctgtg<br>tttttaatcagctcccaagtgattcccatgtaaccagataagtgtcagaacactgaagatttttgaaaatcttcagaaatctt<font color="green"><u>AAAATGACAAGGCTGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAGCCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAATGACAAGGCTGGA</u></font>aatctgttttcagaagactgtgaagtcagttggagagagcaggaaccagaggcagggagatgagataag<br>aaactgctattattgtccagggaaatcataataagggcatgaattagaataaagaaaaacacaggggtaggggagacggaggaaagaggaggatagaagt<br>tctggccattccagtgtggatgcccacccaaatctagaattaactgagcaaaggcaactagaacaaacaggaatccttgccttggtgaaatatatttgaa<br>ctgggtcagaaatgaggccactgggtatcaagccttagctgcagcgccccctggaggtctctgatgtgctccaggctgaccagctcccgtcaaagaagat<br>ggagcaaagtgctt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	517	186	NA	intron:HLA-DPB2:NR:001435:2/5
0	chr7	31759535	31759811	1000795	0	+	Yb8NBC192; RIP_Alu_chr7_031_01	CTGCTGTACCCTAGGCTCTTCTATC	GCTCCTCTGCTTTTATGTGTTCTAC	SINE	Alu	Yb8	caatgctattataatttattggtgcaatgttctcacaagttccaggacacaaagatctttccttgacataatccctccatgctctccccagccacacgat<br>tctctccccatcccctcacaatgcatggccgtgtggctctacattttgtccgacagacagtagctggaataaaaataaattccacacattaatttaaata<br>agcccattgggcagataaagtgtttgggcataccagtcaatattcgttgcctaaagcttctactccgaaagaaaccagcaccatggccaatgctgctcta<br>ccctaggctcttctatcccagaggaaagcatcttgtttctattgtcaaatgttcgggggattctttgttcaaaggaaatcatactt<font color="green"><u>AGAAGTCTAATGTG<br></u></font><font color="red">GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCG<br>GGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCG<br>CCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTCTAATGTG</u></font>tagaacaca<br>taaaagcagaggagcaaaattggagtaggggaggtagccccaagtctgcacccaccttaccgcccccctcaaccactgccttcatctaatggcctttaag<br>gaaagccctagggcccttgagagcagggtcagaaagcaccgcactaggtaagtaggcagctccgagcttcccttccactgcctacatcgtaagcgtctct<br>gctcacactcagccccaagcctcctgtgtcgagtgggatgagggttttcattgtgtgggtaatgtatgggttttaatattcaagtttgcagtctctgtct<br>ttgatataacctgtgcatttctgaataggaacaatgtccctggcgactcctcactctgagcagcagccaaatctgca	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	423	132	NA	intergenic
0	chr7	103722866	103723171	1000796	0	-	Yb8NBC134; RIP_Alu_chr7_103_05	TGAGCAAAGGATTTGAATAGGC	AGGGTTCCAGTTTCCCCATA	SINE	Alu	Yb8	tcccttgttagctatattcctaggtattttattctttttgtagtaattgtaaataggagttcatttatgacttggctctctgcttgcctgttgttggtgt<br>ataggaatgctagtgatttttgcacattgattttgtgtcttgagactttgctaaagtttcttatcagcttaagaagcttttgggctgagatgatgggatt<br>ttctaggtataaaatcaaggcaacctcattttaaaatgagcaaaggatttgaataggctttctctaaagaaagtatataaacggtcaatgagtacatgaa<br>acaattctcagcttcattcatcattaggaaaatgcatgtcgaaaccataatgagatactactttacaccattatcatggcaataat<font color="green"><u>AAAAAAGATATACG<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCATTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAAGATATACG</u></font>ataacatgtgttcatgaagatatggggaaactggaaccctttcttttttatgatttcatttgatttttatttatttttaa<br>aattatttccataggtttttagggaagaagtggtattagattatataagtaagttctttagttgttatttgtgagattttggtgtacccataacccgagc<br>agtgtacactgaacccagagaaattggaactgtcatacattgctggtgggtatgtgaaatgatgcagccatttgaaaaacccttggcacttcattaaaat<br>attaaacatggagttaccatatataccagaaatttcactcctagatatatgcatattcaagagagttgaaaacgtgtccacacaaaaagttgtacatgaa<br>tgttca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	526	206	NA	intergenic
0	chr7	82946836	82947143	1000797	0	-	pAlu7-82545393;Yb8NBC5;1104685591424; RIP_Alu_chr7_082_01	AAGGTCTAAGCGCAGTGGAA;NA	TGTATGCAGGTTGCTTGCTC;NA	SINE	Alu	Yb8	atatttgattctaaatctagaaacatgaagagaaaatgagtagaatcttgctattatatataataaagcatatgttggaaatatagaaataaagggatta<br>atgtaatggattagtttgttagggagaattatgtgtatacagtatatacactatatatgtatatatatatgaatatatgtatacatacatgcactgtcac<br>atgtacataaaatgaatttataaaaagctgaattttccagctaatggaaaatataggaaaattaggaatttaaatgttagaaacaaatagatcacttctt<br>gataacatagggaaaatcacttctagatgatcataaggtctaagcgcagtggaatagaggcatgggattctaataaaacaatctgcaatt<font color="green"><u>AAGAACTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTCTG</u></font>tacaaaacacattaaaaaaaaaccctgggggctctgtagactgatcagaaggaagatatttttg<br>cagaagcgataaacttggagcaagcaacctgcatacagtgagtttactgtcttactgtagctttactctggggaggtcaagcctggtcaataaatctctg<br>attaagaagttatttaactgattggtaaaactgggatcaagagctggttgcacttaccttagcaccgatagcttccctcccattctcctaaggatctgat<br>ttcctgcagaaaatttttattctgttctgcttttctctccaaatgttgcagaaacaggtactggtctttcagagggatggccatggttgttcagatcttc<br>tagcagatagacgggatgacacactc	UCSC;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA;NA	60;NA	503;NA	167;NA	NA;NA	intergenic
0	chr7	96067522	96067827	1000798	0	+	Yb8NBC69; RIP_Alu_chr7_095_02	CTTTCCCAAGGCCTCTGTC	GCCACACACCTAAAGCCATC	SINE	Alu	Yb8	aacaaacattattttaaaattcacatggaaccagaaaagaacccgaatagccaatgaaatcctaagtgaaaagaacaaagctgtaggcatcacataatat<br>gacttcaaactatactgtaagactacagtaacaaaaacagaatgttactggtacaaaaatagacacatagaccaatggaacagaatttaaaaacccagaa<br>ataaagccacacacctaaagccatctgatctttggcaaagtcaacaagaataagcaatagggaaaggactccctattcaataaatggtgctgggatagct<br>ggctagccatatggagaagaatgaaactgggcccctgcctttcaccatatacaagatggattacagatttaaatgcaagacctcaaactat<font color="green"><u>AAGAATTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAATTCC</u></font>agaagaaaacctaggaaacataattctggacagaggccttgggaaagaaattatgagtaagtcttcaaaagcaattgcaataaaa<br>taaaaattgataagtaggacctaattaaactaaagagcttctgcacagcaaaagaaactatcaacagtcaacagacaacctacagaatggcagaaaatat<br>gagcaaagtatatattcaacaaaggcctaatattcagactctataaggagcttaaacaattcaacaaacaaaaactacataaccccattaaaaactgggc<br>aaaagacatgtacaggtactttttcaaaagaagacatacaagcagccaacaaacatgaaaatgctcataatcactaatcatcagagaaatgcaaatcaaa<br>accaca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	557	242	NA	intergenic
0	chr7	8750276	8750591	1000799	0	-	Yb8NBC237; RIP_Alu_chr7_008_01	GCCAAAATCAACTGCCAAAC	TGCTGAGGATAGAGCTATAGCAGA	SINE	Alu	Yb8	tatactattttacatcaaaaataaatatgtctaacccatgctggactagcctaacaatatgttactgacttcaaaaagaaaacaaagtaagaacaaagag<br>aaccaaatatacaaacatctagaaggccaatggggtcaaaaaataagtatgtccgtaaagtctttgttttcttctccaggtgtattgagaatctaggcca<br>ctcgtaggcagtcattacttggaaatggttcaccctttagttttccttttagtaggaatactccagggagataacttgaaagttatgttgccatatctaa<br>atttaaaactgctgaggatagagctatagcagaaagatgtaggaaataaaatctactttccatggaatacagtatccttgtgttatcat<font color="green"><u>AAAACCGTAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAACA</font><font color="green"><u>AAAAACGTAAC</u></font>agttgacatgctttgttcaacaaccatgtagaaaaacctgaaaagatttatgagtttggcagttgattttggc<br>cttcaatgtcatttgattatcatgtttccccttgatcttgttttcctgaaaaagtactcaaggcttaattcctcaatccagaaaaatgcttctttaaaat<br>gtaaaatatgagttgcagaagacagagaacaaacctcgcacattagtaaactatccctcctccctcatggaagaattgattaaaagatgaaaacccacca<br>caagatttccagataggcaaggaggcccatttgccccagctgcctggagacattttaacagcagggactttgagcttttaatgaaaatcaggttgaacag<br>tgtggaatcaggaagc	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	491	164	NA	intron:NXPH1:NM:152745:2/3
0	chr7	125265111	125265426	1000800	0	-	pAlu7-124805708;Yb8NBC241; RIP_Alu_chr7_124_02	GGACTGTGTCTAAGGGTGTCCT	GGTAATTGGGAGCAGTTGAGA	SINE	Alu	Yb8	tttttcactgattacttgattcccttaagtctaattttaatgatggcccttcagatatctggacacttgagtacccatttagtcaatatagcctccctca<br>ctacttaataaaagttacgctatgcatagatggccttcagcaaaatggtcatgcattgggcattctgatttctagtttattatgtcactaatagtctttt<br>atattgatcataatactctgacatcccttcattattttgtaattgttttgctgttgaggtgctgaaggtttgaatttctcatatcaaaacatcatgtata<br>aaaatagtaatggaaggtaagagtgaaataggtaattgggagcagttgagataaaatattgtggggaaaccctaaggaatttgac<font color="green"><u>AAGAAAGTCAAGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAACAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTCAAGTTA</u></font>aaggacacccttagacacagtccaatgagataaattggtagcacctgtattgcgtttgtgagcgagtaa<br>ccaaaggaaatgatttatataaaattgttacaggaaaatggctctctaataatcacgttcaccttaaaataactccctgactactcgtctaagtttctca<br>aatttcaccactgactcaaatttttttttcttctagaattattagttaaataaaaggtaacatcagcttttagtagtgtgtgatttaatgtgattaattg<br>agagtaagaatattaataaaacatttcaacttatttcctgatatgcacacaataaaatatgattatgatgtggacattaactttggatgacttaacttgt<br>attaaaagaataaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	424	93	NA	intergenic
0	chrX	76090603	76090881	1000801	0	+	Yb8NBC133; RIP_Alu_chrX_075_01	GCCATTGATCCCACAGAAAT	GCTGTGAATTCGTTGGTCCT	SINE	Alu	Yb8	agaattagaaaaacaaattcaaaagctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacagcaaagacccttcaaaaaa<br>tcaatcaatccaggagctgcttttttgacaaaaaaaaataataacaaaatagacagattactgctagaataataaagaagaaaagagagaagaataaata<br>cacacaataaaaatgataaaagggatattgccattgatcccacagaaatacaaactaccatcagagaataccataaacacctctatgaaaataaactagg<br>aaatctaaaataaatggataaattcctggacacataacccttgtaagaaataaccagaaagaagtcaaattcctgaatagaccaat<font color="green"><u>AAAAAGTTCTGAAA<br></u></font><font color="red">ATTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTCT<br>GAAA</u></font>ttgagacagtaattattagcctaccaaccaaaaaaagcccaggaccaacgaattcacagctgaattctaccagaggtataaagacgaaatgatgcc<br>attccttttcaaactattccaaacaacagaaaaagagagactcttccctaactcattttatgaggccagcatcttcctgataccaaaacctggcaatgac<br>acaacaaagaaaaaaatttcaggccaatatccctaatgaacattgatgcaaaaatcctcaataaaatactggcaaaccaaatccagcagcacaacaaaaa<br>gcttattcaccacgatcaagtcggtttcatccctgggatgcaaggctggttcaacatatgcacatcaataaatgtaatccataacataaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr22	30993869	30994095	1000802	0	-	Ya5NBC223; RIP_Alu_chr22_029_01	GTTCTCTGTAAAATGGACCAATCAG	CATAGACCTTCCCAGTGAGTGTTAC	SINE	Alu	Ya5	tgcagcgaccggagattgttaccactgcactccaacctactaaacagagtgaaaaaataatttttttttttacgggttttaccttagagctctaatcctg<br>gcatagtactgtgtccggaattggtgggttcttggtctcactgacttcaagaatgaagctgccaaccttcaaggtgagtgttacagttcttaaagacggc<br>atgtccggagtttgttccttctgatgctcggatgttttcggagtttttttccttttggtgggttcgtggtctcgctggttgcagcagtgaagccatagac<br>cttcccagtgagtgttacagcttataaacgcagtgtacacccaaaaagtgagcagcagtaagagttattgcaaacagtgaaagaat<font color="green"><u>AAAACTTCAACTGC<br></u></font><font color="red">GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATGCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACT<br>CCGACTCAAAACAAAAAAAAAAAAAAC</font><font color="green"><u>AAAACTTCAACTGC</u></font>gtggaaaaaaaaccgagcgagttaccacagctgagtcgggcagcctgcttttattctct<br>tatctggccccacccacatactgctgattggtccattttacagagaacggattggtctgttttacagagtgctgattggtccgttttgacagggtgctga<br>ttggtgtgtttacaatccctgtgctagacacaaaagttctccaggaccccactagattagctagatacagagtgctaattggtgtatttacaaaccctga<br>gctagacacagggtgctgattggtgcatttacataccttgagctagatatagagtgtcgattggtgtattcactatcccttagctagacataaatgttct<br>ccaagtccccacaagatcagctagaca	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	455	214	NA	intergenic
0	chrX	106744589	106744763	1000803	0	-	Yb8NBC102; RIP_Alu_chrX_106_02	GCCTGCAGAATGGAAGAAAC	CCAACTGAGTCCCCAGAAAA	SINE	Alu	Yb8	tcctcaaaatcaccagaggatatgaggcaggagtgattcctgatccctgtggaatgagtgaggaaactgaggcttggagaggtgagaaggcttttttgca<br>tggatagctactgtgtgatgtccaagctggcctagaagcacagctcattcccatggcaccccacacgcttatgtcattcatcttctgcactgcccctttg<br>aggccccaactgagtccccagaaaagtgtacatacgcacacagacacatatatattttgcttactattgtgtaagcagtcataaaacctctgagggtcag<br>gcccctatgtcagtattttttacaagctgtccaggtgattctaaggtgcagccaggggtgagcaccactgcctgaaaagaagatat<font color="green"><u>AAAAATAGGAGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAGGAGACA</u></font>agagaattggc<br>tttagtggccaagagctttctttaaaaacctttggcctccccaataggaactgaaggtagagtggatgtgaactatggccctagcttccatgcctcagtt<br>tcttccattctgcaggcctttgcaatccttcccccatgctgtggactagcttaataaattagacatcactgaggttgctgtgggaaggggtataaagaaa<br>gaaacacatctctctccccatatgcacatgcttgccaattgctgtgtaagtgtatctttaatattttctgcctgcaagggtggagctaaattgccctgat<br>taaggaagccatggggtctaactagaggtgaaggatagatatttgctgtcaatcaactagaaagaggtgctcctc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	85541123	85541411	1000804	0	-	Yb8NBC30; RIP_Alu_chrX_085_01	TTGCCTTGGATGGCATATCT	AAATGGCCGGAGTAAGTCCT	SINE	Alu	Yb8	tagaaacaactaaaagtttaaaagttggagaatgaagctaaggcataaagttattgttgtttcctttttgcttgtttgtttgtttgcaagtttacgcaaa<br>cagtgtaagttgtcatgagcttaaaacaatggtttataaaataaaatttgcaattcccatgttaaccttaaagcaaaaaaatacaaggggtccaaaatat<br>atatataaagcaagaaactaaacagtatcaccagaggaaaccaccttctctaaaaggaacacaggaagggaaaaaatgaaggaggagaataccacaaact<br>accaaaaatcaaacaacaaaatggccggagtaagtccttacttaacaataataacaatgaatgtaaatagactaaactctccaatc<font color="green"><u>AAAACAGACTGGCT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCTAGACCAACCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA<br>AAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC<br>TTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGATCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACAGACTG<br>GCT</u></font>gaatggatggaagaacaagaaccattgatttgttgcctacaagaaacacacttcacctataaagacacatatagactgaaaataaaggaaaaagata<br>tgccatccaaggcaaacaaaaaagagcatgagtacctacatttatatcagaaaaactagatttcaagaaaaaaaactatgagacaaagaaggtcattatg<br>taatgataaaggagtcaattcagcaagaaaatacaatttaaatatatatacacccaacactggagcaccgaaatgtataaagaaaatattattaaagcta<br>aagagaggtgagaccccaatacagtaataattggagacttcaataccccactttcagcattggacagatctttcagacagaatatcaac	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:DACH2:NM:001139515:1/12
0	chrX	140217337	140217655	1000805	0	+	Yb8NBC8; RIP_Alu_chrX_139_01	AAGAAAACTGATGGGGAAAG	CCAACTAGAGAAACGGAGAA	SINE	Alu	Yb8	attatatatttgttggcttctgatttggaagctatgtgaaggcagaaacatttggttagttttattcactgcaaaatcacccagtgcctagaagagtact<br>tcacaagtgggaatctctcatgaaacacttgttgagtgattgtgtgactgattgtggactaacttatactaaaagtgaaaataaataaaatattagctct<br>taaggcaaaaagatgttcaggcaaggagtgccgagtgaatctgagcacggagctattgcagccaactagagaaacggagaaacttggaagcttggaagtt<br>atagataaggaaataccaaagaagagtttgaagattacagattaatccagtatcttaggactagaagagaatgtgaatatttgtctt<font color="green"><u>AAGAAGAGATGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAGATGGT</u></font>gagtgggaaagtgatgtaattagatatgttccatgcatatcataattattgtatgtaattattggtat<br>tagtgccttaatttactctttgataggcctaggttctaccctttccccatcagttttcttctgagttcccaatctactaggtagttgaacaggtaaaatc<br>tgtttatttaacttcatattaatctattcctatgtaatgtgtatatgtatcatgtgtgtatatattatataatctatatgtatacatttctactaagctt<br>atgttcaatgttagcagtagtttctttttctccagtccttaataaagtaattaatattctgatgaaaacagagttaagatacttatgttaggctgggcgt<br>ggtggctcacgcctgtaat	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrX	151917508	151917828	1000806	0	-	pAluX-149665515;pAluX-149635670;Ya5NBC131; RIP_Alu_chrX_151_01	CCCAAGATCTAGGTGATGGACAC	GCACTTGAGATAACCTAGTTAGAATGC	SINE	Alu	Ya5	cgaacactgggattttgttgttgttgtcgttgttctccaggacttatcagagaacatacagctcaataggacatggaataattagccccaaacagaagct<br>tcttccataaaattcagttaagtatttcctcttagagaatgcacttcaaaatttggttgtgcgggagttttgcccagccaggtgcagctcaaagctccta<br>gaatgtgagtcaaagaccaactccttccctctctcccagctgctttcccatccaaaccactatattcatccactttgttaccatccagaatctagcccgt<br>gcttacaattggtcaaattgcacttgagataacctagttagaatgcctttttaatggagtcagctctggctctccctgcctggc<font color="green"><u>AGAAAAGCACCTGGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCTGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAGCACCTGGCC</u></font>agtggcttctgggtcacccttcctgggaaattcagccttatcgctcaggaaacccttgcagat<br>gatgggtgtccatcacctagatcttgggctgtgttcaacagcattgggcaaaaacacaggacaccttccattccagccccaggtggagattcctctctct<br>tcatccccatcctaaagaaactgctcagggtagcattccattccaggcttttctctcaccctctgagaatctggccctggacccaccgggcatcattaga<br>atcagctccttcagaaggaactgcaggttcccagatcccaaattgccccagctcagggcatttatactcaccactctcacctggaaccccacaccctcac<br>ccctgtcttacatttccacta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	26983810	26984149	1000807	0	-	Yb8NBC108; RIP_Alu_chrY_025_01	TGTCACTTGATTGTCCGCATA	TCAATGGCATCCTGAAAACA	SINE	Alu	Yb8	cctgcttaactggaatcgtacatataaaattcactgaatctctctaatagcgtcataatactttaaatgaaggaagtaatgatcatgtcctagtcctcag<br>ccagcaggtggcgctcaaagctaacaaggtaagcaatgtacctcgttttctgcaacgtacttcacttttaccatggctcgagtagcagggattgttcaat<br>tccgactgtgtacttatacataattatataatgtatatataaaaatccacaatcaacagacaaactttggttagttttaaactacggccaaaaatataaa<br>tgaatgcttcggataagcaaaagtttagtttgaaagaaagtaccatcgtaaccgtcaatggcatcctgaaaacaaactgcatta<font color="green"><u>AAGAAGTAATTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA<br>TAAAATAAAACAAACAAACAAACAAAAAAACACAAAACAC</font><font color="green"><u>AAGAAGTAATTTTCTT</u></font>aaccgtatcttcaagtgagttgttgaattttcaaatgagaaatg<br>ttgcaatagtaaacaggggtgagcttcaagaccgtcataatcacaactctcattgctatttctagcaaacatattccttgttatatgcggacaatcaagt<br>gacaaagacagctaaaagctggaaaaaattatcattaaactcctgccatgtcagctcctctgccagtattatctaatgcaattactatgtgaacatgtaa<br>gcaaattgttatttacataaactggccaggaaaaagcctatcatttgtagtcatcaaagttacattcacagcaataggaagaggagcaaataaagagaat<br>gctaaaattaagaaaatatgacgtgaaaatcagaagttaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	15881787	15882097	1000808	0	+	Yb8NBC109; RIP_Alu_chrY_014_01	GTGCAACTTCAGTTTCTGCTAAGAT	CATGGTTATCTGCAAAGACTATGAC	SINE	Alu	Yb8	gtttagagagcagtctttgtgagattcaaatagatcttacaccttgccagagactgaaatgcccattgatgaaaatactttgcacagaaggactgctgct<br>gaggtggaagttctcagagagctctggaatcctatttggctcatgtgattaactgtaaagtcagaatttcaaaagccctcaataaatatataacacaaac<br>aatggttttcaatcatttgtgcataagagcagccattaggtactacctttcctaaggtgagtaaggttaaatcctgaagtagctaagaaacgttgcaagt<br>catggttttaactgtctgtgcaacttcagtttctgctaagatttttcttgatgaattttcagttatatttatttataaaaaatcctatatt<font color="green"><u>AAGAATCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAATCCA</u></font>acagctacaacagttaaggaaataaaagaactaagactacaaaactcttctagtcattacgtatcacctaaagtacacta<br>tagccagttgtaaatttccatcatgtcatagtctttgcagataaccatggtgaagaatgtccctggaggtgaaggtggcaagtaagctgtaatctcacca<br>ctgcactccagcctcggcgacagagtgagaccctgtctaaaaaaatattaataataatagtaatgtcattcagagtcatgtaaaattgttttctttctgt<br>gttggtcttgcatttttttcttctttgaagatgattttctttgtttttttttttttcagactttttgtctttattagtggttgacaggggctggggaggg<br>aggaatgaaaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	15683341	15683645	1000809	0	+	Yb8NBC110; RIP_Alu_chrY_014_02	AATAGGCTGAATGCCCCAAT	CTAGCATTGCAATCCCTGCTTT	SINE	Alu	Yb8	tctcactctttgctagcacagcagtctgagatcagattgcaaggcagcagtgaggctgggggaggggcgccagccattgctgagttagttgtttgattag<br>gtaaacaaagtggctgggaagctccaactgggtggagcttcaggaacttggaagagttcctgaaggaagcactaaatatggaaaggaaaaatttttacca<br>gccactacaaaaacacactgaagcacacagacaaatgacactatgaaaaaactacatcatcacggctgcaaaattaaccagctaacatcatgaagccagg<br>atcaaattcacatgtaacaatattaaccttaaatgtaaataggctgaatgccccaattaaaatgcacagactgacaagctagat<font color="green"><u>AAAAAGATAAGACCCG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAAATAAGACCCA</u></font>ttagtgtgccatattcaagagacacatctcatgtgtaaagacacacacagattcaaaataaaggcatggaggaaaattt<br>tccaagcaaatggaaagtagaaaaagcagggattgcaatgctagtttctgacaaacacaacttaaaccaacaaaggtcaaaaaagacaaagaagagcatt<br>acataaagttaaaggtttcattcaacaagaaaaactaactatcctgagtacacatgcagcaaatacaggagcacccagattcacaaaatgagttattaag<br>acctacaaagagacttagacatctcccaagaaataatagtgggagactgtagtagcccgctgtcaatattacacctttcagacagaaaattaacaaagat<br>attca	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	7270273	7270590	1000810	0	-	Yb8NBC160; RIP_Alu_chrY_007_01	CCACACATGGGTACCAGTCC	TTGCTTACCCACAGTCACCTC	SINE	Alu	Yb8	aattcattcaattcattatggcatgctctctctcttacactaaattttttttttaaaggtagagatacaattattatcttcttccagcaatagagacttt<br>ggcagtatatagtttaggcacaggctcagccacaatgacatcatctaagatcagaaagagaacagaaagaaaaggagccactgcagagtgcactaagtta<br>gggcagagtcaaccctactacacctgcaacccacagcctctcctctgtgggactcactgcttcctcccctccatctctctagtgcatgaaccacatctct<br>aataaacacacgactctttctctcctgccccacatcagggatccccaagccctaggccacacatgggtaccagtccctggcctgtt<font color="green"><u>AGAAACTGGGCTGC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCAAGTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAGAAA</font><font color="green"><u>AGAAACTGGGCTGC</u></font>ataataggaggtgactgtgggtaagcaaacaaagcttcatctccccattgcttgcctgagctccccat<br>tactgcctgagctctgcctcctgtcagatccgtggcagaattagattcccataggaactcaaaccctattgtgaactccacatgcaagggatctaggttg<br>cactctccttataagaatctaatgcctggtgatctgttactgtctcccatcaccatcagataggactgtctagttgcaggaaaacaagctcagggctccc<br>actgattctacatgatgctgtgttacataattatttcataggtagtatgacataataatagaaatacagccagatgtagtggcttatgcctgtaatctca<br>gcactctgggaggctgag	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	5943996	5944310	1000811	0	+	Yb8NBC268; RIP_Alu_chrY_005_01	TGGGGATAGAGGAAGAAGACAA	CCTTTTCATCCAACTACCACTG	SINE	Alu	Yb8	taagaactacttactacttcatattagaactactactgtacaaccaaaccccttcaaagagaaagagcctgtaagagtttgtaagagcaaataaagatat<br>ataaaaattatattctattttttcttaaaaaaataagtgtgtaaataattatatattttgcctactcagttgttccaattaagcctttcaaacagaactt<br>cttcaactaggttctatagatgagtttcaagaagtcctagccgatgaaaattatatgcaacaatttgtatataggtgcaaaattacatgtatttgatggg<br>gatagaggaagaagacaaaactttatcagatttccagagggagccatgactcaataaagtttaagggattgaggactaagaatttt<font color="green"><u>AAAACTGGTAGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAACAA<br>ACAAACAAACAAACA</font><font color="green"><u>AAAACTGGTAGACA</u></font>agagatgcgaaagaagactgttgaaataatccaaatagtaagtaataaggctgataatatgtcagtggtag<br>ttggatgaaaaggttagatttgagaaatatttctgaagtagctgctttatctcaagtaccctaggaaacagtgtctgagatagaaatttgcattcaaaag<br>attgttgaggagagctcttggaaccaaccctgtaaggccctgaaggaagcaggactgggtagaaggcgaaataaaactgcaatgcttttataacagaggc<br>ctcagcgcatcttaaaagcagctctgagcttggtgtggcccctcagaaatgtgtggcactgaggcaatagagcgaggccttttcattcctgcattgacct<br>gtgagaagatgcaaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	15815101	15815389	1000812	0	+	Ya5NBC154; RIP_Alu_chrY_014_03	AAACACCCTAGATGCTGGGTAA	AGATGAGTGAGCCTCAGAACAAAG	SINE	Alu	Ya5	taagcgggcctgtgggtgacatcaactcatttacataggagggctataaagtagcgcctgcccatcccgtcctggcaactccgcggtggacactgtgtag<br>actagatttcactcccttacgcgcctggcttaggtaagccccagggcccctgcatccttactccttctaccctccccttcatgccgcgcttgccccttca<br>ttattcgcgtccctgtgaagacatcccctaaagccaagccgagtgattatccccgggaaagctgccttggggaggtggggatgcgaaacaccctagatgc<br>tgggtaatgcggtggggaaatcgatgatttaagaacaaagcaaataaaccggcgtttatgtactgccgctcggagggttcgtgtt<font color="green"><u>AAAATTTCTTAGTGT<br></u></font><font color="red">GCCGAGGCGGGCGGATCACGAGGTCAGGAGATGAAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTA<br>GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAAATCCCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAGTCTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTCTTA<br>GTGT</u></font>ttgctctcaaaggtattgtgcgttgtcttggaggctgagatgtgggaacagacagatcctttgttctgaggctcactcatctcccgagccccgagc<br>cgtctcccagcctcagacggctctgcgggctgcatctgtgcagcctggcagcggcggcgctgcgctgtgacattttcacagcccttcttgcagaggcatg<br>tgtgctagggatgccgaaatgccgagagcgccggcaggactagcttccgggccgcgctttgtgtgctgggctgcagtgtggcgcgggcgaggaagctggt<br>agggcggttgtcgcaagctccagctgcagcctccgcctacgtgagaagactagaaagcgggcgcaggaccaggcctgcgttgtttgcag	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	promoter:TMSB4Y:NM:004202
0	chrY	15140893	15141199	1000813	0	-	Ya5NBC155; RIP_Alu_chrY_013_01	TGTCAATATCAGACAGATCCATGAG	ACTTCCAACTATGTGGTCAGTTTTG	SINE	Alu	Ya5	caagacccatcagtgtgctttattcaggagacccatctcatgtgcagagatacacataggctcaaaataaagggatggaggaagatctaccaagcaaatg<br>gaaaacaaaacaaaacaaaaaagcagggattgcaatcctagtctctgacagaacagactttaaaccaacaaagatcagaagaaacaaagaaggccattac<br>ataatggtaaagggatcaattaaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcagcaagattcataaggcaagtccttaaag<br>acctacaaagacacttagactcccacacaataataatgggagactttcacaccccactgtcaatatcagacagatccatgagac<font color="green"><u>AGAAAGTTAACAAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAA<br>AAAAAAA</font><font color="green"><u>AGAAAGTTAACAAGGA</u></font>tatccaggaattgaattcagctctgcaccaagcagacctaatagacatctacagaactctccaccccaaatcaacag<br>aatatacattcttctcagcaccacatcacacttattccaaaactgaccacatagttggaagtaaagtcctcctcagcaaatgtaaaaaaacagaaatgat<br>atatttatattattctaaatgtttcttggtgcctatttttttttctaattttttggttgttcagtttggacaattcttattttcaaatgtattggttttt<br>tgtgttatctccttataccatggagcttcttccaccaaatatactggtgttgttgtcatttactctgaaatgctcaaaatactcttgattgtcatgagtt<br>gatttta	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	17843092	17843389	1000814	0	-	Ya5NBC174; RIP_Alu_chrY_016_01	TCACTCTTTGTCTTGCTGACTACAG	GCTATAGCTTCTATTTACGGGGAAT	SINE	Alu	Ya5	tgggcaccactgagatatagcaaattgcacagagaaaagctcctattcagctgtgtatagtttccctgaatctcatctttccccaaaaccatctgataaa<br>ttaccttccaattgattaaatttcctctaggaaggtactatatacatcaacctcagaccttgtttctatacaaaatcaactgttaccatggctgactgtt<br>cacttcctgaatggctgttaaaatggctaactattcactgcctacttcaacttcctgagttttacacccatgctcactctttgtcttgctgactacagct<br>tctgctacaactatttagatataccagagaaaacaacaacaattgacaagactggagcttcggcaaaagtggtcgcacacattaaaaag<font color="green"><u>TGAATTTTTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCAAGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTGTACTAAAAATACAAAAAATTATCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TG<br>AATTTTTAG</u></font>taaaaacaaacaaacatcaaacattagtcttttattctttgagaacttaactgcgattattctctattccccgtaaatagaagctatagcg<br>caatatgaaaattagtccatttcaaaaataactatagtgaagcattcagcctgtacactatatacatctgtatcaaaaacaatgtaaagtttgtggaaat<br>aaataaagacttccttcctctttcacaaatgagagcaaacagagactttttagtgagagcttgctccaacaagggagtctggcgctatcacttgcattta<br>ggaaagactcaaaggccagtggaaatactttatggtgaaaacatgttacaggtagttaggcatgagctggacaggagaggactctccctgccacctac	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	4546820	4546821	1000815	0	-	Ya5NBC313; RIP_Alu_chrY_004_01	CACTTGCCATTGACTCCAAA	GGCTGGGTTGTGTGAGTTCT	SINE	Alu	Ya5	aggcctaaagctgaagtaaacagtggtgctaaatatctcacattctaaagcagtggtttttataactttatcgtgtgtcagaatcaccttcagggactgc<br>caaaatacacattgcttggccccacctctaggtcctaattcagtacatctgaagagaagcctgagagttggaatttcccacaagtttataagttatgcta<br>ataatgctgttccagaaacacactttaagaaccactgcgataaagagagctaaatacatttctcagggcttaagagttgaccaagcctgctatactacca<br>cttgccattgactccaaattctgtcttcgcaatttgtataagaaaaattagaacaggagaaataaatagttgttagattcaatagctttt<font color="green"><u>AAGAAGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAGTGTC</u></font>aaggtgattgtgaaaaccatttctgttcttattctggctataggtccatctaagaactcacacaacccagccagccttttcatgcctaccaaa<br>cacaggttattaatgattgatgttagacacaaaagtattgacaatccacagataaatgactacaatagtaccggatatctcttccttttccttccatcct<br>tcatatttctgcacacaggagaaacttagtcttaatgagggaaaggttgcctcaggtccggatggcagttcaagcttgtgatttcagggtggtggggagg<br>agatgagattaaagtgtggcattcacaagtctctcaatctgttacctgttctgtaaaatggagataattgtaaattatgtggccattgaaaagttta	Other	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chrY	3394333	3394639	1000816	0	-	Ya5NBC325; RIP_Alu_chrY_003_01	CTTCTCTCTCTGAAATGCCAAT	CAGTTGAAAGGTTTGACAATACACC	SINE	Alu	Ya5	aatgccagcctttgcagatgaggaatcagtgtaaatcctggcatcatgaaaaaactgaatattgtgagaccaccaaaggataacactagatctctagcaa<br>tggatcctaaccaaaccggatattcagaaatgatagatgaagaatacaaagtatggattgtgaggaaactcaaagaaatccaagagaaggtttaaaatca<br>gcacatagaaacaaaagcaatctgagaaatagaagagataaatatatttaaaaatcaaacagaatttttggaaatgaaagaatcacttatgtaatttgga<br>actacagttgaaaggtttgacaatacaccatattaagcataagaatttcagaacttgaagatgggtaattcaactaagtcagataaaaat<font color="green"><u>AAAGAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAGAAAA</font><font color="green"><u>AAAGAAACAA</u></font>atgtaaaagaataaacaaaaccttcaagaaatatgggattatgtaaagcaaccaaacctgtaatatattggcatttcagagag<br>agaagaagaaaaattaggcaggctagacaacatatgtgagagaataattcataaaaattgccataatcttgctagagaggtagacatctaagtacaagaa<br>atccacagaatgccttcaagaggctatacaaaacaaacattatcaaggaatatagtcactgtattattcaaggtaaacactaaatttaaaaatcttaaag<br>gcagctagagaaaagggttaaatcacttataaaggaaaatcgattagactaacaacatacttttaagtagaaaccttacatgccaaaagatattggggag<br>ctatttt	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr1	190861766	190862062	1000817	0	-	Yb8AC1011; RIP_Alu_chr1_187_01	GCCTCTTTTCCTGCTTGAGA	TCTTGGCTGGTGTTACATGC	SINE	Alu	Yb8	tgactttgctcagtgtatgaccccaggcatgaatcatgatttttttaaactaaccatgacactcttatcccttctgtcatattggtaacattcccaacct<br>cttctgcagccatagatgtccaattgagcatgctctaaccaatgcagtgtaaaagcttcaatgcttgtgtgcctcaggggatgaaaaatgcttcctaaaa<br>aaaatgtgagaggcaatcagagaatggaaaagctcttactcatgtgcctcttttcctgcttgagacgtttgattgtgagaagttgaagttattctataac<br>tttcatgagactgtatttcctggacattggaatccaaagcaagggactacagagtaattcgacagagcatacttgagaatcaaat<font color="green"><u>AAAAAACGTGGCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGCGGAGCTTGCAGTGAGCCAAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAA<br>AAACGTGGCATG</u></font>taacaccagccaagatttgaatttgaacaggttattttacctgattttgtcatctgtaattaaataaacctaaaagagtgaatacttt<br>gagaacaaatcaaatagatgtgccactatatgttaaaaaatacaaagattactagttaacagttcatcatatggaatttaacgcaaatatcttgtggcta<br>ctttaatttgaaatatgtataatttgaactggatatatttgtatgaaaaatatacaatgtactttcagaagacgcactacacttgttcaaacattataaa<br>cactatatgtgtgtgtgtatatatatatatttgtttctaaatgtatgagaaagtttaaagaacatcgtaacaaaataaacaaaaaagcttaaatgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	482	170	NA	intergenic
0	chr3	31719293	31719598	1000818	0	+	Yb8AC1152; RIP_Alu_chr3_031_01	GCCTGCTGCCTATGAGAAAC	CTTTTAGCCCTCTGTCCCCT	SINE	Alu	Yb8	ggccatgcccaggcccacccacagcaggaaaacatcaggtgagtggccaggaagggccatgtccaggagaggcctttcacagtctctctccagaatcttc<br>tttctgaactcagcatgctattgagaaattctgagtggcattttcaagcagttagaaaaagtgagagcaacaaattctaattctgcttcatctgcaggct<br>gcatctgagggcctcaggagagggtgttccacggcttctcacccacgacactgtggtcctgggctgggtaaagtgaatcaagggctccagcctctgcctg<br>ctgcctatgagaaacagaggagctatgatcctgagacctcacaggcctaccctgtggagacacggacactcaacaacggccaacat<font color="green"><u>AAGACAGAGCAAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGACAGAGCAAAG</u></font>atgttggttagttcaggggacagagggctaaaaggacctcatcactctctcaagttcagctgcagaggcaatgacaggag<br>gccatgtgctgtgctgggctgaggggtgccccgttgacggtgtggcttaagtgaaacggctagagacaccagagggagacaggaaggacaagggtgcagg<br>gaagcagagggaagaagatgatgatgaacatgctgtgtagagggaagaagggaaagatgaacacattgtgtggggaagagagaataaccagctttaaaac<br>acaatcacacacgtgacaccactgcacagccacctccttgtcggagcccaccgctggtggtcggggacaggggaaaagtgactgctatttggtagagaag<br>gaagga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	459	139	NA	intron:OSBPL10:NM:017784:9/13
0	chr5	18765062	18765382	1000819	0	+	Yb8NBC505; RIP_Alu_chr5_018_01	TGAGCCTATGACTGAGCATGA	GGGGCTCTCATCAGCATTTA	SINE	Alu	Yb8	atattagatcctaaaactaaataggttagtgttttttttttctgaactgaaatagattaacagaatatattaactgaagtaactttgtcctattatttat<br>aattcttattagacacatgtaattgagcctatgactgagcatgaagactctataaaggacatcgatcaagtatacaatataattttctttaattttgatc<br>tgaaagacttaatagaaagactgaaatcctgttaaaaaattgattacatttctactggatttgggaaatatgtagcatcagtaataaagtacttaatgat<br>catttattgtgtttggtgtatgatttattatatccccattttttataaccctcaaagtatttgcaaaattaatagaactttctt<font color="green"><u>AAGAATATAGTGACTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGTCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATAGTGACTG</u></font>tcctcaaaatccacttaataagttgatagcctcaaatttatatttcacctactcctccaaaat<br>aattatctgtaaatcacagaattcaaggaaagagatggcttacaaaaggaagtatgacttctcatgttaaatgctgatgagagccccggtaaagttatga<br>gtggttgtatataagtaacactcttagaaatcatgattttcataaaatgtcacttcagcaaaatgaccgggtcaaaatcaatgtggaaaaaatgggtttt<br>ataggttgacaaatctgttggtttgtttactgaatttttaaattaggtagctactctagttttccttattcatatattcatattacactatgtgtcaggc<br>agctattttggtgtggcatat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	764	427	NA	intergenic
0	chr6	98691214	98691529	1000820	0	+	Yb8JW830; RIP_Alu_chr6_098_01	CTTTGCTGTGCCAGGAATTT	TAGCATAGTCTCTGGCATTTTGG	SINE	Alu	Yb8	tcagtcctctgggctgaaacgaggaccagataatattttagcaaaaaaggtgttttgttttcacgctttcatcatgcaaaaataacccaactaatttagc<br>cctaacttccaaaaaatattcagttttatgcagaaatcaactatgtagatctcaggccaaaaggaatatttatcagaaaactctgaagcaaagactttta<br>taaaaatatactcttccataaagttttattttcagtcatctttgacatgatgtaaatgaattactgcattattgcttcctagttatctcttatctttgct<br>gtgccaggaatttgtgagttttttaatataaattttgatcatttaaaattataaacccctggggtcaggcttaaatattgtaattttaaaat<font color="green"><u>AATTATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATTATGA</u></font>aatataatagcatttcacatttttggtgctcccaaaatgccagagactatgctaaatactgtgtatatatcatctc<br>ttttaagtgtaccacaatctggagagggaagtataattgttatctccaatttgtaggtaaagagactagcccttaatgggattaaataatttgtactaag<br>taatactaagcaactgtatttactgggtgatggagtcacgattcccctaccccatgcctctctgactccatactccacttgaaagtagcatcctctttta<br>gaacagccccaatatagccctaatcaatatagttatagacgcttccccagaacagacagaaaaatagtcagcaggttcatgaaaaatgttaaacattact<br>aatcatcaggaaaatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	485	161	NA	intergenic
0	chr8	138909171	138909375	1000821	0	-	Yb8AC1439; RIP_Alu_chr8_138_01	TTCAATCAAGGAGGGTTTGC	AAGTGAGCCAGGTTCTGTGC	SINE	Alu	Yb8	ctttcatctctgagatctcaatttgtagtcactaacattataatttcatgactttcatgtcataaaatagcaggtacatttgagaagtagggttcaatgt<br>gatttactatggacctggccatttatatagcattttatatttcataaatccctcccacataaacctcattatcagatctttgtcatgcttgtgagtatca<br>tcctttgtgttgtaaagggacataaaatgattttaatgagacccaccacgtgctgagctccatgctattcaatcaaggagggtttgcatcatacctactt<br>agattcccgtcttagccctgccagttaacagctctgccattactttccctttgagagatgcaataaactggggataatcatatatacgtc<font color="green"><u>AAGAGCTGGT<br></u></font><font color="red">ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAGCTGGT</u></font>gagcagatacgtaagacgaatgagtccttgtagcacagaacctggctcacttattcactctatcaataaatatttattatcttag<br>tttgtaagcaattgaacaaggtgattgtaggctatgaaataatagacttctgtaagctttcagggtttgtttgtttatttctttgtaaatacaagtcatc<br>taagaagtaagagataaagtggtctgtggaacaaaagtgtggaagggtgttttggtgtgggcacagagtgtgtgggtctttgtgttttgcattgatgcca<br>accagagagaatgtgccacagatgaggaactgaaacacctgtaggacaggtgcacatcccactggatgttgaccccctttgtgtttggcaacccctgttg<br>ttatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	400	185	NA	NA	intergenic
0	chr9	25977741	25978048	1000822	0	-	Yb8NBC522; RIP_Alu_chr9_025_01	TTCTGAAACCTCTCTGTCCTACAA	GAGCCAGGAACAAATGAGGA	SINE	Alu	Yb8	gacggtggagcatcaatgggttgaaagaaaataaacttgagcataaactttatatttagttaaaatacactttagaaatgaagttgaaacaaatttatat<br>attttacataaatccatactaaaagagttcgctaccagaagatcagcagagagaaaaatttcgtaagtgaattggagagccaggaacaaatgaggaatat<br>cttatacatcctttttcgttcattattttcatattctagttcacaaacttagtttaaatgttaactactttaacttgatatatagaatatttgtctgttg<br>tttttggcatagaaaatgcatatttatctgaaaaagttaacaaaaaataaaaactgtgtttatgattgagcaaatcaatttgtattttcatt<font color="green"><u>AAAAATGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATGT</u></font>aaatgaattataaaaaattcttattcatagttgtaggacagagaggtttcagaatttacttttcactttactacatcattacat<br>gttcttagttttaaaatttcttgaaatgtatctgaccaaaatgtaaagctgatttattttatgcaatttacaactctttagtttgagtttcaacagttaa<br>cataaaactgcatgtgtatattttatgtgtcaataggcatgaaaattatttcagtggatagaaggcattttttcatatttggatcacctacggaatgggg<br>gtttctaagctaagctaaattcatatcaatctgaacagctaaaaattcaggtaattcaggagattccattatgtatgtgaatttagaataccaaaaaatt<br>taaactgt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	594	278	NA	intergenic
0	chr9	3078466	3078775	1000823	0	+	Yb8NBC585; RIP_Alu_chr9_003_01	CATTGGGTTTAACATTCGCTCT	CACGTGTGCAGCAATGTATG	SINE	Alu	Yb8	taatatctctctgtatcatggcctctttaaaaaaaaaaaaaaggatgagtaggtacagggagaggcgaaggatttggttgttgtggggaaagggaaatta<br>ggcaatttgcttattagcttatttgcttcttattcatttattaattcaagaggatgaatatataaatgcttcataaaattcaaaaggtagaaaagaatat<br>gcagtgaaagtaagtctccctcatgcttttgacccccagtctccaattcctctctccaaaggtgaccactgttaccagttgtgtacccttctagagatac<br>tttatacacataccaatccatgtttggctatattgacattgggtttaacattcgctctatccaatgtcttgctgtatatcatctt<font color="green"><u>AAAAAGCATATCCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGGGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAGCATATCCTG</u></font>ggttctgcaccttgaattttttaaatgtaacaatatatcttggcaattattccatgtcagtacatatagcagtgt<br>ttcatcctttccaatggctgtatggtattccctcatatgactgtatcaggtttttttcataccacttgctattacaaaaaaactgcaatgaactcatgtt<br>acatacattgctgcacacgtgcgtaagtgcacatgccttttctctcctctctggcttattttactttcctttaatctctggtttctgtgattatgctata<br>ttatatcttggagtttatatctttttggtttgttctgcttagaattcattgggtctattgagtcaaagattcacctttcagaagttactgaaaattatta<br>gctctttatc	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	585	260	NA	intergenic
0	chr12	1352072	1352383	1000824	0	+	Yb8NBC3; RIP_Alu_chr12_001_01	AGATGCGCAAGTCCCTGATA	ATTTTTGGATTCAGCCAACG	SINE	Alu	Yb8	aaacttcaagccataaaaagatgaaaaaagtattagcaaatgctctttattgtattcacctataaaataacctttcttcttatgaaaacggagtcaaatt<br>ccttacagagctcctgtctctaaaggttgtgagcattaatgagatgatacatgtaaaagcttctataagagcaaatgttaacaggattggactaggtagt<br>agtaacataacaggtacagtgggtcctccatatccataggttctgcatttttggattcagccaacggtggattgacaatattatggaaaaaaacaccaat<br>aaaacagaataatacaacaataaaaaataaatagaaaataatatagtgtaacagctatttacatagtgtttacattgtattgggtattag<font color="green"><u>AAGAAATCGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AGAAAAAAAAAA</font><font color="green"><u>AAGAAATCGA</u></font>gagatgatttaaaatatatgcgaagatgtgcatagattatctgcaaatacgacagcattttatatcagggacttgcgc<br>atctgtggattttcatattccaggggagtgttagaaccaatccccagaagatactgaggtgctatgtagggatgtaatgaaacgtgagagatactgaggt<br>gctatgtagggatgtaatgaaacgtgagagatactgaggtgctatgtagggatgtaatgaaacgtgagagatactgaggtcctactgtagggatgtaatg<br>aaacgtgagagatgctataattttcttgtaaaaggaggcactcacttcattaggagagaacttttaatttttccggtaggattttgtgagaaatttgcct<br>cgtgttacttca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	61	558	236	NA	intron:ERC1:NM:178040:13/19
0	chr14	71886197	71886513	1000825	0	-	Yb8AC870; RIP_Alu_chr14_070_02	TAAATCCAGGGAAGAAACGATG	GTCTTTGTGTAGGGACTTTCAGG	SINE	Alu	Yb8	ttcatatttctatcctggctaatactaagcaaaatgttctctacataatagatataaaataattatttgcttaattaacttttccactaataaatccagg<br>gaagaaacgatgtcaacaaacacagaatatctaccttataactacaaaagctttaaggtttttgttttgtttttttgagacagggtcttgctttgtcacc<br>caggctggagtgcagtggtgtgatcatggcccattgcaccctcaacttcccaagctcaagcaatcctcccacctcagccttccaagtagctgggactaca<br>ggtgcatgccaccatgtccagctaatttttttttaagagatggggtctcactatgttgcccaggttagttttgaactctttgcctca<font color="green"><u>AGAGATCCTCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAGATCCTCCTT</u></font>gagcctttcaaattacaggattacaggtgtgggccatcacccctggcccaaaagctttcatttcaggcca<br>gaacagccctgaaagtccctacacaaagacagatatttatcaaatgttacctagtcaatttctcaaaacatttacttttcagttgactggaaaaaaacac<br>tggtcggtagcagacaagggtcagttactgaattaagctatagacttaaaaaaaaaaaaaaccctgaaagaaaacaaagtccgttagctctacagcaacc<br>attcactatttaacctactgaacgctcatccagagtgccaatcagaccgttttaattaaggaaactattacaggcagaactcaaggctagtcatgtgctg<br>agacagcaacggttcag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	740	410	NA	intergenic
0	chr16	52004407	52004737	1000826	0	-	Yb8JW813; RIP_Alu_chr16_050_01	AGAGATTTCCAGTCTAGGCTTCG	GATGGTAAACAGCGTCTTTAAGC	SINE	Alu	Yb8	cttctctcctctccttcacctctgcaatcccatgtgtctttaaagtgagagtcattggccattctttggttactccctaaaataatatcaaaatacaccc<br>gctctcatcaaaatccaatgagacggcatatgcagcatttgcttaatgcacattaaatgctcgataagttcaatttccttttattccctctaacgggaag<br>agagtgtctccctctatttctttccttatcggcctggtcagtgggcagccgactttcaaaatctgtttatttgcttagtaaaagtttgaggtaagcaagg<br>tttgcctgagctattgcatttccctgaaagtctattgagtgtagagatttccagtctaggcttcggatgcagagaggcttgggtttaaaagc<font color="green"><u>CAGCTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAATT</font><font color="green"><u>CAGCTCAG</u></font>tcaggagctgcagaagcttaaagacgctgtttaccatcctttgtgaaacgggaatgatgat<br>gatgacccatcactcactggagggaatgaatgcaaagtgcctagcacatgtatgcatccaatacatgccacttcccttcccctattaaatatatatttat<br>tcctttgacttacccctgtgcttttcagcatgtccatttcccatggccttggctactgtgggggaagagggcactcacagggtgttttgccttccatcaa<br>aaccaacctcccctgctctctttttctaagtatcctgccttctcttctacttgggatgagttaatcagatgaactaaacagagtcagggcgcgctagcca<br>acaaggttccagaaggtggttaatgtgaaca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	435	98	NA	intergenic
0	chr20	58926729	58927036	1000827	0	+	Yb8NBC444; RIP_Alu_chr20_058_01	GGTGATGCTGTCATTTGGTG	GGACTTACTCCTGCCAGTCCT	SINE	Alu	Yb8	agggctcaggtacttctccttgggttaaaccgagcttttttcaaaatgttgcttaaggaccatgggcgtaagcattgcctgggtttctttttgagccttc<br>agatgcctgagccgtctccagacctgctgagatgaaacaccagggctcgggcccgggacccaggcatgcttaactccaggaggagtttcttatgcactct<br>gaagttgaggcccatggaatgggcagtagtgtgataataagccctgtaagtgattattaaacctccgcagtcctgggctcaactttgatcacctgtatgg<br>tgatgctgtcatttggtgattagggagtatgaaggtcaagttggaacttcagcagtttcaaagaaactcaagttgaagagggatgat<font color="green"><u>AAGAATGTGTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAGGAAGCGGAGCTTGCAGTGAGCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAATGTGTTTG</u></font>ttcctctgttcatgatcttagataggactggcaggagtaagtcccttcccttgcattggacatctgtgcttgcctggca<br>cctgtacctgggaaatggaatgtgtgttttccttttatggaaccacgcttctcctgtttttggtccagggggtttgagagaggctgactccatccctatc<br>cataagggaacctccctggacctggcctagacagccagtttttcctgtttctttgactatagtaatttgttcagggatgggcatgactcatcaagcaaag<br>aagacttgagacttgtgcttaggggactccttttttgggaaagagctctctctgccggaacaacaagctgatcagaggtgagcctggtgctgctagtggc<br>caccagaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	467	146	NA	intergenic
0	chr1	58343224	58343535	1000828	0	-	pAlu1-57700822;Yb8NBC461; RIP_Alu_chr1_058_02	CCAAAGTCATTCTTCATTCTGC	GACACCCGAAAAGACTAAAGACA	SINE	Alu	Yb8	aaatttgtttccacgttacttgcaatgttgacaaaaggcaaacaatcaaaatttccaaaaataagaaaaagattttactgaagttcttcacacttaaata<br>atgcagtcattaaataaaacatatttctaaagaatttttcatgttgttattgacatatggacataaagataggcttcagagctttatatacaacaggatt<br>ccaattttgttccaaacatatgtttaggtgtgtaattatagacacccgaaaagactaaagacagtgcgttaagatattaagagtgaacctctctacatag<br>caggataataagggtttttatttttctctttatattttgttcttctaaatctgatacagtgatgagtatgtgtaacttttgtaattat<font color="green"><u>AAAAAATAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGACTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAATAAATC</u></font>aattaggatttttaaaagatgaagcagaatgaagaatgactttggactaggactgactcaggatggagagaattat<br>cccaagtgcttcaggtgggaacagccaaagggtgtgtgtgggaatgtcctagaattgtgtcatatccagagagggagctgcagggtggggaacagagtgt<br>atcataatggtcaagacttacgcaaactcagggcgcccacaacaatttccttagctgggacagagggtacaaatcttaactttagttggctttcaaaact<br>aggcaactgaactgattaaaaaattcaaaactggggcagtgggttcaagtcctggctcttctaataaccagctctgtggctttgggcatgtgtcttaacc<br>actctgaacctc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	529	205	NA	intergenic
0	chr1	98605298	98605299	1000829	0	-	Yb8NBC596; RIP_Alu_chr1_098_01	TCCAGGGCCAAGTAGTGAAT	CTGCCCCAAATGCTTACACT	SINE	Alu	Yb8	cctaagaagacctcttatctagagattttatcagcataaataaactaaatcttcacacctgtaatgcagctattattcaaattctcatatggatgtccca<br>aagagtaaaaaagatagcaatattttcatgggaaagtgactattctgtcaggacccactcaaccaaatagaataggtcttataacctccttctacttctt<br>ttggttttgcacaataataaataaatgcccagtgtgtgctcaatatttaacttatgaattaaaaagtactgagatttacttctttggcatttaagttatt<br>tttatatccagggccaagtagtgaatacacaatagataagtaggtaccaaatagataattttttagactaccacagctaaggcc<font color="green"><u>AAAGAAATATTTTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATATTTTTGA</u></font>ataaatgaacatgcttctaaagttaatcttcctatcctaactcctgtgtaatgagtatct<br>tagctccagagaatgattctgatagtggcagtgtaagcatttggggcaggttagtaagactcttggtggttgctatttccactttaataaaggatgatgt<br>ttgaatgtaaaacttagtatcaattttggcaccaaagtaccactaaaaaagttgcacccaccattttccaaccctttcagtattgcccatctatgactaa<br>acattgacaaaagagttgaaactagcatataggacaaatcttacccagttttgcccccatctcctacctgctaactgctctcaacctaccaagaatgaga<br>cttctttatcctaaatgaatcaac	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	543	203	NA	intergenic
0	chr1	233865156	233865470	1000830	0	+	pAlu1-230192979;Yb8NBC605; RIP_Alu_chr1_230_02	GCCTCTAGGTGGAGCCCTTT	GCCCCATTTATGGCTGTTTA	SINE	Alu	Yb8	aggcaagtcaaacagttgtcaaaatccaaaaagcagcttataaccttaaaacatttagcaaacccggcacctgacctgcataatttagccaatctattta<br>tattttgacaacatctgcttttagccagtaatctttaatactgtttttatttctcaaagattaaagtcacatgaactgaaaggtaccacagctttttatc<br>ttccctttaaaaaatatttgatctaagcgcttatcttcctttaggtcaattagaggtctttttatagtcatcacacacaacacatatatagctacagaga<br>caggcagaagaaaacccagtcaccataagatctttcatttgccaatctcctaattggattattggcctctaggtggagcccttt<font color="green"><u>AAGAAACAGGGCTGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACAGGGCTGGC</u></font>tgggcgcggtggctcacgcttgtaatcccagcactttgggagcactttgggaggcaggtagatcaggag<br>atcgagatcatcctggctaacacagtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcgtggtggtgggcgccttatgtagtcccagct<br>actcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgtagtgagccgagatcgcgccactgtactccagcttgggcgacagagcga<br>gactccgtctcaaaaaaaaaaaaaataagaaacagggctaggaaaacatgcagcttctaaggcctaataaacagccataaatggggcaaaaaacagattt<br>tgagaggtatctatc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	723	392	NA	intergenic
0	chr8	5748188	5748505	1000831	0	+	Yb8NBC636; RIP_Alu_chr8_005_01	CCTCTGGCAAGCTGCTTAAT	TCACAGCTAGAGGAGACATGAAA	SINE	Alu	Yb8	acaaaaaatattgttattttttaacatctaattttattaaatatctactttgtgttaggttctggtaaatataatagaaatgaatttctactgtttatgt<br>gttttaaagaaaataaatacattttcttctcatgtatgggctgcttttgattcaagtaagaggaaaatcagtgaggatttcttaaaagccatagatattt<br>taaagttatatatttttctttccacaacttgtatctctctctttaatgggagagaaattacagtgtgttttagtggtttaaggcatatctcaaaagctag<br>acacacctgggaaaaaaaaattttgccaaccattattattggtgacctctggcaagctgcttaataaaatcctcaatttctctctctat<font color="green"><u>AAAAATGGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGAGA</u></font>taataatccttatctgatggagttttaattatcatggaatgatttcaaatctctgtgtgtttactgtactt<br>agcagactacttatttctgttttcatgtctcctctagctgtgactttttttttcaccatggaagcaaaaatgctcattctgcttttggttttgttttgtt<br>ttactttactttttttttttttttttttataaacaacagcatttttctaggcacattttccttaattttcaaataaatgacaaccagtcattaaaataac<br>ttcaatcttcttattaaactgaaaaacagatttaatcttgttatagaatactttcaaatataactcatcatcatcttcatcaccatcctcatccttttaa<br>tgtataatgagttactat	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	169	NA	intergenic
0	chr1	188994965	188995283	1000832	0	-	Yb8AC998;pAlu1-185461323; RIP_Alu_chr1_185_01	GCAAGTGTCACTTTCTTTGAGC	CAACCTGCTATAATCCTGAATAG	SINE	Alu	Yb8	agtattaatgtaatctcttatatatgtatttaaatctcttttattcttggaaatcatcatggttattttggtttattaaatgaatgacatgttaaaaaac<br>aagccttcatctctctaaaaatgtcatattaatgtactcacataaagaaataatggaatgattaaaaattgacaatttttcttaatgtatttgtatatta<br>taaaactggtagtctgtgcacctgccaccagtaatctgcaattatccattgcctgaaagtctgcaatatgctttataagccaaaaagtaaagctgttttc<br>aaaagagaacacaaaatagaatgcaagttgtcactttctttgagcagccatctgtcttagaactacttttctgcaactgaatat<font color="green"><u>AAAAGAAATAGAATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAATAGAATTG</u></font>agacaaattgtctattcaggattatagcaggttgttatgattttaaataatgagatagatgtata<br>aaagtattaactccaactatcatatagaagattgcttaaataatatacatttaaagttattagtaacactttataaaatctttcagtttgatcacagttt<br>tagagtatagatacactcttacgattagcatgttatctttgcaaattatctgcatatttgtaaaaagccaaatattcaactgcatgaggattggcattgc<br>aatataaggattgaaagttagatgcgtggtcagaagaatgtcattttcaaataaattgaattgtttgtgtaaggggggcaacaaaggcgaatgagtaagt<br>ggcatttggtttaaattta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	447	112	NA	intergenic
0	chr1	85748635	85748950	1000833	0	-	pAlu1-85036899;Yb8AC1025; RIP_Alu_chr1_085_01	GGATCCTAAGCTGGAGCAGA	GGATTCCAGTTCAGCCTTGA	SINE	Alu	Yb8	cccccactgcagccagtgtcatgatagcagccactccagaagggccacccacgccatcaccaagattgcaacactgaactccagcctgggcaacagagca<br>agaccctgtctcaaaaaaaaaaagttattttctggaattatgcttgccatcgaaccccacctggagtttgcaaatatcatcttcctctttctgagacttg<br>cattagttaacattgccagtcttcagctactctcattgttgcacagtgcccttcatggatcctaagctggagcagatacatcatttgtgaggctcaggat<br>ataatgattcagagaatgctcaagcatcctagcttctctgaatcattatgtcctgaagcacttagctcagtctacagctagtaatt<font color="green"><u>AAGAACACTGGCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACTGGCCT</u></font>tattatcaaggctgaactggaatcccggttctgctacttggtgggagaatgaccttgagcaaatcatgtt<br>tctaagcctcggatttctcatctctaaagtgaggataataaagcctacctgtaaggactgttataggcattaaattcccaccacagatgtaaagtgcttg<br>gctcagagtgaatgtgaaataaactgctagtgattatttcttcccagggagttgtaagactgggagatctagcccctcctccaatatccccctgctggca<br>tataggtatgcaacctccaaacattcaggactcatagcaggtgcctgcctgcactcttcaaaccagtcctctagggggaagacaaagggaatgatccctt<br>atctctggttccctca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	169	NA	intergenic
0	chr1	28621453	28621901	1000834	0	+	Yb8AC1026; RIP_Alu_chr1_028_01	TTGTCATTGTGGAGTGTTTGC	TGCCATTTATATGTCATCATTTCTC	SINE	Alu	Yb8	tacacatcgggtgtggtggtttacatctgcaatcccaactactcaggaagctgaggtgggaaaactgaagctgaccccaggagttccagaaaagcctggg<br>caatgttgcaggattccatttcaaaaaaattataccgcactttgggaggccgaggcaggtggatcacagtcggaatttgagactagcctgaccaacatgg<br>agaaaccctgtctctactaaaaatataaaattagccgggtgtggtggcacatgcctgtaatcccagctacttgggaggctgagccaggagaaatcgcttg<br>aacccaggaggcggaagttgtggtgagccaagatcgtgtcattgcactccagcctgggcaacaacagcgaaactccatctc<font color="green"><u>AAAAAAAAAAAAAAAATTA<br></u></font><font color="red">TACCACACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACA<br>AAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGA<br>GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT<br>TAGCCGGGCGTGGTGGCACATGCCTGTAATCCCAGCCACTCAGGAGGCTGAGGCAGGAGAATAACTTAAACCCAGAAGGCGGAAGTTGCGGTGAGCTGAG<br>ATTGTGCCATTGCCCTCCAGCCTGGGCAATAAGAGCAAAACTCTGTCTC</font><font color="green"><u>AAAAAAAAAAAAAAAATTA</u></font>tacctaaaaaacttacaataagtacatagata<br>acgtgatcacttcttgagaaatgatgacatataaatggcaatattttctattaacaaatatttgttattattcttattttttgagacagggtctcactcc<br>accgcccaagctggagtgcagtggcacgatcatggctcactgcagcctcaacctccctagctcaagtgatccgcccaccttggcctcccaaagtgctggg<br>attacaggcctgagccaccacacctggcctcattgtgtaatcttttgtgtttgtcttcttcgttaccataaagcttttgaagctaattcatgttgtcgtg<br>tgtatccatagttcattcctttttgttgctgagcacaatactattgtat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1077	775	NA	intergenic
0	chr2	169886237	169886548	1000835	0	-	Yb8NBC420; RIP_Alu_chr2_169_02	AAATGCCCAAGTTTCATTGC	AACTGCCACAGCGATTCTTT	SINE	Alu	Yb8	tgataacttatttatgagctgttgtttaatagaagttcttttctgtgggcaacctcgtcccctcactgctcacccccctcaccttggttccccctgctgt<br>gctctgtaacactgtgattgtctctggttgaagcctccatttccctgtctaggagcttctgtttacactccaccccactctagattgcaagccccttgaa<br>taatttttgtttcctagtaccaagaataatggtgacaaatattaggggatgactcctaaaaatggattaagaagctatttagggggaaaatgcccatttt<br>gtggttttaaaagatgctacaattgccataaaatgcccaagtttcattgcagaaatcaaatactggagttgtgttttgcttggtc<font color="green"><u>AAGAGGAAAGAACTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGGAAAGAACTG</u></font>tacatttagagacaaagaatcgctgtggcagttaactttggtgttacattctgttttcttcctaagcaattct<br>ttagtcctctacctcaacggtgcctctgaagaaaggacttacgtggccaatgggatcaccgtgtatttatttcccttccctatcagccatagccctcagg<br>gctggaagggcctcattttagtctattcccagactgggtcacccacagtgttgacacacagcatcaaccgacagtgagcttatctggaaaataatgcctt<br>tctattttctttgtttcttagcatatattaaatgtttctttccttctctaataatcttttagataaagaaatcatttgctgagctgataataacaaaagt<br>atcctacctaca	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	430	103	NA	intron:ABCB11:NM:003742:1/28
0	chr2	224473115	224473334	1000836	0	+	Yb8AC726; RIP_Alu_chr2_224_01	TTGACACTGAAGAAAGGACACAG	CTGTCGGAAAAGGTCAAGTGTAT	SINE	Alu	Yb8	gggctcccacggattcaccagatgacttttcacagttcacttagcctttgtaggaattttggagtgctttctatatcggcaaaatgaatatatcacttct<br>ggaggtagggcacttgcatatataatatgatgaggggagctgagaaaagcctccttaacccagaactttctcccccaaatccagccagcctgtctgtatt<br>ctacatcataggtggtttggggttttttagaatttttggtacagggtccttaggagctccattgtaagggataattcattaatcagttattacctcctta<br>gcaggaattagcgcacaaatcaaatcatctcactactttgacactgaagaaaggacacaggccctgtatactacaggggcatgatt<font color="green"><u>AAAAGCATGTATTG<br></u></font><font color="red">TCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG<br>GCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGT<br>CTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCATGTATTG</u></font>gagtcgtgattctcaaagggtggtcccaggttagcaatatcatcaccactcagcaatctgttagca<br>acacacattttcagaccccacccagaagggttcatttagcataaaaccaaatataaatgtaaatacacttgaccttttccgacagccttcctagagactg<br>gctcaccagcccattatttgctcccgatatggaaacgctactgatgtttgcaaagaacatctcttcctggctttatagaggtttcaaattgattcttgca<br>taaatacagatgggtttatctgagtacaaattagctcatagattgctatgattggaaagatatataaaatgtcatccactctaacctggctcattgcttg<br>catctgctctgtcaaattcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	448	214	NA	intergenic
0	chr2	85335371	85335675	1000837	0	+	Yb8JW658; RIP_Alu_chr2_085_01	ATAGGTACACGGTTGCAGTTGTC	AATGAAAGGATGCATCTCGAAG	SINE	Alu	Yb8	aaaaatcatgaactctttgtatgttaggagtattagtgtgttatgacttgtcaataccttttgacagtttgttaatttcttttaaatattttaggtcttc<br>ctctctctctctcccttcttctctcatgtttgcaaataatatttacatttatatagtaacagttatcagtcttttctctatagcttctgcttttaaagtt<br>ataaatgttttcccactcccagtttaaaaagacacattcagtttttcttctagtatttgtgttttcatttttcatatttagatctcttacccatttgcca<br>tttattctggtatatgagaagaatgaagctgatgttatatttttccatataggtacacggttgcagttgtctcaataccgtttattt<font color="green"><u>AAAAGTTTGGCTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATTATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTTTGGCTC</u></font>ttccccactgcttcgagatgcatcctttcattgatctgtctattcatatatcaacactatactcttttaattacagaaactt<br>tataacattttaacgtcgtggagggctagcctccctatgtatctctttcttaaagaattattacttgtttattcttttttttttttttttttttttttgg<br>acacagggtcttgctttgtcacccaggctggagtacagcggcatgatcttgactcaccgcaaccactgcctcccaggttcaaacggtcctcccacttcag<br>cctcccaaggagctgggactacaggcatgtgccatcctgcccagctaatttttgtatttttgtagagatggggtctcactgtgttgctcaggctagtgtt<br>tattc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	402	84	NA	intergenic
0	chr2	122056849	122058069	1000838	0	-	Yb8AC914a; RIP_Alu_chr2_121_01	GATAAATTCCTCTCTGCCCCTAC	CGGGTTTTCTGTAAGACAGACATT	SINE	Alu	Yb8	tgggaacaatcctacccagatttcaccactaggttcaacagaatgtaatgagccagtgctgtatccagtgttaaacaggcatggcatgttgcaacaaatg<br>ctacacaggaccacctaatctgcaaaaaaacttataaccatattttaaagcttcaggaggcaaaactattccaattcaaaacactaagaaacagtcccat<br>catgaaaaccaaaatcaacttctgagggtaccaaaaggggtacaggacaaatgtgaggaaaatcagcatttgtggagttacaaatacgggttttctgtaa<br>gacagacattaaagaattcagtgacaaagcttgaaaatacaaaataaaacaaaagtcagtggtcatataattcaaaatttacttcagaaaaggcaa<font color="green"><u>GGCA<br></u></font><font color="red">GGCCAGGCGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAGAAAAAAAAAAAGATTTTAAGTG</font><font color="green"><u>GGCA</u></font>actctaactagtaggggcagagaggaatttatccccaccagaattgctagaagggctaaaaaag<br>caggtccaggcaaagcttccagaaacaacgcactgcttaattgctgtgatgaaccccagaaacactgtctctgctgcctcctataccagcaacagaccac<br>ctccacccatcctgcttcctcatgttgcttccaaatcaaaacctcctatgggtgcatcttattgacggaagttgggtcactgcctgcaagggaggctggg<br>aaatgtagcttaccaaattttgaccttaagaaaaagacaggattcacagttttggggagccagcgtatttcactgattctaaaacacacattttccccac<br>attttcatgtctctgaaatcaggatgcttctg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	483	336	NA	intergenic
0	chr2	33781301	33781613	1000839	0	-	Yb8AC1089; RIP_Alu_chr2_033_01	CCTGGGGAACAACATTCATC	TTGCTGGACACTTTATGTGGA	SINE	Alu	Yb8	tcatctttataaaattgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttagggtatgaggatagaaaccagaataaaactaatgactc<br>actgctgggcaataagatcttgcagtatctttgctgcttgaaagtaaaaatctaagttagaccaaggcaagtgatagagaagcactaatgggaaggtccc<br>tctgagcactaaacagtggcttccattgagatttgggaagctttttgttcatgcaaaatgaggacgaaatactggaaaacgactggagaaaaaaggcatc<br>cctggggaacaacattcatctgaaggtattctgtgattaagatgtttctttttgtagttttattatattttttcaaaagctttat<font color="green"><u>AAGATTATTAGAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGATTATTAGAAGA</u></font>accatataaactgtccacataaagtgtccagcaacttcttaaacaacagtaatgtatacttgatcatatatg<br>tacaagtagcaacacattcctaaatgcttagtatacatgcatattgcatttgtcaaatatatttgattcaattgtttataaacttaattaaatgggaaag<br>atagaggaaagcattcattgaaaaggacaaaattacgttttaagttttctcctcgttttttgtcaccatctatgtgatttagtagagaaaggaatagcta<br>agtgtgagtgggaagaagtgcctgtgcattagagaaatagtgtgtaggtgtttttctttgaaggaagaagttcttatattcagtattttagctaggcttg<br>tcccactcagaat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	462	134	NA	intron:RASGRP3:NM:170672:16/19
0	chr2	233668387	233668676	1000840	0	-	Yb8AC1094; RIP_Alu_chr2_233_01	CTGGTGAAGGAAGAGACAGTGA	TCAATGAGTGTCCGTTTGCT	SINE	Alu	Yb8	gtaaatctacatgtacagaatgcatgctgaaaactacgcaacactgatgaaagaaatcaaagatctaacaacacagatagacataccaagttcatgaact<br>aaaagactaacatggtaaagacatcaagtcttctcaaactgatagagaggtttaacataattcctatcagaatctcagcaagatttttagtaaatacgga<br>caaaattatcctaaaaatttttatggaaaggcgaaggaaatacaaagctaaaaaaaaatttttttaaaagaagattaaactgggaagaatcagtctaccc<br>aatttcaagacttattatacagctacagtaatcaagattgtacagtactggtgaaggaagagacagtgatctatgggacaaaatt<font color="green"><u>AAGAAGCAGAAATAG<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTT<br>GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCAGA<br>AATAG</u></font>aaacagacccacaaagaaatagacccacacaaatatgcttaactaaattttgacaaaggtgaaagaaaacaatttaagagagaaaagacattctt<br>ggtcccgaagcaaacggacactcattgagaaaacaacaacaaaaaacaactagcttatatgaaaattaatttaaaatggaccatgaacttaaatgtaaat<br>tataaaaactataaaatttttccacacacacacaaaaaaaaccattggcatctaaagctaggcaaagtgttcttgttaaacttaatacaaaaaagaacaa<br>cctataaaagaaaaacatttatctattggattaatcaaaatttacacctttttgctctgtgaaagactctattaagagaatgaaatgaaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	481	176	NA	intron:GIGYF2:NM:015575:16/31
0	chr3	2311631	2311932	1000841	0	-	Yb8NBC405; RIP_Alu_chr3_002_02	GCCCATCCCCTATTATAGCC	ACCAAACCCCCATGACACTA	SINE	Alu	Yb8	cccccctccttgtcatcatgtctgtaagcatgtagccacagagcatattaacagatattttaggcaatttgcaaaatctctctgagaatgaaggaaagta<br>gggccccacaggtcataacaagtactcctgtccattcccacacttaaagccaagtgatgtattaacataaggcaatcccatatatatatataccctctgt<br>gcctctaactgtctaagaacaacctcattcccccccttccccaatgtacacactttaaactggctatcaggtactaggcttagtacctgggtgacaaaat<br>aatctgtacaccaaacccccatgacactaatttacctatataacaaacctgtatatatgtcgttgaacctaaaataaaagttaaag<font color="green"><u>TAAATAAATAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAATA<br>AA</font><font color="green"><u>TAAATAAATAAATA</u></font>aataaataaataaataaacaaacaaacaaacaaactggctataataggggatgggcggggggtggtggcaactactagtcctga<br>atgcaaagctctactacaaactatctttccatctacaaaagtcaatgaactactgagtttcatttcatcgttttttataaataagggtagagactctgta<br>atccatcaggtctcttttctccaaaatgatagttttaatgtaatcgattacatcacggacatagttatacttaatcaatttcagaaccctgacaaagaaa<br>ggtgtaattctttgcgggacctcattgtatcatggtctcccaaaccattcctaagtgatttcttaaagcaacttgaaaaggtgacatcaaaatcctgaag<br>ta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	463	155	NA	intron:CNTN4:NM:175607:1/24
0	chr3	5275622	5275927	1000842	0	+	Yb8GK644; RIP_Alu_chr3_005_01	GCCTAGCATGAGCTTCCTTT	GCAAGCTTGTCAGAGAATCG	SINE	Alu	Yb8	cagcctagttgattcttaagatgattgcaagcttgtcagagaatcgcagccaggggatccaaacaagttgctcctgagttcctaacacacggcaactgtg<br>acataatcagtggtgctgttctaagctgcgaagttcgtgggtaatttgctgccctgcagtggataactagcacgaagagttctgggaggtggaaacagac<br>aaagcctgtattgtgcttctataaaacttactattataaggaaatcattttcccaggccattaaaaactagtcataaatatgatttttcatgaatgaatc<br>ataatttatttagctattctcctatgattggctatcctgattgccgtctttattttctgtgatgaataatgctaccaagatttgtatataaactgat<font color="green"><u>CCA<br></u></font><font color="red">GGCCGGGTACGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AATTAG</font><font color="green"><u>CCA</u></font>ggtgttgtggtgagcacctatagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggaggctgcagtgagca<br>gtgatcatgccactgcactccagcctgggtgacagagggagactccgtctcaaaaaaaaaaaaaaaaattaattaataaaggaagctcatgctaggccag<br>gcatggtggctcatgcctgtgattccagcactttgggtggctgaggcaggtggatggcttgaggtcaggcatttgagatcagcctggctaatatggtgaa<br>actgtgtctctactaaaaatataaaaattagccgggcatggtggcacatgcctgtaatcccagctactcaagaggctgaggcaggagactcacttgagcc<br>taggag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	870	561	NA	intergenic
0	chr3	147628648	147628946	1000843	0	-	Yb8AC1133; RIP_Alu_chr3_149_02	GGAATGTGGTATGTGATGAAGGT	ATATCCCAGCACACAGTTGAAGT	SINE	Alu	Yb8	gctattctgggtcttttgcagctccatgtaaactttaggattttaaaaaatttcgaacagaggtatttattaggttggttcaaaagtaattgtggttttt<br>gccattgaaagttatggtaaaacccacaattgcttttgcatcaacataataacatgatcaaagaggtcaaaaatggtttcccccaagaaaacacctataa<br>gctgaaagctgaatgatggacaggtgctaactagaagaccagaaaaagcaagtttcaaacagagaagtggcatgtgcaaaggtcctgaggtgggaagaaa<br>catgctggatacaagacttgatgggaaaccattgtgactgccatggcaagaaaagggggaatgtggtatgtgatgaaggtggcat<font color="green"><u>AAGAAAGCACCAGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAAGCACCAGAG</u></font>ctctctcttttttttggtgagagttttgtttttttctcaaataactaacattttctttaaaacttttaaggaattttaatatggac<br>agagtacttcaactgtgtgctgggatataaattgtagaatatttgttaaatgaatgagattaattataattttgtttttcaaagtaactttaatagtaat<br>aaaaaataaaaaatatcctaaaggtacaatactggtttgtttaaattgattttagtacattcatacagtacaatgttttgaagttgttaataatgataat<br>tctgcagaagaatattcattggcgtgaagaattgtcctcaatacagtaaatgaaggcagcctttgacaataaaacctcagactggcatggaatccgtga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	157	NA	intergenic
0	chr3	95116209	95116522	1000844	0	-	Yb8AC1141;pAlu3-96397335; RIP_Alu_chr3_096_01	CTCTGAACAAGTAAGTCAGGTTG	AGAACCTCAAGAACCCCACC	SINE	Alu	Yb8	caaaatggaaaaggccctttctcttattttagcttcttgcttttactatcaaggtaagtgatcaaagtcttaatagttaaccatcattttggcttgttgt<br>tgctataagtgactactctgacacctggcagctcagctctctctccagctgagctgagttcccaacaggtaggtacatacataaggaactaaacaataat<br>ttagggattaaactacaatatcttgagcaatggcctacagaaatgaatttataaagaaaacagagtaaagttacataatatattaaagaaaaaatatata<br>aattatcaaactaaatcatttatgatgaaaaattaatatttatacaaatactacagacaaaagctactgacaaatactctgaac<font color="green"><u>AAGTAAGTCAGGTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGTAAGTCAGGTTGG</u></font>tggggttcttgaggttcttatctgaacaagaataggaaaaggctgtgaactgttgattttcatcgttcac<br>cacggtttgaaccaaacaggtattattttatgtggaaaggatgaaaaagttcaggtttagctcagagaggtctatagctttgatcagattcaaaaagagg<br>attcaaaatataatttttaagaactaatgatagatattaataaaatacttttcaaaaattaaaccttcagttatatgtaggtattcatttgctttgtaaa<br>caaaactttttttccgttttatgcaggtgttttcgcatcttgaaaacatgtttatgtttagtatgcccatctgcctgtccttccgtgatatttttttctg<br>gatacaaagatcta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	372	44	NA	intergenic
0	chr3	97435129	97435437	1000845	0	+	Yb8AC1181; RIP_Alu_chr3_098_01	TGATTCAAGATCATGGGCAA	AGGCACTGCATAGTCTCCGT	SINE	Alu	Yb8	taataaacattttagtacccctccagtttacttatttcctgtttttcttttgttccctaagttattaagtttgctctgtaagagaagtattagtaaatga<br>gaagccatttgagttacattcagtcactttgattagcatctttggtaatttttttctctctcataaacatatggtaaagcaacatgtaatgttccaataa<br>ttgtgatttcaaatctaaagtactatttgttcattcccgaaacctgaagcaaacatctggtggttaatgctttaagaaaaaaagtaccttagtgcattac<br>ctctgtatatgattcaagatcatgggcaaaaatatgtagatgagatcaagccacaaaagtttaagttgatccattcaattaaaaaagg<font color="green"><u>AAAAAGAAAAGA<br></u></font><font color="red">TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAGAAAAGA</u></font>cccaggtgcttctgtgtttcctctaatgtaaggaacggagactatgcagtgcctgaaggacttcttcctttctgcctca<br>tcttgcaattagatataaactgtatcccgtatatatcctcccattggaacaaaagatgtgactgcttccctatccctattccatgtatgctcagaattat<br>tccagtttgtgcataccatcaggttcatattatcatgcattttgttaattcaaattctatttcctacattaaacttatgtcccattttttcttgttttat<br>tttaagatttattccagttcatactttccatttaaagacagcagttgttggccaggtgtggtgggcctgtaatcccagcactttgggaggccaaggtggg<br>tggatcact	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	61	466	145	NA	intron:EPHA6:NM:001080448:14/18
0	chr3	122138452	122138768	1000846	0	+	Yb8AC1197; RIP_Alu_chr3_123_01	GCTTTGGAAGTTTCCTCCCT	ATACTGAGGGGCAAGGGAAA	SINE	Alu	Yb8	ctggccaacatggtgaagccccttctcaactaaaaatacaaaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcagggggctgaggca<br>ggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccatcacactctagcctgagggacaagagcgagacttcatctcaaaaaa<br>aaaaaaaacaacaacaaccctttgtagagacagagtttcactacattgcccgggttgaccaagcaaaatttcttacatggtctcattaacagtttctatt<br>tctgctgcccttaatctttaccatctaagtgctttggaagtttcctccctacagaaatcaactagatttctttaaatttcccagacatctt<font color="green"><u>AGAAATGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGAA</u></font>agtctcttatcttaatatagtttaaaggtgtgtttcccttgcccctcagtattgtaaatatctaaacagatgtg<br>ttgccacaaatggggcaatttttaaatttaaaaacaattttttttttgtatgtgtgctggaccaaaccgtggcatgggagtgattcccacattaaggaat<br>gtctcaacatccttcatagcaattcttgactaccaaatccagtctcaatatcaagcattaatagaactatgtatacctagttgcttaagaccattagcca<br>atgtatgaaaatctagttgggctttataaatatggagtggccacgtaacattatctaaactgggacatttttaaaagtgaaagggggcagtaaaataatt<br>cacaggtgttagctgat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	447	122	NA	intergenic
0	chr3	129184487	129184780	1000847	0	-	Yb8AC1202; RIP_Alu_chr3_130_01	AGTCCTCTGCAGCCACAAAT	GAGCTCTTTGCTGTGGCTTT	SINE	Alu	Yb8	gctaatggcctttgacagcattagacatgcatggtacagcatgggccaaaaaaaattattcaggaagaagcataataaccttccaaacaaccttctaaat<br>caagtaggcaaccatctgtaaaatgacattgagctggtaaacaagtaggacctttcgtttaccctcagaggactctgtaaaggatactgatggtttaata<br>atattataggatatataaagagcatatagggtcaggcacagtggctcacacctgtaatctcagcactttgggaggctgaggtgggtggataacctgaggt<br>cagaagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccaggtgtggtggcaac<font color="green"><u>AAAAAATTAGCCAGGC<br></u></font><font color="red">GTGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAA<br>ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAAA<br>TTAGCCAGGC</u></font>gtggtggcaggcacctgtaatcccagctactcaggaggctgagacaggagaactgcgtgaacccgagaggtggaggttgcagtgagccga<br>gattgtgccactgcactccaggctgggcaaccgagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaagagcatataattagtttactctcaaagt<br>cacatggacatagaaagcaaagtgtgtataaaatttaagaaggtaggtgccaattgtttgtgtatctctaggctttagggacgtctgtagacttaatttt<br>gactttctgacaagggcaaaaaaaggctcatgaaaaagctatttattaacaggtgggcacatattctgcccaaacttggagggaagaactaaaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1175	864	NA	intron:IFT122:NM:052990:5/27
0	chr3	133490301	133490609	1000848	0	+	Yb8AC1204; RIP_Alu_chr3_134_01	CAAGCAAGAATCAATGGGTG	AATTCCAGTGGGCTCTGCTA	SINE	Alu	Yb8	aagcaccaagatattggcttgtaagtactcttctttactaaaaggaaccagaactccttggaaaaatagctgacttcagggctggggcaggaaaaataga<br>tgctgagcctagaacaacacactgaagtgctcaaacagtgatgggacactcaaagcatacaagaaccaatttgaaggatctcctgttgccaagtctggga<br>attttgagcattaaaataaataatgatagcagtaagggataatagcccattgaaagaaataagaatgcatgaggcaatactgattaaacaaatgaagaag<br>ggaaaactaatcaatgtggaaggaatgatagagttagaaaactatcacttggcaaccaatatattgataactgattcaagc<font color="green"><u>AAGAATCAATGGGTGTTAA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATCAATGGGTGTTAA</u></font>cttgtgggtgaacgttggacagccataatattaataaaaacaaacaaaacaaagcaaaacaaacattggcca<br>gactgagcactccacacctgacccctcagtatcactaagtgctagcagagcccactggaattcaagctgtgaatacttccctgccttctctcatgttcat<br>tccccaactcctcactttcctgggcaactcatccagaatgaaccggctcagcaccagcccctccaggaagccttcccagatggcataccctgtcctacaa<br>gaagactcctctgttcatattgccattatgattgaattcaccacactctgtaatacactttggctacagaaactctttgagctctttttcttcatcttat<br>attcccaga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	59	380	67	NA	intron:TF:NM:001063:14/17
0	chr4	178514258	178514563	1000849	0	+	Yb8AC1217; RIP_Alu_chr4_178_02	GGCTATTAAAGCATACACTAGGGG	TCAGCTGCCAGGTATACATCA	SINE	Alu	Yb8	ctatttctatattttcaaaaaagttaatttgttaatcaaaagattgaacttgttagttactaaacagattgtctctaattgttagacaaagaatatttat<br>gtgagcaattgacttttagcaatagcaccataaagataaaggcatattaatttaaaccttaatttttatgggtaaggaaaatgatccatagaaattaaat<br>gaacattgaaagatgatatgacaaaattgttcttttaacctttttgaaatgttcactttttctaaaatgtgcacttttgtacacattattcatctttagc<br>atctttagtactggatcagtagaaatagtattttttaaattttacatgagtggctattaaagcatacactaggggtctttaaattat<font color="green"><u>AAAACCTAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAACCTAAACAA</u></font>atgattaatctctcctaacactaaaatattttaaaattgattactacagtgctggtaatgatgtatacctggcagctgacc<br>gtcaaatcttatgaaggattaaaacataaagtttgcattaaaggtaagatttctatgtatcttataactgtttcatctcagaaaacaatataacaacttc<br>cttttctaacaaccagtatttcttttttcacaaacataaatctgtgagctattagcaaacactgaattgacattccattgaaaagatacacactgaaatt<br>tacagtgtaaaatacattttatgtcctctttatggaaaacacaaacacatacctacacatgcacacatacacacactcacactcacatggaactctatca<br>acatag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	447	128	NA	intergenic
0	chr4	98590666	98590970	1000850	0	+	Yb8AC1219; RIP_Alu_chr4_098_05	GCTTTGACTTGCATCACCAC	TGGCTTCTGTACATGCAGAGTT	SINE	Alu	Yb8	agactagccaaatgtattttaaggatcttttcaaacattctgatggctgagtttatttttattaaggtaatactttacaaactctgacctaattagtctg<br>caaaaatatatatactcatgtatattttgggactcctaaaggccacctggatgtcgcatggatgttatatgttatagtctcatacccagtatattaaaag<br>ttaggcatatgtatgaaggaattgactaataatgcttctattgaagacacaatcttgcagaatcaaacatggaggtttagtttggagaataataagaaaa<br>ccagtaatgtactgacaaaatgtagctttgacttgcatcaccactgatgttctgttctatttttatttttattttaactttttcttt<font color="green"><u>GAAAGTTTATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAGTTTATTGC</u></font>atcaagtttcagcatgaagtcattataatgctaatgaggttatacatattaaaagagttacagtaaagcaactctgcatgta<br>cagaagccaaatttaatatataacaaattggatttattcccaatgtgaagggcttctcattatagataattgctctgaaaagcacatttttttattattg<br>ctatattcctaacaaaggtaaaaaggtatccttttttaaaaaaattgtaagtataatttaaaaaaaaccctatccaagaaaaataaacttcattaaattg<br>ttgataacattttttgatgagcaataaagtttcaatcttaaggattcaaattagaaattattaacatgtatttcctgtaatggtatatatgcttcacctc<br>tgtgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	56	479	161	NA	intron:C4orf37:NM:174952:10/11
0	chr4	68944780	68944781	1000851	0	+	Yb8AC1254; RIP_Alu_chr4_068_02	CAAACCATAGTCCCCCAATG	AGAATCAGTCCAATGCCTGC	SINE	Alu	Yb8	tgttttatctgcaaattgtgttgccaagtgaaagtagaaatctgtggttatctgcagaaaggtgggacccaggaggccccagtagtgacctcacatattt<br>gggtcattcctcaggtttggatcagttctgagtcatgacacttacaatttcactaagcttctctgagcccattttatttccatcactcagggaacaggga<br>gaaaaggtgatttttgtatctctagcacatctgattaatgtcctttgaaattctgaactgtgtacatatgacactttggggaaggattaggagtcttatt<br>atattagagtataagaaaatatcaagattcaattcaaactaaaatgtgatattaacaaaccatagtcccccaatgcatcaacctctattt<font color="green"><u>AAAAAATGGC<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAAATGGC</u></font>atattctggtatagtacaatactggtgtgacctttactaaaagcttacaagtattaattccatactgcatggcaggcatt<br>ggactgattcttttgtttaaaactcacactaccttaggaggaaaagtatcattctcatcagctccatttgatagatgaagaaactgagactcaggatata<br>taatcttgtctaaggtggcacaggaagtggtggctctgtaatatgaacccagggaagccatctttagatcttgtgttaagcgcattaagtgactttgaca<br>accttgaattaattacatatttgaagcagatgttaaagttggtgggagacaggcaggtaggaaggtcatggtgaaagaaacccttaaagaagccctcaaa<br>ggcatctttt	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	467	136	NA	intron:TMPRSS11F:NM:207407:3/10
0	chr4	55998562	55998889	1000852	0	-	Yb8AC1257; RIP_Alu_chr4_055_01	GGGTCTGTTTTGGGTGCTTAATA	GGGATTTTCCCTGGATTATCTT	SINE	Alu	Yb8	tgaagagaagatctgtggtttgggggttgggtggaaggtaaatattcaatgcggctgggattctgcaggtggggagggcaagatctaattacctgctttg<br>cattcttccttggtcagccatctcagagtgcctcttctaagtcacttagcttttcatgcatctaggaaaatggaagctattgttatggagaggcagagga<br>agtcagtggcatcaattcacttagcctcatgccttgaatgagattagtcctcaaaaaaacaaaaaaccaaaaacaaaaagctatttgtatgtgctaggag<br>gggtctgttttgggtgcttaatactgctctgcttttaagtcctgattccaccacttacagttatgggacattggaaaagttacttaaactttct<font color="green"><u>AAACCT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAACTTTCT</font><font color="green"><u>AAACCT</u></font>cattttcccatctcccttaaatgggaataattatagtatcttttctattgagttattatgtgcatt<br>aaataagataatccaaggaaaatacctgacacatagtaactgctccaaaaatctaccccttctttttattgttattgaaaaaagcaaagaatgccctgtt<br>ttttttttttaccatattcctaattattgatgaaaaaacttcattgattatttacaaagagatataacaactttttttttgggcaagacttttaggaagg<br>caaagggacatttacttaaattaagaataaatattttttctctttacttcttttctttctaaggaatactaatagtgcttgccacctcatgggatgttat<br>gaggatgaaatgagaaataaagtactca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	525	202	NA	intergenic
0	chr5	102163374	102163607	1000853	0	-	Yb8NBC615; RIP_Alu_chr5_102_01	GTCCAAGAGTGGTTTTTAATGC	TTCAACCCATGTAGGTATGCTG	SINE	Alu	Yb8	agatcttgggctcattgcaacctccgccttctaggctcaatcaatcctcccacctcagcctcctgagaagctgggaccacagatgcacaccaccacgctt<br>ggctatttttttttcttttgtatttgtagtagacagagggtctcgccatgttgcccaggctcgtcttgaactccagagctgaagcaatctgctggcctcg<br>gcctcctaaagtgctgagattataggtatcagccaccgtgcatggccatgaatagaacatttaagaaagaattgagaatagtttcaaaaggaaaaattaa<br>aataaatatcagctttatactacattaatatttgtttttatgtaaattactcaatgaagtccaagagtggtttttaatgct<font color="green"><u>AAAATCATAGTGAGCTTCA<br></u></font><font color="red">CCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCT<br>GAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTC<br>CGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCATAGTGAGCTTCA</u></font>aaagatattgtaatttttattttacattccactggaatcctagctat<br>aaaaaatcacgcctcatgaaaacagacttggaatatttcaaatttatagacattttcttaaagtaagaatattttaacaatattcaataatcatttgtat<br>tatgaggataaaattaaaaacagaagaaaatattagaatgtatcaggaaggtgtataaaaaaaatactaaaatgttattttattttcctaggatcatagt<br>ggctcagcatacctacatgggttgaatatcctttatcaagaaaatgtttgggaccagaagggtttcaggttttggatttttttttggattttggaatatg<br>ttccattatatttagttggccatcactaatctga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	568	315	NA	intergenic
0	chr5	61293641	61293953	1000854	0	+	Yb8AC771; RIP_Alu_chr5_061_01	GGCAAAGCTATTTGGAAGATGA	GAGCCTAGGTTGAATAGCCACTT	SINE	Alu	Yb8	cctggctacacattagaatcacctgggaacttagcttaacagcaacaaaagggcaccctaatgtgtagccaatggttgagaaatgctgatatacaccatc<br>tcggtagaggtatactattattatactcgttcttcagataagaaaactgagatacacagtctagctatcttgccaaaggtcgcacattaactgcccaagg<br>tgcagtcttaacccagagcagctgagcagatccaactatttatttaatagatactgctatttgccatcactgtgattaatgaatgaagacagagcctagg<br>ttgaatagccacttattcaataagtctgtttttaatatatatataaattcccagcccctccaaaaaaggtctttcaacctgtgtttt<font color="green"><u>AAAAACAATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>ATAAAATAAAAAT</font><font color="green"><u>AAAAACAATTTTC</u></font>tatttcttcatcttccaaatagctttgcccagcatatatatttacatatatataaaatatcaaatgtctttttg<br>catttaatttttaaattgaggtaaaacttacataacataaaattcaccattttaaagtgtataattcggtggcttttagtacattcataatgttgtgcga<br>ccatcaccacgtcgttttcatccaactgccatatggtgatatcgctcccctaaaatattttcagcaacccaaagcctgaaaactcactgtaaaaattcat<br>ggtttagaatcttaaaagtaattatggtttcaagaatatctattaacattgtgaaaacttgtatagctatttgctgttagcagatctaatcttaaggaag<br>cctgtcttttgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	138	NA	intergenic
0	chr5	25275412	25275720	1000855	0	+	Yb8AC1275; RIP_Alu_chr5_025_02	CAACTGCATTTAAACAATTAAGC	AAAAGCAAAGGATCTGTGCAA	SINE	Alu	Yb8	tactgtttctccatatactttgtgccttaactgatatacgatgactataaatagaaaagtaggatatggaataaattacatgtttttgtttgtgtttctg<br>gtctacaatagcaaatctagaaattcatactatgtttattcatatatatgtacatatatacacatgtgcaattgagaaatcaactaagctatgcaaaata<br>tattcaaaattataaattcttacctaatataataagtgaaagcttttctaataaataatactaggttagaaatatataatatctatttaataagtcacta<br>gaaagtcaataatttagtctcatatttgactattttaagaaaatatatatttacagattaatattaattaatacaactgcattt<font color="green"><u>AAACAATTAAGCTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAACAATTAAGCTTCT</u></font>taatttctcccaaatagtgaataatgaaatgaactattcttttattgcacagatcctttgcttttctaccttgaa<br>aatactacattgcacactttattaggtaaaaacaaaggttgcatttcagagaagatacattcacaaggacatacacagggcatctccttagtatgcctca<br>ctgcaaggcacctgtatctcaaaaacaatacctaaatcgaaaattactgtgcattaagaaaacatacacttttagtcactctaaaatcactgtaccctct<br>agatgatagcaattttcaagattctttttgttgcatttctcaacctgttccttgtaaatgtaatcatcaaaataacaagcatctcttctccttatttgca<br>gcatgcggt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	417	93	NA	intergenic
0	chr5	78277740	78278045	1000856	0	-	Yb8AC1282; RIP_Alu_chr5_078_02	AGGAATTGCCTATATTCCGTG	AAGCATGACTGCCAAGTTCA	SINE	Alu	Yb8	actgatgctggaagaggttaagaaacttgcccaaggttacagggctagtatatgttggaccaggatttgacccagggcacgtggccctagggttgatgcc<br>tataaccactaagccatattgcctactcaaaattattaaaaataacatcccaaggactgcttcatacatactaaataatccctgtattacttttggacat<br>ttgggtcattcctaaatatctcaaggtaaagaatcaacccatcatatttctgagttaggaattgcctatattccatgtaaaataaaaatagattttattt<br>ctgagtcatttgttatgcataattttagacaataaaatgaaggaattttttgactgtctcaaaatgagttacttgaaggaagttgtt<font color="green"><u>AAGAGTCATATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTCATATCT</u></font>atgaacttggcagtcatgctttaagttaatatttacagacccctttcccataattatttaactttagaaaagaaaagcaca<br>agttgataaacaagcctagactgactggactttatactctcatgaaatcctgagttttagtttttttggtttcagaaattatttattgagtaaagaggac<br>tggttaggaactgagatgtaggttttggtcttggctggtcagactgtgacctcgctggccatcatttccacatctgtgaaacagaggagttgggctgaac<br>tctagactttgtctagctctaaattaatttaactctaaggctcttgtgtccattagggcgagtttctaacttggcaaatgcacattatcatacctatcat<br>actaac	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	483	165	NA	intron:ARSB:NM:000046:1/8
0	chr5	166150764	166151068	1000857	0	-	Yb8AC1283; RIP_Alu_chr5_166_01	TGAGAAGCATTGGTTTAACTGTTG	AAGGTCAGACTTACCAGAACATTG	SINE	Alu	Yb8	ttgctgagtcctgcactgtaccacagcggttgaaagaattgattctggagtttgtcctctatgtttatatcttgcttgcaccatttaataactttgtgac<br>ctaagctaacttactttggttttctcatttgtaaagtggtggtaataaccgctcctgtctcataaggttgttgtaaggataaaaagaaaacaatttatgt<br>aaagcccttattccttcgtaggaggaataaattggtgtttatagatatatagcatgtatatgtaaaatatttagtattcaacattggtttttagattttt<br>tatagcacaattttacacattaaaacttgagaagcattggtttaactgttgaagcaaaaatgtttatatgataaataatttttcc<font color="green"><u>AAAGAAGTAAACATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAGTAAACATC</u></font>acaatgttctggtaagtctgaccttatacataaggcataaactatgtaagtgtactaaataaataattgtactgtagtgc<br>ctccttatacgcaggtgagtatatcccaagaccccccagtggatgcttgaaactgtggatactactgaacccagttgctgtccatcaaaacgcatttatg<br>ttcatgtcttcatccataaatttaataacctttctatcttaactaagcacttgtcacgcactgtggctgtaagttttacagtttgaggtgcgacagcaaa<br>actgggatgagtttcttttccttcttcacagtttctcggatagatttgttcttatcatagatcttagtaaccctttttgacttttttttcctttaagtta<br>agaac	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	418	98	NA	intergenic
0	chr5	6524388	6524694	1000858	0	+	Yb8AC1290; RIP_Alu_chr5_006_01	AGACCTCCTGTGTGTGGACC	CCCAGAGCTCCGTTCTGTAG	SINE	Alu	Yb8	atggtttttctctcctgagcacatgaggatgcctgagcctggctggtcctcctgcccttctcagggagacggatggcgtgttccatctttgctctctgct<br>acattgtgcatttgggcgcagagacaaattcagaaaggcttctaattatgcaaggaatcgaggtctcatctcctcagcacacttgtttacagcactgagc<br>cctcctctccctctccctccgccacacactggggctttgtcccctctggaacagacactggtcaacagcctggtgtcatcccacagacctcctgtgtgtg<br>gaccaaaggtcctcaacatttagggatggtcccctcacagggggtcggccctctgtgtctgaacgtggccaagccacgacccctgatg<font color="green"><u>GAAAGTTACAAG<br></u></font><font color="red">GAGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAAC<br>CCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGATGCTGAGGCAGGAGAATGGCGTGAACCT<br>GGGAAGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAAAGTTACAAG</u></font>gaggccagtgtgaggaagaattttctacagaacggagctctgggagaaggaagaaatcaccctgcggaagaagtgagttcc<br>ccatcacagtgggtatccaacggctgaacgcccatgagtgaggagtgttgaagaggtctctggatttaagggtaggaggcatgacagagtctatgtcctt<br>tccaactccagcatcctcatggcctcgataccccagacagagtgaagactatgaggccccaagtcctcaagagggagaggggctgctgcctgcaagggag<br>aaggatagagccaaggaagcaagcccaggggcccctgggagacactgggcgagattccagggggcagggtctattcccagaaacgagatggattggaacg<br>gccacag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	479	160	NA	intergenic
0	chr5	126942347	126942659	1000859	0	-	Yb8AC1330; RIP_Alu_chr5_126_01	TCCCTAACTCACTTGAAAAGCTG	TAGTCATCCAAATGCCACCA	SINE	Alu	Yb8	gtaaatatgtatctataatatgtatatgtgttaggatgcactatgaaatgtacttcttaatatgataacagtaaaaaaagtgtgaaagtcactgatttaa<br>tatttgtactttcataagcaattagcaggcacccattgtaacagataaaatccaattcttagattaactaaaaaaggaacatcactatacatgtgaacta<br>atttcaagatatgtgttcaaaaatgtttatgtttattaagaaaaatatgtacttgactacaaagaaaattcttctgacttcttgaagtcaaatccctaac<br>tcacttgaaaagctgaggagtaaaaccaaacaaagacatacacaaaaactcttagttaccttaaataaacttttaaactaggattt<font color="green"><u>AAGATGACTGTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGCGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGATGACTGTCCT</u></font>ttggtggcatttggatgactaatttgaaaggtttttgttaagctgaaatgtagacatatttattaggatttta<br>aaatcttaaaagaggccttttcagggctcatttcgttatgacaacaaccttgttgagccaccagtgagaggaatgacatctccggcatcttaacgggtga<br>cgtcaatgatgggtacttgatggaggctgtcctggtcccaacccttgttctggaaccttcagtggctgcctgggtgaaaattctgcaaagtcagactgtg<br>gagggagagcagcacagaagttctgtggaagtccacaccagcagagtgagattctagcatgggggctgctctaggactgaatggaaaatctaagaacttg<br>catatgcagattt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	456	129	NA	intergenic
0	chr5	32571523	32571524	1000860	0	+	Yb8AC1334; RIP_Alu_chr5_032_01	CTGGCTAGAGTGGTTTCCTGA	AGTCCCTTGCTCAAAATCACA	SINE	Alu	Yb8	atttctttcactctagtggaatttctatttttgattctagtattctagtacattgtacatgtatctgtcaacagattctaaactccctgaaggagacaaa<br>ttaccagtggacaagaacacagcctctggagtccaataggcctggtgcattcattagggtaagtggtgctaggtgctataacagataaacctcaaattat<br>ttgtgacttcacacaatataaccttatttcttcactcatatgaagtcgtttttagtacacattgccatttatggacataggctcttaccttctcatgatt<br>ctttgctgcttaatctggctagagtggtttcctgatgtacacagtgacaaactcagagagacacagctacttactagattgagctat<font color="green"><u>AAGAAACTGATGA<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAACTGATGA</u></font>catatgaacataaatactgtctacaaaatggcagtttcacatgattaaacctaacttcacatgtgattttgagcaa<br>gggactctctaaatccatttctttagctataaaatggggtaccaatactcattccctccaaggagattataaagatcaaataagaggatgtatgcaaaga<br>acttcgcatacaggctgacacagagtcagtaactcaaacaggttaggtatgatttacccaatgcctagcacagactctctggcacatactagctattctt<br>taattatatatatgcatgtatgtatgtataaattgagatagaattcacataccataggctgggtgcagtggtgctgtaatcccagcacttcaggaggcca<br>aggcaggcgga	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	492	168	NA	intergenic
0	chr6	54780323	54780634	1000861	0	+	Yb8NBC290; RIP_Alu_chr6_054_03	ATTGTGGAGGGAAGTCGTTG	GGACTGAAAACCCCTAACTCC	SINE	Alu	Yb8	aaaaaagcatagatagttagatgggtagatgtgtggatggatagatggatgaatggcaggtagattaaaaagtaacacaactttttatcatattgttttg<br>acttagtctgatggctttctttatacacaaaaatgaaatactacttttgaattttaagttttcttataatgctacagtaattctccatgtaatttaggtc<br>tctacaccctagagatttctgtctatcctttctctgttgtccgttagaagcaattagccaatgagtcttgtcacatcatcctttacaactttacctccaa<br>cccttttattcctgctttcgccatccacgttggcatctcatgctagactaggactgaaaacccctaactcctctacctactggt<font color="green"><u>AGAAACTCACATTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAACTCACATTTCT</u></font>aactcatcctatgtatacaaacacgttaattttctcaggtattgttttaatcatgtgattctttgactataa<br>agttatgaatggttcactgttgtgccttatagaatccatagttagcctagcattcaacgacttccctccacaattgaccaaatttaccattacaatcttt<br>ctagctttatcgccatctctttcttagtagaattccatttcccaacaaaactgggcctctagctgtttctgctgtagtgctgctttgccgctgaaccttc<br>ctaaagcttctgctcctattccccaaactcctcttcatgcactattcatgcactattttacaattttccttatgcagagggatttttactccgtcctccc<br>tctttctctttc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	524	196	NA	intron:FAM83B:NM:001010872:2/5
0	chr6	140952904	140953178	1000862	0	+	Yb8NBC568; RIP_Alu_chr6_140_01	AAACCCAACAAATGTGCTTC	GGCAACCTACACAAAGCATGT	SINE	Alu	Yb8	caggagaattaaagaattcttgtaaacagtaatatcataaaattctgtgtctgcagccttatataattttttcttcctagtattctagattcataaaaaa<br>acacaaaaagaacaagtgatcctgagttatagtttgtaatcaagttatttcttgtaatggagacactgaagactcagaatttattaaaatgcagtaattt<br>tattttgataaaacccaacaaatgtgcttctaatagtggtttttcctattgaaggactatacaactcagtgttgtataaatatgatatttaatatagtac<br>atataagattctatatagtaaatatagaataaaaaatacaaagattgctatagcatgtgatctgtggattactcaaggatagtgatt<font color="green"><u>AAGAATAATTAGC<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC<br>CGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTG<br>CGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAATTAGC</u></font>acacatgctttg<br>tgtaggttgcctataaaaataaaaattggaagatgtaaattttttcaacaatagaattatactgggaaaaatttgtatgttcttcaataacttagaagaa<br>ttgttgagctctcctgtagcttttcggcactttgtaaaaatgaaatatcaagaatcaatatttatatttgttaaaaatattaaacaagtcagctttgatt<br>gaacaacatctcttaaatgtccctgttgccagagagttgaatgagatgaacttataggtgcatgttgtgtattttaccagctctggttttaccaaaaact<br>tggagacatgaaaaaagtaaaaggaccactacccagcattcagtaaaataaactagaatgtccacaatgtctttt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	501	213	NA	intergenic
0	chr6	55262035	55262341	1000863	0	+	Yb8AC1354; RIP_Alu_chr6_055_01	TTGGAGGTTTCTTAAATAGATGGT	TCCCAGAGTGGGTCAGAAAG	SINE	Alu	Yb8	ttcttaagtggtttattttgcattctaacaagggggaagctttttttttttttttttctggagtcagagtcttggtgttttcacccaggctggagtgtag<br>tggcttgatcacagctacgtcaatctggaatgcctgggctcaagtgatcctcacacctcagcctccagagaagtttggactacaggtgtgcaccaccatg<br>cccagctaatctttaaactttttagagatggggtcttgctatgttggccaggctggcttcaaactcctgggctcaagtgatcttcccaacttagccttcc<br>aaagtgctggttttacaggcatcagccacattggaggtttcttaaatagatggtaatccaatatgcaaattggagactaaaactatttt<font color="green"><u>AAAAAAATGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAATGCC</u></font>ttaactgtatttgagttcagactccctgagaatgagttttctaatgacaaaatcctcacttttctagtcttgtgttgggctg<br>ctgctttctgacccactctgggaggtttactactggtctgaaactccaatctatctctctactgattattgttaacacagtgctcaaatcttggctccca<br>ataagctgtcttctgaatagcagcagccctaggtggagagataactgaatggaacatttgctaataaagtcatgtacctcgtaaggacattctggtcaat<br>gacagacagacagactatacatcagtggtcccataagattataataccgtattttttatagtatcttttctatgtttatatgcttaaatatgcaaatatt<br>taccatt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	175	NA	intron:GFRAL:NM:207410:6/9
0	chr6	106983637	106983946	1000864	0	-	Yb8AC1372;pAlu6-106983670; RIP_Alu_chr6_107_02	GTTTGGCCTGAACCTAACCA	TCTTTGTTTCCCAAGCCACT	SINE	Alu	Yb8	actggatacttgaaaaattaaatatgaaggtactgactttgaggttattcacaagagagggggctatgaatgtcaaaggggaaaatgaacctttacaatg<br>gaaagatggaggaggcaccactttaaccaagcaatcaaacttggtattgctaaagggcaagctagttagcacatgccacctgctgtgatacaacataaat<br>atatggcactatctatatgaagtatccgtgccaaaactgtttggcctgaacctaaccataccttaagacctaagccctagtagataggaaattcgggcaa<br>cagaagaacatgctaaatagtagcatgagggaacactcagacaaatctagaatgtggcacactctctaagacagctggcctaaatcttttt<font color="green"><u>AAAAGTTAG<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAG<br>CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGTTAG</u></font>tggcttgggaaacaaagatggggtattttagagatctttaaaaagagacttaaaagagacagaacaatcaaacgcatttat<br>gtgaaccttgattggatcctgatttgaaaatgcaaatctataagagacattcctgaagcaattgggaaaatttggtgatggactattgaacagatattat<br>catggacactttgtgaattttctcaagtgtaataatgatacttatgcaggggaataccattagaaagagagtcaggctgaatcctatgtggaatgaaggg<br>tcatgatatctccaatgtacattgaagtgctcagaaaaataacacaaatatggtaaaatgataacaattattgggtcaaagtgaatggtacattggtgtt<br>cactgaacta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	179	NA	intron:AIM1:NM:001624:6/20
0	chr7	37998517	37998822	1000865	0	-	pAlu7-37705191;Yb8NBC412; RIP_Alu_chr7_037_02	CAAAGATGGTTGTTGAGGTTGA	CCCAGCAACTTCCCCTTAAT	SINE	Alu	Yb8	gctggcaatctaacaaaggtgatattgaaatagttttattttaagctcatatcattcaaaatcagctttagagaaatgttttaacgtattccccagtctt<br>ttcttcacttagtcaacatgacttctataagtaatgcacaaatagcatgcaaccagtaaataaaatcatagttgaaaattattatcaattatcctcccaa<br>gtcaagtgcatttgatgtggacttctgtcttctaatctatgagatgggcataataacaatagtagctaattcaaagatggttgttgaggttgaataaaat<br>aatcagtataaaactctggagagaatgtgacacaaaacaagtgctcactgatgtagattgaggttgatactactgttattttctctatctt<font color="green"><u>AAAAATGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATGTT</u></font>atgtgcaaaatgccagggttcatgagagatgtatttattaaggggaagttgctggggtttttttttaaactacatgtatattata<br>cttgacgttgcctgagcatggctagaggtgggtgcatgtttctgcacacgaatgtgagcaatgaggaacagacagagataccttagggaatggtttagct<br>gacgggtccagcagagcccactgagggcactgcctttgtaggcctccaggaccctgctctaatccatagcagattcatacagtcatacaggtttgatttt<br>gttggtccatggagggttgatcaggatctcagggggaaagaagccagaggtagaagacatctaatattttgagtgctgattgcctgcaaagctgtgtgct<br>acacac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	185	NA	intergenic
0	chr7	44962409	44962718	1000866	0	-	Yb8NBC418; RIP_Alu_chr7_044_01	TGGCCGTCAAAGACATAGTG	TACGGGAATAAGGGCAAGG	SINE	Alu	Yb8	gagccacattataataaaagtaaaaagtgttgaaagcaggccccccaaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagc<br>actgtaacatgttcataatggccctaatgcccatgctggaaggttgtgggtttacgggaataagggcaaggaacacctggcccgcccagggcggaaaact<br>gcttaaaggcattcttaagccacaaacaatagcatgagcgatctgtgccttaaggacatgctgctgttgcagttaactagcccaacctattcctttaatt<br>tggcccatcccttcgtttcccataagggatacttttagttaatttaatatctatagaaacaatgctaatgactggtttgctgtt<font color="green"><u>AATAAATATGTGGGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AATAAATATGTGGGTA</u></font>aatctctgttcggggctctcagctctgaaggctgtgagacccctgatttcccactttacacctctatatttctg<br>tgtgtgtgtctttaattcctctagcaccactaggttagggtctccccgacccagctggtctcggtaaaaaagaaacaggtgaaattgattgtaatcatat<br>tttatttaaaatggttgatctaaaacattataatttcaatgtatcatcaatatgaaaatgatcgatactacattttacattgtgtgcactatgtctttga<br>cggccagtgtactctttacacttactgtacttctccagtggactcgctgcacttcaagtgctcagagcacgtgtgggtgccagagtggacagcatagagc<br>ttcggaggcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	854	528	NA	intergenic
0	chr7	57364907	57365217	1000867	0	+	Yb8NBC620; RIP_Alu_chr7_057_01	TCACTTTCCCCAAGTCAAGG	CTCATAGACTAAATTTGCCATCCTG	SINE	Alu	Yb8	tgaggcaggaggatcacttgagcctggtggggtggaggttgtagtgagccaagaatgcaccactgcactccagcctgggtagtgggagagaaatcatgtc<br>tcaaaaaaaaatatatagaatcactttccccaagtcaaggcctcgttttctttgagggagttgtaaaaagttttaaccaaatttttcaattattttatta<br>ttattttttgagatggattattcctgtgtcacccaggctggagttcacccaggctggagtgcagtggcacaatcccggctcactacaacttccacctccc<br>agattcaagccattctcctgcctcatcctcctgagtagctgggattagaggcacccagcaccacgcccggctaatttttgtattttt<font color="green"><u>AATAGAGATTGGG<br></u></font><font color="red">GCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AATAGAGATTGGG</u></font>tttcgccatgttggccaggctggtctcgaccgcctgacctcaggtgatccacctgacttggccaccgaaagtgttg<br>ggattacaggtgtgagccaccacaccctacctcagatttatatatcaggatggcaaatttagtctatgagtttatcatttatttcatcctcagatttaaa<br>ctgttgaacccaaaatgtagagatgaatctctaaattcaactgttttatttggcaagaaggacttgtcatttggggcatacacacagaccaggtggcctt<br>caatatgtccaaagaacaaactggagattggaggttttgtgtgtgtttgtttgtttgttttgtttttttgctttgttttgttttgttttgatggagtctc<br>actctgtcgcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	750	426	NA	intergenic
0	chr7	37477291	37477604	1000868	0	+	Yb8AC877;pAlu7-37184419; RIP_Alu_chr7_037_03	TGACCTAGGTAACTGCTCCTAAA	CCCGTCTGTATTTTAACAGTTGG	SINE	Alu	Yb8	ccctcaaagtaaaaaaaaattaataatacaataaaacagtaaaatctcaggttagttcaaatggaactggggatacacattagaagagctttcatttgag<br>gaccctaaattgctaacttcagtcattacatcagttattttaattcacagtcaatcataactcatccccgtctgtattttaacagttggtacttctcctg<br>tactggtttaagtttcatttttaattaacaaatagtaatcattcatatttatgaggtacaattggacgtattgatacatgtatacctaaggaatgatcaa<br>atcaggctaatgaacatatctatcacttcaaatatttagcattcctttgtggtgggaacatttaaaatcccctcttttagctgtttt<font color="green"><u>GAAATATACAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>GAAATATACAATA</u></font>tataattattaactattgccaccatgctgtgtaataaaatcaccagaacttattcctcctgtctgactgaaac<br>tttctatctgggtttgaccaacatctcctctttccctgccaaccccacctttcctcttgttttcttgaagaaaagacatataaagcaaactaattctagt<br>caagactttaggagcagttacctaggtcacttgaagaaaattaaatacaaaatgcatctctttttatgatttcagcaagatagtttaataaagaacctga<br>atagaaactactgaatcgggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggaggatcacgaggtcaggagatcgaga<br>ccatcctggctaac	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	763	436	NA	intron:ELMO1:NM:014800:1/22
0	chr7	42604638	42604965	1000869	0	-	Yb8AC931;pAlu7-42311324; RIP_Alu_chr7_042_02	TCCATTCGAAAAGCCTACTGAT	GTCTACCTGAAGCAAAAGTAAATCC	SINE	Alu	Yb8	caatttcagaatgaaaagctgtatgtgaatggccaagaggctgagcaggtctttggcaaatacaatgaggtagaaagacaaaagttgcagtttagagacc<br>aggaaagaaagaccctggtaaaaatgccagcttttcacttactatcctaaaggctacatcttagaagtaatggtaaaatggaaagaagagtcctcacaag<br>gactgaaaccaaatttgagtcttctaagtttctaatagattaatataatgtgactctagtttagttgtctacctgaagcaaaagtaaatcctattattct<br>taatggaacatcatataacaccttaaaactccattctattttctacaacacaatgtctatacacaaacaaaaataatcaggcatac<font color="green"><u>AAGAAGATAATAAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCAGAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGATAATAAT</u></font>taatcaaagcacagcagaaaaacatacaatagaaataaatcagtaggaaatttgattt<br>tgataaatgatatttgatttatcagacatgaacatttaaataactatgcacatatactgtgtgaaatggtaaactgaatatactcattgcccaaaattga<br>taaatagattgaaaaacataccaatcaaaatatcagtaggcttttcgaatggaaattcataaaatacataaaatatgtatggaaatgcaaaggatctagt<br>atagtcaaaataattttgaaaaagaaaaaatattggagtatttatactacataaacagaatagagtatggaaatatacctatactttgtggccacactta<br>tttgacaatgtgccaaagaaactcaata	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	687	346	NA	intergenic
0	chr7	70567078	70567388	1000870	0	+	Yb8AC1384; RIP_Alu_chr7_070_01	CCAAGCAAGAAGACTGGGAG	TGTGATTTCATCCTCCACCA	SINE	Alu	Yb8	actgcactcaagcctgggagacagagtgagactctgtctcagaaaaaaaaaaaaaaggatactatattaccactaaactatgttcattccaggaatgcaa<br>ggatagttgaaggttcaaagttgaccaatgcagttatcccaacagcttctgttggattaatgacaacatctctgctgcctggctcagtgtgtgcccacac<br>agctggctaactagttacctgtcttccccaggtggttttttcacagcctgatggattcttcttgcccactgcctcccaccacaaaaacaatgagaacacc<br>aggtattgcagcaattaaagagtttaataattgcagtgccagccaagcaagaagactgggagaaattttcttaaatccatctcctc<font color="green"><u>AAGAATTTGGAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAATTTGGAGGC</u></font>tagggttttataagggcactttggcaggcagggggctgggacactgaaacaactgattggtggaggatgaaatca<br>cagggtgtctaacatcgtctttacacaattgagtcagttgccaggaggacacctcaggaccaggtggcttcgcttggtctgctgaaatgctaaatctgaa<br>aaataactgtaaagaccagttcaataggtttcacagtagtgatgttatctacggaagtacttggggaagttataaatcttttttttttttgagagagaga<br>gtcttgctctgtcacccaggctggagtgtggtggcacaatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctccca<br>agtagctggga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	460	135	NA	intergenic
0	chr7	3815201	3815507	1000871	0	-	Yb8AC1402; RIP_Alu_chr7_003_01	TGGTCACAAACAACTGTGGG	TTGAAGGCTGTTTCCCAGAC	SINE	Alu	Yb8	tctatgattgtcctttgcacaccaaattgacaatgtctgcttacaagtttctctcttctgaagacagacagctcctccaaagcaaatgctactcattcgt<br>tcattaacttacactcagtcatgtattcattcaacagatagttactgatcacacagcatacatgagttgctatcatatttctgactccagtgtctggcac<br>tttgatgcgtggtaggtgatgaatgaagaatcctgtggacaatgcagggtgggaaatacgttacacgtgattaggatcacagttagggactggtggaaga<br>ttcactcgtttcgagaatcagtgcaaatactggtcacaaacaactgtgggaaagacagtcaagactttatcaaataattttttcattt<font color="green"><u>AAAGAGGTACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGGAGTGAGCCGAGATTACGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAA<br>GAAAAAA</font><font color="green"><u>AAAGAGGTACTA</u></font>ataaataaaaatgttatgaaaggctgatttagaaacatcagtgtgaatgaccagtcaagcacatatgtgtcagagctggag<br>atacatctggtctgggaaacagccttcaaatagaaaaaaaaaaataaaataaaaaaaaaggctttctttgaaagttgagaaggcaacaaaacaaagccac<br>aatctgctacaggtaaaatgtaaagtattaggttgaaccataggcagttgccactattccattgcttttgacttacaaaatgacaattacatatggtcca<br>acttaatagaaaccaagagggccaaaatagtgaagaaagactattaggagctcaaaaaccaaacaccttaaactatttctaagcttctaatttgaacttt<br>atttact	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	181	NA	intron:SDK1:NM:152744:4/45
0	chr8	137716830	137717140	1000872	0	+	Yb8JW649;pAlu8-137401126; RIP_Alu_chr8_137_01	TTTCTTAGATGTCTGGGAGTGCT	ATACTTTGGGTTGGAGCTTCTTG	SINE	Alu	Yb8	cagtggcttgagttatttaaaaaaaaaatatggatcgtgcactcattcacttgtttatacatttgttttcttagccagtccttggaaaagggtaagaaat<br>aaaatctgatgaaaaggtgttgaaaacttaaaaacagccttgttactaaaagtagcattttgattgtgaaatgcacttcatatatacatatctcagtttc<br>tttatctgacaaatggtgatacaaaaatgtattaatgagaaaattctaatttttatggagaactccaggcctctttcatcttatttgggagaggagaaaa<br>aaaatcatagttaagattcaaggaaaaggacaaaaacttatgcatagcatactttgggttggagcttcttgatctagtaaagata<font color="green"><u>GAAATGAATAATTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>GAAATGAATAATTCC</u></font>ttttttattaatagtgagattaatggaataagagaagcctaaggctggccttccctttggaaaggagcactccc<br>agacatctaagaaatgtccagatgggagccataatatggctaaaatgaagtaagactcgtgattttaggagataaagatgcctgtcacaatttattttta<br>ttttttttgtggactcttcttgctattagagttccctttttagtgtataatttaaagatatatatgagaaaaatatcagttaatcattgtaatataaatc<br>acaatttggggctgctgttatgtaaaatatatcatttagaaagagcccttgataattccttctccagctaaacaaagtctacctttgcagatttaaccac<br>atttgctcttt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	466	140	NA	intergenic
0	chr8	75875309	75875631	1000873	0	+	Yb8AC963a; RIP_Alu_chr8_076_02	TCTCCTGGTGTAGTCAATTCAGA	CTGCTTAGTATCCCAAACCACTG	SINE	Alu	Yb8	atcccaaaccactgaattttatcttgagtatttaatagttaatcaatatggcatcctcattataatagcaaggaacaaggaaaggaaagtaatttataat<br>aaaactgcatttctgaggccgggcgcggtggctcacgcctgtaatcccaacactttggaaggccgaggcgggcggattacgagatcaggagatcgagacc<br>acggtgaaaccccaactctactaaaaatacaaaaaaatcatccgggcgtggtggcgggtggctgtagtcccagctactcgggaggctgaggcaggagaat<br>agcgtgaacccgggaggcggagcttgcagtgaagcgagatcgcgccactgcactccagcctgggagacagagcaagactccgtcttaaaa<font color="green"><u>CACACAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTACAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAACAAAAAAAACCAAAAAAAAC</font><font color="green"><u>CACACAAACA</u></font>aacaaacaacaaaaaaactgcatttctgtcagttaatactctgaattgactacaccaggagaaaaaa<br>tgaagtgtttcgatgattgttgaacatatttataataaaacatttgggatgaagagaataacaacaattagaagaaaagtgaaagtgtcagaaaaagtat<br>taacaaagcaaagtaatttgtatgtaataagagaaaaatgaaaataattggggtaagactattgttccaagaaaattaatagctgctgaaggggagaaac<br>aaggaagtataatattcttgcaaatatactggactttattttcaaatttaagcatcaaattcttgacattatgttacgagacaagcttttgatagcaaat<br>atttttgtctaaaatcacaccat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	804	471	NA	intergenic
0	chr8	75876949	75877264	1000874	0	-	Yb8AC963b; RIP_Alu_chr8_076_03	GACATCTTAGGATGGAGGGAAAT	CCTATACAAATTCTAGGTCAGACAG	SINE	Alu	Yb8	aaatcgttactttttttctgttactttttaatcttgacaaagaaacctgtcaagattaaacattctacaaaaaaacagttttaaagttggcaaaaaatat<br>atatggcacttttaagatttttaatgaaaaatttgaaaattgtaagcacactgagtggagtattttgaaaaatctcattaaaagaagaaagttctagttg<br>acaattatagaacagcacaaataacaaattgtagtgagccccatactgctggagaaaatttaatattataataatccaagacattattaggacatcttag<br>gatggagggaaatacaaattatataatttctgtgcctctgttatgatattttgttcaatatttgatattatatagatttttgatttaatt<font color="green"><u>AAGAAACAGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACAGA</u></font>attaatatgtgaaattgtttgacaaaggtttttatgtattaaaatatatcaatagtttcttttaaatgtgtaat<br>gatatgcagattttcttaaagtgaagaaaattaccactggtttatcaataaagttgttactttaaaaatgtctgtctgacctagaatttgtataggtttt<br>tttagaaaattagatgtgataaatttataaatattggatagtaaataatatgttctcatgtggaggctattaaaaaatatgatctttgtacttaaagatc<br>catatgaacttaaataggaggttaggatattaattaatttgaaatagagttggaacatactagccaacttttacagaaagtgttaatcgagctaaaagat<br>acccttgagagcaaag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	606	280	NA	intergenic
0	chr8	52367516	52367691	1000875	0	+	Yb8AC1415; RIP_Alu_chr8_052_01	CAACATGCCTCGGAAAGAAT	AAACACATTTGCCCACACAA	SINE	Alu	Yb8	ataggagtttctcttttctgggaatctcaagcaaaaattaaatatttgctaaggtgttaaaaatgcctaatgattgattctaagtttggggaagggggat<br>caaccattcctgagatgaacatattctggaaagtggaaataaattaaattaatccaattcaacaataaatgtttaatttaattcctaacaatatcgaatg<br>tcttaagtatattagtaacatactggatgttggaaagatacagagatgaacaaacacactcctccttgtgtgctcctactctagctgcatgaacagagga<br>cagaacacatcatctgtaaaaccacaacatgcctcggaaagaattgtctcagagttaggtgtaaatgtgataggagaacattctggc<font color="green"><u>AAGAGGTAAGGGA<br></u></font><font color="red">AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAG<br>CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGGTAAGGGA</u></font>aagtataggga<br>aagttattataataattgaaataaatgttccgaggtaagtcagtggcagtagaactggaaaaggagataatctgatgcatgcatggaactaaatttttag<br>agaattgtggaagaaggagtagcactagagggtgaatcagaggttactggaggagagtaatgataccaatagagatagcaaacacaggatgctgtgggtt<br>tgtgtgggcaaatgtgtttgacagatgtaaagatttacatgtgaagataaaaacaaagtcctggcaatgtccattgaaatctcaggaaggatctcagcaa<br>taaagactataaattttacatgaagtatgaaagctgaaggtttgggaagagctcagatggaagaggaaaaaaatgt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	495	306	NA	intron:PXDNL:NM:144651:9/23
0	chr8	69417685	69417989	1000876	0	+	Yb8AC1432; RIP_Alu_chr8_069_01	CAGTAGCTGGTGGGTTTGGT	TTCTCAGCCAGTCATGTTGC	SINE	Alu	Yb8	ggtgatctgcctgccttggcctcccaaagtgcatggtgagccaccatgcctagccccaaattgattttcacaggggttgtgccactttacattcccacca<br>gcaagtatggagggttccaatttcttcacatcttggccatcatttgttatggtttgtctttgaaattatagccatcttcatgagagtgaagtagtatttc<br>attgtactttttatttacatttttaaatgactaattatgtcgataatgtattattgaatattagatcattattacttgaattttgtatcattctttcatt<br>cactcaaagaatgccagtagctggtgggtttggtggtaagaagttgaacaaattctcttttgattgctttcattttctcactg<font color="green"><u>AAAGAATGAGCAACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAATGAGCAACATG</u></font>actggctgagaatcaggcaagggagaggtattgaagttaactgaggaataaaaatatatctgaaccaaaactgaaaaa<br>ctgaactagttggaattcaattaatctagcaaatatatatttttttactttcaaaagttgttatgactgtatcatgcatcaaaatatataaagaataata<br>taatgaacacctaggtaactaccatgtagctaaaaataactcatcagtgaaaccaacctctattgcatggtagccaactccatctctattctgaatttta<br>actttaaccccttggagtgtttttgttttttttgtttttggttttgttatgttactacacacacatacacacacacacacatgcacatgcacacacacac<br>actca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	420	98	NA	intron:C8orf34:NM:052958:4/13
0	chr8	106181411	106181723	1000877	0	+	Yb8AC1440; RIP_Alu_chr8_106_01	AAACAACCCAGGCTGAAATG	AAAAACCCACTGATTGGCTG	SINE	Alu	Yb8	atttaaaaacctaaaagtgttttcaagtttcacttatccttaattcataaatttgctttttttcttataaaatttatagccatataaccaactatatctc<br>ttattttgggggagaaataaaaatgaagccgagagataacttttccactaaattataacagttgtatagaatttcatgaccaggttaaaaatctaacaag<br>tctggctccagagacttttacctaaatcatttatgaaaacaacccaggctgaaatgagttagcagatgcaacaaaaattatagtactctcaaaaccagga<br>gaaaactaaacaatttaaaataaattattattttaaatatttttaaatgattgaagatacataagagggaatagaaatcttaacg<font color="green"><u>AAAGAATATGATACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGAATATGATACC</u></font>acaaaaaatactagacagacttcaaacaaataaggtagaacatctgaaagtaaaatatatatatatatatat<br>atatatatatatatatatatatatatatatatatatatatataaaattaaaatagaaaatgcaatggactgcttaagtgatagccaggcacagctaaaca<br>gggggtgagaaaatggggagacagatctcagaaaaagtcctaaaatgcaaccaagagcaataagaggttggacacatgaaaaacagttaagtgacgtgga<br>caataaaatgaaaatattaagcattcatctaagtttgtgtgtgtgagaatagagagggaagaaatatctttgggaaaaaatagcagcaaatatccagaac<br>tgaaaaagacatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	980	652	NA	intergenic
0	chr9	77524013	77524360	1000878	0	+	Yb8NBC627; RIP_Alu_chr9_074_01	ATTCACCATGAATTGCCAAG	TTTCTTTGATGAGGGGAAGTG	SINE	Alu	Yb8	aaaaaaaaaactcacccaggacagaggaatggcagatttattgtatttagataaatttctgtctagcatcctgtgaataggagcttgagatgatattgta<br>aatacatggcttctcttaggacataccgtggcgttccacgccaccaatagggtgaagtggattgtgcatttcctgccaagcagccaatgagagtcaaaac<br>tgggtctaaaatactgtgctgtaaaaagaacttaagagctagttgtcagttgtgtttattatgctataaacttttaaacatcactttcctgatcgccctt<br>agattgctagtttagaagtagattgatgattcagagttcttatcatccttcctgagatattcaccatgaattgccaagttatttttaagaaatca<font color="green"><u>ATGTG<br></u></font><font color="red">TGGCAGGTGCGGTGGCTCATGCCTGTATTCCCAGCACTTTGGGGCACTTTGGGAGGCCAATGCAGGCAAATCACTTGAGGCCAGAAGTTCAAGACTATCC<br>TGGCCAACATGGTGAAACCCCGTCTCAACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCA<br>GGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTC<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGCTGGGCATGGTGGT</font><font color="green"><u>ATGTG</u></font>cctttaatcccaactactcaggaggctgagacatgagaatcgcttga<br>acctggaaagcggaggttgcagtgagctgagatcacgccactgcactccagcctgtgcaatagagcaagattctgtccccccctcaaaaaaaaaaaaaag<br>aagaagaaaaagaaaaaaatcaatggatctttctttccctacctcacttcccctcatcaaagaaaacaaattttaactattctagtgttgtaaaactatt<br>ctaagtaattcagctagttcctctctctacacccacatactgcttttgtctgtaaaatacaacaagtgttctgggtcagtttccaatgttctatgcagtg<br>cctaaaatggtgggcactagaaggagaaactgagtgatatgactgact	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	607	254	NA	intergenic
0	chr9	41038344	41038654	1000879	0	-	Yb8AC1472; RIP_Alu_chr9_040_01	TGAACTCTTTATTGGTTGCCA	CATTCAAGGAAACAATGGGG	SINE	Alu	Yb8	ggataattttgttcacaaatatagatgcaaaattctatgctgcgttaaagctattttaaagagcatattttaggactagtgtttatttccttgtgtctaa<br>atttcctgttttgcatttgcttcagctaagattgttttgggctaaacttatcttcctacacagacccttgatagcatgtaaatcaaaataatcataggca<br>tatttaattatatgacatttgttgtctctacactaaagtttttctaacattcttaaattttgtctacataatgaatatatttttaacagaaaaaaaaact<br>ataggtttgattgcctgcttatttaaataaaaagagaaagaagagatagaagaactatgaactctttattggttgccaaacaat<font color="green"><u>AAAAATACCTTTTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAATACCTTTTTGG</u></font>gaaaaaagtaaaccccattgtttccttgaatgtgcttgttctttcagctcagtcctaagagtggatgattact<br>gagcacagggccctgagatgaactgagggactcgcatctcattcaagcctcacaaagcagtggaaggattaacgttttcttcattttataaagagcacac<br>tgagactaagaatggttgattagtttgcccaagttctcaagagtagtaaaattttgagccgttaatttaaaacagaccatctggaggtagactagagctg<br>agaatgatctcaattaaaggaaggaattctgtcactttgtgaagttttatgaagagataagatagaaaccaacctactgagtattaaacaaaaggctatt<br>tcccgaaaaca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	412	81	NA	intergenic
0	chr9	71703162	71703466	1000880	0	-	Yb8AC1483; RIP_Alu_chr9_068_01	TCTGGAAGAAGCAGGACTCA	CTAGCTCTCCGCAATCCATC	SINE	Alu	Yb8	gtaataaagtacacaattcttatacaacctacataagcaagcactacatttaaggtagcgccttcctcctcttgttttctgaggatgccctactctgtaa<br>ttgagtagcctctaattaactatcttaacttcattatactctgcgacttaccctgaattctttcccaggcaagatccaagaacactcttggggtctggaa<br>caagaccccctttctggcgtcaggactgggcaccagatctggaagaagcaggactcaggccgggtgcgttggctcatgcctgtaatcccaacactttggg<br>aggccaaggcgggcggatcacctgaggtcaggagttcaagaccagcccagccaacatggcgaaaccccgtctctactaaaaatat<font color="green"><u>AAAAATTAGTCGCCG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAATTAGTCGCCG</u></font>ggtgcggtggctcatgcctgtaatcccagcactttggaaggccgaggcggccggatcacgaggtcaggagatagagacca<br>tcctggctaacattgtgaaaccccgtctctactaaaaatacaaaaaaattagccagtcatgatggtgggtacctgtagtcccagctacccaggagcctga<br>ggcaggagaatcactggaacccagaaggcagaggctgaagtgagccgagatcgtgccactgcaatccagcctgggcaacagaacaagactctgagaagaa<br>gaaggagaaggagaaggagaagaagaagaagaaggactctgcaggtggcacacaaaattagatgaaaagaataaggggaccttaaagggggaagaaaaaa<br>atggg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	988	668	NA	intergenic
0	chr10	13258023	13258320	1000881	0	-	Yb8AC1519; RIP_Alu_chr10_013_01	GCCACGATAATATGGAAAGTGC	AGCAGTTGAGGGATTTGTCC	SINE	Alu	Yb8	gcaaacaaaggtgaacatttttctagataatgtctcattagtttagacactctaataatacttttgagtctcaaataacacactagtgagtctggatcat<br>ttagtgtgtaaacccccaagttaaagacttgcagaattaaaaatgatgatcccattcctccgaggcaccgaggtctggagtactaacttacgattttatt<br>aggtcatgttctaaattgtaatttttcatgcactcagtacggaacagaagggcactgaggggcaagatactctatatttatgttttgtgttatattcctc<br>tgtcctttaaacattttaaaccatgtgtattcaaactatttttaattacaaaagccacgataatatggaaagtgccaaaacttttt<font color="green"><u>AAAAAGTGTTAGTA<br></u></font><font color="red">TAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCACAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AA<br>AAAGTGTTAGTA</u></font>cattgtaagatcacagagtatatcaaaaccatcagttgtagactagaatattcatatttaacaaatttgcttatggacaaatccctca<br>actgctagagacagaacttttaaactaaagtgatttacacaattagaatggtatcctgaaatcattactgaaaaaatagtgtagcatgtcctttagaaag<br>tcactacagatgtggccggggtgtggtggctcacacctgtaatcccaacactctgggggccgaggcaggtggatcacctgaggtcgggagttccagacca<br>gtctgactaacacggtgaaacacagtctctactaaaaacacaaaaattagctgggagtgtcagtgggtgtctgtaatcccagctactcgggaggctga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	453	141	NA	intergenic
0	chr10	63743629	63743794	1000882	0	-	Yb8AC1529; RIP_Alu_chr10_063_01	GAGCCCAGGGGATGAATAAT	CTTCTGCATGAACCCAGTCA	SINE	Alu	Yb8	caggaagagtaacctaagtctccttatgtagatatgcaaggataatgtctatgctttcctcatgcagtcagcgaacctttatttggttcctactcagtgc<br>caaatgctgtgttcagcagtgggtttacatgggtgaacatgacagcacctgctctcagggagctcccagtcctatcctccattgatggagaaaacagatg<br>agactccagaccaaggaggagttggtggctcccaaagaaacagtggagcccaggggatgaataattaaaacgtaaagcacatcccagagctcagcacttt<br>gaaggtgtttatgtcccagctctgaaaaagatgttctgtatttcatctctgagtctgagattttaaaagctatggttggtacaacagt<font color="green"><u>AAGAACAAAAGG<br></u></font><font color="red">GGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCC<br>GCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACAAAAGG</u></font>gggtttaaaaaatataatttgg<br>attatgactgggttcatgcagaagaaaaatggatacatcaagtacatagtctaccatttaaatatttcctttttcattttttttttttctggcacttggc<br>ttgccacaacttccatggggcaagtgcttcatacgcaggtcagcagccgagatctctctcaataatgaacgatattactaatataaaatttgcctcaact<br>gaacttcaaacctgatgtgatttttttttcctcaggtgggatgtggacagagaacatctatataataggtgttatcattcaggaggcctagactgaacca<br>atactttgcagctaaatgtaatttgcgaagcacaatttaacagctccatttagcgacttttcacaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	379	201	NA	intron:ARID5B:NM:032199:3/10
0	chr10	70998125	70998431	1000883	0	-	Yb8AC1531; RIP_Alu_chr10_070_01	TGCAAAGTGGAAATGTCACC	GTTTTGTGGACCTGGCAAAC	SINE	Alu	Yb8	ccttaaacttttttgtccacgaaagtaggacaccctgggagaagatttcaggtccagtttgaatgaaagacgtgctgagatgtgcaactgagccgcagaa<br>acttcatgcctacgtgcatcccccatggccttctcttctctaagctgaatcaccccaatttttttaaaacattgcttctgcagccttttctaataattta<br>aaggactattactctcatctgagtggtttgaaatatatggtagcagaaggagtaattattgaaaagttagagctcttggattcatgagacattagacaag<br>tcgtttaacctctctgagcctcagtctactcctctgcaaagtggaaatgtcacctccctacctctctcaaaggaatgctctaat<font color="green"><u>GAAAATACCTGGTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAAAATACCTGGTGTA</u></font>ttatacatgcagaatgcatggtttgccaggtccacaaaacagaactaacatggtgtaaccttgcaggattgtctcag<br>gaacttcatttcaacttagaaaaatgattcccaaccaggcagagtggcccgtacctgtagtcccagctacttgggagcctgaggcaggtggatcacttga<br>ggccaggagttccaggcctgcctgggcaacatagcgagacctcgtctcttaataaagagaaagaaagaaaaatggttctcaatttgcattaccaatcatt<br>gcttacaaatggtgtttcctgagtttcgtgtctgaaatcgcaaataatcatagaatgtttcagactggaagagaacttggaagttaaaagagaatcgccc<br>aagtcgt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	429	106	NA	intron:HKDC1:NM:025130:4/18
0	chr11	88549099	88549735	1000884	0	+	Yb8NBC409; RIP_Alu_chr11_088_01	TCAAAACTTGCGGATTTTCC	TGCTGAGCTATACTGGTGCAA	SINE	Alu	Yb8	ggcccataattttgatgtatagaaggttcaagattggtcatctgcatctggtcagagtctcaggctgatttcacttattgtggaaaataacagaagggaa<br>gcttgtatgtgcagagatcacaaggtgatagaggaaacaaagaaagaggggaggtgttagcctctttttaacaaccactgcttgtgggaactaacagagt<br>gagaactcactcatctctgacagtgggcattaatctattcatgaggaatcggttcccatacccacatacctgtcattaggccccacctccaacattgaaa<br>tcaaatttcaacattaaatgtttgggggacaagcatgcaaaccagagaaaaaggtcacaaatcagaggcttcagcccctgcctt<font color="green"><u>AAGAAATTGGAAACAG<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAGAAATTGGAAACAGGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCCTAGGCAGGTGGATCATGAGATTAGGAAT<br>TTGAGACCAGCCTGGCCAACATAGTGAAGCCCCATCTCTACTAAAAATACAAAAATTAGCCAGACATGGTGGCACGTGCCTGTAGTCCCAGCTACTCAGG<br>AGGCTAAGGCAGGAGAATTACTTGAACCTGGGAGGCAGAGGTTGTGGTGAGCCGAGATCATGCCACTGCACTCCAGCGTGGGCAACAGAGCAAGACTCCA<br>TCTCAAAAAAAAAAAAAAAAGAAAAGAAAAGAAA</font><font color="green"><u>AAGAAATTGGAAACAG</u></font>aacaaatgaagataaaaataagcagaaaatagcaaataaaaatcaaagca<br>aaaaatcaatgaaagagaacacagaaaaacaatttaaaaaatcagtgaatcaaaaaagctagttatttgagaaaaatcaataaaactgataaatctctat<br>ccagattggtccaaaaaaaaaaaaaaaaggaaagaaaaggcacgaataaccaatatgagtttttagagaagttatattgctacaaattatataatattaa<br>atggatcataaaaaaacagtgtaaacaattttatgcccacaattttgacaatttaaataaaatagaaaagttccttcataattaattctggaagaaacag<br>ataactctaacagatctatctatctgtctgtcgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	61	731	406	NA	intron:GRM5:NM:001143831:2/9
0	chr11	6881360	6881966	1000885	0	-	Yb8NBC622; RIP_Alu_chr11_006_01	TCAAAACTTGCGGATTTTCC	TGCTGAGCTATACTGGTGCAA	SINE	Alu	Yb8	gctgcatatatgtcttcttttgaaaagtgtctgttcatattctttgcccactttttaatggcattctttggtttttactcataaatttgtttacattcct<br>tatagatgccggatattagacctttatcagatgcctaatttccaaatattttcttccattctataggaagtctgtttactctgttcatacttttgctaat<br>gcagcacattttacttgcaaaataatgtaaaaaaaatattgatttcattaataggagactgattcaaaacttgcggattttccgtagattacaatggaat<br>acaatgtaactggggatatgcattaatatttatgtaaaaacttaatatggacacataacacccaaatatttctttctaatacagtcttccattaga<font color="green"><u>AGGA<br></u></font><font color="red">GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGGA</u></font>attccc<br>ctgcacaaactctctctctttgcctgctgctatccatgtaagacgtgacttgctcttccttgccttctgcctgattgtgaggcttctccagccatgtgga<br>attgtaagtccaattaaacctctttcttttgtatattgcccagtctcaggaatgtctttatcagcagtgtgaacatgaactaatacagtaaatttgcacc<br>agtatagctcagcattgctgaaaaatacctgaaaatatggaagtgacttcgaactgggtaacaggcagaggttgaaacagtttggagggctcggaagaag<br>gcaggaaaatgtgggaaactttggaacttcctagagacttgctgaatgaccttgacaaaaatgctgatagtgatatgaacaataaagtcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	451	357	NA	intergenic
0	chr11	58462445	58462747	1000886	0	+	Yb8AC1551; RIP_Alu_chr11_058_01	TTTGGGGAATCCTAATGCAA	TGCTGCTAAGATGAAGCAAAA	SINE	Alu	Yb8	gacatcagtcttctcaggaccttggattggaacttacaccattggctttccttgtttggctttcctgtttccagcttgctaactgcagatcttggaaatt<br>ttcggcttccatagttacatgagccaattctttattatgaatctatacatacctacatctatatctttatgatgatataaataaagacatagatgtaggt<br>atgtatagatttataataaagaattatctttcttctattgctttttttcctttggggaatcctaatgcaatagataactggttgaataaattctggcaca<br>tacttatgatgggatataaaaagaaaaggaaatgagaaatatgtttactgttaagacatatttcagggatatatgtttcaggaac<font color="green"><u>AAAACAAGTACAGAG<br></u></font><font color="red">GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAACAAGTACAGAG</u></font>cagtgtgtatattttgcttcatcttagcagcatattaaaaagtggaaggataaaccaaaactcataaaaatgcttaatatag<br>ggggagggagaataaggataaaagcgataggtataagtgctagatttctttggctataacttgtcttatagatttgactttgaaacaatataaatgtttt<br>tcttaaatataaaataaaattagatgagatattaatgggtataaaaataccattagaaagaagaagatctagtgttcagaggcacaatagggtaactata<br>gttaacaacaattcattgtatattttaaaacacataagaaaagtagaactcggatgttcctaacacaaagaaatgataaatggttgaggtgatggatatc<br>cca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	50	500	182	NA	intergenic
0	chr11	19382775	19382776	1000887	0	+	Yb8AC1583; RIP_Alu_chr11_019_02	ATTGGAACCCAAGTCCACTG	CCTGGTGTATTTTGTTGGTGC	SINE	Alu	Yb8	actgcccctgtcctcgcaaagctcagtccaatggagcaaacaggcatcaagtggatacttaaataaatgtctacttaggtcccacaaactggcagatgga<br>atataccagagaagatggagttcttgacaatggaaaacaggaagcataatgatgaggtggaaaaaactgtgacaactggagtgatctgagtttcaatcct<br>ggcctcagaaagtcctgggaaaaagtccagaaatcttgggaaaattttgtaacctcgctaaactggcttagatactataaaatgaggatggcaatagttt<br>ctgccttgtagggttgtattaggttagataaaatgagtaaagtacttcgcacaacacctggtgtattttgttggtgctgactaaa<font color="green"><u>AGTGAGCTCTTTTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGTGAGCTCTTTTTT</u></font>atgtctctcagcctctgctaagcattttgttattgaggttttagtgggtctactttgggactaccatttcttgtc<br>catagaaatctgagaaaaagtcacactttacagtggacttgggttccaatcccagcatgtcacctctcgagtgacaggcatgactgggtgtcacatctta<br>tccttgggtatcagtttgctcctggactggtgtgagattcattgacttcttggtctatctagccttttgtgggcatttggtatctaggttgcttttgggg<br>atggggggatccttctgcacagaaggtaggccaaagttccgggctctaaagtgtcttcctccctggatgccatccacagtcctgaggtcactacatgaag<br>cccagggagc	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	169	NA	intron:NAV2:NM:001111018:1/38
0	chr12	127502639	127502852	1000888	0	+	pAlu12-127226481;Yb8AC737b; RIP_Alu_chr12_126_02	AAGCTTGCAGTAAATGACAGAGG	GTACTACCCCAACTCACTCATGG	SINE	Alu	Yb8	tcagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaagtaccactgttacatggtaacaatttctctttgaggggtatcaaaagtgctgggcatcatcag<br>aagcaagatttgttgttaactggttgagggggattctccgtctttctccactgaataatctcaccacgagaaacttagtgcttctctttcttgttttttg<br>gggcagtgtatctggctgtagtaggagtgcggggtttccctaatgcttcatcttgtataaccgaacaacattaccaagacagtattttttatgcagcaat<br>cacaaggaatttcccaataaagcttgcagtaaatgacagaggaactctgctctacgatgactccagaaggaggctgcttgtgggtc<font color="green"><u>AAGAACCCAGCTGC<br></u></font><font color="red">CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAACCCAGCTGC</u></font>actttgagctgcaatcattccttccttcctttattccaaagactagccaatggctgagctcccaacaacctg<br>caccacggagatcaggatctcggaagggcagggaagtgtgggtgcagccatgagtgagttggggtagtaccaggagaagaggccttcaggttcagggcga<br>tcattacattctgtaagatctgtgctgtcagggagagcaggctccagctactccacctttttcattttagtgatacagaaactgagtccctgagatgaac<br>aatgaattaatcaaggtaatggagtttattttcaaagaattcagaatgattttcaaaaacaattcagatcatgttgctcctctcctcaaagtcttccaat<br>tgcttcttaactcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	451	223	NA	intergenic
0	chr12	61736541	61736799	1000889	0	+	Yb8AC1613; RIP_Alu_chr12_060_01	CCTTCCTTGCTTTTTGACCA	AAGCCTTGCCTTGTGCTTTA	SINE	Alu	Yb8	tcccccttccttgctttttgaccacacagactatcattaagatttctttccagttttcaggacaagaacgactctcattttggcgttggtaaaatgactt<br>acaaagacttacaacgtgtaattgcttataagtttttcagcttgaatgtttggtcttggccagtcagccaatcgttactcaaccttgaaagattcaaaga<br>acttcattaaggagtttctgcttttgttataaagaaaagagggctaggtgtggtggcttatgcctgtaatcccagtgctttggaaggccgaggtgggagg<br>atcacttgagcccaagagtttgaggttatagtgagctatgatcatgtcactgcactgcagcctgagtgacaaagcaataccttgtctt<font color="green"><u>AAAAAAAATTAG<br></u></font><font color="red">AGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCG<br>CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC<br>TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAATTAG</u></font>atcatactctttttgccaaaatataaaat<br>aataaaaataattaaagaaaatagggctaatctattttacaggcatggatcacagtaaatatgcttatcatttttttatcatgaaatatgctgagaattt<br>acataaatagcctttataaaatatgaagaacatttattataggacagctgaaggatttggaatgttaactacagaataaagcacaaggcaaggcttttcc<br>aataaatgccttaggaatctcagtggttcacggctaattatcattatttcatttaggagaggtcaggtatcttacaattgtgatataggtactaccataa<br>tggtcactgagtaatatttatgtgaagttactgaaggagctctcacctttgtagaaata	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	892	621	NA	intergenic
0	chr12	10703502	10703814	1000890	0	+	Yb8AC1617; RIP_Alu_chr12_010_03	CATTCGGGTCTACTGCGTCT	GTGTGACAGAGCCCTGACCT	SINE	Alu	Yb8	ggcaatcagtgtgtgaataggtaataaggctgactggaaaacaaactagtcagacgaggagaggatttcaaatggagatcaagtcacataacactattgc<br>tttcactcttactttcctcttctcataatcttccaaaagtaaactctggagaaaaacatcagaggatttttcaaatcaaacaaggagtcgaataatacat<br>tattttgacaagagttatgtgaatagaaaccccaaaataaagatcttacaaagcctaaaacatatccaaatttataccttctttagatcattcgggtcta<br>ctgcgtctcagtgaattaggagtgataagtgcatattccacaggagataccttcttgtcattctcttctgagaaataaagtgaaac<font color="green"><u>AAAGATTGAGCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGATTGAGCCTC</u></font>atcacaatagtgcgtagagatcagaggtcagggctctgtcacacaggacggcctggagtttgtcgtaagccag<br>tgaagtagacggtggtggctggcaggttcatcacccagttatcctagcgcctcacaatcttcacaaaggcacccatgctgccagtgaagcgcgtcctggc<br>ggcacagcggataccatttggagacaggtgcaggggctccaggacaccactgcggcacaggaggccctgccccgtggctcggagggaggagggcgattcg<br>gcttaggagaggtccagagtctggagtgaggcttcagtcccagcagggcgctgagagcgcaggcggaccttcaccacgtccaggggtgtcctggagatgg<br>aggtgacggctgc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	483	156	NA	intergenic
0	chr12	29573421	29573752	1000891	0	-	Yb8AC1635;pAlu12-29473598; RIP_Alu_chr12_029_01	AAAGTTTATGCTCCCGCTGA	AGAGCTGGAAGGAAAAAGCA	SINE	Alu	Yb8	ggacagaaatacaaatgtgctgccagccatgcttggagagcctaggttggttggtagctgtgctgcatctgcaatgtcatggccctggctagttagtctg<br>cagcacccagacaacattattatagaggctccctggccacaaaacagtgggtcctggcagcagtgcattctaactttaggtctgtgcctgtgcctgtggt<br>gcagggtctctgagactgcttgttcaagggctcacaatgggtgtacccatctgctctccctatgtcacaagaaacattaaagtttatgctcccgctgata<br>tagtcttcaccttgcaaatcaatgaacatattaggtgaatgaaactttctgtccttcaacaatacacataccactaatagtttttcatttt<font color="green"><u>AAAAGCTGC<br></u></font><font color="red">TTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAC<br>AAGGTGAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCTGC</u></font>tttttccttccagctctttttaaaataagtgactaacaatgctgccctctctttcctca<br>tctataaaatggagataatgatgtcttaacatgtgtgcatcagcttctgaacatatcacctagagcactggagttgctaaacggtgggtctccttcctcc<br>ttgctctcctctactgactgatcatcatacctgctcccaaaataaatatagaaagttctgaaaaattttaaagaatgctcttggaaagaaaattttttct<br>ttgatttcatctgaatcttgtttccatgtgatattgagacattatctgaaaattccttcctcagtttaaaggttgctcagtactaaaattctgatatttc<br>taatattggtctcccagaagtagtgagatggt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	480	139	NA	intergenic
0	chr13	110812509	110812806	1000892	0	+	Yb8NBC437; RIP_Alu_chr13_109_01	GGCGGTGATGGTAAAACAAC	CTTCCCCAAGGAGCCTTTTA	SINE	Alu	Yb8	atttggccctaagtaggaaagaaatcctatcacatgctataatatagatgaaccctgaggacattatgctgagtgaaacaggccagtgacaaaaggaaaa<br>atactgtatgattccacttacatgaggtgtctacgggggtcaaattcacagggacagaaagtagaatggggggtcaccagaggctggcaggagggatgtg<br>gagtcagtgtttaacagggacagagtttgagtttgggaaaataaaaaagttcaggagacggatggcggtgatggtaaaacaacactgcaaatgtacttaa<br>tgccactacactgtgcactgaaaaattattaagatggtaaatgttatgttatgtccattttaccaaaattaaaaataactttt<font color="green"><u>AAAAAAATTCATAGGGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AA<br>AAAAATTCATAGGGG</u></font>cagggatgattcagaaaacaatgtcttaaaaggctccttggggaagctgttactttttaaaaagaaagattgagcaacactgttc<br>caacgcttgctgaagaatcgagtggcatcaccttgctcacaggaggaaaggcaaccaccacagtgagtcaggcaaaatataaattatctctgcaagcctg<br>gcattatctcaccatggttttgcaccacaattttaaaagagaatagctgactcttttttctttttgagacaggttctcactctgttgctcaggcaggagt<br>gcagtggtgtggtctcagttcactacagcctcaacatcccaggcttaagtgatcctcccacctcagcctccctcgtagctgggaccacaggctcacac	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	183	NA	intron:COL4A1:NM:001845:49/52
0	chr13	70459072	70459372	1000893	0	-	Yb8NBC450b; RIP_Alu_chr13_069_01	TGAAATCTATCTCGTAGGAAGGCTA	CCGCTGGTTACCAAAAGATT	SINE	Alu	Yb8	aggagtttgctaacatatgcaagcaatgtaagaaactcaatgggaattgatattttctcttttagcaataacacataatgatgttaaaacaactaatttc<br>cagaacctacattgtaggtaccataaacaaagtatcattaaaatgaggcttgatggaaaaataaaacagcaaggagaacttgagaaattcaatgaagtgt<br>aaagaaaaaaaaaaaataacacctacataataatacgtaggtaagtgtgaaagatctgataccagctcctgaggtcccatttccttatagcagtttgtac<br>aaacaacgccgctggttaccaaaagatttagtgtaacttataaaaatacaaaattattggaatattatttaagttagatgcagagat<font color="green"><u>AAAAAGAAAAGAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGCGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGAAAAGAA</u></font>aaagtgctgtagtggtattaaaactattatcagagctgtctgaaaaagaaatcaaactataaaagtctatagccttcctacgagat<br>agatttcaatttgactctaagttttctggaggccaaataaaaagagaaatctgatcaatttcataatttacaacatccatgataaaagcaaaccaattta<br>ttcaggagaagtgcaattattcttgctactaaaacctgaaagaaacttctcccaagggtcaccataaagaggacactataaaatataatgaaatatgcct<br>tgaacagtatctttatgacagataccactaggagtttcatagagctgttttttatgacatccctcactatattttgatggcctagctatagagttctgtg<br>t	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	61	500	186	NA	intron:KLHL1:NM:020866:4/11
0	chr13	107924550	107924861	1000894	0	-	pAlu13-106761081;Yb8NBC463; RIP_Alu_chr13_106_01	GCCAGTGCTTGGGTTTTAGA	CTGGCAATGAATTTCCCTTT	SINE	Alu	Yb8	ttattctcatttttatattgtagtttatacacgtatatgtgtatatgactccgactttccttagttttaacaaatgtgttgacattttgaggcaacgcac<br>gatttacaccctttgttttcttgcctgaaagttttctcaaggcttttgatgattttgagagtctgtgaaatgaatactacctttggatggctgaaaatat<br>attttgatactcatttatactttctgatgatcctacaaagtcattacatgaactgtatcacacaaaacaggaactattaagcaaactgacttcactacag<br>ttatgaaatgaacagaattttataaggaatcatataaatgtaagtgaagagatagctccaaaaaatactggcaatgaatttcccttttt<font color="green"><u>AAAAAATTCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAATTCTA</u></font>aggtctgcttattttgtcagcaaacatgttaattttatatacgtaccagtgtgtatacatttgtgtgcatatattat<br>atacatgtacaaatatgatattgagacattcatgtctttgcatgtactttatgcttattttattagccttcaaatgaagtacactttctctctaaaaccc<br>aagcactggcttaggaagttggagacccgcctgaatgtgagtcctgaggtctcatgattattcttacttataacatatagagagttatgtgctcatatta<br>attcatttgtcagaaagttcctcgacaaagcatagtttgccatgaagcttaggtttgaaattggagtgtgagatatttgtatatataaatatataaatat<br>atatatatatat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	56	543	220	NA	intron:FAM155A:NM:001080396:1/3
0	chr13	95251134	95251441	1000895	0	-	Yb8NBC564; RIP_Alu_chr13_094_01	TCTGAGACACATGGATTACTTGC	TGAGGAACCACCTCCTACCA	SINE	Alu	Yb8	tcacgcccggccatgtactttcattttcaataaatccctgctttcgttctttcgttgcttcattcttttgttgcttcattcttgccttgctttgctgtgc<br>attttgtccaattctttgttcaaaatgccaagaaactggacaacttgcagtcaagaccctccactggtaacaaaagtaggagctcaaaattatttcatga<br>ataaatgtatataaattattttcatttaacaacaagcttctataacatataaggaagttctcataacagacctcatcatttagaaaaaaaaaatattgag<br>gaaccacctcctaccatatacacagcattttcagtatttctggctgaccaggaatatgctggaagtattaatattttcggatttttt<font color="green"><u>AAAAAAAAACTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAAAAAACTGC</u></font>aaggattctttattatgcaagtaatccatgtgtctcagaaaaaaattcacagtcaaaagtatataaagtgggctgggcg<br>cagtggctcacgtctgtaatcccagcactttgggaagtgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaact<br>catctctactaaaaatacaaaaactagccaggtgtggtagcatgcgcctgtaatcccagctacttggaggctgagatgggagaatcgcttgaacctggga<br>agcagaggttgcagtgagtcaagattgtggcactgcactccaggctgggcaacagagcgagactgtctcaaaaaaacaaaagtatataaagtaaaaatta<br>aactcccc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	464	143	NA	intergenic
0	chr13	98721251	98721556	1000896	0	-	Yb8NBC570;pAlu13-97557786; RIP_Alu_chr13_097_02	CAGGTGTTGTGGAAGGGAAT	ACGAGGTGATGGCAAGAGAG	SINE	Alu	Yb8	ctaaaaatacaaaattagccgcgcttggtgcccgtaatcctagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcggt<br>gagccgagatcgcgccattgcactccagcctgggcgacagacagagcgagactttgtctcaaaaaataaaaaataaatttaaaaaaaggcttcacaagaa<br>ttaaggcccttgaagagtgagaaggaggtccgttttcacactgctgataaaaacatatctgagactgggtaatttataaagaaaaagaggtttagtggac<br>tcacagttccacgtggctggggaagcctcataatcatgacagaaagcgaagacacacctcacgaggtgatggcaagagagactcag<font color="green"><u>AATCAAGCAGAAGG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATCAAGCAGAAGG</u></font>ggtttctctttataaaagaagatggtctcgcgagacttattcactaccacgagaacagtatgggggaaccgcccccatga<br>ttcaattatctgccactgattcccttccacaacacctgggaattaccggagctacaattcaagatgagatttctgtggggacacagccaaaccatatcag<br>aatgagaaagcaattcaaggcagagagtaaaacctgtgcatagctatggaatcctaaatattctgacgtcatcaaggaactgcaggatgccccgcgttcc<br>tgaagaacagggtgcatggtgggagggcaggtgctggcaagtccgtgtggagtgggcacggcaaacacccagcaggtagcggagtgtggactctgttctc<br>ttccct	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	478	158	NA	intergenic
0	chr13	25270563	25270883	1000897	0	+	pAlu13-24200462;Yb8AC1674; RIP_Alu_chr13_024_01	CTGAAGCTCCATCTCCCAAG	GAACTCACACAGCCCCTCTC	SINE	Alu	Yb8	agaaaccacatctcttacgtaaaaccaaagtgaaaatagagtgcgcaacagtcctaaaagactgttttaggatgagtattattatactaataatactagt<br>gataataggagctattctgtgctaatttccacaagtattaaattattcattcgcacgacaacactgtggggtggctagaggatgaggaggttgaggtgcc<br>gcgcatcagtgcacagtgtgaagatggggttagatgatgcctccatcagcagcaggacttggagccctgctgaagctccatctcccaaggtaaaggcatg<br>cccagttgcaaaagggagaaaaagcaggttccatgaggcctcatgtacaagttggaggagaaagtggctacacagagtgggact<font color="green"><u>AGAAAGGGGAGAGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGGGAGAGGGG</u></font>ctgtgtgagttcctgctgaagaggtcggaggtgctgtctggatgctgttagggtcattttata<br>tctacacatgagcggtgctcagcctcaccagggctttagatgtcatggccttggaaggagacgtctctgcgggaaggaaataaaatggaaagcctgtgtc<br>ttattgattagaatggtgatgccccaaacacactggtctgttaagacatttgaaacagtttacggcaaattggaaaatgttttataaagttttatataaa<br>gatgaatgtatttaatttaaaagattatcctttgtagccaccatgattaagggcagggactctggagcctgctagcctgggctcaaatcccagctcagcc<br>accagatagccacctattgct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	480	143	NA	intron:ATP12A:NM:001676:11/23
0	chr13	78594165	78594474	1000898	0	+	Yb8AC1675; RIP_Alu_chr13_077_01	TTTCAAGATGTCATGGGCTG	TGACATTTGCTTTTCCAGCA	SINE	Alu	Yb8	taatgatgcaaacagtgccagactctttgcattgatcagatcacctctggaatattgttttaagttctaggtgccttaaagcatatggatatatattcat<br>attagattgctaagagttgaagtcatgtcatagagaaaacaaacaaagaatgtttgctggggtgagggtggggtagcattatagctatctttaaatatta<br>aatgattttccaagtggaatgtgaccaaggactggtatacaagatataaggttagggtgaatgaatgataactaagccagagcatattttttttaacatg<br>aggaagatatttttaacagacagcgctctttcaagatgtcatgggctgcctcattaggaggcaagtgtttagctctaaaggcattc<font color="green"><u>AAGAAGATGCTGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGATGCTGGA</u></font>aaagcaaatgtcagaaaagaaatgtcagaaacaaatacaagttatctcattcctgagaaaactataactttcctgg<br>tagatccacaactttggatagggatggtgaaaggtgccaataattttgcagatggtctcaaaggcagcaaaggcagatctgcttttatgggtgtttttaa<br>gctgttcagtctacttaatttgctactgtaaatgttttgcatatttaaaaattgggcttaaatttttttaaaaataactttggctcaccctaatgaataa<br>ctcccagaattaaaaaattgaatagcaaaaacaaagtagttgttgcagagaaccatagtcgtgggaaccatagttgtccttgcttttatttattagtcac<br>ataacctttg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	409	85	NA	intergenic
0	chr15	61964761	61964874	1000899	0	+	Yb8AC734; RIP_Alu_chr15_059_01	CAAATGTAATTCCAGTGGGTTG	GGCTCACAAAGCATGATGAATA	SINE	Alu	Yb8	aactccacctcacccctttcaactaacttttacaaataaaacagcgctgtcatacctggttaactgtttatattctcatatcatatcacaggtaagataa<br>attctgaatgaattagttgactaaaaaaaaaaacagaaaaattaaaagaataaaagtgaatatttatgagaatccttaagatgatatgaggtactatgct<br>ataaaatgaagaatgtgttacaaagtaaaagatcaacaaatacaactacctgaagacctaaagtgttatatagctaaagcatagtgtagaataaagcaaa<br>taacaggctcacaaagcatgatgaataaagcattggatgaatagtataattatataaagaactcacaaaattattttaaagcattaat<font color="green"><u>AATATCCCAATA<br></u></font><font color="red">GAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATATCCCAATA</u></font>aatatgtagataaagggcatgaaaggatagttcatgaaagagagtatactacagtattagtaaatatttataaa<br>aatattcaattcacttaaagaaatagaaattgaaattattcacctgattttgataaaaaaactgataatacccattattgatacagcttcaggaaaattg<br>atattcttaatattgctagtggccataaaattattacaatatatttgtaaagcaatttagcactcttaatcaaaagctatcaaaatatttttaattcagt<br>aatgacacttctgggaatctagcctaagaaaataatctgatgcctggaaaaatactgatgcatgaagatgtccaattcagtattataactgcaaagacat<br>gaaactatacacaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	653	527	NA	intergenic
0	chr15	34746989	34747302	1000900	0	+	Yb8AC1691; RIP_Alu_chr15_032_01	CCTCAGTTGACGGGGACTAA	AAAATCTGCTTGAGGCTGGA	SINE	Alu	Yb8	gctttttcttcccttattcttttcactaagacctcagcctaatgttgaatagaaatggtgagaaaagacatccttaccttgttctcaaccttaggggtac<br>tcatcagtctttcacaatttagtattgtatttactgtaggttttgtcaacttgaaagtgttccttatctttctgatttgctaagatctttataaccataa<br>ctaacaaatgttgaattttatcaagtgcatttctgcatgtattgagatcctccaggtgctgggatgtcagtgctcctgttgcagggccaggcaacaagat<br>ttgtatgtgttttcacacaaaaagctgaatctaagctgcctacataggcccaggaataaatgcagcaccctcagttgacggggactaa<font color="green"><u>AAAATTCCTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGCTCAGGAGATCGAGACCATCCTGGCTAACAAAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTCCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAG</font><font color="green"><u>AAAATTCCTCCT</u></font>ctccagttggagacgtgacaaggaatctcggttctgctctgattctgcacaccgagcacataatccagcctcaa<br>gcagattttgaactctaatctgaaatacaatcataataatagagttcctgatttcagacattaacatcgaagttgtttttgagttcattatagaatcaaa<br>ggctaaaatattctgaagagacatttctgccatacaggccacatgctatctttaattgagaataatggaagctaactctcctaaactcttcttactgtat<br>tgaaatttaagtagactatatgatagagcatatattttttcattcattcaacaaatatttattgaatgtgtctgttaggggtccaggcatttttcaggct<br>ctgatatgatgaaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	441	115	NA	intergenic
0	chr12	128932256	128932541	1000901	0	-	Yb8AC1695; RIP_Alu_chr12_127_01	TTCAGAAATGGGAGAATGCG	GTTTGGCCTTCATAAGCGAG	SINE	Alu	Yb8	gacctcagacaaatgagtgagcccggccaagagcagaagacctgcccagcggagcacagcacaaatgacagacacggaattgcaaggtaaagaaatagtt<br>gttgctctaagtcatgtggttttcggagtggtttgttaggcaaaaagctgcataacagttcagtagctatatcattagggttcaaatcccagctccacca<br>actactagttatgtgattttgaaacagtgatgtaaccttcaatgcctcccaccaattttcaccagtgacaacaacaacaaaaaaaattgtcttactttta<br>ccacatctaacattcagcaggttatttgtttcagaaatgggagaatgcggtgggatcgttttaggaattatattactatgcttttct<font color="green"><u>AAAAAGCACTTGA<br></u></font><font color="red">CCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGC<br>CGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCACTTGA</u></font>a<br>ataatatcatacgtctaggagtgtggtgactctgactcttactcgcttatgaaggccaaacgttaaatgagaaattcagtgagccagttggcaatttgaa<br>attaatcatagtgggagtatttacacctgagaaatgggcaaatgctatgcataagggtttctattttcccctccctgaagagcaggttgttaaatattga<br>ccagaaaacctctgtatgccttccttatatactaatcaaggcaacaggtatagccttttctttcataaacatttgttttagaacctcagcatccatttcc<br>ttccctgatggcaccaaattattttcagggaattacctcttgcctgttgtataacgtcttgataagacagtaattttaagggaccg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	434	133	NA	intron:TMEM132C:NM:001136103:2/9
0	chr15	58912866	58913166	1000902	0	-	Yb8AC1703;pAlu15-56491897; RIP_Alu_chr15_056_01	TGGTGAATGTTAACAAAAGGACA	TGCCAAGTTAGAAAAGTAAATGGA	SINE	Alu	Yb8	tttgcttttatctgttgtttgttttctttttctgaagtagtgttggttactgctctgttattggcagattgaactacttttttttttttttttttttttt<br>tttttgagacagggtctcgctctgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacttccacctcccgggctcaattgatcctccca<br>cctcagccccctgagtagctgggactataggcatgtgctaccacacccagctaatttttgtatttttttttagagacagagttacgccatttgcccaggc<br>ttgtttggactacttttaatagtaatttgtgtggtgaatgttaacaaaaggacatactcaaaggacatactaaaaagaatcct<font color="green"><u>AAAAAATACATATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAATACATATTCTT</u></font>tagttacttattgtgaaaatgtaactatcttccatattttaaaaatcttaactttaaatatttagttaatgtggaatccatt<br>tacttttctaacttggcaagttataactatttcacttgtcaaatttactttggtagcagtgtaagcaattgtttgcacaatactttttttttttttgaga<br>tggagtctcagaaaaacctgtcacccaggctggagtgcagtggcatgatttcagctcactgcaacctctgcctcccaggttcaagcaattatcctgcctc<br>agcctcctgaatagctgggactacaggtgtgtgcctccatgcctggctagttttttgtatttttagtagagttggggtttcactatgttggccaagttgg<br>t	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	487	169	NA	intron:ADAM10:NM:001110:11/16
0	chr15	67534480	67534799	1000903	0	+	Yb8AC1707; RIP_Alu_chr15_065_01	TCATTAACCAGCAAGCGAAA	TATTTGACAGAGCAGCACCC	SINE	Alu	Yb8	agtaaatattcatttccttcttcccatctcactttttttcacatttgtgacagcactcctgactagaggtaggttacagatgcactgaggagttagtaag<br>atacattacaatcaggaaataaccatctcctttaagctgctctagccttgcccttccaccccagaccaccccctaaaataaagttgaaatttttcttttc<br>cactgctaaggcatatgctgagacagaagagaaggcaattaggaaaattataggaggcagcagagtctgacgtcagctgaaaggaaaagtagctattatg<br>aaagaaaagaactgagcaaaatatgacttaggaaaaattcaaaacctagagttttcattaaccagcaagcgaaaagacagactttt<font color="green"><u>AAAAATCATATCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCATATCGG</u></font>attcatactgttgcaagcaattacaatttcttacccacaacttcatgagaatgtcatacaaggtgg<br>gtgctgctctgtcaaatattttgcagtagttgtgaaaaggttagtccctaaatactgaaagtagattatactgctccagtggaaagggactttgtagcat<br>ggtagtatttaaaggttaaaactgtgcaacattagagttgactttacagacaaatgtcaggaaactcatatctgagattccctgtgtaatcataccccag<br>tcttctggtgcaagtttatgcagtatttgttgcagtttatatgacaggtcgatcactggagtagtatggacttgctgaggtaagagtcactggagtagca<br>tagacttgctgagggaagag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	56	465	131	NA	intron:AAGAB:NM:024666:1/10
0	chr16	15915492	15915810	1000904	0	+	Yb8AC1737; RIP_Alu_chr16_015_01	GTGCTTAGTGGGACCTCAGC	CCTGCCATTACCTCCAAAGA	SINE	Alu	Yb8	atactatctacagtgaaactttggtctctgttttaagtgatctttttctggaacgaattatcttcagatagtaaaaatttccttcatttcatgccattta<br>gttcagttagtgtaatgaaaggtcacgtaacaaaatgttaatggtgatgagttttggatgatagaatcataggtgccagcaagttctcttttacttaaat<br>atatgtttaagtttttctagaatgaatatacaatattaaagactttttcaagttacaaataaattttttcagagcactgtagaaatgcttacccatctgt<br>cgctccccctccttctcctttgctaacagaattttctttctttttggtatttagattaaaatgtgcttagtgggacctcagctccagaaaagaa<font color="green"><u>CCAGGA<br></u></font><font color="red">ATTGCTGGGTATGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAGACAGATACCTGACT</font><font color="green"><u>CCAGGA</u></font>gccatcactttacaacctgagattacagctccaagattgcctttgcaaggctccacctgctggtctttggaggta<br>atggcaggccctgcctagaagggccaagattctggtcctacctgtggagtctggctcactgtcagaaagttggggcacttatacctgagtccctctatct<br>tgggggcggggtcgtggcatctctcaggcacacctggattccggcctcaagaacttccagaattgggctcctctcaactcccaactcagatccctgggtt<br>cccacctgttggtgccctttcagagggggtgtgagttttcgagtttcttgtactcttcgcctgacctggtacacttgtttgcattaactgcctagtccct<br>ctgtttgacttgggggtgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	446	136	NA	intron:MYH11:NM:002474:3/41
0	chr17	67206311	67206629	1000905	0	-	Yb8NBC48; RIP_Alu_chr17_064_03	AGGGAACAGGTGATGTTTGG	GAGGATGCAAAAGCATGTGA	SINE	Alu	Yb8	tgagtgggtaaaggaaatatggcatatatatatatatatatgtggcataaatatgtggcatatatatatatgtatatatatgccattgtatatatataca<br>tatatataatgaaatactactcatccataagaaggaatgaaataatggcatttgcagcaacctggatggagtcagagaccattattctaagtgaagttaa<br>ctcaggaatggaaaacgaaacatcatatgctcttgcttataagtgggagctaagctatgaggatgcaaaagcatgtgaataatgaactttggggacttgg<br>agggaaggatgaggggttgaaggataaaagactacacattggatgcagtgtatactgctcaggtgatgtgtacaccaaaatctcag<font color="green"><u>AAATAACCACTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAATAACCACTAAA</u></font>taatttacccatgtaaccaaacatcacctgttccctcaaaactattgaaataataataataataata<br>ataataaagtaatagcataagctctacagatggcttttaaatgactataaaatttgtagatagtgtgtgcacatataatcctaaaacctaatgtacagtc<br>atgtgctgcataacaatgtttttgtcaatgatggactacagacaccacagtggtcacagaagatcataatcccatatttttactgtaccttttctatgtt<br>tagatatgataagatagagataccattgtcttacaatttcctacagtatagagtacagtaacatgctgtacaggtttgtagtctaggagccatgggctac<br>cacatagcctaggtgcgta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	511	178	NA	intron:ABCA10:NM:080282:10/40
0	chr17	19543429	19543725	1000906	0	+	Yb8AC1747; RIP_Alu_chr17_019_01	TACACGTATGTGAGGTGCCC	AGAGGGGACATCCTTGCTTT	SINE	Alu	Yb8	taagccatgtttgtgccactgcactccagccagggtaacagagcaagaccctgttttcccctaaaaagaaaacattgtgctaaggaaaataagccatatg<br>caggcctattatacaaggacacttgtacaagtacgcaaagacacatcttgtatgattacacgtatgtgaggtgcccagaatagtcaaaatcataaagtat<br>agaggttattaggggattgaaagagagcaagaggggaattattgtttatgggtacaatttctgtttgggatgatgaaaatgatctaaaagtgaatgatat<br>tgatggttgcagaacattgtgaatgtacttaatgtcactgaattgtgcaccttaatggttaaaatagtaagttttatttattttatttc<font color="green"><u>AATAATAAAAA<br></u></font><font color="red">TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA<br>AAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC<br>TTGCAGTGAGCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>AAT<br>AATAAAAA</u></font>tgcctcacttggatcacaaacatctacaaaattctacagataacatattagtcaaaagaagctgcatgccttcctgctaatattaggaacaa<br>agcaaggatgtcccctctcaccactcattttcaacatcgtaactgaagttttagctaatgtaataagacaaataaaggaaatgtatacatattaggaaga<br>aagaaattaagctgcctttgttcacagataacatggttatcaaggtagaacatcccaaataatcaacaaaaaagatttctggaactaataagtgattata<br>gcatggtatcaggatgaaagttattatacaaagtcaattattttactatacaatagcaatgaacactttggatttgaaattaaaattaaaaacacca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	662	358	NA	intergenic
0	chr17	42924520	42924813	1000907	0	+	Yb8AC1758; RIP_Alu_chr17_040_01	CCAGGAGAGGAGGGCTAACT	AAACAAGGGTTCTGCCAATG	SINE	Alu	Yb8	tccagcctgagtgacaaagtgagaccctgcctaaaaaaaaaaaaaaagaagaaaaagaaaagagagtttgccgtatggttaggcttagaaggtatcccat<br>tggacagggcacggtggctcatacctgtaatccctgcactttgggaagccgaggtgggcggatcaagaggtcaggagttcaagaccagcctggctatcag<br>ggtaagaccccgtctctactaaaaaaatacaaaaaattagctgggcatggtacacacctgtaatcccagctacttgggaggctgaggcagaattgcttca<br>accaggacctgggaggcggaggttgcagtgagccgagatggcaccactgcactccagcctgggctacagagcgaaactccgtctcaaaaaaacaaaa<font color="green"><u>AAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAG</font><font color="green"><u>AAG</u></font>gca<br>tcccattggcagaacccttgtttccagcccagggatgaaggtagccagttggtaattgtgaagaacctgcctggaaagagatggacctggaaaaacagga<br>gcagctcaggaaccagaatgtgttccttagtactcatgtgcaaaatatatgctaaattacatgcaaatcaatgtccaatcattataatctctggcaattt<br>ggtaactaatgctgttacactatctggtctaggacatttctggctccctggggccagatcctgctctgtagctcccacaggagaaaccatcacagaccaa<br>aggccagcgggggccccagcactcaaggactgtttctcccaccaccatctgtggacttttccagctgtttttcttggcccaaggatcacaccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	999	706	NA	promoter:HIGD1B:NM:016438
0	chr18	39187998	39188321	1000908	0	+	Yb8AC1789; RIP_Alu_chr18_037_01	GGGTATGGGGCACATAAAGA	GCTGAGAAGAAAAGCAAAGAAAA	SINE	Alu	Yb8	attattttgtatttctctcttatttttaacctcccctatattttgttgagcaaattagggtccatcagcctggaattttcatacattcccacatccaaat<br>ctttcaaccttcctacataaatattcttctcgccatttttttcctctaactcaggtgattaagtttctctcctctaccaaggggactcgtcatatgtgct<br>ctgcatcacaaatcccctcaccttctcaagggctttgctttctcaattgccccctttctctcctacatcaacttctctcttttcaccaaattgttcatat<br>tttccctgccttcttcaccacctctgggtgtgtgtgtgggggtggggtgggggtatggggcacataaagataatccttcgtacatt<font color="green"><u>TAAAAATAAAATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>ATAAATAAATAAATAAAATAAAAA</font><font color="green"><u>TAAAAATAAAATTA</u></font>aaattaaataaaatctgcctcccataactttagagtttcctacaaactacagtacattttct<br>ttgcttttcttctcagctaaacctgtgaaaagaattgtctgacatgctgtctctacttcttttttatgatttttagagacagggcttcactctgtcaccc<br>aggctggagtgtggtggcacaatcattgatcatagccactgcagcctcgaactcatgggctcaagtaaccctcccagcccagtctcccaagtagctggaa<br>ctacaggcatgcaccaccatgcctggctaattttttcccttttttttttttttttttttttttttccataaagacagggtctccatatgttgcccaaggt<br>ggacttgaactctgggactcaact	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	467	135	NA	intergenic
0	chr19	6152306	6152560	1000909	0	-	Yb8NBC598; RIP_Alu_chr19_006_01	TGGGTCCTATCATCCCCTATC	CCAGAAGGCATCTCATGGTT	SINE	Alu	Yb8	tttaagcatagttgtaaccatacagtgtataaagattttgatacctgctttgtcacctctgacatcaaaaatgcttaaaatgtgctcttcagagccatca<br>tttcaaaatattaccgagaatcccatccagaaggcatctcatggtttaatccacagctgtgggacacttaggttgtccccgactttttgccatcactaat<br>aacacttccaagaagtatctttgtgcataagccaaaatatattcatgttttggttttgtttctttaagtaaaactcccaaaggtagaattacaagctcaa<br>gaagaaatcagtattttatttttacttttgtttttttcacgattacagcctgggcaacatagcaagaaaccatctctacaaaa<font color="green"><u>AAAAAAAAAAAAAAATT<br></u></font><font color="red">GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGCCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC<br>CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAAAATT</u></font>agctgggtgtggtggtgtgtgctcatag<br>tcccagttaccctggaggccgagttgggaggatcgcatgagcccaagacttcaaggctgcccactggctgtgtgagcctcagtttcctcatctgtagata<br>ggggatgataggacccacttcacattgctgtcgtgaggttttacaggatcatacacgtggagcacaatgcttctgcacataatcagaaacctctaaatgc<br>tatctacaattattattttgtctgcaaaaagttcttcagctgaagaaaatcgagaggtctgagactgctagtctaatgggtgttattgcgtatgacctgt<br>gatcagaatgatttgttcgtgcatctatcctgcctgctaactagggcgttcatcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	691	398	NA	intron:ACSBG2:NM:030924:4/15
0	chr19	22835023	22835183	1000910	0	-	Yb8AC774; RIP_Alu_chr19_022_02	TGGCCTGTAAACAAAGATGAGAG	TGGCAGATATTGGTATCTGGAAC	SINE	Alu	Yb8	cggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtggaggcgagagcccgtagtcccagctactcgggaggctgaggcaggagaatgg<br>catgaaccccagaggcggagcttgcagtgagctgaaatcgcgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaga<br>aaagaaaatttggaataaaatctgagtttctgaatctctaacaagctcaccagtaatgcccatgtttttggtccaagaaaactattttgtcaaacatcca<br>gtaagtggaaaagcctgtgtgtttttcagtttttctggcctgtaaacaaagatgagagctttcattttccaaagacagataaatgcaaagaaaa<font color="green"><u>CCTAAG<br></u></font><font color="red">GTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGTCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTG<br>CAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG</font><font color="green"><u>CCTAAG</u></font>aaaggtcagctgccagattaaatgtgattgttt<br>atgcacatctgctgaataaagatactcagtaatgaagagaaaaataattaactctatagaaaaaaatctgtcacagagttcattaatcaagtgagttatt<br>aacatcaagtgcatgaagacaaatgtgctgatgcacacagaaggacacggcatcactgctatgatattgcccagccaaaagtaaattatagtctgaattt<br>aatcataaagaaacactggttttatgtaaagttccagataccaatatctgccatgttctgtaaattttaatagtgattttaagtagtctttctttcacac<br>cctaaagagcaagtatctcctaattattattatttttaaactttctgcgtaataaatgcca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	518	351	NA	intron:ZNF492:NM:020855:1/4
0	chr20	5943001	5943316	1000911	0	-	Yb8NBC93;pAlu20-5890901; RIP_Alu_chr20_005_01	AAGTGAGTCCCAGGGCCTTCT	CACACAGGCACTTGTTTGGT	SINE	Alu	Yb8	ttgatccttctcacttactgttcgtatcctgctatgggtatgcaaggtgctttgcttgcctcccacatgaagcacttattgcttcctctgtgcccatgcc<br>acctctcgctccttcaacaaccctctcattctgtcccacatgcccaatgccaatcctctccttttcaaaaggctttccagagttttctttaatccccagc<br>tttctcatctaggctccttttgcactttctgtagagtgtaatacttattatgccacacaggcacttgtttggtgtttggatctcaagaagcatttataaa<br>ttcagactgtggcagactgtatttgccaaatatgattgcaacaatatttatcttcaagactttttagaaccttgctactcctccatt<font color="green"><u>AAGAAATGAAGGC<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGAAGGC</u></font>taattccttctcctggaatttgagaaggcctgggactcactttgttaccaacagaatgtgacacagtgatg<br>ttgcacgacttctgagactagctcacaaaaggcaaggccatttctgcctaccaactgcacttcttgacctgaacctgtcagcagccatataagcagactg<br>agtgcctgagctgctatactgtgtgcaagaagcccaaactagcccacacagccacatggagaagaagatgcctggccagcccccagccaccttgctgtac<br>tccagccaccatctgactacaactccatgagaggcctggagccagaactagccagttgagtagttcttccaaactcctgatccacagatatcatgagaac<br>taataaaatgattggc	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	601	274	NA	intron:MCM8:NM:182802:7/19
0	chr20	14980988	14981305	1000912	0	+	Yb8NBC435;Yb9NBC53; RIP_Alu_chr20_014_02	TGAATGATTGGGACTGGGTA	TGGCTGGATGAACTTTCACA	SINE	Alu	Yb8	tttaaagatataaaagcaatactgtatattgttcagggctatatatctgtacaaactttaagcaattggctgaagggatgcatactaaattcatcattgc<br>agttactcttggaaagtggaatttgactgggaaccaagaggacttaattttatctgtaatggtttctttcagatgaaaaaataaaaggcttaaagccttg<br>aagggcaaatatcaactgaattcatgatgatgattgggatagaagaatacttttctacattaaattttttttattttcctcagaaagcaaaacaaaacac<br>aaacaaacaaataaaatctattatgaatgattgggactgggtataaatgaggtgtttggaattctggtgatgttctataacttcatc<font color="green"><u>AAGAGGTAGAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGGTAGAAAC</u></font>atggaaatgttcattttgtgaaagttcatccagccatacaaggtaggattggtccactttgttgtatgt<br>gtgttatccttaggtggaaatttctggagcaaatatggcaaaataagaaaatttgacgtagtctgacataaaacttgacatacacagattattctttatg<br>cttttctaaaagcttgtgatattttaataacttcaaaagagatggttcattaataaaaatattttgattttggctgtattttgattgcaaatctgtgtac<br>tgcaaaacaatctcattacttgctttttctgtaccataccatgattttcacttcatcacaccttagcaaaagctgttggggaatgagaagacatgaatgg<br>tctggtaaatgctgttga	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	444	113	NA	intergenic
0	chr20	46019080	46019393	1000913	0	-	Yb8NBC445; RIP_Alu_chr20_045_01	ACCGTGACATGCGATTTACA	CAGGAACTCATCAGCATTGG	SINE	Alu	Yb8	ggatctgaggcaagtcctggaatccaggtgacaggaactcatcagcattggagtaaaagagatattcaaaacagagtgaagagtaagtataaataacagg<br>aggctggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtctggagatcgagaccatcctggctaa<br>catggagaaaccccatctctactaaaaatgaaaaaaagaaattagccgggcgtggtggtgggcgcctgtagtcccatctactcgggaggctgaggcagga<br>gaatggcttgaacctgagaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcaacagagcgagactcgtctc<font color="green"><u>AAAAAAAAAAC<br></u></font><font color="red">AGGAGGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCT<br>AACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAC</u></font>cggaggctatttgtgtaaatgtaaatcgcatgtcacggtgagtaatcaagatagtgctgcccttgggggatgtga<br>ctaaaaggaagcacagagctgcccaattaagtattacatttcccagctttctttgcagctaggcgtggccacatgacaaggccacatgtggatgtggggc<br>agagtggacagggaggttgtgtttgcacaaaagcatctacctgtgatgtttaagttgagatggatgaaaagaaactggccatgtgcagatactggaagag<br>agaatcccacgcaatatgccattggaaaggaatcttagtttgagaaattcaagaggtgccagtggtgggggtggtgtgggcgtggcaggggatagactct<br>tggagaacaaaatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	733	408	NA	intergenic
0	chr20	59974181	59974487	1000914	0	-	Yb8NBC516; RIP_Alu_chr20_059_02	GGGCTCAGGGATACTATGCTC	GCCTAGGCCTACCACTCAGA	SINE	Alu	Yb8	gagcccctgcagggcaggctctgagttcctcccctcaggatctcctgagcccagcatcacacatgtgagcaggaactaaaaaagaggcaggttgaaaaaa<br>cactgaaagggaactggagaggccaagtgcttcgtgggtgatggatgggcaggtggacgtgagtggccaatttgccaagtcctgcagcgaggcccggcac<br>acaccatagaccaaccggataggacctcatgatggaggtgaggctttggggagggcagagggggtgcaaaggctgagccaggcctggggtggtcatagag<br>ggagctgggagatgagccaggggctcagggatactatgctctctacctttgggtacgtttgaaattttccaataaaaaatcttttt<font color="green"><u>AAAAAGTGGGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGTGGGTTTT</u></font>tcctcctgaaacaattgttaaggttctgagtggtaggcctaggctttaaggacttagtataaataatgacctggggttc<br>actttacaaagcatttaacccacatccacatttaacccacatcagcatttaacctacatcagcatcacacctccatggccagaggctgcacaatctgaaa<br>atgtgagagcaacagggcctacaggactgggctgtggccggggtctgactgtgagagtcctgctctgggcacaccagtcacacctgctggcctgagaaag<br>gggacacacaatgactgacgcaaggccaatcttcctccaagacataattgtgtatgtgtcaaaattaacgaatttggctaggccacagtacccagaccta<br>ggtaccc	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	445	124	NA	intron:CDH4:NM:001794:2/16
0	chr20	26061339	26061645	1000915	0	+	Yb8NBC523; RIP_Alu_chr20_026_01	CGAATTGCCAGTGGTTAAAA	ACCTTCTGCACGTCTCCAAC	SINE	Alu	Yb8	gtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccggg<br>aggcggagcttgcagtgagccgagatcacgccactgccctccagcctgggcgacagagcaagactccgtctcaaaaaaaaaaaattattcacatctaatt<br>atctcaggagacatcaacacagcaatgttgaaaatttcccattaattgttaatccatggagaaaaactggacaattattttttaaaatatgaaaagcttc<br>atataatacaaattatactcccacatgtgattcaatttctattaatggcagagaagttaataattacgaattgccagtggttaaaa<font color="green"><u>AAAATAAATCATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGATTCCGTCTCAAAAAAAAAAAA<br>AATAAAT</font><font color="green"><u>AAAATAAATCATTC</u></font>atcgttggagacgtgcagaaggtttaaaagaggtaagaattagtttttgggtttggggcgttttacgctttccaaaagg<br>ttttgctctttttttttgctcatggctttctctctctctctctctttctttctgatttcagtttcttttgatttctcctgcttagaaatggtgagagaac<br>tttggatgtggaacgtggaggaggaggaacacgaagtggggatctccacttggggtggtcagcactgcgggtgcccagcaaagtcactgcctggtccaca<br>tcccggaggggtctctgcgcctcagtcggcatcgcagctgatggtgaaacttttggtgtggcagaagagtgtccacaaacttcggaaggtatccgctaca<br>tcctcca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:FAM182A:NR:026713:3/5
0	chr20	40943733	40943853	1000916	0	+	Yb8AC828; RIP_Alu_chr20_040_01	GACCACCTTGATGGAAAATACA	CATTGCCATTGGTCACATTAGA	SINE	Alu	Yb8	gaaaagatcttatgtaactgaaagactataaaccaagaaggtggttgcattggttttgtaggatgctaagagtgtgaatcaagaacaatggatagaaact<br>tcaataggaaatatttcagtaagtacattaaaaagcctccttagagacacagcccactccctactccagaaaacagtaaagctacctcagagataaatga<br>gttctctgtcattggaggtattcaagaataagcactaatgccagttaattggtgttgtagtatggatagaaccattgttttgtgtgtgtttgagattgtt<br>gaatgacctttgatatgctttccagccctgtgattttctaatattatgactggtgccaatccttgaccaaagaaatatttgacacaaaaa<font color="green"><u>TGGTTACCTT<br></u></font><font color="red">GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGGCTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGGTTACCTT</u></font>gtttttgtttttggagaaacactattttctaatgtgaccaatggcaatgaaaaagggcgtattaatcac<br>taatcaactaaaccatgattagtgcattcctagatagcaaattgatagatattattattatatatgaagaacttaaggatcagagaggtcatgtaatttc<br>ctcaagtaaagcaccatctctttactttaatacaggagtgtgcaaaggttttatgtaaaaagccatataataaatatcttaggctttgtggagcatatag<br>tctctgttacaactgttcaactttactgttaagcatcaaaacagccatagacagtatgtaaatgaacaggcatagctgtactattatttttttaatttaa<br>aggcatgaggtaggatttgcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	691	560	NA	intron:PTPRT:NM:007050:12/31
0	chr21	41586880	41587190	1000917	0	+	Yb8NBC106; RIP_Alu_chr21_040_01	TCACAGCACAATTCACAACTG	CTGGGTTGCATTTCATGGTA	SINE	Alu	Yb8	agctttgaaagaagctgtgagtagcagcctacaccgctgtctttgggaaacaccactgaacatgtaaggattcttatagactacaggtaaagggtggaaa<br>aagagatttccagcaaatggaagccaaaaacaaggagtagcgattctgatatcaaataaaacggacttcaaagcaacaacagcaaaaaaaaaaaaaaaaa<br>caaaacaaaaaacaacaagaaaaagacaaaggtcactatataatgataaaatgaccaattaaacaagaagatgtaacaattgtaaatatatatgcatcaa<br>actccagagttcctaagttcttgaagcaatcagtatatcaaaaagacacctgtacacatgtttatcacagcacaattcacaactgt<font color="green"><u>AAAGATATGGAATC<br></u></font><font color="red">CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCT<br>ACTAAAAGTACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGG<br>AGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGATATGGAATC</u></font>aacctgagtcctcatcaatccatgaatggataaagaaaatgtggttcatacacaacttacccatgtaaaaaacct<br>gtacgtgtaccctctgagcctaaaataacagttggaaaggaaaaaaatcataaaagcaagactcaactaaaaaaaaacaaaaagaaaaaattgtgatata<br>tataccatgaaatgcaacccagccataaaaaaaaatataatgacttttatagcaacttggatgaaactgggggccgttattctaagtgaagtaactcagg<br>aattaaaaaccaggtactcatgctctcacttataagtgggagctaagctataggtatgccaaggcattcagagtggtgtaatggacattggagactcaga<br>agtggggaggg	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	558	233	NA	intron:DSCAM:NM:001389:11/33
0	chr21	37864450	37864758	1000918	0	+	Yb8AC1817; RIP_Alu_chr21_036_01	AACTCACGTCCACCCAGAAC	CGTGGCTGTCTTCCTTCTTC	SINE	Alu	Yb8	gaaggtcatgtgtgaggctgtacagctttcccagtaaatatggtgcatgttgggaggacaggtgcatgtggacaggccgcctctcttcccaagcacccgc<br>tctgggctggggtctcaccactggagtaagaacagtatcatgatgcattaagtgaggagtccttgacgtgggttgaatagtgtccctgcaaaactcacgt<br>ccacccagaacctcagactatgaccttctttggaaatagagtctttatgggtgtgattaagttagtatgtggctgactgcggtggctcacgcctgtaatc<br>ccagcactttgggagcttgaggtgggaggattgcttgaggttggtagttcgagaccagcctgggcaacatggcgaaactctgtctct<font color="green"><u>AAAAAAAATGCAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCCCAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAAAATGCAA</u></font>aaattagctgcagggcatggtggcgagcacctgtaatcccagctacttgggaggctgaggtgggaggatctcttgagc<br>ccgggaggtggaggttgcagtgagcagtgattgtgccactgcactgcagcctaggtgacagagcaagaccctgtctcaaacaaaacaaaacgaaaaaaag<br>gtaaagatgaagttatactggcttccaatggctgctgtccttacaaaaaaaggataggcatggaagaaggaagacagccacgtgacgacagaggcagagg<br>tggggatgatgcgactacaagccagggaaggccaaggagacctggagccaccaggacctgggaccagcaaggaaggggcctcccctagagccttcagagg<br>gtcgtggcc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	791	469	NA	intron:CLDN14:NM:001146078:2/3
0	chr22	43549346	43549655	1000919	0	-	Yb8AC1821; RIP_Alu_chr22_041_01	CAAGCATTGTTTGCACCATC	AAACTGAGGCTTGCCAAAGA	SINE	Alu	Yb8	atccagggggaattggttctgttaagaaagactacttccctttccttcgaggttcgggggttaaacttttttttagtaaaaaataaagaaacagcctggc<br>cgacatggtgaaacccatctctactaaaaatataaaaattagccaggctgaggcaggagaatcacttcaactctggaggcggaggttgcagtgagcccag<br>ctggagccactgcactccagcctgggcaatggagcgagacaccgtctcaaaaaatatatatataaataaaaataagaaattaagaatgacttccctagtg<br>gtctagtggttaaaaaaaaaaataaaaaagactaccgttttaaacagagagcacatccaagcattgtttgcaccatcaaaagt<font color="green"><u>AAAGAAAACACAAATAA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAAAACACAAATAA</u></font>gccaggaacagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggaggatcgcttgagcccag<br>gagttctgcaggagactgcagtgagctatgattgcatcactgcactccagcctgcataccagagtgagaccctgtctcaaacaaacaaacaaaaacaaga<br>aaggaaggaaggaaggggaagaaagaaaaaaagagaaagagaaaggaaagaaggaaggaaggaaagaaagaaagaaagagaaagaagaaagagaaagaag<br>gggtgggaaggggaggggagggagggaggaaggaaggacggaagaaaggaagaaagcaagctaaagtgaaaagtaggctccctccctgcgagcccaagcc<br>cctcacccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	998	671	NA	intergenic
0	chr1	63151829	63152158	1000920	0	-	pAlu1-62509441;Yb8AC1015; RIP_Alu_chr1_062_01	CCAGGGAGTTATGATGACAGG	TCAGCATGATGTTTTCAGAGAT	SINE	Alu	Yb8	tttttctttctttccagcgttctagcactttttttttcctgaaggggcaaaatagcaagtgtttaagagcatgggctctactctcagaccccgacatggg<br>ttcaaatcctgattggtattttctagcttgggactttggccaagttgttgggccaaatttccgtttcctcgtctggcaaatgagaataataataggaccc<br>agctcatagtgttgttgtgaacattaagtggcataatttgtgtaatgtgcgtaggatagtacagggcctatactacctgtcatcaaacacttgtagtaat<br>tagtttctcccagggagttatgatgacaggaaattttttttttttgtaaaataattaggtcttacttctgatgatgatgtcattaaaaaat<font color="green"><u>GTTATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GTTATTACT</u></font>tgacatgtattcctagttttaatttctcttattagaaccagaagtttatctctgaaaacat<br>catgctgataaagtaagtgcactttagagagttggatatgaaattgtatgtctattagtggagttcgccaccagatgggataggacaaaccacaagagaa<br>aaagagaatcagttgtgcaaaacaacacaaaatgcaaataagaacagctttctaagaagttataaaattaagataatgtgaatgaagaaatgtgcactta<br>ttggacagacaggaggtggatatggtagtgattggtgattggacatgcaaggtgaggcggactgaggagtctgggatgacatcctaagttgggcaaccac<br>gtggatgatggtggcagtctttggggtaag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	165	NA	intron:DOCK7:NM:033407:1/49
0	chr2	8616812	8617101	1000921	0	+	Yb8AC1121;pAlu2-8621625; RIP_Alu_chr2_008_01	AACAGCAGGAATGAGGTGATATG	TCATAGGGCACTAAGGAAGTGAG	SINE	Alu	Yb8	ggaaaaaaaaataactatgagaagcaagactcgaaatctaccacaagaaaacaccaacaacaaacggaattaataactctgaacaccaaagaatgtacct<br>gctctttcattcaaccagcttttattaaactattacctaccagacactgtgggagttactgggatgttggggtgtataattctggatctgtgccctggag<br>gagcttgtatgggaaagacagacactaaacaaacagttgcgacaccgtggactagccctgtgccaacagcaggaatgaggtgatatgggagccaattcac<br>ccacttggaggctcaagaacagggggattttgccagatgcagcagggtgatgataggattagacaggatgataatggaagtcc<font color="green"><u>AGAAATGTGAGTTACAG<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGTGA<br>GTTACAG</u></font>ccacaccttaaggcacacctctcacttccttagtgccctatgagaatgcctggcccctacggctgcagagcagtacaaaggttaacgagatgt<br>gggaaaccactcagaatttttatgctaaagtcattacatttgagagcgatttcatattggctggactttggtctcagtcaatatgatttcatctggcacc<br>atttatgttaccaacttaaactggctgctatttccccaaaaaagtatttccctaaaaatcttcacatatatgtctgccttttcatcaattaaggagtatt<br>tactgcacacctccatgtgttcatatcctatttgacatctataaatgaatcttaaaaagtgcaactaagcaagcgtgtatcagtggcatc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	486	179	NA	intergenic
0	chr3	6679969	6679970	1000922	0	-	Yb8NBC406; RIP_Alu_chr3_006_01	CCTTGGGCAAAGCTGTTTTA	TCCTCCCTCAAACATCAGAAA	SINE	Alu	Yb8	gtgcatgcatgaatttatttctgaattctatatcctgttccacgggtccgggtgtctgtttttgtgccacgtaacatgctgtcctgtttactttgtggaa<br>tattttgatgtccagtactgtaatgcctgcagctttggtcattctgcgcaagcctgctttgcctatccagggtcttttgcgtcttcaaataagtaccaag<br>gtcctagaaattttgtaatccacattctcattttctcccttctttccttcggcccttcttctgttttcttccccatttcctccctcaaacatcagaaaaa<br>tgtactggaggatgtttggttagaaaaaaaaaaaaaacaaaatggtgaaagtagttttctgtaaatgaattggttattgttgtttcacctt<font color="green"><u>AAAAATGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGTA</u></font>aaaagtgagaattaaagatgtaaaacagctttgcccaaggaatacagaactactaagcctgggtggtgccatgcc<br>gtgtttcttcctgcctacccactgaatttaatcctccaattcctcaattgtaaaaggatgatctttctgatctcttcaaacgctgatataaccaagtcca<br>gtctgataggtttgtatgattttcatattctcaccacgaaaaagtgtgtcaagtaagttaataaggtaattgaattatgttaatagaactatcaggtctt<br>taatgtgtatgtatgtgaaaacaagtttgaattgaaatgaattcttttaaataaatgagcagatataaaaatacttccttcagtcatttatttattcact<br>tgccatgtatttattg	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	488	153	NA	intergenic
0	chr3	69845647	69845922	1000923	0	-	Yb8AC1171; RIP_Alu_chr3_069_01	CACAAACATGGTCTTGGTGC	TGCTTGAATGCACAGCAGTT	SINE	Alu	Yb8	ttccattcacatgtggcattaaattggcttgaagggagcgaattagaggtataccctctggactaaattatgatacaaatccctgcatactcccattaaa<br>aataatttataaacttagaatagtagatgttctccttgctaatgtatttagcttatgttagagtcagaaaacctgcaataaaagtctcctataaaatggg<br>tacagtttctgcaacctttatcacacaaacatggtcttggtgcttctgctttaaccacttaacccctacacatcacttgttggtggcatttgctcaagta<br>ttttgaaatgtttagtttgttgtcaaggcaatagatatggcctaacaaatcactctgtcccaggttatgtttcatgactatctt<font color="green"><u>AGAAAGACGGTGTTTG<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACCAAAAATACAAAAAATT<br>AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGACGGTGTTTG</u></font>taagcttc<br>acaaactgctgtgcattcaagcagctttaaatgttttactacctgcaaaagtatttaggaaattcctcataggcactaaaagaaaaaaaaatcctttcag<br>attagattcccttttctaaataagaaagaatgctttgccatatttctaaaatgaatacaaactaaacacaatcttcaaaaatagcaacagaggccaggcg<br>cagtggctcatgcctgtaatcccagcactttaggaggccgaggcaggcagatcacctgaggtcaggaattcaagaccagcctggccaacatgaagaaacc<br>ctgtctttactaaaaatacaaaaattagctggtgtggtggcacatgcctgtaatccctactactcgggagtctgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	208	NA	intron:MITF:NM:006722:1/10
0	chr4	190624637	190624932	1000924	0	+	Yb8NBC402; RIP_Alu_chr4_190_04	CATTTCCCACATCACATACCA	GGTCATCCTCACTTCCAGGT	SINE	Alu	Yb8	ttcaagaaaatctcctaaatgttgataaaacagtggaagtctgtgccctctgagccagagctagttcctattccctcctccagctccatgtcacaggaga<br>tctccacatcacatgatcacacgtcacatgaccaggaacatgggaactccttttcagccccactcccagtcaaagacgtatgattacaccccaggtgatc<br>tcatccccagacaccacccctctaagtaaaggaaattaggatgccatctcacatcaaggggacagatgagatgtttcaacaatgttgatgtttggacaac<br>taggaagatatatgaaaaaataaagttagattcatttcccacatcacataccaaaataaattccaaataagacaaaaactttaatgtgaat<font color="green"><u>AAAAATAAA<br></u></font><font color="red">ACTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAC<br>AAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAA</font><font color="green"><u>AAAA<br>ATAAA</u></font>taaataaataaaataaaataaaataaaataaaataaaataaaaccatacaaaaacataaaataacattaaagaatttctttaaaacctggaagtg<br>aggatgacctttttatttctgaaaatccagaatccataaagtattaacattttatcacatacaaattaaaaatttctacatggcaaaaaataaggtattt<br>ggatctaaagacatataacaaattggagggcagacatttgtaatcatatcacagataacgggtgaatctctctgtataggaacttttagaaatgaagaag<br>gaaaagataaacaacagaaaaggattcaaagattaatagttctcagaaaaattcaaataattttttgatagatgtcaacctcagttataaaacgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	477	172	NA	intergenic
0	chr5	157453033	157453034	1000925	0	-	Yb8NBC294; RIP_Alu_chr5_157_01	CCGAGATTTTTCCCACCATA	CCAAAGAAGGGCTTGAATGA	SINE	Alu	Yb8	agtagcactgggcctatgcccagatctgttgctttaggacaataaatcatttctattttcaccccctccccacctccatccccatttatagaaaacagcc<br>ttgtgacctgactggtaactttagggccagccattggcaaaactgggaggcccaagataaggagccttcctctacctgtgaacagacccctcttcctgcc<br>cagaataaggcacacacatctttatactgccctgagccttctgccgtaattacccaacccatctcactctccaggacagcacccaaagtaccgagatttt<br>tcccaccataatgcccctatcttgagtgttatttttcaacaaggctctgtttcctgctaaagagtaaatggttaatctaattttaa<font color="green"><u>AAATAAATAAATAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>TAAATAAATAAAT</font><font color="green"><u>AAATAAATAAATAC</u></font>cagcactcaagtgtcaataaaatgccaactataatgacgtgagaggaagacttattttctactgttttattta<br>aaaaaaaaaaaaaaaaaccctccaaaccctctcttcattcaagcccttctttggttgaattagggtgggtagctgagactctcttgttcacctctccacc<br>ctcaatgcctagaacagaccctggcacacagtaggctcccaggactatctgtgaatgagtaagagcccaccccactttccatttcctcccccacctgaca<br>gatcctgagcgggaccttgaaagaagagcttgcagccaatgaagttgattcatcaacagattcatcaattgatgaaatagattaccctagaatcttgatg<br>ccaaagtccactt	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	564	237	NA	intergenic
0	chr5	29439399	29439681	1000926	0	-	Yb8NBC509; RIP_Alu_chr5_029_01	CCTCCTGAAGGTCCCACATA	GAACCTGGGGCAGAATGTTC	SINE	Alu	Yb8	gtgtttagtaaacaaaatatagttcaatgtgactgaagcatactaagaggcagaagaatgtggtgtacactgtagtgtagaggagtgtcttagtttgggc<br>tgctatacaaaataccatagattgagtggcttatagatgacaaaaaaaagtatttcttactgttctaggggttggaagtccaaagtcagagtgccaggat<br>gttctggttttggggagggcccttttgcaggttgcagactgttaggtttttgtataagcacatggggaaagaagtgagagctctcttaggtcccttttgt<br>aagaacactaagcctattcatgaggcctctactatcacaacctaattacctcctgaaggtcccacatactaataccattacactgacagtt<font color="green"><u>AAGATTTAA<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCGGGCGCCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCGGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTAA</u></font>atatagaa<br>attttgagggtacactttaaaaattcagtccataacattctgccccaggttccccaaaattcatgtcttcacatgcaaaatgcagtcattccattccaac<br>aaatccataagtcttaactcattccagcctcaagtccagtctaaagtccaaggtcttatttaagtattaactaaatcagatgtaggtgagattcaaggta<br>cagttcattctcacaaaatttctcttcatctgtgaacctgtggaatcaaacaatatgaacattcaaaatacaatggtgagacaggcataggataaacatt<br>cccattccaaaaggaaccgctattcaaaaaaaataaaataaatgaatgctgtgtcccaagtaaatctaaaacctaacagggca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	404	112	NA	intergenic
0	chr5	29458980	29459295	1000927	0	-	Yb8NBC510; RIP_Alu_chr5_029_02	GAAAGGCAACAGGAAGTCTG	TACTGCCTTTGCTTTGTTTGC	SINE	Alu	Yb8	gaataataatgcaccataaacacattggacttagttcataaagggaagagccctttgaaattcagaacattatcaatgtaattgtatgatgatgatttag<br>tcaggaaaaaaaatatatgtgatcagaaaattaaaaaccaataaaagcattatatacatttatttctcatttctattaaaaaattcacatttacagaaga<br>gaatttcaatatcctggaaataatatttgtaaaatccagcttaaaaaaattatactaacataaaaaaatttaaaaagcagctttttctctgaacaaagaa<br>aggcaacaggaagtctgtttctattatctctactagacttaattttagaacttatggacagtagaataaggcaaaaattgaatgtaaaaaat<font color="green"><u>AAAAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAATTAAAAAA</font><font color="green"><u>AAAAATAT</u></font>tatttattcatataatttataataaaatttatgtaatctatatatcattttaattacaaaatatgcttatcaaata<br>tttccatataagtctgaggtgcaaaaaatcaattgaatgtgtatataccataaacaattagagaaaaatggtattagcagtacattgaggaaaactaagc<br>atatgaatattagatgtaaacatattctgcactaaagactataaagcttattgctatacatttgaaaagatctaaataaatcaaggacagtattatgtcc<br>ctgaaatcaatgattcaatattgttaagtattaaatgtgctaagattgttctaaacattcagtacaatcagaaataaaatgactgttgggttatttttgt<br>ggatattgtaaaatat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	857	533	NA	intergenic
0	chr5	69313837	69313838	1000928	0	+	Yb8NBC543;pAlu5-69091653; RIP_Alu_chr5_069_01	TCCCTGCTTTCGGAATTATG	GGCTGTGAAACTTGAGGGTCT	SINE	Alu	Yb8	tcaatgcctgttacacatatcattttgttattttgcggcttttctggtttttttcattatccttcatctgtctattttcagttgcaaaggaaatgtttgt<br>gttgtatatgtgttgtgtacatgcatgttttgagattgagagaaaaagagacagacagacacacagggacagaaagagagaaaacaggagctcatactga<br>ttttgtattcattagaaggcaagccccatgaaggtggtagacgtcctgctttcctcgctgctgttatttttgtattatcttgatgcttttggcactcacc<br>atatatttgttggctgtgtcgtgaaatgacattccctgctttcggaattatgaggaggagatgagttacttataaaagcactt<font color="green"><u>AGAATTCTGCTCACATG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAATTCTGCTCACATG</u></font>aactatacaatttttttttttttttttttttttttagatggagtctcgctctgtcacccaggctgaagtgcagtggcat<br>gatcttggctcactgtaacctccacctcctgggttcaagcaaatctcctgcctcagcctccagagtagctgggattacaggcgtccaccaccacgcctgg<br>ctaatttttgtatttcagtagagatggagtttcaccttgttggccaggctggtctccaactcctgacctcaagtgatccgcccacctctgcctcccaaag<br>tgctgggattacaggcgtgagccactgcacccaacctacaagctccttaaattgtatttttattatgaagaccctcaagtttcacagccacttgaggttt<br>gatc	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	757	436	NA	intergenic
0	chr6	135792869	135793185	1000929	0	+	Yb8NBC292; RIP_Alu_chr6_135_01	TCCTTTGTGGAATTCAGCAGT	AGGGAAGGCATTGACTGTGT	SINE	Alu	Yb8	aatgaatgaagtttccagagtatcttcagtagcatctctacctttcatagcattacactgacattttcattactttttaaatagcctgattttgtggttt<br>tgatttcctttttccctctaacagctttatgggataaattcccaagtagtttgtaaattataaacttttgttaacttctagttgtactgtactatttttt<br>ttaaaaaagtctcctttgtggaattcagcagtttcatggatcaaattatgtttgaattttgaaacgtcccaaatacatttgttcattcatgttcctatta<br>tacctttgccaattttttacctctttaaatgattcaggtttttttttgctttggtttatctgctattaaaatcagctttatt<font color="green"><u>AAGATATAGCTTACATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATAGCTTACATCA</u></font>ataaaatttgccaattttaattgtataattaaatgaattttggcaaatgtatgcagtcatgtgac<br>caccaccataatcatgacattgaacatttccatcattctacatgtcctgttacacagtcaatgccttccctccatgctctgaccctactcaaccactgat<br>ctggtatcacaatagctttgccttgtctagactttcacataaatgaaattataccatctatagccttttgtgtctggtttccttcattcagcacaaagct<br>tttaggattcatccatgttgctttattcatagcagtttattccttttttgtggagtagtattccattgtacagttatatgccacattttgtttctccata<br>caccaattaatagatgt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	660	325	NA	intron:AHI1:NM:001134831:5/29
0	chr6	51806039	51806352	1000930	0	-	Yb8NBC447; RIP_Alu_chr6_051_03	GCAGACGCTCTGGGTAACTC	AGGACAGGTAAAATGGTGGAA	SINE	Alu	Yb8	tgagaattacgccatgataggtaacagatgaggaagaaatttgggcttgactgaagtaatgggggctgtctgtgaaggcttgcggcagtacagcccaggt<br>aatttgctgagcctgatgggtgtcagggtcagtccaagtgaaagcgaagagaggctgggatgaagggtgcaaaggaatagtaaagaaagcatgtttgaga<br>tccagaacagaataatgggttgtggagggaggtattgaggataggagagtatatgggtttggcaccacggggtggataggcaaaacaatttggttgataa<br>ggcacagatcctgaactaacctgtaagccttgtctggttttaggacaggtaaaatggtggaattgtaaagagagtttataggcttt<font color="green"><u>AAAAGGCCATGCTG<br></u></font><font color="red">GGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGCCATGCTG</u></font>taacaggtgagtgataacaggctttaatccttttaaagcgtgctgtgggatgggatattggcattgagtggg<br>gtaagggtgattaggttttaatgggatggtaaagggtgcatgatcagtcgccaaggagggagtagaggtgtcttatatttgtgggttaaggtgggggggg<br>atacaagaggaggatgcgaaggaggctttgaactggggtaaagggcagcagtgaggtgtggctgtaatctaggaacagtgagggaagcagataattcaat<br>taaaatgtctcggcctaataagggaactgggcaggtggggataactaaaaaggagtgcataaaagaatgttgtctaagatggcaccagagttggggagtt<br>ttaagaggtttaga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	918	590	NA	intron:PKHD1:NM:138694:36/67
0	chr6	45967476	45967785	1000931	0	-	Yb8NBC474;pAlu6-45968765; RIP_Alu_chr6_046_01	GCAAAACACAAGTTTGAACTGC	CTGATGGGAAGCCTTACTGA	SINE	Alu	Yb8	gggttcagatgaacaggtggtaacaactaaaaatggtgaccctgaagtcacaaatcagatggatactcccctcacggtgggtgtctccttcaaaggagca<br>tgtgcaccatcatcttattattacacagacatacacagtatgtgtgtgttttacatatatacagttaacctccaaacaacgtggaggttaggggcactga<br>cccctccatacaagttgaaaatccatgtgtaacttttgacttcctaaaatcttaactactaatagcctactactgatgggaagccttactgataacataa<br>cagtcaacacacattttgtaggctatatgcattatatatggtattattacaatacagtaaggagataacagaaaatgttattt<font color="green"><u>AAAAAACCACAAGGAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCTGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAACCACAAGGAAG</u></font>agaaaatagatttactattcattaagtgggagtgggtcatcataagtcttcatcctcctcatcttcacattga<br>gtaggctgaggaggaagaggaggaggaagaggaggggttggccttattctctcgggagtgacagaggtggaagacccacttatacttatccatgtataag<br>tggatctgtgcagttcaaacttgtgttttgcaagggtcaactgtatacacacacataatatacaggatacacatataaattttatgtgtatatataatat<br>gtatacatacacttttctcctgagatttgaggtccaaaactgaaatacccacatccacatagtatttggcacacaccatatacccagcaaatgatattcc<br>tgtgtaaatc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	659	332	NA	intergenic
0	chr8	123235261	123235262	1000932	0	-	Yb8NBC639; RIP_Alu_chr8_123_01	GTATGGAGGGGGCTTCTTTC	AAGTGGCACAGCCTTATTGC	SINE	Alu	Yb8	ttttccgtgtgttctgactgctccactcactggccattcacccttctctcttctctctttgggcctccctatttcctgagacacacagctatattgaaat<br>tatgccaaattaacaaccttacaattaataacctctaagtgttcaagcaaagaaaagagtcatgggtctctctagatcaaaacctagaaataattaagct<br>tagtgagggcatattgaaagcccaaatcagccaaaaactaggtctcttgcaccaaatatttaaattgaaaatacagaggaaaagttcctgaagaacattt<br>aaagtgctactcccattaacatatgaatgataagaaagtggcacagccttattgctgatatgcacaaagtttgtgtggtctggat<font color="green"><u>AGAAGATCAAACCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGATCAAACCAG</u></font>ccacaacatccctcgagctaaagcctaatccagagcaaggccctaactctctttaattctgtga<br>aggctgagagaggtgaagaagctgcagaaaaaaagtttgtaagctagcagaggttgatttatgaggtttaaggaaagaagccccctccatacatgaaagt<br>gcaagtgaagtagcaaatgctgatgaagaagctgcagcaagttatccacatgatccaggtaagatagctgatgaacatgtctacattaagcaacagattt<br>tcaatgtagatgaaacagccttctattaaaaaaagatgccatctagcactttcagagctagagtgaagttgatgcctggcttttaagtttcaaaggacag<br>gctgaacctcttattaggtgc	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	557	221	NA	intergenic
0	chr8	140593334	140593335	1000933	0	-	Yb8AC742; RIP_Alu_chr8_140_02	GCCTTCAGTATCAATCATAGAGGTG	GGTTTCACTGGGATAACTTCCTT	SINE	Alu	Yb8	ttctaatttaatttcccatttgagaaagaattcttttatggaacaatcaggcttgaatgattccacgggcttagaaaacaagagattaaaagcttttagg<br>ctcagtataaaagaaggaaaaaaacaagaatgtttgtcttaagactccgttgaggctattgccttagtggaaaacgagagttggctagtctggttctcct<br>taagtcttgtaataaagtgactatgaaaatatcaaatgtcacaagtttaaacaagttagaaagtgataatatataatatcatgtaagtggaaaatttaag<br>gtttcactgggataacttccttatcagagtttgctaactggattagggtaaacatttgtttttgtagtcaagtgctagcaagcttt<font color="green"><u>AAAAATTTAACCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTAACCAT</u></font>tattacatgtttcacctctatgattgatactgaaggcttttttttccttctgaagtttctcttc<br>tcatggtatttgctattttaaccctgtttcaagcaaataaaatttaaacaattaagaatttcaggcatattctattataaactatttaaaagtttaaacg<br>catgtactaaacatgaaataacttcctctggctgtgtatttaagaatatttgtgaatttcttttcagtagaagctcaagtttataggcgtcattacttgg<br>ctagttattcgggttaaacataatatgcctttcctgtgatattatgttagtagtacaagtgctgttgtattataacatttgacttttggggatcataata<br>cagtaaatagtaaatggacata	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	638	302	NA	intergenic
0	chr9	200132	200443	1000934	0	+	Yb8NBC434; RIP_Alu_chr9_000_01	GAATCCTCTTTGCCCTATCAAA	AGGCACTGTGCTAGGCTGTAG	SINE	Alu	Yb8	cagggtttgaatccaagtcagccttactcccaaccactttccacttcattatgttgtcttattgctgacttcctgccaggacttcccaagtgttcatttt<br>cacgtctgcagctcatttaattacttttagttcctttttccttttccaatccagtcatctatactatttaccctatgtcagtgaatgacatccagttggt<br>tcagtatttcaaaatttctggcccaccttctcttctcatctgtatctggttacctttttatccaccttatatatcatttcctaggaaagattccatgacc<br>tcccaaggattgactttgtacttttcatgtgcttttacagcacaaacagaatcctctttgccctatcaaagtagtaattaccaggtat<font color="green"><u>AGAAATTATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAATTATCTG</u></font>tttgcttatttactccccaactacactaggctcctaaggactgtggcaatattcatcttatttatgagtcatatct<br>acagcctagcacagtgcctggcacatagcaggtgctcactacatattttgttgaatgaatgcataaatgaatgaggttacacacatacctctatgacata<br>gtttggatattagttccctccaaatatcatgttgaaatttcatccctaatgtgggaggtgaggcctagttggaggtgtttgggtcaggggggcagatccc<br>tcatgagttgcttggtgtcattaggttaggattgagtgaattcgcgctcttagttcctgtgggatctggctgcctaaaagagcatggcactcctcccctc<br>tctcttgctccc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	57	471	147	NA	intergenic
0	chr11	31152448	31152747	1000935	0	+	Yb8NBC296; RIP_Alu_chr11_031_01	CGAGAGAAACTTGTCACTGGA	GCAGAGACAATACAGGGAGGT	SINE	Alu	Yb8	ctcagactgagaaagacatactggtgagagccacaaacaaccagtagccaacatgtaaagtgagcaaaaaatgaatacttgttttaagtcactcagctat<br>tgggctccttgacttatacagcacaatctaccaaaagctgataaacacattgcattctactaaatccctacaatcctatataacttatatagtaggttac<br>taagagtcagcctttaactgtaaattcaaatgagagtctagaaatttctatcatctattcataaggaagaccctcatgccagtgaaatttggacaaaact<br>ttggatatcatgggaatggaaggcagagacaatacagggaggtcaggaggaatcctaagggaaacagaaaaaagaaaatgagat<font color="green"><u>AAAGAAAACAAAATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AAAGAAAACAAAATTA</u></font>atgaaaagaaaaagaaaagaaaaggaaggaagaaattaaagggagaaggtgattgggggaaatgagaagggaagaaagagaaag<br>aagatgtgaaaaagaaaagaatggtgtttataggctataaaatccagtgacaagtttctctcgttatcctccttttcttactttttggaatgaatttcca<br>tgctttccatagtactgttaattctacaagaaagttgtaatatttaaaatatggaaataataaatgatccagtattagtctatgctttcagcctcatttt<br>caccaccagatcatactaccctccagcagtattatccttaaaaaacaatggataatagtgtataacatccttgaagctaaagaccaatacaggacaggtg<br>	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	541	225	NA	intergenic
0	chr13	23557674	23557984	1000936	0	-	Yb8NBC592; RIP_Alu_chr13_022_03	GCCATGGGGTAGGTTAGTGA	GAAATTGCTGACGCACACAC	SINE	Alu	Yb8	gcagatgttcatagctctgggaatggaatgcgacccttgtggagagcctataaacggacgcatggggggtgcttgcccatacagataagttagggctata<br>aatgccctcatcttgccacggctcttctaggtctctttagggttaaggcatactcccttctgagaatttctggtctaacaggctgtctagcctcacatcc<br>tgtttctatggattgtgtgtaaccagcttttgctgcaactgttactgctgattaatatcttgctaatcatagtttatggataggctgtgtttatgtttta<br>aggctctgttagaaattgctgacgcacacactatattgtaaattcttatcactgtatactgtacttctgcataccgatgttatgtt<font color="green"><u>AAAGAATTACTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGAATTACTTCA</u></font>tccccatgtgatcatttcatctcataatcaaatgaccctaaatccctcactaacctaccccatggcgacaactgg<br>tcctgggttccctgctgctggtgggggagggcaggatcaggggttgccactgatactgactactgccatttccaggtggcagctgtggctgagcccacgg<br>cagtggctggcagggttacttccagagggccggagggtcgccaagtgtaccgctctcccatgctagggtccaatttctcttggccctggcccagagcaca<br>ggtttgcaggggcactgtgcagccgcagggttgtgactgctcgcctcctgccctcccgcacctgcgggctgaccgtggcagtgtctggtcctgggttcca<br>tgctatggggg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	480	155	NA	intergenic
0	chr13	19178189	19178464	1000937	0	+	Yb8AC1667; RIP_Alu_chr13_018_01	TGTGGGACACCAACAAAAGA	GGGCACTTTGACCATCCTAA	SINE	Alu	Yb8	tgtcagcaactgaacttaaagacatacagatgaacgatctggcaggcaaagaattcaaaatggctgttttaagaagagcctgaacactgagaaagcagag<br>acacaattcagaaatgtaccagagaaattcaacaaagaaatcaaaataatgggaaaaatcacatgtaaatcctggagcagcaaagttcaatggacacttt<br>gaaaatccaatggaaggcatcaacagaagaactgatcaagcagaagaaagaaacagtgagctcaaagacaggctctttgaaaatacatggtcagagtaga<br>atgaaaagaaacaaagaaagtttatgagatttgtgggacaccaacaaaagagcaaatctacatatcattggtgttaaaggggaact<font color="green"><u>AAGAATGCAAAAGA<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAG<br>ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGCAAAAGA</u></font>gatagtttat<br>tcaaagaaataacagaaaactttttaaatctggagaaagattaaaatgtttaggatggtcaaagtgcccaatcatatttaatctgaataagacaaccaaa<br>gacatattataattaaactctcaaaggtcaaagacaaagagaagaccctgaaaggactaagaaaaaggaaacaacacataagagaattccaatatgcctg<br>gcagcagacttgtcagcagaaacactacaggccaggagagagtaggataatagattcaagtgctgaattaaaaaaactgtcaaccatgaataaactatcc<br>agcatagctatcatttagaaataaaggagagattgaaacattctcagacaaacaaaaagcaaaggaattcactgta	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	438	148	NA	intergenic
0	chr14	101165914	101166223	1000938	0	+	Yb8NBC291; RIP_Alu_chr14_100_01	AGAAGCAGAGAGTGGGCTTG	TGGCCATACCATTGAGGTTT	SINE	Alu	Yb8	tctggttggccgttagtcagaagtgggacaaaaataggaagctgtcagttaggagtcaagtcctggccatttggggccaattgtcacagaagccacggtt<br>tagcttcctgcattgtcactagagatggctatcgggcctcctgcaagcctggctcactgcaggctggcttcctccactgtttatgggggatgtggggtca<br>gtttcctggcaggttgttgcaggtgtgggtcagcgttctgttttcagaacagacccctgtgggaggggcactgagcttcctggtggccagtgggaagagg<br>gggtcatggcagagtgagatagaagcagagagtgggcttggggtctgtctgggagcaggcaagagcactgttgggtaagaactactt<font color="green"><u>GAAAAGGGACAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTACCAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAAAGGGACAGC</u></font>aaacctcaatggtatggccactgtccctttggatatttagtcccttgcaggtgtcctttgacacacagagacgagac<br>gcaggttgtgtggagacagaggcaggggttggaaggaggctgccacaagccaacgaatacctggaggaccagaagctgcaagaggcctgagaggaccctc<br>ccctagagcctctggagagagcacggccctgcccacacctgagctgtggacttgtggcctccggaacaatgaaagaataaatttctgttgtttttagcca<br>ccaagatgtggaaatttgtaatggcagctgacagaagtttgcccaaggtgacaccattggtggatggaaggactaggattggagcccaggcaaggttctg<br>gtagggagtg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	423	100	NA	intergenic
0	chr14	57031228	57031566	1000939	0	+	pAlu14-55021168;Yb8NBC467; RIP_Alu_chr14_056_01	TATTTTCCCTCCTCGGTGCT	GATTCCACGGGGAAACGA	SINE	Alu	Yb8	tcttgtcaatagattccacggggaaacgaaaatggagtgaagaaaaagtgctaaggggccggagctggtggctcacgcctgtaatcccagcattttagga<br>ggctgaggagggtggatcacctgaggtcaggagttcgagacccccctggccaacatggtgaaaccctgcccctactaaaaatacaaaatttagccaggca<br>tggtagtgggcacctgtaatctcagctactcgggaggctaaggcaggagaatcacttgaacccaggaggcagaggttgcagtaagccaagatggtaccac<br>tgccctccagtctgggtgacagaagaagactgtctcaaaaaaaaaaaaaaaaaaaaaaaggaaagaaaaaaaaaagaaaagaaaag<font color="green"><u>AAAAGAAAAGAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG<br>AGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAAGAGAA</u></font>aagcaccgaggagggaaaataatgaatctaaaattctatacccagct<br>aaatcattcaaaatcaaaaatcaagataaagaagaaacaagttcagatatacagagattcagaaactactaaaagatatctttcagaaaaaaaggaaaat<br>gagctcataaggaagtggcagatataaaaaaaagttagtaaatcagaaaattgcctggaaaagcaagcatctgtatttaaatatgaatattatactgtgt<br>ttaattttgttttccttcatttccattagcactaccctggatgggaccaaagtcagctctcacctagattactgggatggttatttctaatcactttccc<br>cacctctattgttacccacctcttcttctccactctata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	765	411	NA	intergenic
0	chr14	78828246	78828584	1000940	0	+	pAlu14-76818186;Yb8AC840; RIP_Alu_chr14_077_01	GGCTCCCTTTATTTGTCAAGCTA	CTGAAAGAAGTTATGAGCAAGCAG	SINE	Alu	Yb8	tctctcctgtagttaatttctctagatctcttgtgctatattgattttgtaaatagctattgtcacatctgccccttctgcctgtgggaactagtgggtc<br>ttaaaaaattgaattgggtgagagtgtagattaatcaataccaagatttattgactcgggacatttatattaactgttgtgaagtcaagaataatttgaa<br>ccttttcaatacttcattaagtggcatagtgtattatctatggtgtattttgaaagtatccttcctggatttggtacagctctcacctcgacttcctaaa<br>acggctccctttatttgtcaagctattaggatttatattataataggaatcacatcaaggtacttttcaaaggctaagtaaaaatcat<font color="green"><u>AAGAAGAAACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAAACTA</u></font>tagtttctgcttgctcataacttctttcagattcctccttttgaaacac<br>atttttttttttcaactggggttaggttttcagtgagatcaaattcaggcatgggaactagagatacgcatatcttaaaattttgttctttgtggaatat<br>ttgcctattgcactttaaaaagtcaacaactactttgtttaattaaataattaatgcctctcctttttacaagaaggagttacatcatctttttccaaag<br>ggcataaattagaacacttcagacacaacctgttcttaacagggatgtttttcatatctattaagaaggaaataattttgagttgtatagtcatggtgag<br>aaagatatatcaataattattaacttatcctatctcttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	479	128	NA	intergenic
0	chr16	29565350	29565648	1000941	0	+	Yb8NBC430; RIP_Alu_chr16_029_01	TGGATCTTCCATTGTCCACTT	TCAGAAACCTTCGCTCACG	SINE	Alu	Yb8	atgacacttgaaacaagctgaaatgtgcaaatgagccacgctagtcattcacttaaatccaaaaaaatgggaaacaaaaccatttctcatttatgacaat<br>tctccaaattaaccctatatttccttttttaaaaaaataaccagaaaaacaataaaatgtgacaaataacttggatcttccattgtccacttcagggtat<br>tgccactgcaatatattcttaccatatactttcctaccagtacaaactacaaataacttgggtaagtcctgtctgtacttactctacccacctactagta<br>atttcctctgaaaatatatatttagctaacaagtcacgttcatttacaataaaacatttctctgaattagttttcttgcattatt<font color="green"><u>AAAGAAATGGTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A<br>AAGAAATGGTATTG</u></font>atagatggtcactgggggaccactgctcctccccgacagtatttaaataactggtataggctgcaagacttaccagatacctgctg<br>cgtgagcgaaggtttctgagtatgatctctatgccatccaactaatatatcaactgtatccttgatggaaacaaagagagagggggccaatcattttaag<br>atattactgccattcacctgtggaccatttcacagcaaaagatcctaaaaggagcatctatgttctacctacttgacattctagaaacttagaaagggga<br>gaggggcaggaaaataaaagaactacatttctgacaacaatgaaatagtttattttcttcaaatattttaaggtacgaacgtcagaaagaaaaatgcgg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	648	334	NA	intron:LOC440354:NR:002473:7/27
0	chr19	53323364	53323669	1000942	0	-	Yb8NBC548; RIP_Alu_chr19_058_02	GATTGGGGAGAAGGACCAAC	AGCTCTTGACCTTGAAAACAGG	SINE	Alu	Yb8	atttgccaagagacagcaaaagtgataaaagataagaaagcaggaggagaaaagcaactggagaaatgtagagaaaagctagatgtacagagagatgaag<br>gacagacagcaaggtagggagaggggcagaaatgtggaggctcatcagagtgagggagaggaggagggatgtggagccgggtcagacagagcagagtggt<br>gctggtggcaaggagaacagagggagaagcacagcggggaggacacctggggatctggggtgccagactgggtccagggggttataacagagaagagaga<br>atttaacagggagagcagagaggggagaagaggtggaaatctatggagattgaggacgatctaaagattggggagaaggaccaac<font color="green"><u>AAGAGGTTAAATAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGGTTAAATAAG</u></font>ttgcaaggatggagcccagctaatttttgtatttctagtagagatagggtttcaccatgttggccaggttggtctcaaa<br>ctcctgacctcaggtaatccacccacctccacctcccaaagtgctggaattacaggtgtgaaccacctcagctgtccacccatgtattcttgattgaaat<br>aatttgcttatgtcttagttctacagttgaccctgttttcaaggtcaagagctgtgtgtttacactgctgcattttataaatgttagtgtgattttcttg<br>taaggaagaattcaatgttgggagtcaatttcatcagaacctttcaaaagaattttctttaacccaggcatgtgaaagatgcttctctaattttaaggat<br>gggatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	588	267	NA	intron:ZNF28:NM:006969:1/5
0	chr20	20275291	20275614	1000943	0	+	Yb8NBC283; RIP_Alu_chr20_020_01	TGCGGACAAAACTTACAGAGG	TGTGGCCTTAAATGTCATCCT	SINE	Alu	Yb8	tgcagcaagagttctgggcttcactgggttatcctgttctgtcagcgactgtgaataggagtggcctgcactacaagggtaatttgtgtctgagaaaccc<br>ctgtttgagtgaattgtatttaacatgaatacaacatattttgatgcactctcagttcccagatggacccctccagtgatgctaatgtggtgccaaatct<br>ccttcaaatggacactgctccttccaaagttaagatcagccatcagtgcaacctcctcatcgctttctctagtgtagctgcttctggactctaagccctc<br>atttctgtaaggccctgtatgccaggattatgcggacaaaacttacagaggaggccaaaatatgataatgcagtctttacgtttaaa<font color="green"><u>AATAATACCAAAA<br></u></font><font color="red">GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAATAAT<br>AATAATAATAATAATAATAATAAT</font><font color="green"><u>AATAATACCAAAA</u></font>aatgcaacaagtccataacaaaaaaaatcactaaaagtgatgctgatgacagactctcaagga<br>acaggatgacatttaaggccacaaaacgctcagactctcactgctctcagcctgcagcctgcagggctcctcaaggacttgacaagtcaccaccaactaa<br>gtgactgtgaccctcgtcttgaggtgcacagcctcggccacgtacatggaatccaagtcagccctcctaaacacaaagaagtccttgtaagctgaaggtg<br>ggggatttagtgagactcttggcaaagtcaagatttgttaaccacatgggtggatctcaaggtgtgcccccttgacacctgggctccctttcttaatcac<br>ttccaacaatgaaacctaaaagga	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	493	156	NA	intron:C20orf26:NM:015585:24/27
0	chr21	42084203	42084420	1000944	0	+	Yb8NBC280; RIP_Alu_chr21_041_02	TTTTGGGAACCCATTGAATC	CAGCTTGCTAGGCATTAGGC	SINE	Alu	Yb8	aggaggccttctgcatgcaactcttcctctgagcatctcccttcaggtaactcaacaggagacatcaaatgaggctctgctagttaccctctacaaccat<br>gtctttctgaaatgtttttctattttaaataaagtaatcagaaagtgccaactaacatcccatgtaagctccccaatagagcatgagcaataaataaaat<br>acaccaagatggaagaaagtactaaatctggattatcactggattaaaacatttttacaagcaataattattacattgaataaggcaatgacacaactaa<br>gactctcaggctgttatgtttttgggaacccattgaatctggacagtgacagtgtgtagtttgttttatgaaaacatactcatgt<font color="green"><u>AAGAATCTAACATTT<br></u></font><font color="red">CAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTAACATTT</u></font>atctattatataaacattttgatttttagttaaacttcacatattcaatgggctcatagccctaagc<br>ctaatgcctagcaagctgtgtgtgtttcgtaaatgctagttggtgcattcactgtccccatattttttcattttcccatctcataattcatgtggtatgt<br>caaacttctgttgataatataatgtaaccttttgaagtatttttggaatttctattttacaaaattacaactcttttaagtagattggaattacctctca<br>cagtttaggaactgactgtatagaagttgagacagagagagagagagagagagagagaaggtggggggtacaggcgaaagcctttagcgaggtcctgata<br>tagagagatgcttacaaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	399	166	NA	intron:DSCAM:NM:001389:1/33
0	chr4	58091513	58091780	1000945	0	+	Yb8NBC96; RIP_Alu_chr4_057_02	GAACCCAAATAGCCAAAGCA	TGTCCTTCCCCCAGTTTATG	SINE	Alu	Yb8	aagatgtgctttgttaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaa<br>ggccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatctgctgacattccctccactattgtcctgtgaccctgccaaatctcc<br>ctctgcgagaaacacccaagaatgatcaataaaaaaataaattaaaaaaaaatctttaatccatcttgagttcatttttttatatggtgagtgataggga<br>tccagtttcattcttctagatgtggcttgccaattttttagcactgattattgagtagggtgtccttcccccagtttatgtttgtgtatgcttt<font color="green"><u>GTCAAA<br></u></font><font color="red">GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGC<br>CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GTCAAA</u></font>tggttgtaagtatttggctttatctt<br>ggggttcttttttctgtatcactggtctatgtatacacttttataccagtaccttactgttttggttactattgccttgtagtataatttgaagtcaggc<br>aatgcgatggctccagatttatttttcaagcttaggattgctttggctatttgggttcttttttggtttcatattaattttaggatgttttttctaagtc<br>tgtgaaaaatgatattggcattttaataggaactacactgaatctacagattgttttgggcagtgtggtaattttcacaatattgattcttccaatctat<br>cagcaatgagatgtatttccatttgttcgtatcaactatgatttctttcagcagtgttttgtagttct	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	498	224	NA	intergenic
0	chr22	51244032	51244166	1000946	0	+	Yb8NBC126; RIP_Alu_chr22_049_01	AAAATGTCCCCTTTGTCCTTC	CCTACGCAGAAACACCCTAGA	SINE	Alu	Yb8	aggcacacagcttttcctctatagtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaa<br>gttttcatctacatgcatatcatttcttatggtttccaattaatcattccctcactatttttgggaaagacacaggatagtgggctctgttagagtagat<br>agctagctagacatgaacaggagggggagctcctggaaaagggaaagtctgtgaaggctcacctggagggaccaccaaaaatgcacatattagtagcatc<br>tctagtgctggagtggatgggcacttgtcaattgtggttaggagggagaagaggtacctacgcagaaacaccctagaacttctcttaagg<font color="green"><u>TGCCCCAATC<br></u></font><font color="red">GGATGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTCTTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCATTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAGA</font><font color="green"><u>TGCCCCAATC</u></font>atcattcactctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggacaaaggggacatttttaagag<br>aaacctggcaccataagtacagattagggcagagaaagacattcaaaagaggcagctgcagtagatacaaacgtgaccgctgtcagcctgcctggtatgg<br>cgggaaggaggctggtgccagagtggattcggatt	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	438	118	NA	intergenic
0	chr9	10828107	10828426	1000947	0	-	Yc1RG60; RIP_Alu_chr9_010_01	ATTTAGGGCTGTGAATTCCTCTC	ACACTTTTGAATCTCAGTCCGATA	SINE	Alu	Yc1	tatcctaaatatatatgcacctaacacagaagcacccatatttatatagcaagcacttggagaccttcaaagagacataggatctcacacaataatagtg<br>gaagacttcaaaactctacttacagcattaggcaggtcttcaaggcagaaaattaacaaagatattctggacctgaactcaacattggaccaaatggatt<br>tgatagatctctacagaattcttcaatccaaaaagccagattatacattctctttgttgcatggcacatactctaaaatcgaccacataattgaacataa<br>atcaatcttcagcaaacacaaaggaaccagaatcataacaaacacacttttgaatctcagtccgataaaaatagaagtcacaact<font color="green"><u>AAGAAAGTCACTCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCCCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTCACTCAA</u></font>aaccatgcaattacatggaaattaaacaacgtgcttctgaataaaatttaagctgaaatcaagaa<br>gatatttgaaaataatgagaacagagatacaacataccagaatctctagaacacagcaaaggcagtattaagagaggaattcacagccctaaatgcccac<br>atcaaaaaattagaaagatctcaaattaacctaacattacaactgaaagaataagataagcaagagcaaatcaaagatagcagaagaccagaaataacta<br>acatcagaactgaactgaaggaaattgagacagggaaacctattcaaatgatcaatgaatccaggagctgtttttttttttgaaaaaattaataagatat<br>ataggccactagctagacta	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	551	216	NA	intergenic
0	chr1	158177058	158177369	1000948	0	-	Yc1RG75; RIP_Alu_chr1_154_01	AACTCTGTTTTGCTGCATCCTAT	ATGCTCCGGAATAACTATTGAGT	SINE	Alu	Yc1	ggaagatttcaataacccactttcaacaatagccataccatccagacataaaacaataataaggaaacactggacttgaactacactttagaccaaatag<br>acctagcagaaatatatagaacattccccccaacagcaacgaaatacatattattttcaaatacatatagaaaattctccagaatagattatatgccagg<br>ccacaaaagaagtcttaataaatttaagaagattgaaattataacaattatctttttggctacaacagaataaaactagaaagcaataacagaataaatt<br>atggaaaattaacaaatatgtggaaattaaacattatgctccggaataactattgagtcaaagaagaaattaagaagaaaatt<font color="green"><u>TAAAAATATCTTGAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCTGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGATGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGACAGCGCCACTGCAGTCCAGCCTGGGTGAAAGAGCGAGACTCCATCTCAAAAAAAAAATAAAAT<br>AAAAATAAAAA</font><font color="green"><u>TAAAAATATCTTGAGGC</u></font>aaatgaaaatggcaacataacataccaaaatgtataggatgcagcaaaacagagttctaagaaggaggttta<br>aaggaataaattcctgcatccaaaaagaagaaagatctcaaataaacaacctaacactacacctcaaggaaactggaaaaagaagaacaaaataagccca<br>aagttagcagaaggaaagaataacaaaaatcagagtaacacctagaaaaacaatagataaggtcaactaaactaagagttggttttttggaaagctaaac<br>aaaattgacaaacccttagctatactaagcaaaaaaaaaaaaaaaaaaaacaaaaaaaaaagagcaagaaagaagactcaaataaataaaataaaaaatg<br>aaacaggaggc	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr19	837878	838175	1000949	0	-	Yc1RG94; RIP_Alu_chr19_000_01	GAGCTGACTCATGGCTGAAAC	CATGACCGACCTGATGTGTATT	SINE	Alu	Yc1	atattatttacattatataatatataatattttaaaatatacatatatattttttgagacagggtctggctgtgtcacccaggctggagtgcagtggtgt<br>aatcatggctcactgcagcctcgacctcctgggctcaagcaattctcctgcctcaaccccccaagtagctgggaccacaggcatgctccaccatgtccag<br>ctaaagtttttctttctttttttttttttttttggttggctgtttaattttttgtagaaatggggtcttgctatgttgccctggctggtcttgaactgcc<br>agccttcagggacgctcctgccttgacctccccaaatgctgggatcacaggcatgagccaccatgaccgacctgatgtgtattaaaga<font color="green"><u>ACTAGAGCTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAA</font><font color="green"><u>AA<br>AGAACTAGAGCTGTG</u></font>ctgtggccgggcgcggtggctgttgcctgtaatcccagcactttgggaggctgaggcagatggatcacaaggtcaggagttcaag<br>accagcctgggcaacatggtgaaaccccgactctactaaaaatacaaaaattagctgggtgtggtggcagatgcctgtaatcccagctacttgggaggct<br>gagggaggagaattacttgaacccgggaggtggagggggcagtgagctgagatcgcgtcactgcactccagcctgggcaacagagcgagacaccgtctca<br>aaataaaagggttattctcattcaacaaaagtgctgttggtttcagccatgagtcagctcatgctgaggcaagctgtttggcttgcagtcctcagtttcc<br>cca	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr21	41750483	41750819	1000950	0	-	Yc1RG97; RIP_Alu_chr21_040_02	AAGTGCACACTTTGACGTTCAC	CCTTGATTGGCATTCAGGTTTA	SINE	Alu	Yc1	aaatacattttaactacccaagaagcacattaatagagtcttcttttaagatactcaaatacgtgacagtgggaaatgaaacataatttctcctcccctt<br>cctctaatccactcatgatttcagaggcaaccacagttaacatttgggcagatatctgctgatccaggcctctctgttcatttgcatacacaaatttatt<br>catataccactgcctttggtacataacattacagattgttatgtaaccactttagactatgtagtggagatttttctgcagggtatgtgtacatatacct<br>tactgtcttttatgtaactgcagagtatagatgtaccctaatttatttacttatttatcccttgattggcattcaggtttatgt<font color="green"><u>ATAAGTTTTCATTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATAAGTTTTCATTGTT</u></font>aaattatgcatccgtgcatttgggggtgaacgtcaaagtgtgcactt<br>ctgagtttttccataggataatctttgacgttgcaagagggattgaaaagtatgcaagtctcacacttgaaatatactggcaagttgcccttcaaaaatc<br>aaaaggcttcaccaatttacatgcccacctatagaggtttttatttcccataccttttgtcaagaccacttattttcaaacattttattttttgttctaa<br>tctcctgtatgaaaagaatctctcattttaatttacattgatttgttcaagttctaagtaaattttgttcagcaattaattaaaacgtaattcatttcac<br>ttgtgaaaaggtgacatttttgcaatattaagttgac	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	441	88	NA	intron:DSCAM:NM:001389:3/33
0	chr20	35288949	35289263	1000951	0	-	Yc1RG101; RIP_Alu_chr20_034_01	CCAGCCAAAGAGATTACCAAAA	GTCCAGTCCATTTCTCAAAGAAG	SINE	Alu	Yc1	attcttaattaaatgactccatgagagaaaaatgagaagagttcaactttggactggatagccaaagaccttgagatagaaaagagtgaggatataaaga<br>atggcaaacccactaaggaaagaggtgaaaagtgaggtaagggaggtgcccagggcttagtcattagaaccagttgtactcagaagccattaaaagatcc<br>cagcaggagaggacccacggtccagtccatttctcaaagaagtaaggtaacctactttcatgttatatagctagtcagtaggaagacttagattcagctt<br>gtagttttttaaagacacgtaacagattcagaaaattagataagtgaaatttttagatctgctcagaaatatcaaagtatatcat<font color="green"><u>ATAAATATATCTCCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACACAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA<br>TAAATAAATAAATAA</font><font color="green"><u>ATAAATATATCTCCC</u></font>actatgtattttggtaatctctttggctggctcagccttctccagactgagctgttgatcttgcaagatg<br>attctcataccgagctatttcgttttttttcctagcaactcataaaattattttcttctctttttttaaattttaggtcgaatgcaattcccgcctgaac<br>cctataaatacaactttgctaaaggtaatgtgccttcttccctcacttccaacccttatatgtgcttcagattaatcatattttctggaataattgctta<br>gaaaggagcaaagcttccctctctttggttatctcattctcttctttttctttgagacagagtcccgctgtgttgccctggctggagtgcagtggcgcca<br>tctcagctcactgca	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	541	235	NA	intron:NDRG3:NM:032013:12/16
0	chr9	13840788	13841082	1000952	0	+	Yc1RG103; RIP_Alu_chr9_013_01	GGCATTTGCATTCTGATGCTTA	GACATGTTAGAGAAAAGGTGACATC	SINE	Alu	Yc1	acgagtacgtgtctgtatgcgtaacaagtaggttactgacagacatgtcaaaagagatagataatgaaaatacaatggccacaatttgaaattagatatg<br>caaattaaagccatttctccctacctaggaatttttctgagttgctgagaaaatagcaaaaatcggattgggaatagttttgctttattttcaaaattat<br>ctgtaatatttcttctatttattgtaaacaccttaatgataggtagaatgccatttaagcactttgaagtcccacaatgtgttattgaagctaacatgaa<br>aatattgcttaaatgctaattgtgtttgtggacatgttaagtttttaagaaacagaaataagcaggcatttgcattctgatgcttaaaaac<font color="green"><u>CCCTGTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGACACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>CCCTG<br>TTTA</u></font>gtgttttaatctaatgttgatgtcaccttttctctaacatgtctattccaactaaattcatattaaatttcaaattcataagacaatgcagaaagc<br>acagggtgtgcttgtcacacgggtggcttcaggaagagccattttaacctaaaacctgagagattagtctagacccagataaagaaaaaagacagaagga<br>aaagacagaaacaaggaaagagggagaaagacagggaaggagggagagcaggaaggagggagagaaaggaggagggagggaagaagaaaaaaaggaagaa<br>agaaaaggaagaaggagggaaggattccacttttccagactcctgaggttggaggaaaggaccttccaccagaagtttgttccttatgtatccat	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	383	79	NA	intergenic
0	chr6	2059661	2059956	1000953	0	+	Yc1RG139; RIP_Alu_chr6_002_01	CAGAGCTCATTATCATCCGCTT	GGGGCAGTCCTACTTTCATTTAG	SINE	Alu	Yc1	ttagctgggtgtggtggcgggtgcctgtaatcccagctacttggaaggctaagccaggagaatctcttgaacctgggaggtggaggttatagtgagccga<br>gatcacgcctctgcactccagcctgggcgacagagtgatcctctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcatcatgtccagtgtttct<br>ttatgaacccaaaagaggtgtatatttgaaaatatgtaatttatttgaactattgtttttttaatttgaggcatattaaaaatctgattagaatattaga<br>aaatatttcacagttttgcctacagagctcattatcatccgcttaagtgatgttttagaaaattattcacttatttagcaagactt<font color="green"><u>AAAAATGCACTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>ATGCACTACT</u></font>gttcaactcctaaagaaaaaaaaatgtatttaatccttaaatactttttaaacttaccaaccccaaatatataataaataattctgacag<br>ggcgaagctcagagacactggcccccaaaaatttgcatagtaataaatatagtcttctaaatgaaagtaggactgccccattctcaacattggtattaga<br>atctaccttttgaatttctttacatttatgaaataagctttattaacgaaatgacaacaaataatataaccacattttcaaaattaaaaaaaatacataa<br>gcaaataataaacctccctcattttttcactaagctacgttttcctttcttcaaaactgttctctgtagtcattaaaccacagaagggacatcagt	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	557	247	NA	intron:GMDS:NM:001500:4/11
0	chr7	52802866	52803156	1000954	0	-	Yc1RG197; RIP_Alu_chr7_052_01	TGCCTTTGTAACTTCACATTCG	GTGGTGAATGGTTTGCACTTTA	SINE	Alu	Yc1	ttcagcttctgcatcttcagggaggagttttctgaccacttaattgaaaacagaacctcctaaataaccccttcattatttctattgcaaaactctgttc<br>atttccttctccacggggatcactggcttgtaaaggtttcttttcttgcttgttgtcttgttcattgtctgtcccgtccaatgtcacttaagctccacaa<br>cggtgtggactgatgatatctgtcttcttacttgcatccatccccaaaatctagcatcgtgcgaaagagacaggaattgctcaaggaatacttgtggaat<br>aaacatgtatgtttgcttttgtttgaataagttacatgcatttgccattgtaaactaaactggtgtggtgaatggtttgcactttatttaag<font color="green"><u>AAAAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAATGA</u></font>a<br>ttaggctattcgaatgtgaagttacaaaggcaattacctttttctgctacaagaaaaattccttcatccttctcttatatatgattgaaaatatattagt<br>aaagccttcttcgcttttccttgcccaatatgaaggaaaagtctcataactgaattctaagcaaatttttgcatatccttcaatttggaagtttctctcg<br>tacatagaattgtaaactgaattgggtttgttttgtattcttagactgtaaataaggccagaaaataataaataagtaaataatgaggtggaaagaaaca<br>cacaagtaaaaggaaaatatgtgaggataggtgtctggcatgaaaaatcctgaattttgtaaaggataagtgagaatagagggcatttctc	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	56	368	69	NA	intergenic
0	chr16	82164473	82164673	1000955	0	+	Yc1RG203;pAlu16-81903593; RIP_Alu_chr16_080_01	CACGTGTGTATATATATGTGTGCGTA	TGGACACTCTATTCTGCTCCATT	SINE	Alu	Yc1	ggtggggggtgtttgggtcatggaggtggattctctcacgaatagcttggtgctgtccttgtgataatgagaagttatcactctgtgtatatatgtgtat<br>atatacacatgcgtgtgtatatatgtgtatatatacacatgcgtgtgtatatatacacacatgtatatatatgtatatatgtgtatatatacacacgtgt<br>ggatatacacgtgtgtatatatatgtgtgcgtatatacacatacacacacacatatatgaaattgtaaattacctagagcactcaaaacaattttgaaaa<br>gaaaggacaaagttggataaatacactactgtagttcaagacttaatataaagctgcagtcatcaagataggtaaatattagtgtaag<font color="green"><u>AATGGACACATG<br></u></font><font color="red">TCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGA<br>GCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAACAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGGACA<br>CATG</u></font>gataaatggagcagaatagagtgtccagaaataaatccacagcagcgtaatcagtaccaaggataatctgtagggaaaagtgtggtgttttaacca<br>gtagcaccagagcaactgaacatttgtatgaaaacaaaacaaaacaaaaccaaaccaggaatctcagccctttacttacaccataaacataaataaactc<br>taaataaagtatagacataaatgtaaaagttaaacctatacactttttagaagaaaactgtcataaccttgaggtgggcaaagataagaaacaaaatata<br>catcataaaaaatcctgacaaatcaggcttcatcaaattaaaactttctgcctttggagagatagcactgcaattacaaaaaggcaagctat	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	59	524	220	NA	intergenic
0	chr12	79707668	79707972	1000956	0	+	Yc1RG207; RIP_Alu_chr12_078_01	AGAACAATACTTGGCACCAGAGA	AGTCATCAGAGCAATGCTTTTCG	SINE	Alu	Yc1	gtaccaagtttttggtccaaattgtgtaggataagttaaccttaaattgcattctattaaccaataagagggtatttccgtaagcatagttatgttgaaa<br>tacagttttaaaaagcaaaaaaaaaaaaaaacaaaataaaagatagacctgctaagcttagtcaattaaaaattaatggtgagacagaactacagggtag<br>attaaagctcagcctatatgcatcaccatgactccgcttactactgatgtctccttcggcttgttgcttaatcctttcataaaatgggattagtatttac<br>tcacctccatgagttgtgacacactctaaatgagataattaatgtaaagcacttagaacaatacttggcaccagagaagctctcaaaaaaat<font color="green"><u>ATTAGCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>ATTAGCGG</u></font>tttttgttattaaaaacattggtcagagcccttatttccttgccagccgaaaagcattgctctgatgactagatttacatccttcct<br>tttttgaggacagtgggacagcctaagtgttcagaaggcattgtcatacatggttttaataaaaaagtggatatctgagcctagataccatgtgcgagag<br>tctgtgggatgtgaaaagattgcacaaagacgaacccagtttaaggctcagcacgtgtgagtggaagatagtgctaccatggtgtgacctcagtgattgt<br>gcaccaattaattcctctaagctctgacaccccacaaaggaactcaaagtttcaggctctgctaaaataagacagacaatagcaagtgttggcaaagatg<br>tgaaa	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	63	426	113	NA	intron:SYT1:NM:005639:8/11
0	chr14	86342851	86343156	1000957	0	+	Yc1RG279; RIP_Alu_chr14_085_01	CTTTGGACCATAATTTGAGCAAC	GGGACTGGGATAAGAGAGTGAAT	SINE	Alu	Yc1	attcatcaacatcatgaataaccatagtaaatagacatttagagccatgaatggacttgctcaagagagcaattaaatcagtggcccctgggcttgatgt<br>tttatttcctttgaaaaatattgttgaatccttattatgtgtgtttactgtaaggaatacaaagataagaaagacaatttcaacctcaaaacaatgcatg<br>attctgtgagagtgaaaagagagggaacatcttgtgcatgaataataaagagaataagccaaaaagcaggaggggactgggataagagagtgaatgctga<br>gcctatgagtacacttgttccaatttcatattcaaacctaaagttgtgctcctcctcctaaatcatctcccagtgattttcttgc<font color="green"><u>AAGAGTACTAGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACAAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTACTAGTTCC</u></font>cctggaggtagacagaaggactgacgctgtggctcatattaaatcctgtcccagctcctgggtaaaaagagcaatttat<br>ctgagtttagggtagtgttgctcaaattatggtccaaagtcttctgcctcacagatactcagagtgccttttaaatgcagatcagtttcaaaatgtatct<br>cagttgaaactgatcaaatgtatctcagttaagatacagatcaaatgcatctatttctaatctgaatctcttgggagtaaaagccagagcttatatttga<br>aaccatgtcctcaggtgattgttttacccaccaaaatatgcaaatcaatggtgtggggcaagcaagaattacattgccagtgatttaaatgagagtcttg<br>gttagg	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	53	567	246	NA	intergenic
0	chr13	76311608	76311924	1000958	0	+	Yc1RG345; RIP_Alu_chr13_075_01	GGCAAATCATAGATTTCATAGGG	TTGGGAACCTCAACTAAGAGACA	SINE	Alu	Yc1	gaatagagttgttggagatgatataactagttataatgagctcatactggggtaaggagggcccctaatcttaatatgactggtgtccttctaaaaagat<br>ggcctgtgaaaacacagacacacaggaagaatgccatataaagataggattggagtgatgcatctacaagccagagaacacctgcgattgctggcaaatc<br>atagatttcatagggagtgtggctttgctaacaccttgattttggacttgtagcatccagaattgtaagacaaaaaatctttgttgccttaagccacctg<br>gtttgttccaaaaggaacaaagtaccaaatatagctctaggaaattaatacagataggtacatgttttagttaatacctttttt<font color="green"><u>AAAAAAAAAAAAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA<br>TAAAATAAAATAAAAAA</font><font color="green"><u>AAAAAAAAAAAAACTT</u></font>tttactttgaaataaatatagattcacaggaagctgccaaaaaaaaaaaaaaaaaaaaaacacagta<br>caaaaatgtcctctgtactcttcacccagttttccccatttccagcagaatttttttggtgtctcttagttgaggttcccaaagaggaatctgaatggat<br>tccttttctttgaaggctacagatatcccaggtcactggccagcctgtggatgagttccataagaagacagtcgtcttggccaaatgagctgtggtcagg<br>agtgttgttttttttttggctcattcagttcaggttgacgtgggtactgtgaaggaggtttgtgtaaggtagattcaccaaggcgattcaaatatagtaa<br>aaatttctgtgtaaggg	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr7	42426952	42427237	1000959	0	+	Yc1NBC01; RIP_Alu_chr7_042_03	AGTACGTGAGGTTTCTATGCCTTG	GATTTGTCCATAATAGCCCCTAACT	SINE	Alu	Yc1	tgttttattaagatataatttacatgacataaaattcaccatctaaaggcacacaattcagcgttgagtagatttaccgagttgtacaaccattactgct<br>gtctaattacagaacattttctccataactcacttaaaaaagaaagcaacagaaatgtattttctcacagttctgcaggtcaaaagtctgaaatcaaggt<br>gttggcaggatgatgcttcctttgcaggttttagggagggacccttccttgccccttcccagtttccagcggccactagcgatccttggcctgccttggc<br>ctggggctgccagagactgtggctccctccagtctctggctctgttgccacatggccttctctctgtgtgtctctctctgagtct<font color="green"><u>TCACATGGCCTTCTT<br></u></font><font color="red">TTTTTTTTGAGATGGAATCTCTCTCTGTCGCCAGGCTGGGGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCT<br>TGCCTCAGCCTCCCAAGTAGCTGGCACTACAACTGCATGTCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGCTTTCACCATGTTGGCCAG<br>GAAGGTCTCAATCTTTTGACCTCATGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATACAGGTGTAAGCCACTGTGCCCGGCC</font><font color="green"><u>TCACAAAGCCTTCT<br>T</u></font>ctaaggatgccagtcattggatttagggcccaccctaatctagtatgacctcatcttaccttaactaattacacctgcaaagacccttattccaaatag<br>gtacgcattctgaggttctggttgggcatgaactttggggtacactattcagcccagtatagacacatgagggggattcactttctgttcatgtgattcc<br>cttttcagtacccattttgtacatgtaggtttgagagggtccaatgcagtatggtgctgtttgctgcctaagtcatgaattatttgagaaattagacaaa<br>aatattagctgatggaagtcaaaatatcatctctttttactgatagtgtaacttgaagaatgtagcttatatctggaaccaagtga	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	481	159	NA	intergenic
0	chr7	33403547	33403859	1000960	0	-	Yc1NBC02; RIP_Alu_chr7_033_02	TCTCTCATGAACATAGATACAAA	CGTGCATTCTTGAGATAAAT	SINE	Alu	Yc1	ggggaaggggaggggagaggagggggaagggggaaaatataaggaagaacatcaaaaatagaactgattaagcagaagaaagaatctgtgaactcaaagt<br>cagattattagaaaatacagtgagaggaggaaaaaaatgaaaggaaagaagaaaggctgcaagatttagggaacagaatcaagcaaaacaataagagaaa<br>accttccaaatctggagagaagtataaatatccagatataagaaactcatgacatcaaaacataaaatgtggggggatggagtaaaaattattcacataa<br>ctgtagaaaaaaactaaattacaaatcaatttctctcatgaacatagatacaaaaattctaaaatacagtttggcaaattaaatc<font color="green"><u>TAAAAATATAGTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA<br>ATAAAAAAAAAAA</font><font color="green"><u>TAAAAATATAGTGAA</u></font>aagataatatatcatgaccatctataatttatctcaagaatgcacggttgggctaacattaaaaattaatca<br>atgtaatccaccatatttaatcaaataaagaagaaaacgataagaatgtctcagctgatgtagaagtagtcttgaaaaaatccaatatccattcctgatt<br>acagtctcagcgacctaggaatagaagggaacttcctcaacctggttaaaaaaaaaaaaaaaatctaaaaaatacttatagctaaaacatacttaatggt<br>gaaagacaatgtctgttctcaccatttctattcaacattatcccagaggttctagccaaggcaaaaagcaagcaaaaacaaacaatccagttggaatgga<br>agaagtaaaactg	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	443	102	NA	intron:BBS9:NM:001033605:15/22
0	chr14	35305304	35305621	1000961	0	+	Yc1NBC09; RIP_Alu_chr14_034_01	GCCCAGCTGGAAATAGCTT	AGAAATTCTGCATGTGTCTCAG	SINE	Alu	Yc1	gtttctctcttgttgccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccg<br>agtagctgggattacaagcatgcgccaccacgcccagctaattttgtattttcagtagagacagggtttctccatgttggtcaggctagtcttgaactcc<br>cgacctcaggtgatctgcccgcctcagcctcccaaagtgttggattacaggcgtgagccactgcgcccagctggaaatagctttttatgaggatagtctg<br>gaatgtatataccttccgctaaaaagctatttttagtagccatttaaatttatatctcaaaaattcaatggaccaaaagcaaattat<font color="green"><u>AAAACTTTCTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTTTCTATA</u></font>actgagacacatgcagaatttctacagggtatttggggtagaaggtaaatagttaacagcaaagggaaa<br>gaagatctagaagcctgggaagacctacttgaaataagagaccgaccctctgtttgggtctctaaaaattgaatatgctgaatctatagcatacttcaca<br>actgctccccattctgcctcattaacctttattttctagtaatacaattgcaagaatatttataaaaaatactatgcttggacaattaagtcaatatttt<br>ctaacagtgaactaatttgaagtttagagttaaaaaacaaaaaccttaaattaagtttatgtgatatctcattttaagtggaagaaaccagagcatttga<br>gcgagtcagctattcaca	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	63	490	159	NA	intron:BAZ1A:NM:013448:3/27
0	chr7	83728374	83728687	1000962	0	-	Yc1NBC53; RIP_Alu_chr7_083_02	AAAGCTATCAACCATGCCAACA	GAAAATGCTATTTTGGGGAATG	SINE	Alu	Yc1	cgtaaaattacaattctcaaatgaaaacatcaagatatctaaataatagccagatctcataagccattagatgaaatataactgaggtgatgacactgtt<br>taaactcctcattaaaaaaagcgtttatgattcttttgtgaattagtcaaacttgttttatagcatattgtggttcatgcacatttaattttaactcctg<br>agcttacaaatcagctgcgttaagctgcatttatgttgtgcataaaacattaagctactataggcaaagttatgtgagttttgcattgatagcatatcac<br>aaaggagagtttctccattactcgtaaataaagaaaatgctattttggggaatgtatatgtgaaagtaattcaaatgcacttttcttttaaaaaa<font color="green"><u>AATTC<br></u></font><font color="red">AAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAA<br>AAAAAAGAAAATGT</font><font color="green"><u>AATTC</u></font>ctgattaatctctggttattctatccaatttatcttctgctataactattgtccacgattgttgttattacttttattact<br>attagaggctattattgttggcatggttgatagctttatcaaaattatataatttgattttaataattctgtgaaagaagcattatctctgtttctcaat<br>tgaggaaactaaggctcagggaagttcaacatgttacataacatcacacagccagtatatcatctgtcctcatgcccatcataacaaatggcctttctaa<br>tggcatcaatattataccccattgagattatgctatatgatgtgcttattaatacttagttctaaacactcaaaactttgaatttcaagttaaatccatt<br>acaatttgcattat	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	505	186	NA	intron:SEMA3A:NM:006080:4/17
0	chr10	10708544	10708852	1000963	0	+	Yc1NBC60; RIP_Alu_chr10_010_01	GAAACCGCCAAGATTCTCACC	TCTCCATCATGATTCCCAACTGA	SINE	Alu	Yc1	ataattttaacctctcccttttccagatgaaaagtctcagtaaaaaaacagctactgaatgtgcagcatttgtcagatgccactagtcaactcacttcag<br>gtcggggtgctgtgttggctccgtgtctctcaagaggaaataagtcagtgggggcaggttgtgggttggtgcccagcatagcaccaggtgaccacacacg<br>ctcctccacctccaacttattaatgatctcaagcacttcacaccatttctgcccttaagcttagttgaagaatcaaagatgagtctcaagttggtagtgg<br>aagtagcaaacaaggaaggagagaaggccctgaaatcacctatctcagaaaccgccaagattctcacctaaggaggatgattatgtgtttgt<font color="green"><u>AAGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG<br>AAAAAAAAA</font><font color="green"><u>AAGAAAGA</u></font>agatggtttaacctttagcctattttcagtggttggcttggttttgcacacacattcacacacacatacacatacgttcatgc<br>acacaccacagcatacatttataagccaaaggccctctaaaataagtcagttgggaatcatgatggagatgtgaataatagaagaaaaaatgattatgca<br>tcccgggcaatccaaaaggttcctgttcatttggaaatattttaagatgtcagggctgaaaggcaccatgctctttgaataaatgaattggtctcctggc<br>gttgtgtctatggaagctatagttattactactcagacagctgactttttgttttaattatgcaacagaaactggaaaaatgtttggggtcaactttcta<br>ttttagtga	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	522	205	NA	intergenic
0	chr6	91237591	91237896	1000964	0	-	Yc1NBC63; RIP_Alu_chr6_091_01	GGTACTCAGTAACACATCAAGA	AAGCTGGGTGGTGGGTTCAC	SINE	Alu	Yc1	tacctgtcactgtttattatcctgaatccattgtggcttttcaagacctaaaatcatataattttagcactatatggaacacttctcatcacattcttaa<br>cccagccccaacccctctccagataaagagaggttgaagtgatctgaagcagacattacagcataattagaactcacatacgatggattctactcaaagg<br>tacttttgtattgcatttcattttacttgttgcagtcttgaatttgagtgtttgtatatatgttgaagctagatataagattcttcatgaatttatttta<br>agttttattttctataactccatgttcttttttaagtctcttctttggtactcagtaacacatcaagaaaaaaaaggtgcttttt<font color="green"><u>AAAAAGTCCTTATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAGTCCTTATGA</u></font>aacccattttagtttctgtgtcctttgaaaggctttaatatatgaaatataaatatgtagacaagaatgtatataatgt<br>ataagttatgaaaataaaatgagcacttgtgaacccaccacccagcttaaggaatggaacattagcaatcccagtgggggttggtccctgtgtgttcctc<br>gcctgtggccttccctgtcatttccccaccaaccctcagtgccatgttctgtcatatgtcatgtttccagatatcataaataccttttatctgattaaga<br>agtcctcttcccactgggcacaggggctcacacctataatcccagcacgttaggaggctgaggcaggaggatcgcttgagcccaggagttcaagaccagc<br>ctgcac	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	502	181	NA	intron:MAP3K7:NM:145331:13/17
0	chr20	26149021	26149313	1000965	0	+	Yc1NBC64; RIP_Alu_chr20_026_02	CAGATCCTGGTTCGTAGGAGGTG	CAAGCTGTGTATTCTTGATACTGC	SINE	Alu	Yc1	ttccacgtaacttagtaaaaatctctgtgaatagttccccaaattctgcatttttaacaagctccccgcttatggagctgtctccttgagtgcaggaagg<br>acaggctgttttactttataactgggacagcaagtacagatcctggttcgtaggaggtgcctagaaaatacatgataggtaattagttaaattgaattaa<br>taactataataagtagtaaaacttaataaatgctagtatttttttaattgtatatatctactactagatacaaactttgagtggtggtgttcatttacca<br>aagttttggtttttacacttttccaaaaaatgtcaattgctattctgtactctatacaatcagaaggaagtcagtttgagcacat<font color="green"><u>AAAAATGACATAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAATG<br>ACATAATA</u></font>ttctgcagtatcaagaatacacagcttgatacttcagatttatttttatctttgaaagatattaataaaataagtaatttataaaaacaaag<br>agattttaataactgaaacaaaaatactaattatgataagactaaacatgtaatgtagctgtaggttgaaataaacttgaaacactctagtgtctgcata<br>ccttttgctttccccaagaactatttctgcaaaatattcactagcctgcagagataacccacatagactatgttattaatatgcaatcttccttcctgaa<br>acagtttacatatgcagtatatagcatctagaccttgtaattgaattttcaaagtttgctgtggtttgggagctgcatatgggtcagtaatca	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	600	292	NA	intergenic
0	chr20	47544741	47545034	1000966	0	-	Yc1RG95; RIP_Alu_chr20_046_01	ACCTAACAGATGACCTGCTGAAA	GAGGTAGAGAAAGGCAAGCATTC	SINE	Alu	Yc1	cttcactcatgttggagacttacaaaaaggtctataaaccaactaataggggaggtagagaaaggcaagcattcagttccttttcctttaaagactgcaa<br>caccggctgggcgcagtggctcacgcctgtaatcccagcactttaggaggctgaggcgggcagatcacgaggtcaggagatcgaaaccatcctggctaac<br>acggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggcgcctgtggtcccagctacttgggaggctgaggcaggagaatg<br>gcgtgaacccaggaggcagagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactggctc<font color="green"><u>AAAAAAAAAAAGATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAA<br>AAAAAGATTGC</u></font>aacaccaatgcctctgaatttcagcaggtcatctgttaggtgccaggtactgtgccagttacttactgcactagtccatttaacctttg<br>caataatcctgtgacaaaggtattactatctttatcaccttgggaaactgcggcccaaagagggatcactggactatcaataagcaaatcaaactttcaa<br>agtctcaatcaactctctgccaatcctacatataaatgcttttcaataatcaagaacaatccagttttttgatgctgcttccagacagataacctcctcc<br>tgaagaatccacagtggttttcaacaaaaagtaatcttccagggtcctgagtcctgttatttctcaaaatttttatgatacatagcacttataa	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	701	390	NA	intron:ARFGEF2:NM:006420:1/39
0	chr19	13479571	13479870	1000967	0	+	Yc1RG130; RIP_Alu_chr19_013_01	AGTAAGAGAGGGAAGCTGTCAGG	CTATTGCAGTCCCCATTTACAGA	SINE	Alu	Yc1	tgggcttgctctgtcacccaggctggaatacagtggcatgatcacggctcactgcagccttgacctcctgggcacaagcgagcctcctgcctcagcctcc<br>cgagtaggtgggactacaggcacacttcaccatacctggttccactaccatttttttcttgaggctattaactcaggtctgaacgatgacaacatcctat<br>gtttgtaaccactatggtatctactaggaaagtctatgatcaaaatgaaggttcaaacatatagcctgaggctttgcttcttgattgcaggaacttccca<br>tggctcttgatgggtggagaccacagtaagagagggaagctgtcaggatagctcgaggggccatgccactccaagggctt<font color="green"><u>AAAAATGTAATGTGGGTGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCTCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATGTAATGTGGGTGCT</u></font>aacagatgcagtgtggtgcagtggttaaggtgctggatactcttggtgtctggccaagatcccattttctttctggtgta<br>cccgccctccagctgctatggatgttggttgctaatgcctcccagctgcctctcttcttagtagaattgcccttggtgatcaaaagctatctcacctggg<br>agctactgcgtctctacctcccatccacagtgactgactatagaagtacaaaaggccggcatccttgccatgcattggaggacaactctggtgtcacaca<br>cactccagctgaaattgcgtccctgctctatccattccccagccccaccctgctgatctcctgctgtctctcccaagagccgtcccccaataaagcaggt<br>	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	59	887	568	NA	intron:CACNA1A:NM:001127222:4/47
0	chr21	24828961	24829186	1000968	0	+	Yc1RG140; RIP_Alu_chr21_023_02	CTGGTTATCGATTACAGAAGCA	TACTCTCCCACATCCCTTACTTG	SINE	Alu	Yc1	tgattaaacgaaaaaaattacgcttttaaagaattaaagttagttttattctgaagtcttactcaggactatagactgaaccagcctctaaaagagcagc<br>catttagaaaggttctattagttctagcacagtattttagccctgtttatggacaggtggtagaaattttaaaaattttattagaattggttaggaaaag<br>taaacagatactttgtgcaaaaccacattcaactttctcagacattccattaaagtaaataacatcaaagttttggtgtaggagtaggagtagatctggt<br>tatcgattacagaagcataatcactaacatcaacagatgttatctcctgtataggaaaaagcaaagactacatcatttactgttc<font color="green"><u>AAGAAATATAGTGAC<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAAATATAGTGAC</u></font>tcggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggtcgaggcgggcagatcacgaggtcaggagatcg<br>agaccagcctggctaacacagtgaaaccctatctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcgcagctattcgggag<br>gctgaggcaggagaatggtgagaacccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagaacgagactcagtc<br>aaaaaaaaaaaaaaaaaaaaaaggaa	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	770	451	NA	intergenic
0	chr2	150759310	150759621	1000969	0	+	Yc1RG148; RIP_Alu_chr2_150_03	GTTGGAAAGTGTGTCCTAAAGCA	ACACGTTCTGAAACATCCATCTC	SINE	Alu	Yc1	ctgttaagagactgatcaagtcttaggtgactctccaggccaaaaggaattttaagccaccatgtagtgctatctcccttactttgtagcctctgaatta<br>ggggcacatacagagcaaaagtcagattcctgattaataatccaggaccctttttaaaaaaattttatctcatcatgcttacactgtattctgatatatt<br>gtgtaccataaatataggaaagtacagggaaaactgaaataattatgtaaaaatattctagcttttgcagttgctaggtatactttaatttaggcaatag<br>acatgcttctaaaacacctaagcaagaaacacgttctgaaacatccatctctactatctaaagaatttcgctaagagaaccaatataaaac<font color="green"><u>AAACAAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAACAAGCA</u></font>aaaataaatatgaaactggatgctttaggacacactttccaactttattccaaggacaaatcgcacccattcaaacctc<br>cttttctctattcttctctcttcttctcccctttgtgaaaaatatctccttcagcacttgtgaaaactttaaaatttgtgctccaatttaaaatttgatc<br>attgtttgaaagtatttaattttttaaaggaaaatacttattggactaataacaatattagcagttgttctttactgtgaaacaattgagatagttgttc<br>ttgacacgtggctgaggctgtctatactgagagagtgggactttgattgcaagaaggggctgcttatgagcacattttatggctaatagacatgaaaaag<br>ggtctaggaaaa	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	436	115	NA	intergenic
0	chr2	171339889	171340157	1000970	0	-	Yc1RG155; RIP_Alu_chr2_171_01	CATAAGTTAGCCCCACTGATATTTG	CCCAGCTTACTCTGGAAATCAG	SINE	Alu	Yc1	ttttctgtaagtcatccctaaaccatcgtgctcaggggtaggcagatatttactgtaagtaactagagcatgctgtaccagtcacggctaagaggacaac<br>tgctcagctgatggactgggtagtgttctcctagagcaccatgttgggagggattccaaggccacatcgaggctgtgaagaaaacatgccttgactgaag<br>agccaggtctgcagctagggttgaagagtgaagctgtgctcatacccatgtatttgccatccccatgccaggaggtttcctcacattctctttcctcttt<br>ttctccattttgttattttcttcattgctttttctttttgctgcttcattgttattatctaacataagttagccccactgatatttgtttt<font color="green"><u>AAAGAATCC<br></u></font><font color="red">TTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATCC</u></font>ccaagcaaggagttttaattca<br>gccactgatttccagagtaagctgggcaagcaaatccaaatgtccagatattatttaatgccttcataatgtcttttctcttgttttcctttattatttc<br>ttctttcctacaactgaactaattcatgaggttgcttataacacagaacatttggaaaatcagaaaagatagcctgggcttattattctgccaccattca<br>gtgttttggagaacagtgaaatgaatattaattcttgcatccactttttcaaaccaccactacagattcctggctaaatctacagagctatcaactacag<br>aaatgatttttctaattgactatgtgaaaagctgctgccagcagcatgggctccatgaaaaaggcaggg	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62.5	364	86	NA	intron:MYO3B:NM:001171642:25/33
0	chr2	34643649	34643937	1000971	0	-	Yc1RG158; RIP_Alu_chr2_034_02	CCATCCAGGAGTCTACCAAGAGT	AATGCCGTTTCTGACACAGAG	SINE	Alu	Yc1	ttactggcttattataaaagatatgataaaggagacagatgaacagccagatcaagagttatataaggcaaggtctggatggggtgccaaccacaggaac<br>ttctttccttgtagcattgggtcgcagcagcctcttgccatgtgggtgcttgccctatcctttttaaataattgtggacaccagacgctctcagaacctt<br>gtattcttgagattttaatggaggcttcatcacctagacatgattaattatttgacttcttatcagctcccctcccctccctggagaataggggatggga<br>atgaaggttccaaggttctcatcatggcttggtctttctggtaaccagccccatccaggagtctaccaagagttacctcatt<font color="green"><u>AGAAATTCCAAGAGAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGACGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AGAAATTCCAA<br>GAGAGTT</u></font>aggagctctgtgtcagaaacggcattgaagaccaaatgttagaacaaaagatgatgctggcactcctgttacttgggaggttacaagggtttt<br>agaagcttgtgtcaggaaccagtagcagagactgacctacctacctaccttccttccttcctccctccctcctttcttcctttcctttcatttcctttct<br>ccctctctttcttttttcctttctcttatttttcaatgatattagcgaatatcatcaataatccacaacaaccgtctttatatattagaaagttattaag<br>ctccttgtgataaataaaagtctcccagaatttcagttcttcccgaaagctcaaattttatcattgtcaatgaacactgtcaattgttt	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	63	469	162	NA	intergenic
0	chr6	121319307	121319616	1000972	0	-	pAlu6-121254345;Yc1RG258; RIP_Alu_chr6_121_01	CCTGCAAAGTTAACCGTCTATGA	GCTCTGAACAGTAACTGGCACAT	SINE	Alu	Yc1	gaatttagcattaggataggtttttatatattaggcagctggcttttgccatccagagtgtttcatagaaatcatcccagcccaaattaatgaagaaagg<br>acagattgtttagtaaatagtttgcaaaaactggatcactccgtggagcaaaatgaaactaaatttctgcctaacactacaaagttggatttcaggtaga<br>ataatcctgcaaagttaaccgtctatgatataggagactatttttgtcacctaaggttgaggaacgacttcataaagaaaatctgaaaagcacaaatcat<br>gagctgaaagaatggatttatttgattgtgttaaaattaaagatttcttttaaattacgggtgtcatgaacaaaataaacagatat<font color="green"><u>AAGAATGGGAAAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAACATTAGCCGGGCGTGGTAGCGGGCGCCTGTGTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAGAA</font><font color="green"><u>AAGAATGGGAAAGG</u></font>tatttataatgtctatatctgacaggagatatatgtctacaacacacagggaactttacaaataaataagaaaaat<br>ataggaaaaaacaataaaatataggaaaagtaggagcagactatttgcagaaaaattactcagttatcaggcatgtaaggggatgttcaatatcaagtct<br>agtagggataatggagaaatggaatatagtggacatacaatatgggatatgatgtggcagttagaagtcatagcccagctttgtgtagtaacatggagag<br>atcttatgaaataaggatatatgaaacatatagtaatgttaacaataatagaaaacacttactagtatttactatgtgccagttactgttcagagctcat<br>aacaaccgtg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	891	567	NA	intergenic
0	chr9	73463612	73463913	1000973	0	+	Yc1RG291; RIP_Alu_chr9_070_01	AACAATAGACACCTGAAGCCAAA	TCTGTCAGTTTTGGCAGTATGAA	SINE	Alu	Yc1	agataaatgagatgcagccaggaaaacaaaggatttgaaaacatgaaaggaaaataaaggagcttggaggagataatcagaattataggtagaagtaaaa<br>gagatgatggggaggaggcaatattggaagaaatattggctgagtattcctcggaattatagaaagataccaattctaacatgcagaaagttcagtgaat<br>tctaagcaggataaatgaaaagaaacctcacttacatacacatcacatgtaacaccaaagggaggggaaattcctcagaagtggctggaaataaagacag<br>atcatgtacaaagaatagtcattagactgaagacctactcctcaacagcaacaatagacacctgaagccaaaaccttccatgtgtc<font color="green"><u>AAAAGAAATTACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGAAATTACCT</u></font>gtcagtctagaattctacattcagcaaaactatcttttaaaaatgagagcagattatagatattttcatactgccaaaactgac<br>agagtttacttctaggcaccttcactgaaggaagttgtttttgttattgtttttgtttgtttgttttgagatagagtcttgcactgttgcctgggctgga<br>acacaatggcatgatctcggcttactgcaacctttgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccac<br>caccaggcccagctaatttttttgtatttttattatagacggggtttcttcatcttgtctaggctggtcttgaactcctgatcttgtgatctgcccacct<br>cg	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	64	454	138	NA	intron:TRPM3:NM:206946:3/26
0	chr9	122357092	122357267	1000974	0	-	Yc1RG348; RIP_Alu_chr9_119_02	CCACATGAAATACTATAGTGGAGT	AGCTGGCTGTTGCTGTCACTA	SINE	Alu	Yc1	ttctccataaaataaatgcgttgcagaagaactctgtaaacagcacatatcacgaagccatgaattcagatgcaacatgaggcgcaatttcctcccctct<br>ccgtaactgctttattctagtatttcttaaatatttcaacaatatgatcccacgttttatgccattaaatgtttagattccacatgaaatactatagtgg<br>agtattactaacagtaataataatagtaacaataaaaacagcaatgaaactgataataataaagattataggccaggcatggtggctcacgcctgtaatc<br>ccagcattttgggaggccaaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctact<font color="green"><u>AAAAATACAAAA<br></u></font><font color="red">AATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCC<br>GAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAA</u></font>ttatctgggctc<br>agtggtgcacacctgtaagcctagctactcaggaggctgaggcaggagaattgcttgaacccaggaagcggaggttgcagtgagccaagatcatgccact<br>gcactccagcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaatagtgacagcaacagccagctttaaagtgtgcttgttacataccta<br>ctgatcattgtattaagaaatggctatatgattatctcacttaatcatcataggggccctgtgcaatagaccatttttatgtgcatactacaaacaaaac<br>tcagagaggtcaagtaatttgcccatggtcaaacagctaagaagtagtaaagctaaaattcatatccaagcttttc	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr16	71060318	71060319	1000975	0	+	Yc1NBC23; RIP_Alu_chr16_069_02	TGCTCAGGTTAGGGATGTTAATGC	TTCTGAGCTGCTGGGGGACT	SINE	Alu	Yc1	ctcagcctcccaagtagctgcgattacaggcatgtgccaccacgcctggctaattttgtatttttagtagacacggggtttctccatgttggtcaggctg<br>gtctcgaactcccgaccacaggtgacccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccaaatttttgcctttt<br>atacttaaacatttaaaaatcatgcattaggaattaatatttctttggactcaaaaagcctagatttttataaagcagaaaggatcaaaagtgaatttac<br>agcatgaataggttatatagaagagtgctcaggttagggatgttaatgcattccagtctcttctcaattatgtagcatgatttag<font color="green"><u>AAGAACATTCGGGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAACATTCGGGGA</u></font>tgcttttagtaaagcttaagctgagtttagtcccccagcagctcagaattaatgccttcaaaaatatggacaactctt<br>gataaccacattataaatatgctcttccaacagctgtcagtgtcttgagataagggcctgtgttctattcatctttacatcctcagtgcctagcacagta<br>tttgtcacatggtatacacacaataaaagttggctgatcacctgaataacagagagaaggaacacattaccttttccacaatgagagataaccccccctt<br>ttgttgaactgaggatgcgttttacctgaaaatgctctatgaagaaataatctaatgaaataaagtggaatctgtgaccttagagaagctaagcaaggga<br>ctagctt	Other	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	445	120	NA	intron:HYDIN:NM:032821:20/86
0	chr17	15530765	15531064	1000976	0	+	Yc1RG93; RIP_Alu_chr17_015_01	GGGATTCAAGTGTGGGTAGAAT	AAAGGAAGGCAATATGATGTGG	SINE	Alu	Yc1	tgcattttattgccttttatacaatgtccatgatctaataaggaaggtggccgggtgcggtggctcacgcctgtaatcccaggactttgggaggccgagg<br>cgggtggatcacgaggtcaggagatcgagatcattctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccaggcttggtgacgg<br>gtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactcca<br>gcctgcgcaacagagcgagactccgtctcaaaaaaaaaaaaaataaaataaaataaaataaaggaaggcaatatgatgtggtggtt<font color="green"><u>AAAAGTCCAGTGTC<br></u></font><font color="red">GGCCGGGGGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGTCCAGTGTC</u></font>attctacccacacttgaatcccagctctgcccctcactcaccatgtgaccagagtgaccttgaacaaattagctaactgccccgga<br>ccgcagtttctccatctgcaaaataaggatgatataagcatctacccaatgggtgttctgtgaggactgagttaatgtgcaggaagcataagaacggtat<br>ctggcacataggaaatacgcaagttagcaatttattatgataactctgcaatcttttcagccactctttaaggttcctggtcatccattctgggcacagt<br>gtgacatttacctgaacagagaggagaatggcactagaagatgagggagatttggtgcctaaaaattactacaaacaggcagggcgcagtggctcacgca<br>	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	377	63	NA	downstream:TRIM16:NM:006470
0	chr1	70946206	70946520	1000977	0	-	pAlu1-70330824;Yc1RG100; RIP_Alu_chr1_070_02	ACTTCCATGAGCTAGTGGCTGTA	GATCTCTAAACGATAAAGGCTCAC	SINE	Alu	Yc1	tttagaaaggcagcaaaaattatattttggcttttactctagatgcttagcatagttaaggcgacagttcaagcatattaagtgaaggtagttaaaatgt<br>aagaacaaccatcacaatctcttgcaacctaaatacactgtttaatgcttacatggaacaaaaccagtgtttttaattgacattttacacacacacacac<br>acacacacacacacatacacagaattttttaaaaaatcaaaggcaatcattctaaacgtactatggtagcatgttaaaaatgtaaataccaacgcataat<br>tttaaagaacacctcaaatgttctataattttatctttaaaaatttaaaggtagtatagatctctaaacgataaaggctcactt<font color="green"><u>AAGAAAACATAACCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACATAACCAT</u></font>aataccactatcacaaaaaaaattaaaaacaatgtctttattcaatcatgatttgttttttaagtctcc<br>actctcttatacagccactagctcatggaagtgcccaatcactgtgtcccaaactactggactttcagaagttttcatgttgaggaggtaacagtcagtc<br>tctcctcttctctgacaagttctccaatctgttcaaacctcagttcagtattacctgctctataaagacttccttaattctcccaaacgcagttagtcat<br>ctcttcttgagggccttcatgatacatcattcatatctctagcatgtatctaaatatttggtattataattattcatttgattgtctttgtccccaaatt<br>taggcatgcctttaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	474	143	NA	intergenic
0	chr16	876642	876957	1000978	0	-	Yc1RG123; RIP_Alu_chr16_000_01	CACACACACACACAAAATTAGCC	GTGAGTCTTGAAACGGCTTTTAC	SINE	Alu	Yc1	gaggtgcttcagaaaacagacgcgaagccaggtctgaggcctggaagcgacggggtcaggcaggtggggagagcaccaggtctgaggcctggaagcgacc<br>tcaggaagtcacccggaaggcaggtggggagaagtcttcacacctggcctgagagccacatcctcagtgtttatgagcagaggtggagccagggccaggt<br>ctcccaaaaccacctcacacacgtgcacaggtacacgtgctaccacgcacagacacacgtggacacgcacagacacacagagacacgtgtgcgcaccctc<br>cgctccccgaaggcacagccgctcctcagagaacctccctcctcggcctggtgagtcttgaaacggcttttacattttttagttt<font color="green"><u>AAAACTCACATTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>CAAAACAAAAAAAAAA</font><font color="green"><u>AAAACTCACATTTCC</u></font>ccgaccctcttattctttttgtgagacggagtctcgctctgtcgcccaggctggagtgtagtggttgat<br>tttggctccctacaacctctgcttcccgggttaagcaattctcctgcctcagcctcccaagcagctgggactacaggtgccaccaccacgcccggctaat<br>tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttactagagatggggtttccccacgttggccagggtggcctcaaactcctgacctca<br>ggtgatctacctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgctcccgggccgacatctgtttttaaaattcaccatccacaggca<br>cagtggcgaccacagc	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	563	234	NA	intergenic
0	chr9	3780633	3780942	1000979	0	+	Yc1RG132;pAlu9-3770534; RIP_Alu_chr9_003_02	TAAAACCTCTAAACCCAGCCTCT	AAAATCAGGTACTCTGCTACTTGC	SINE	Alu	Yc1	tttgcaattggagttagggtcagatagttgagggtttctttcgttctttctttctctcttttgagatggagtctctctcggtcacccaggctggagtgca<br>gtggcgcgatctcggctcactgcaagctccacctcccaggttcatgccattctcctgcctcagcctcccgggtagctgggactacaggcacccgccacca<br>tgcccagctaatttttgtatttttagtagagacggggcttcaccgggttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctc<br>ccaaagtgctgggattacagacgtgagccaccgcgcctggccgaggttttaaaacctctaaacccagcctctttcagctactat<font color="green"><u>AAAGATATAAAAAATG<br></u></font><font color="red">ATGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGATATAAAAAATG</u></font>tcttgtaccaattagattgtgttcagctgcaagtagcagagtacctgatttttaatgtcttaagttgcaattat<br>tttaaattttaatggataatctggaagtaggcattccaagtttgctttggaaattccatggtattataaaatatccagactctttagaatcttgagcttt<br>gtcaagggcagtatctctccttatgatcagaaaacatctgccagatcttcaagaaactcaatctcatatgacagcatcccaagtagaaagctggaggcag<br>ctacagagaaagtctttttcttcacatgcctctttgttattaggaaggaatgaaaactttttcccagaagccccaagaagacttttccctttatcacctt<br>agatgaattt	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	429	103	NA	intergenic
0	chr12	26511038	26511352	1000980	0	+	pAlu12-26411204;Yc1RG142; RIP_Alu_chr12_026_01	GCAGAAAAGATTTATCTGGGGTCT	ACTTTTCATGCTCAAGGCTCA	SINE	Alu	Yc1	gcactaagcctgagtgggcagtgccaaaattgagttgcagtgcacccagttgggaatgaaactaaatagctggtgtcagaccaggcacccaccctacaca<br>ccacctctggttgtggcccatgtggccatcagctgctgcccatggccagaggggaagggtgaccttggtggcaaaggtgaggaagctgcagggcggctag<br>ctcgggttgctgggtttacatttgctaactgttgctgctcagagacctataaatagtggacatttggttgaactattacaaagagagctacagaagctag<br>aatacacccagaaacctgcagctatgtacatatttaggatatgatcatgcaaggcagaaaagatttatctggggtctatggat<font color="green"><u>AAAGAATAAAGTCGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGTCCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATAAAGTCGTTC</u></font>ttgttttcccttgagccttgagcatgaaaagtgtgctgctggactgtgatcttacatacattctctct<br>ttatttcttacccattctgcctgaagagctggcaacaatttgaaatccatcatcccggctgtgttttgtggattaaactacttattctcatatgttctac<br>ccatttccttgtcaggagtgaattctgtgtattacaaataattgatgatgttgggcacatctcagaacaaaaaaaaaaggcactgatatgtttttaatat<br>tttcctggcataaattcttaactcctttcctagcccagggggccttaagtgatccagtctctgtccccctcccctcccccatctgtggctgccacctgcc<br>accctcactgactct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	411	79	NA	intron:ITPR2:NM:002223:55/57
0	chr2	81753613	81753909	1000981	0	+	Yc1RG179; RIP_Alu_chr2_081_01	ACTGCTGTGAAATAAGTGGTGCT	GCCAATGAGTGAGATGCAATAA	SINE	Alu	Yc1	taaatctctctcatttggttcaatggccaaagcctaaatcaattaagagaaatttaggtgtataagtcatcctaaggtatagctgtacttaagtcatcag<br>ttagagatgaggaaactgaggctccaaaaggttaaatgacttaattgcaatctaagcagagttggttcatggtataggcaggcctagaactcaaatctgc<br>tgattttcagttctgttttcttagaaacaatactacctcctgtgtcctgattagaaaagcataagtcacgctccaaagtgaccctctaacatgacaaagc<br>ttacaataatctgcttagactgctgtgaaataagtggtgctaaaagatccgtcaatgggatgaaataaattataacataaactttaaaaaat<font color="green"><u>AACTTGGC<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAC<br>TTGGC</u></font>ctgcttggatttttgtttaatattttaaataactacttcaaaatagccctttcaaaggagagcacttttttttcctagaaaaggaacccattaat<br>gatttcgaaaaaattaatttattgcatctcactcattggccccaaagaagactaaggagattagatttagcatttggaggagtggaatcaagaaaagaca<br>aagaatatgaaacattgttgaagaagagcaaatatttcactggtagcaaaggactgtgacagttctacctatgtgataaatagacccaatattcttattt<br>ttccccatgttttaaatttaactaaacaccaatattcttgttttccagtaatgttaatattaatatcttgaatatcttaaaaattatttcatgaatc	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	522	217	NA	intergenic
0	chr10	61365495	61365800	1000982	0	-	Yc1RG214; RIP_Alu_chr10_061_01	GAGGGAGAGCATTAGGACGATAC	TCACTCCCAATCTTTCAACTCTAAG	SINE	Alu	Yc1	tatacatccgatttgttgttactaaatttttcctttaattttacatcaaatgactttgtagcatactttcagttacattctcatatagaatgtcagagat<br>ttgcgtactgaaagtgtcgaatctttatcctcaatatccaaagtagttttagcaaaagctttacacacacacacacacacacacacatgcacagcagaaa<br>gaaatatttatgtgaaactaagacaggaacagaaaaccaaacactgcatattgtcactcataagtggaagttgaacaatgagaacacatggacacaggga<br>ggggaacatcacacactggggtctgttggggggtgtggggcaaggggagggagagcattaggacgatacctaatgcatgtggggctt<font color="green"><u>AAAACTTGGATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAACTTGGATGA</u></font>caggttgatcggtgcagcaaaccactatggcacatgtatacctatgtaacaaacctgcacgttctgcccatgtatcccagg<br>gcttaaagtaaaataacaaaatacatatgtatgtgaataaaaacctgctttttcaagtgcttcatctgtactttacttagagttgaaagattgggagtga<br>atgattgtatatagcagcccttctaaagggagtcacatttttcaccacattttagattgcagaccctcagaattatgaaatttagctttcttttcagagt<br>agtggatggaaagactataagactgagggcttaatttcaaattccaatgttaacacttattagctgtgtgttcttgaatgaattacatattctccttgcc<br>actcaa	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	554	235	NA	intergenic
0	chr21	30263767	30264103	1000983	0	+	Yc1RG231; RIP_Alu_chr21_029_02	GGGGTTAAGGAGGAGTGAGAGAT	CCAAATAAGGACAAAAGAAGTTT	SINE	Alu	Yc1	atagaggtagtaaaaagaacagtacttgccaggggttaaggaggagtgagagataagtagatggaacacagaggattttttagaacagtgaaactattgt<br>ttatgatactataattgtggatacatgtcattatacatttgtccaaagccatagaatatacaacatcaagaatgaactctaatgtaagctatggatttgg<br>ggtcataaatgtgtataaatgtaggtttgttgattgtaacaaatgtaccactctcttgtatgaggctgatagtcggggaggctatgtgtgtgtgtcaggg<br>ggtgcagagtatagatgggaacaccctctactttgtactcaattttgctgtgaacctaaaacttctctgaaagataaattttattttgaaaaaca<font color="green"><u>CTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTATTCCCAGCTACTCGGGAGGCTGAGGCAGGAAAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGAATGAACTCTAATGTAAG</font><font color="green"><u>CTATG</u></font>gatttggggtcataaatgtgtataaatgtaggtttgttgattgtaacaaatgtaccac<br>tctcttgtatgaggctgatagtcggggaggctatgtgtgtgtgtcagggggtgcagagtatagatgggaacaccctctactttgtactcaattttgctgt<br>gaacctaaaacttctctgaaagataaattttattttgaaaaacactatgatacactaaaacttcttttgtccttatttggtaatacttagaaatataatt<br>ttattaagattatatttaaaagtagagtcaaaagatatgcatgttttagtgaaatatcttctattgttattactatcatcatagttattattatttgact<br>tagaaatcctcagtagacattatgaaattagagatca	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	949	409	NA	intergenic
0	chr13	42946065	42946378	1000984	0	-	pAlu13-41882603;Yc1RG283; RIP_Alu_chr13_041_02	TCCCCCTGTTCTATCCTCTACTT	AACCCAAAAGATAATGGTGTCTG	SINE	Alu	Yc1	ctctatttatgtggttacatctatcaatatttagcggttagaaattaaaactaaaagattctttaatatgtagtaacttattttaaaataagaataagcc<br>aggggtggtggctcacacctgcaatcccagcactttgggaagccgaggcaagtggatcacttgaggtcaggagttcgagaccagcatggtcaacatggtg<br>aaacgccatgtgtactaaaaacacacaaaaaattagccgggtatgatctcagctactcaggaggctgaggcaggaggatcacttgaacccaggaggtgga<br>ggttgcagtgagccaagatggcaccactgcactccaacctgggcaacagagcaagattacatctcaaaaaaataaaacaaaat<font color="green"><u>AAGAATAAACCCATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAAACCCATTGC</u></font>ctgttaacataaataacatattcttataaaaaaaagaactatatcttttaaaacaaaaaaaaacagtga<br>gactgatgtggaagctcaataaattactctcatagaagtagaggatagaacagggggatcgagaggctggggaggaaggagggagaggagatgacagatt<br>ggttagtggatacaggatcatggctggataggagaaatgagctctagtgttctttagcgctgtaaggtgactagttaacaataatttgttctatgtgttc<br>aaatagctagaatgtttcagcacaaagaaatgatcaatgtttgaggtgatggatatgctaattactttgatttgatcattacacatggcataaaggtatt<br>gaaatatcacactg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	963	632	NA	intergenic
0	chr6	7717384	7717702	1000985	0	+	Yc1RG328;pAlu6-7707282; RIP_Alu_chr6_007_01	GTGGCACAACATTTTCAAGAACT	TTCTGCCCTTTAAATTCTTCCTC	SINE	Alu	Yc1	tgaaaactccacattttttgaaaaacacacacgtacatgttcaggaagctgagcaaatcctgaacgaaataaacccaaagaaatccacgtgaagacacat<br>cataattaaacttctgggaactaaaagtaaagaagtcttgaaagcagccagggagaaacaattcgttacttcctagggaaaaacaattagaatgatggta<br>gatttctcatctgaaaccatggcggccaaacaaagtggcacaacattttcaagaactgaaagaaaagaactgtcaactgcaaattctatatccagtgaag<br>ctatccttcaagaatgaaggagaaataagctaattcttagacaaaagaaaactaaaagactttgttgctggtgtacctaccctt<font color="green"><u>AAAGAATGGCTAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATGGCTAAAGA</u></font>gaattcttcatccagaaagaaaatgataaaagaaagactcttggagcatcaggacggaaggagga<br>agaatttaaagggcagaaatattggtacatacaatcgaatatgaatttcctcttgagttttagaaatcatatttaggccaggcatgatggctcatgtctg<br>taatcccagtactttaggaagccaagtttgggcaaatcacctgagcccaggagtttgaaaccagcctgggcaacatggcaaaaccccatctctacaacaa<br>atacaaaaattagccaggtgtggtggtgcatgcctatagtctcagctactagggaggctgaggtgggaggatagcttgagcctgggaggtcgaggctgca<br>gtgagccatgagcatgcca	UCSC	<UL><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	584	249	NA	intergenic
0	chr10	32705738	32706064	1000986	0	+	pAlu10-32855876;Yc1RG344; RIP_Alu_chr10_032_01	GGGACTAAATGCCCACTTACTTT	CTGCAGAAGCATTGACTAAACCT	SINE	Alu	Yc1	ctccataaatgctagattaactttgtttttaattttcttctcaggattcagtatagttagaaagaaaagtgaaaataatgtagaaagggtaagaagagta<br>tttcttaccttaatttgccaaactttcattataataaacctcttattttccagtattagacaattattgccctctgctacttatcaactgtgaactctta<br>agcaacggatttgtcctttttatacctaaagtttttgattttcaaaatcaggattagaatatctactttcaggtttatgatgagaatttactacgataat<br>ctatgtaaaaggacctcacacagtgatgagcctatattgggactaaatgcccacttactttattttttcttccaactacgtacttaaaa<font color="green"><u>ATATTCTATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAATATATATATATATATAT</font><font color="green"><u>ATATTCTATTC</u></font>aacatatttttatttttcaggtttagtcaatgcttctgcagatgcttttcggaaagtctggt<br>tactggtgaacttacttttttcattaccttagatattttttaaaattacggtaaaatatgcaaacatgaaatttactatcttaactatttgtaagtgtac<br>agttcaatattattaagtatattcacatcgttgtgcaaccaatttgcagaactttttcatcttgcaaaatcgaggctctatacccattaaataagtcccc<br>attcctccctaccctcagctttattttctctttctatgaaattgattactctagatccttatgtaagcagaatcatatagtatttgtctttttgtgactg<br>gcttatttcacttggtgtaatgtcctc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr2	207890667	207890982	1000987	0	+	Yc1NBC31; RIP_Alu_chr2_207_01	TTCTGTAAAAGCCTGTTAGGTCCA	CAGCATTTCACTGTCAGCATTGG	SINE	Alu	Yc1	agagattcacctcacctgtaaagaacacacacaaactgaaagcgaagggatggaaaagatagtacacacaaatggaaactaaaagtgagcaaaagtagcc<br>atacttttatcagataaaatagacttgaaattataaaacccccaaagagaccaagaaaatcattacataatgacaaaggaatcaactcaggaagagaata<br>taacaattataaatatatatgcatccaacaccagcacacacagatacataaaacaaatattattagagctaaagggagagatagaccttaaaaaaaataa<br>ggtggaatttcaactctcagcatttcactgtcagcattggacagatcgtctacacagaaaatcaacaaagaaactttggactt<font color="green"><u>AAACAGCACTATAGTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAACAAAAA<br>CAACAACAACAAAAAA</font><font color="green"><u>AAACAGCACTATAGTCC</u></font>aagtggacctaacaggcttttacagaatattttatacaatagtttcagaatgcacattcttctcact<br>ggtacatgaaacactaagatagaccatatgttaggccataaaatcagtctcaacaaatttttagaaattgaaatcatatcatgcatcttttcaggtcaca<br>atggaatgaaaccagaagtgaataacagaaggaactttggaaactgtaccaccagatgtaaattaaacaacctactcctgaacagccaatgaagaaatta<br>aaggtcaatgaagaaattaaagatactacaaaatgtattgaaacaagtgaaaatagaaatacaacataccaaaacctatgaaatacagcaaaagcagtac<br>tgagagggaagtttat	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Garber, R .K., D. J. Hedges, S. W. Herke, N. W. Hazard and M. A. Batzer. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res 2005;110(1-4):537-42.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	443	110	NA	intergenic
0	chr12	58458224	58458225	1000988	0	+	Ya5HS4.32; RIP_Alu_chr12_056_01	GTTTATTGGGCTAACCTGGG	TGACCAGCTAACTTCTACTTTAACC	SINE	Alu	Ya5	gggcccaaatttcccttcagaatctccaccacggtactcatctatattttcagtccttaattaaatctggtttctgctgtgcttttcattcaccatttag<br>taaaaatgaaaacctttcttaataaatttcagagatgggagattaaattacttacataaatgctaatatggcaatggaattttttactaaattttttctt<br>gtaaatacatgatatggcatcaatataaatgagtatgaatgagtttattgggctaacctgggtacctatctgcatttataataccatttttatgagcaaa<br>tgcattgtatcttccagcaaacagacttgcaagctgatttctggaaatctagttttcgaaagttgaacactgtgtaattcaat<font color="green"><u>AAAAATATTCTAATGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>ATATTCTAATGAG</u></font>aataaaagctagacagaggcataataatgcttttcctaatttttctacctttcttttagttacctttttagttacatgaatagtcta<br>cagcaaaatagctaagtgaggttaaagtagaagttagctggtcattccggcataagtgaaaatgtagaacttagagtgtacctttgcttaaagtcagttt<br>tctttcaggaattcattttaatattgtgatagtagagaccatgcgaaaaaatatgaaaaaactcaaacaagaaaataatctttaaagaaaatttgagaac<br>cttcatttccaaacttttataagtagtttttaccaaagacatgctcattaagctttgccaggccactgtcagtagtggatacatgattaaatccac	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr14	63887489	63887802	1000989	0	+	Ya5NBC208;Ya5ac2368; RIP_Alu_chr14_062_01	AATACCTTGTACATCTTCACCCCTA	TCTCTCTGCTGCACAGTTTGTT	SINE	Alu	Ya5	caatctgggatatacctatgaaaagcacaaatagttttacaagtttcttagattgcagacaatatgtctgggaccttaaaaaaaaaatcaaacatctaag<br>atagtaaatcaattaccgtgttttaactaatttacccagtcttagcattggaggcaggaatacatatgcataacacgcctgagtaagagctgagaaaaca<br>gagcccccaaaagctctctacgtaacaacgggaaatagcacacgtgtgtacttgcagaaactttgagttgtcaaagcaggacagacagacttgcaaattt<br>gtgtcagaaattctgaagtaggggggaaaaactcttagaatatctctaggccttctctctctgctgcacagtttgtttgctcttc<font color="green"><u>AAAAAGTCAACCTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTCAACCTGA</u></font>accatgaatacatttctacgaaaatgcagcagcttctgcctaggggtgaagatgtacaaggtattattcat<br>tttcttccaccccttcccccttgctatttgtcgagcaacctaaggatattctgactcaatggaagggtgactttggggttcaacatgtacaaatttcctt<br>gctctattcttttgagaaattttggccttcagagaaggcagcacaaggaaggaacgagctggaaaattaccagtatgtattatacaagttaatacaatac<br>agatggctctaatgctggaaacagagatgcagtgatgcccctgatccatcctggcacataagtgtgattggaaaacatggccttctcagtgcaagagaac<br>agaattggccttta	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	50	441	115	NA	intron:PPP2R5E:NM:006246:4/14
0	chr16	19230438	19230764	1000990	0	+	Yb9NBC30;Yb8NBC243; RIP_Alu_chr16_019_02	GAACCCCATCCATTCTCTTACA	GTGGCAAAATATTGGCGACT	SINE	Alu	Yb8	gtgaagactgccaggattgggcagagcccctgggatcaaccactgggcagcttgccttggttcctgtaggcgtctctagaatccattcattctgcccaca<br>ctggccttctctttgttcctttgaacacactgactgagtgatgccgggtttattcctccctccctccatcccagaccttgcacatgttgttccctctgcc<br>ccatgagtccctatccctctttcctccctcattcctcttcaaacctcgcctctcagagaaaccctaccccatccaccgactgaaagggcagctcccacgc<br>gaaccccatccattctcttacactgcctaatttgtcttgttttcctttttcatatttattttatgtttttaatgggaatatttcccacat<font color="green"><u>AAAATAATAA<br></u></font><font color="red">AACAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAA<br>CAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATAATAA</u></font>taataataataataaaacaaacacccatgtgtccatctcccagatgtcgtaagtcgccaatat<br>tttgccacatttgcttacttcaaatcactccctttcaatcaactgcattgaggcggaacttactgtttgttgatttttggcaaatgcacacgtaactgct<br>accacaatcaagatatagcatattgctatcacccaagaaatgttcttcctttctctcactctgctatatttttcttcctaatacttagcattacctgaaa<br>tcatctcatttatgtattttttaaaatctgtgtgctatccatcccccccacaggagtgtatgttccataaagtcagggacggttctcactggtgtatcct<br>tagtcctggtacatagtaaactgtttt	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	508	156	NA	intron:SYT17:NM:016524:5/8
0	chr1	217024868	217024869	1000991	0	+	Ya5HS2.43; RIP_Alu_chr1_213_01	ACTCCCCACCAGGTAATGGT	AGGGCCTTCATCCAGTTTGT	SINE	Alu	Ya5	ttttctgaacccttagaatcctagcaggactggaagaaaggttaaagatctatgactaattagaaagataattttttgtaaagaaagaataactacactt<br>ctcagagtgcccactcattactaaaagctgtgtgctttgagtcagcagacctgaaaccaacaagatgcatgtgctgcttttcttgtttcggcatctaagt<br>tacttttgaaacacagtagtgtaggagagaactacttgttatggactaaatgtgtgtattcctccaaaattcacaagttgaaatcctccccactccccac<br>caggtaatggtattagcaggtgaggcctttgggtggtaattaggtcatgagagtggagccctcatggatgagattagtgcccttat<font color="green"><u>AAAAAGAGGCCAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGAGGCCAGA</u></font>gagcgctcttgccctctttccactgtatgaggatacagggagaagttgacagtctacaaactggatgaaggccctcgccagaacctga<br>tcatgctgacaccctgatctcagactttcagcctccagaactgtaagaaattaaatttctgttgtttataagccacacagtctatggtgcttcattacag<br>caggccgaactaagacactactgttggctgctaatttgcagaaatgtgcatctctcattgacccggctaaggatccttttattttttcctgaacattata<br>gaaataaacaagaccaatcaaacaaatattaggaaactggtatttaggaagagtagaaaaatcacccaagtggggccacactgatatcaactttacaa	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	171261236	171261541	1000992	0	+	Ya5NBC237;Ya5NBC220;Ya5NBC159; RIP_Alu_chr1_167_01	GAGGGTCTTTCCTAGGTTTTGTTT	ATGTCAGGTGTCCCTTATGGAGTAT	SINE	Alu	Ya5	tttccaccaggcctgaggactgggggtggtaggcacaatggaaatgttgaaatatgggccaaatttcacaaacatcttgaataacctggccggtaaagtg<br>agctcccctgtcactgtgaagttcacaggggactccccacagtgggataattttttgtagaagaattttccaactgccatggctgttgcttgcctgcagg<br>gaaaagcttcaacccaacgggaaaacatgcagaccattacaaaaacatacttaacaaccttgagatgatggcagccagataaaatcaagctgccatacct<br>caaagggtccagccggaaggaaaaaatgaccgtgggccccatggagggtctttcctaggttttgtttgggacaaatagcacatt<font color="green"><u>AAGAGTAACCTTTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTAACCTTTTTG</u></font>tgccactgtgaaggatggtttccagtaatattgtttacaccagggtattattttatctagattccaatgggttagatt<br>atgaacatactccataagggacacctgacatcccattggaataatgggtttattattaggtccacatcatatttcactttcaagagacaagtacctccct<br>gcctgtttccaagtagatttctcttctgtaggagctatgctctgggtttctttcaacatgtttttaagtatttggggttttatggccatttcccagattg<br>ggactggtggctcggatgctgctcttttagctgtagcttcagccagttggttaccctaactttctatggtgtctaattttgaatgacctgggattttcat<br>agttgc	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	410	88	NA	intergenic
0	chr20	24269611	24269829	1000993	0	-	Ya5NBC335; RIP_Alu_chr20_024_01	TGGGTACTTTGGCCTTAGAGAA	TTCACAGCATTAGAGAGAGTTGATG	SINE	Alu	Ya5	taagttcctttaaaagacattccaggcatccagctagccctgagaagtaaacgagtgacttactaagcaagaaggtaatcatagctaaaaaccatagcca<br>aggaagtcagtcatgagatgttgggtttcctaaaatttcatgctttgtgtttatttcataaaccgtagtcaaaatttaggggcctatgatctaaatgaaa<br>gtgaaaacctgaaccaaataaagtgactgattctttgtatctgagcatactgaatcatgcctataaggtaagtttagaaagtaaatactgtaagagatgt<br>ggagagcactccaaataaataaataaataaacaaaactaaaaccttgtttactgggtactttggccttagagaaaaagatgactat<font color="green"><u>GAAAATACAGGATA<br></u></font><font color="red">CCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAGGCT<br>GAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATACAGGATA</u></font>aaaatgtcattcacaattattcatccagaaaagatttaattccaatctaaactatcatcaactctct<br>ctaatgctgtgaaacagagtcaataactgcagtttttctttgttttttttttttgtttttttttcaacttttattttaagttcaggggtatatgtgcagt<br>atgtgcaggcttgttcataggtaaatgtgtgccgtggtggtttgctgcacagatcatcccatcaactaaatattaagcatagcagccattagctattctt<br>cttgatgctctccctcgctcttcacacaacaggcctcagtgtgtgttgttccccacactgtgtccatgcgttctcatcattcagctcctacctataagtg<br>aaaacacgtggtgtttggt	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr2	189853958	189853959	1000994	0	+	Yb8COL3A1; RIP_Alu_chr2_189_02	ACCTGCAGCACCAGGAGGTCCTGGAGGGCC	GAGTCCTTTAGAAGGATATGCTCTG	SINE	Alu	Yb8	taataaaggaattccctcatcattagccatcaaaatagtccacttcccagagctgataaaaattctgtatatattaaatatagatttcatttttctgtaa<br>acactcagttcactcatatctaatctactgataaatatagttatatatttacatatgtaaatatacatatacatatatcttagacagtagaaataaacat<br>aatcttagagagtcctttagaaggatatgctctgtaaataagcaagtaaaatagtttaaatacaacatttcatgacatttagaaatacctttatatttag<br>atatatttaatattcctaaacgtgtagaaatgcatttggatttataaatacacatacgtaatatatgatgcttttaatttttattaacagtaagttgata<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>taatagaggtataatattaactcagtaagtatcattttcattatcagaaacattaaaagtattttctaaaaggaggttcc<br>ttccaggaatacatacactgtgtaataataaattgtaacagaaaaatttacaaatctattcattttttatttccttattttcagggccctccaggacctc<br>ctggtgctataggtccatctggtcctgctggaaaagatgtaagtttttaaaacttaaataagaatacagcaaaatttaacttggtgtattctaaacagta<br>tatgctttatgtcagaatcccagaagaaaaaaaaatgttattcaaaatattgttgtcttaacaacattttagttaatactaatttttgagtagctataca<br>gtatttgcgtttctatatat	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	precise insertion position unknown TSD unavailable	NA	NA	NA	NA	intron:COL3A1:NM:000090:7/51
0	chr3	174615622	174615934	1000995	0	+	Ya5HS4.75; RIP_Alu_chr3_176_01	CAGCATTACATACAATAGTTAGGAGC	GTGATATTTGTCTTTCTGTACCTGG	SINE	Alu	Ya5	ttgatcattagagaggtgaaaacaaacatcttgaaatcaaaactagagatataatttcacctcagttaaaatggattatatccaaaagacaggcaataac<br>aaatgctggcaaggatgtggagaaacaggaacccttgtacattgttggtgggaatataaattagtacaatcactatggagaacagtttggaggttcctca<br>gaaaactagaaatatagttaccgtatgatctggcagtctcactgctgggtatatacccaaaataaaggaaatcagtgtatgaaagatatatctgcactcc<br>tataattgtcacagcattacatacaatagttaggagcaacctaagtgtccatcaacagatgattggataaagaaaatgtggagtcctattcagccat<font color="green"><u>AAA<br>AAAAGAATGAGATC</u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAT<br>CCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGG<br>CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAAAAAGAATGAGATC</u></font>ttatcatttgcaataacatgggcagaattggagattattatgttaagtgaaataat<br>ccaggtacagaaagacaaatatcacatgttctcacttctttgtgtgacctaaaaatcataataattgtactcatgatatagagagtagaaggttggttac<br>cagagattgggaagggtagaggggggttaggaggagggtagatagataatgcgataataatagataagtaataataaataaattaataataaatagaatg<br>aataagactgactatttgatagcacaacagggtgactatagtcaataataacttaatggtatgttttaaaataatgtgaagaatataattcgattgtttg<br>taactcaaaggataaatgcttgaggag	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:NAALADL2:NM:207015:1/14
0	chr4	144573302	144573614	1000996	0	-	Yb9NBC10; RIP_Alu_chr4_144_01	GTTTTCCTGGTGTGCCCTAAATA	TTTACCTAACTCACAAGACCCAAAG	SINE	Alu	Yb9	acctcaggagttcaagactagcctggccaacatggcaaaaccccatctctataaaaaatacaaaaattagctgggcatggaggcatgcaactgtaatccc<br>agctactcagaggctgaggcaggagaatggtttaagcccaagaggtggaggtggcagtgagctgagatcgcactgtactccagcctgagcaacagagcca<br>gactctgtctgaagaaaacagaaagaggaaaagcaggaaagcatgcagtcttcacctcaatttacctaactcacaagacccaaagggactgaatgggatt<br>ttttttctatatttcatttcatttgccactttcatttctattgctcgttaaggcttttaaaactctttatgtattactcttttttt<font color="green"><u>AAGAAAGGAAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGGAAAAAG</u></font>accatttgaatgaatagttatttttaaatttatatatttagggcacaccaggaaaaccaaatgaacagggaag<br>aaactggcagcgtgtaacattaagcacaaaatggtaagatgttatacacagctagggacttgtgcagaaatacaatacacagaaaaatcttttgaactat<br>tagttcttcagatattacaaaaaatgcagctccaagaatgagtccattgaaaagaaaataatagtaatgctgaattaaagtacactattccattcagcac<br>ataactgattattttatatgaaagtgacctatgtcatctttacttccttctctccttccatctgttaagaagtataaatgacttaagggtgggctttatt<br>attttctcacagg	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	524	197	NA	intron:FREM3:NM:001168235:2/8
0	chr5	94994221	94994222	1000997	0	-	Ya5NBC27;1104685725664; RIP_Alu_chr5_095_02	CTGAATACAGGTATCACTGAACAGAAC;TTCTGAATTGCTCTGCTTTCTT	ACAGTGTAAAGTCTAACCTACCAGAGGAT;CCAGAGGATGGATTTTCTTGTT	SINE	Alu	Ya5	tgttaatgctgtgctgaagaaggtaaagaacatcttccaggaagaagaatccataaggcaaaacagagaggagagtgaaaattgtagaaaagccttttct<br>gagcctgtgctttcggagcctatgtttgctgaaggtgaaatcaaagcaaaaccttataggtcattgccggagaagccagacatttcagattaccccaagc<br>ttcttgctaataagcagagtaataacatccaagttttacattctgtgtttgaccaatcagctgaaatgaacgagcaaatctgaatacaggtatcactgaa<br>cagaacttaagagttatctatttaatggcacatttcatctgacaaaactcagagtctagtttacatattctgaattgctctgctttctt<font color="green"><u>AAAAAAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA<br>GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAGAG</u></font>aagggggctactattaaaatgtcattttctagtatttacatgatagagtaaataaaatgaatattgatgtggaa<br>tatatgtactgactacatacttttaatgaacaagaaaatccatcctctggtaggttagactttacactgtggtttataatataagcatatttataataca<br>ttaatgtttttattaaagacttgttttgagtgtctaattctttacttgggaggaaaaaaagccccatcaagatggtgcatatcaaaataaaagaatattt<br>attttttatatgcagactggagagtttgagtctgcctattattattttgtaaatcacttgcaaagttatgaaggatttgcaattcacagatgtcataaat<br>ttataaaacaaaata	Other;Venter	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA;NA	55;60	591;483	265;158	NA;NA	exon:3UTR:SPATA9:NM_031952
0	chr5	143353651	143353809	1000998	0	+	Yb8NBC547;pAlu5-143336706; RIP_Alu_chr5_143_01	GCCCATGCTCAGTCTAAACC	GATTGGAGCCCTTGTCTACG	SINE	Alu	Yb8	ctcctgtctcagccttccaagtagctgggactataggcacctgccactacgcctggctaattttttgtatttttattagagacgggggtttcaccacgtt<br>agccaggatggtcttgatttcctgacctcctgatccacccgcctctgcctcccaaagtgctgggattacaggcatgagccaccgcgcccagccaactgcc<br>agtctctttcaacttgataggtgacaaagtttggaagcaactttcttaattacatagactttacatatcttttgtaaaaatgctagacatgctgtgcttc<br>tactctgacagtcagtaaaacagtgctgattggagcccttgtctacgacaaaaaaataaatgttcctgcttcttcttagcaaat<font color="green"><u>AGAATCATGGCCTGGA<br></u></font><font color="red">CAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTC<br>TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAA</font><font color="green"><u>AGAATCATGGCCTGGA</u></font>aatcgagaaatttgcatttttagct<br>tctgctgtctcgccaaccatttgtgagacacagagtgaaccacagttgctctgggtcacagatttggcaaaaataaactgagaggtttagcctggatagt<br>ctcacggcagcacacatggtggtttagactgagcatgggctccgaagtcagacatagttggattctaatcccactcactctaccacatactagttacatt<br>accttggacaataaccatctatcttcaactttcatttcttcaccagtaaaatgaaaatgacatctattttacagcatttttgtatggattaaatgagata<br>atgtacataaaagcacttagcacagttcttggcaaattgtaagaggtcaatctagttaa	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	413	238	NA	intergenic
0	chr7	80801700	80802025	1000999	0	+	pAlu7-80399849;Yb9NBC29;Yb8NBC207; RIP_Alu_chr7_080_02	GTAATATGAGGTGATGGGGGTTACT	GGTGAAAGAAGAACCCCTAAGTTAT	SINE	Alu	Yb8	aagtctggtaaaatcaacagaggcactcagaatgtctccaaaatcatttccatgatgccagaaactttaaatgctacagaaacaagctacagcgatacat<br>ttaaatgttcttctttgtagggcttgagctgtatctaaacttaagttagagctcaaccaacatagaatctagttcagtaatattctacaacgtgagataa<br>ccatattgatatttgatctaaaatgagattgcagaggaaacacattttaatacctgaggtgtgtgcttaatcttcttgatgtacattaaaagctcagtat<br>gtgagagtaatatgaggtgatgggggttactcttaaagagattactaataatgtttatttggaaaaagatgaagattttagaggctattt<font color="green"><u>AAGAAACTGG<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACTGG</u></font>ttctgggaaaaccagccataacttaggggttcttctttcacccaatcccattggaattctgctt<br>tgctatagaaacatgctcaaaccaaggcaagcagcacacattacatgaacaaacaacacaacaatgaaaagcagatccttgagaccctcccaagaagacc<br>aagagctctctctttaaaactttgtaaaatacctaggttctctagtcttcctgtgtgttatttcctaaccaattgcactatcaattcaaaaatggaacaa<br>aggatattctatgtatcagaaccttttttcctatacattaagaagaacttttcccacatgaataggtaatcacaatcttaagccagaggatgaaacctat<br>gaattccttgtatcatatatatttta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	474	138	NA	intergenic
0	chr7	127766429	127766728	1001000	0	-	Yc1RG68;pAlu7-127306922; RIP_Alu_chr7_127_03	ATGGTGTCCACAAGAAACTGAG	GGAAGGCTCCATTATAGGTCTTG	SINE	Alu	Yc1	tggtctctcaaagtgttgcaatcatagttgtgagccactatgcctggccccaacttttaaattattacataatactcattttggataaacttccagttta<br>tacagaaaagagatgggaaagtcttaatctaattttctgataataggatcactgtgatcctgaaagtcgacatggacagcacaagagggaaaactacagc<br>cacttccacttatacacacaaatacagaattactaatcaatcaatgaccaagtagggttgttccagaagaatatgcaagaaaagagttgaataaatagaa<br>acgataccatgttcatggatgggaaggctccattataggtcttgtacattttttattaggttctttttcgagtttatattgctgtt<font color="green"><u>AAGATGCTGTGCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGATGCTGTGCCC</u></font>agtatatattgggtccaagaagataaaagccaaatactgacaaaagtagagaaaaaagaaagaagctcagtttcttgtggacacca<br>tggggtctctgcattagctctggtctgcatccctttggatttacctgttatgcaaaatttaaaatcctattatattaagtatctgtttgcctctgttact<br>aaaagctgatacaaagcccaataaaactttcaataagatttttcatgacacttgacacacaaattctgaaattcttactgaagaataacacaccgacatt<br>ccaggaagtgaaagagggaaattgggaaaaggaaggggcagtgcctatagcagaaaaactttcccagaaattcccccatagacttcttgctttttctagg<br>	UCSC	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr9	89946027	89946028	1001001	0	+	Ya5HS4.65; RIP_Alu_chr9_087_01	TGAAGCCAATGGAAAGAGAG	ACAGGAGCATCTAAACCTTGG	SINE	Alu	Ya5	agaaaccaaaaacatacaacattggctttaagactgggtggggcaggcgggagccagaaaggtctcaaaaaaccactaaaggagactggaaggagagtga<br>ggaaattgttattggaggctgaagaaaaggcaactcatacaatatattggtagaacatttaacaacactgtcaaactatgaagccaatggaaagagagat<br>gaaccaaaaaaaaggactgctcagattgagagcagaatttagaaaacacgttgagaactcaggactcaacaaaagattctcaaaggaagaaatgtcctta<br>aggcaagtattaaacccaggttgctgcaagtaaaatatagtgtcagagaaaatgttcaaatcaaaagtgcaggcgtaagacctt<font color="green"><u>AGAAAGATTTGAGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAAGATTTGAGACA</u></font>gtgcctcaataaccttcttcatttccaagacagaagggcttccaagaatcttaagggatttgttctatagcatttttaat<br>ctcagtccaaggtttagatgctcctgtctcaaggagaattctgagtgtcgcatttatctaagggattggaattataatttgatgcacaggaaacctataa<br>ggtttttaaaggaattatattaacttggtctaaaagatacagagatggttcaaaatgaaaagaggtctctgggtccttaacctcttataaagagaaagga<br>gattgagactgtctcctactcagctgcaagcatagataatttcttatagaaaagaacaggtcactagagagctgagtcaagaaccacagagaaccatgaa<br>agag	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr9	119477078	119477397	1001002	0	+	Ya5NBC239; RIP_Alu_chr9_116_01	CAGCTGAGAACTGTCACAAATAGAA	ATCAATGACTGACTTGTGCTGAGT	SINE	Alu	Ya5	actaacagtaataataatcattattggcttaattatgtctcatgataataatgaatgatgatcataatagcatttcctcagcatttgttatatgccaggt<br>gcagcagtaatcactttacaaacatcaattcatttaaatctcataacaatactgcaagataagcataattatacccatgttaaagataagagaattgagt<br>cccaggaacctaaaagacctgacctaagtcacacatctagagaatggaacagatgacacatagcttcttatgtatgttgccatttgttgaaacttacacc<br>tgtcgggaggagaatgcatcaatgactgacttgtgctgagttcctgctatgagccacgtaatcacatgatctcacatcatctgcat<font color="green"><u>AAGAATCATGTGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCATGTGAG</u></font>atctaaatgtttttccagctattcccctggtatctcccaaagtggccagttgttttcacttaattt<br>aaggcattggagattcagtcttttctatttgtgacagttctcagctgtggacagaggcaatggaagtgtctctaactacttgggagactgaggcccagtg<br>acattcaaaggtctaacaaagaagccaatagcattccctaggagcactgaggggatgcaggtactatattgctcctaactggtccaagagacttcgccat<br>tcctaaaggtgccaggccttcctacaaatctagctttgcattgttgtctccttgcgtggagtctccttcctccccaccttcccagttggcaaatgcctac<br>tcacccttaggttcctgttt	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	531	198	NA	intron:ASTN2:NM:198186:16/23
0	chr5	91480788	91481130	1001003	0	+	Ya5-MLS04; RIP_Alu_chr5_091_01	GCCACATTGTAAGCAAGTAGCAC	CCTGTATATTAAGTGTGGGGTACTCA	SINE	Alu	Ya5	aagaattttgatcaaatgtactgaaatatgttggtctgaacaaggtaaaacctatttctttattgcaagacttctcagagactggataaacataaaatca<br>taagggcttagattgtttataccttagttacccctgtatattaagtgtggggtactcaataaatattgatttaataaatatcctaatgcaagctgtgatt<br>ctctagaatgagagtgaaaatatgctatagttcccaaatatatttggcccaggtccttttttttccccacagagcatcttgctgtacagaacacacgtta<br>ggaaatgctaatgtttggattattcctggaagagactattactaggaatccctttcccaaaaactttctctagagcaaatcgttaaaag<font color="green"><u>TAAAGTCTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAATAA</font><font color="green"><u>TAAAGTCTATT</u></font>atcacaaaaattcaataagcactgacagaatgcctacagttccagt<br>tattgtggaaagtacaaaatattgggaatattaacatggttacaattaagtccttgcgtccagattttgccacagtgtgttgaaataatttgtgtttgac<br>tggcttattataatgtacactacagatataagtggtagttcaaagcaacaataaatagggaagaaggcaggggacacagtaaatagcatttgtaatacac<br>ctactctgagtcatgcactgtatatatatatatatatataaatttcacccacttcataggcctatgagtttagtaagcatcatgacctgctagcacagaa<br>atttagaggcaatatagtatattgcataagaacatggagtctg	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr4	177869333	177869634	1001004	0	+	pAlu4-178453682;Ya5-MLS05; RIP_Alu_chr4_178_03	TAACTGGCATACGGATTCTTTCTC	ACTACTTATACACACAAGAGAGCACATG	SINE	Alu	Ya5	ccttttttgtcccctttagtggcaacaatggttatttttgtttcctttaccctcaacaaggttattacttcatatgagctggggtaactgtaactctaaa<br>gtgtaatgtatgttataccagtacttacatttggcaaaatagaatccttaggaacataattcactctcaattaaactttcaacatataccacgaaactaa<br>gaagtcaaataaaattacgcatcttagcacctgcttagatgtttgctagaaaaatttagtttagatttgggagacaggtaaagtcagtcttgtctttaat<br>aatgaaatactcaatttgaaactggagatttagctcctggtatttgcagcttactatatggtaactggcatacggattctttctct<font color="green"><u>AAAGAACAGGATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAGAACAGGATTA</u></font>acagtgaaggtctctgataattttgtggatagcaagtctcctcttattgtcatcatgttactaaagtaaccaagaaggatcagc<br>gaacatagtcttcctaagggtagaaaaggagttctatttttttatcaaaagaaacttggtacatctttaatgattgaaatatttattgattccaagaaac<br>tataaatgctcatttaaagctcaccgcaaatagttatttctaccccacatgtgctctcttgtgtgtataagtagtcacacacacaggcacgcagacacac<br>tcatggattttaactattagaatacaatgcctacaggactttctggtcagaccaaagtatgaaatgataaggatgtttctgaaaatttgaaattttacta<br>tt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr6	52805039	52805040	1001005	0	+	Ya5-MLS10; RIP_Alu_chr6_052_01	GTGCTTAGACCTCAGTTTATGGAGT	GCTATTTCTTTGCTCACACCCTTAC	SINE	Alu	Ya5	catgctggtgctgtgactggatcatcatgtttgtcatcacgcaacctgctgccattagagcagcactatcttcctggcaagttcaacatagtgggtatcg<br>ggggtggcttcctctgactcccaggctgcaggaacttcttaattgtagggatgttgctgattcttattttaaatgcctgaaataagaaagagtaaaatca<br>gggcctcaatagcagtcacaacctttaagaaaaatctcaactttgtcatgaatgaagggtgcttagacctcagtttatggagtacagtgtactgaatctg<br>cttaatccctcagcaagtgtttgctgggtatttctgggatggataataatacaactgctgacatgtttagcatgagttatattatctatt<font color="green"><u>AAAAAGTCAC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGTCAC</u></font>aatcaggcagtgcatacccctaaaatattcatattcttttttttttttttgagatggagtctcactctgttgcccaggctagcatgcag<br>tggcacaatctcagctcactgcaacttccacctcctgagttcaagcaattctcccacctcagccttccaagtagctgggattacaggcatgcatcaccac<br>acctggctaatttttgtatttttagtagagacagggtctcaccatgttagccaagctagtcttgaactcctgacctctagtgatccacctgcctcagcct<br>cccaaaatgctaggattacaggcacgagccaccacatctggtcacattcatattcttgacctatcaattcttgttttaggaattattataaaggaataag<br>t	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr15	52525193	52525506	1001006	0	+	Ya5-MLS11; RIP_Alu_chr15_050_01	AACAGGACTTACAATGAGAGTATAGCTC	AGACTTTGTGTTTGCGACTCTTG	SINE	Alu	Ya5	gctttaaggcaaactagattccatacattctttgccgttcttccttttgtacatcatcaaagagctgcttggtgaggttgtccattttttctgtaaaaag<br>agaatgctttttgagatatgtctgccaaatcaatgccttgattgtttcatgttatgtttaagaaagtgagaatgtcaggacaatcatgtgatgtttatta<br>ttaacaggacttacaatgagagtatagctcattttttataaacaagaaataaagatgagggggtttcaaaataataattctcacaaatttgtcagattgg<br>aattatcaataaatagtttcatttatagtacttttgttggtctgttatttattaaagtagatattggctttgagacaatgaatattatt<font color="green"><u>AAAAATAAATA<br></u></font><font color="red">GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AATTAAAAAAAAAA</font><font color="green"><u>AAAAATAAATA</u></font>aataaatagaaaccctttgggaagaaaatgatccatttgtgacaaggtttctcggtcttggcactattgctactt<br>tgggctggataattctttgctgtggagaggggctgtcccacgcattgcaggattctgagcagcaaccctggcttctaccctctagaagccagtagcacct<br>ctgctccagttgtgacaacccaaattgtttccagacattggcaaatgtctggggggtgaggtggcagcaaagctgagaaccactcatctgtgataaccaa<br>gaaaataatcaagtgtctgtctctatctgggaaagaggaagtacaaaaaaggcagctgttaacactgaaatacaagagtcgcaaacacaaagtctgcagg<br>ccgaagggcaggac	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:MYO5C:NM:018728:23/41
0	chr7	47832660	47832661	1001007	0	+	Ya5-MLS14; RIP_Alu_chr7_047_01	GGCCAGAGCATATCTTATCAGC	CAGTCATATGTAATCACGGTACTGTAC	SINE	Alu	Ya5	gactctcttctgtccttgcctcccctgtgttgttggatgttttttccagaagggggagttgtaggctgtcggacaaaccattaatcttcatcagaagttc<br>gtctaacagatttgcaaattcatccaagtagtaattctgaagggaagaaaattagattagtaaatgcattcaagaatctcattatccccctttcctcatt<br>atgtgaagcatttaggggtatcatctgtagacagtattgggctatgttaggaaacatactgactctgcctgcagttagaagacctgggtgctgggcctac<br>tcttacatctctatatctcagttgcttcaataataatgtacgtatacagatatacatgtaaatgctacagttaataatgcctacat<font color="green"><u>AAAAAAAACTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCTCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AGAAAAAAAAAAAAAAAAAAACAAAACAA</font><font color="green"><u>AAAAAAAACTATTG</u></font>aatggatttaaaggcagtaatgcatcatgctgctatgggaaaataaggtcattcttt<br>catcccttcgattaataaatctttattgagcactattaaaaaaataaggcaataatggatggggaagcacatgacagagaataaagccctatcaaaatgt<br>acagtaccgtgattacatatgactgccttcagaaccttactggatgatgcttaaatatcacctgatatggtttggttgtgtccccattcaaatctcaact<br>tgaattgtatctcccagaattcctgtgttgtgggagggacctggggggaggtaattgaatcatgggggctggtctttcccgtgctattcttgtgatagtg<br>aataagatctcatgagatctgatggctta	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PKD1L1:NM:138295:55/57
0	chr16	80217440	80217441	1001008	0	+	Ya5-MLS16; RIP_Alu_chr16_078_01	TTTCAATTTCCAGCATTATTTCC	CAGCAATTCCATATTCCGCTAT	SINE	Alu	Ya5	aacagcatggggattcttcacacattacatactactaatccaaattaaatacagaactaccacatgatccagcaattccatattccgctatgggtataca<br>tccaaaagaaacgaaatcaatatctcaaagagatgtctatactcccatattcgtagcagcattattcacaatagtcatgatatacaattaacataaatat<br>ccatcaactgatgaatgaagaaaatgtggtatatatgtacaatggaatagtgtccagccttaaaaaaaaaaagaaaatcctgtaatttgcaacaacatga<br>atgaacctggaggatattatgcttagtgaaatacaccaggcacaaaagacaaatgctgcgtgatctcacttataggtggtatctt<font color="green"><u>AAGAAGTCAAATTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGTCAAATTCA</u></font>cagaagcagagaacaacagaatgatggttgcctgggactgggggcaaaaggggggaggatgaggagaagttggttaaa<br>gtctacaagatatcagctcaacagtaggaataagcactgaacatctattgtacaacatgactactatagttaataataacataccgtatacttaaaatca<br>ctaagaaagtcaatcttaaatattctcactaccaaaaataataaggatgtgagctgatggacatgtgaagtagcttgatttaatcagtttgcaatccata<br>catatatccaaacattactataaatatacactattttatttgtcaattagaccttaataaagctgggggaaataatgctggaaattgaaattttaaaatt<br>taatttc	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr20	9605207	9605208	1001009	0	+	Ya5-MLS20; RIP_Alu_chr20_009_01	AGGGTCATGGTATGTCTTGTAGTC	GTTTGAGATCGCTGTGACTTGT	SINE	Alu	Ya5	cttaaacatacttatctcaaaatttggcagaaagagtttttgctataaaaataagtaaggcataggagaactgtatcagaaaatgcaacttttgtccagt<br>cctatagaaattttagcctgtcttggttatcaatatctcagtcactgacatactcagtttcacatctcagcaagcactgacatcatgcctagcccatgac<br>gggtattcaataatgctgaacaaattgaatgttgaatacctaaaaaaggtatggatatggtgaataccttagaaaagagtagaatttgtacacttggaag<br>gtacttctagaaagatttttatgccatgtccaggatggggtagaaatattataaaggtaacagaatttcttccaacttatctgttttctta<font color="green"><u>AAATTAAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA<br>AAAAAAAAG</font><font color="green"><u>AAATTAAGG</u></font>ttcatgttttctccttacctctctgtcttataatgtgctagtgttcccattatacccttgacaagtcacagcgatctcaaac<br>acagctctgtgctttgtggaaaggccctggctctggagtctcctgagctgggtggagcacgcctcagctctgctatttgagagttgtgtgactgttggtg<br>agtcctttgggttctctgagcctcagatcacccagtctgtaaaagaaggataatacctacctcacaggggcttagatggggtaatgtgtgttcaaatatg<br>ttactaactatgagccccagtcctacatcccaaagtgagttcgcatctcacagaaacaaacaaacaaattatgaatctgttataagcaattaagtaagga<br>ttcttcaca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PAK7:NM:020341:4/11
0	chr15	70408639	70408640	1001010	0	+	Ya5-MLS21; RIP_Alu_chr15_068_01	TGGAGAGTTTCAGGACAGAGCAAC	CTCCCATAACACCTATGCATTTCTC	SINE	Alu	Ya5	atgattccagctagatgacattctgggaaaggcaaaactatggacacaggaaaaggatcagaggctgtcaagggttaaagggaagggagggatgaatagg<br>tggaccactggagagtttcaggacagagcaactactttgtgtgacactttatacatttgtcaaaatccaaagaatgtacaatatcaagagtgaaccctaa<br>tgtaaactgtggacttcacctaatcatgtatcactattggttcatcaattatagtaaatgtactatgctaatgcaagatgttagtaacgggggaaactgg<br>gggtgaagtgaaagggtgttggggaattctactttctgcttgatttttctgtaaacctaaaactgattttttttaaagtccttt<font color="green"><u>AAAAAAAAAGAGCGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAAAAAGAGCGTC</u></font>atgaagtgtaatcacggagaaatgcataggtgttatgggagcaatctggggtagggggtggggagggcttgggagcatggg<br>ggtcactaatgaagtcaagacccttgtatgtaaagttagacagacaaagtttcaagttccacctctgccacttatccaccatgtagccttagccaagtta<br>cttaacacctcttaaacctcagcttactcctctgtaaaatggggctaatgacgcctgccaccaaattattatgtgatttaaataaaatgcaaataaagta<br>cttggcactgccagtgatgagagtcagtgcttggcgaaagagagctccttttcatgccatggtgggtgaggaggctggctcaggtggagagcaggaggag<br>aaa	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr3	40241623	40241624	1001011	0	-	Ya5-MLS26; RIP_Alu_chr3_040_01	GGTGTGACCAAATACCCCTCAG	ATACCCTGACCTAGTGTACCCATTAG	SINE	Alu	Ya5	ccttaatatccaacagactcctatttaaaaatcctatatagagaggctccagacaggctcccaatactccccaagattgaatataaaactttgttggatt<br>tatgcacatttttttcctccctagagagaagacctagagcaagcttattcaacccgtgccccatgtggcccaagaggactttgaattgagcccaacacaa<br>attcataaactttcttaaaacataacaaaatttttttttgcgatttttcttttagctcatcagctatcgttagcatattatgtgtgacccaagacaattc<br>ttcttcttccactgtggcccagggaagccaaaagattggataccctgacctagtgtacccattaggtcctcaaaagggcctatgat<font color="green"><u>AAAAAGAAAATGTA<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAAATGTA</u></font>agaggcacaatttttcagcaaatgcctcattttctagacatgttctctgcaacgagtttatcttggaaggcac<br>ttctagcaattctttttctccaggggtatcagttgacagacatgtgactaagatttttcttctgaggggtatttggtcacacctgctctaaagtccttcc<br>aggctattgtttgtgcttgctgggctgctgtggacgtggaggtaagtggcgaggaatgggggagcaactgtgcctcagagcagctctgctttcagccata<br>ttatgatttgtcttctctttatttttatttttgtgggagatacaacctttggtacaagtgaaagtgcactctgctgccttccctttagatttcatttaag<br>ggaatcctctatg	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:MYRIP:NM:015460:10/17
0	chr10	16000967	16000968	1001012	0	+	Ya5-MLS28; RIP_Alu_chr10_016_01	AACTCATAGAATCGGATGTAGCACTAC	CTGGATTTAATGTGAGTAGACTTAGAAC	SINE	Alu	Ya5	gtaattaaaacctcagagttagagtgagtatgaggaattgttttgcaaatgaaggaaataatggagaatttagatttttttcccagtatataaagacatc<br>taaatcctgttgtatgaaggataaactcatagaatcggatgtagcactacacttttgtttctgggaccacctaaaactaacccattctaaccaggtggct<br>gcctaatctccatctgtatccttagagatctcatgatttctttagatgatgtgttaaaaaacatgctaggcttttggcttcaccattatgacctgttcct<br>tatataagcaagaattattaaacgtgtggttagcaaatgcttcacaaaatcaagttgcttgcttctttgtatcatgcttttctagaa<font color="green"><u>AAGTGAAACTTTG<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCATCCTGGGCGACAGAGCGAGACTCCGCCTCAGAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAGAG</font><font color="green"><u>AAGTGAAACTTTG</u></font>gaggaaatacccaagaaacaagaatattgcctcaatattgtttttaaaaagtcagaaagcgtaccgtcgat<br>aggaataatactaggctttgattaaatagtcaactccttaaggatgttctaagtctactcacattaaatccagtcatttatacttttttccctctacatc<br>tatacaatttgacagtgatatttgatgtacctaataagcttctgcaagaccttaaatcaccatatggaactctactagccaatggttagtatgggcctgc<br>taaccaatacactgaccacactaaaacaaaagccgtcttatgttggaaacattttgaaaggtaaagactgaaataaaaaggtctttcttgtaattgttct<br>aaaaatgcaactaaca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr3	194614740	194615040	1001013	0	-	Ya5-MLS29; RIP_Alu_chr3_196_01	CGCTCATAGATCTGATCCAATCTG	GAATGCGTTGAGTTTCACAATGAC	SINE	Alu	Ya5	tcattatttactttatattgactttgtaaatgctatttataggtgagccatgatgagtactacaattccttttctttctcctcacaactttttgtttacc<br>ctggagttaataattgccttcttttttcccatttgctaaggtttctatgtactaaacaccaatttaaactctcttgaatgtgtacattttctcttaatat<br>gttcaagcacactaagaattctgtcaatttaattttcttaaagaagccgctcatagatctgatccaatctgggagttctttcacctctttctagattcag<br>atttcctctgttttgaatcccatattcttttctttctcagctttctcaatcattttggtgaaacaagttctttctctccttttct<font color="green"><u>AAGAAAGAGCGCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAAGAGCGCATA</u></font>gtaagtaaatttttgttcctgtcctgacacaactgaagaagtttttagtttattctcatacttaattgatgtggaattttaggt<br>ggaaaaatatcatctctcaattttgaaagcactgtgccattgtcatgttgtttccaacttagtcattgtgaaactcaacgcattctgattctgattcctg<br>tttctttgaatgaaatcagtttttctctgtattagtcagggttctccagaaagatagaagcaataagatagatagatgatagatagatagatagatagat<br>agatagatagatagatagatagggattttttagcagaattggctcatatgactacagaggctgagaagtctcatgacaggctgctgtctttaagttggag<br>a	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr19	3994561	3994871	1001014	0	+	Ya5-MLS30; RIP_Alu_chr19_003_01	GCACGATTGTCCCAACGAATCT	GGACCTGCCACGATGTCTTGTATAG	SINE	Alu	Ya5	gacaggctttcatcatgttggccaggctagttttgaactcctagcctcgagtgatccacccgccttggcctcccaaagtgctgagattacaggcgtgagc<br>cacagtgcccagcccagattggcttttgccccccactcagcagaatgcccttgagaccctcttgtcctttctaaattaatggcaatataataatatttca<br>caattcctgagggcttactgtgtaccagacactgagctaaatgctttatggccctacaatcaccctgtaaaatagatacaatttgtggtgcccagcctgc<br>acgattgtcccaacgaatctgccctcctgacatccgggtatgacctgctcacattgaacagggctgagctttataggatgtttt<font color="green"><u>GAAAATGGGAGCGTGC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>GAAAATGGGAGCGTGC</u></font>tgtttcaggttaggctatacaagacatcgtggcaggtcccagtagctcacatcgtaatcccagccttttggaa<br>aaggggaggattgctcgaggctagcagttcaagaccagatttggcaacatagggagaccccgtatctaccaaaaaatcttttttttttttttttgagaca<br>gtgtctcactctgcagccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcttgcctcagcctccc<br>gagtagctgggactactggtgaccagaaccatgcccagctatttttttttgtatttttagtagagatggggtttcgccatgttggccaggatggtctcga<br>tgtcttgacct	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr16	15492975	15492976	1001015	0	-	Ya8-MLS32; RIP_Alu_chr16_015_02	TACAGACGATTCTTACATGACCCAG	CTTGGGGAACCAGAGTCGTAAC	SINE	Alu	Ya8	cccaggaggtcgaggctgcaatgagctgtgatcacatcactgcacttcagcctggggaatagagtgagaccctgtctcagaaaaagaaaaggaaaaaagt<br>aacaataaattcaggtagcaaggcaaagctctcctattttaggaaggttgtaaaactgagagtactttaaaaattctttccaatccctgattaggaggga<br>gggaatataagagctttattagttaattacagacgattcttacatgacccagcaaaatattggtaatactgtgttccacttacccagcattaattaaatg<br>ctatgtagtttacgtgcctcatttcatgtgcccctccttacaattcgctaaggtgggtagagttacaaaggaggaaaagagctt<font color="green"><u>AGAGAGGTTAATAGCG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAGAGGTTAATAGCG</u></font>gacagagttcaacccaggtgtctgattcccaagccagagttgttaatctgttacgactctggttccc<br>caaggtagccccagcacaaagatcaattgattcctgcaatttccatgtaaagccttacgcaaacctccactctatccccttccacttcccctttcattga<br>aatgtgaggtaagggaaactgaaccagaaaaactgaaaaccggccaggtgaggtggctcacacctgtaatcccagcactttgggagaccgaggtgggcaa<br>gtcacttgaggtcaggagttcgagaccagcctggccaacttggcgaaaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcgggcacct<br>gtaatcccagctactca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr12	106890953	106890954	1001016	0	-	Ya5-MLS34; RIP_Alu_chr12_105_01	CTTACCAGTACAAACAGCACTCCTC	CAGGGAGGTGCTCACTTAATTTG	SINE	Alu	Ya5	aaggaaaactttgcattatatgtaattgatgtgttccttaaaagtaggcatagggtagaaatcatattttggtaaattaaatcttttctactttatattt<br>tttgagacgaggtctcactatattgcccaggctagcctcaaactcctgggcgatccaccagctttggcctaccaaaaatctactttccaaattataatct<br>taccagtacaaacagcactcctcaattgttagttttctaaagttagattttcttgtatccagtttcttaaaaaaataaagcttaaggcatatagccttaa<br>tgcttacatcttaaggcaggggtgtccgatcttttggcttccctgggtcatacgggaagaagaagaattgtcttgggccacacataaaatacgc<font color="green"><u>TAACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAATACGT</font><font color="green"><u>TAACAC</u></font>aaatgatagctgatgggctaaaaaaaaaaaaatttttttttttaaatcatgaaaaactctcataatgtttttaaaaaa<br>agtttacgaatttgtgtcagaccgcattcgaagccgtcctgggccacatgccgcccacgggctgtacaagcttgcctgaaggtatacttaatggagtata<br>ccttaaggctttgtctcccctatcctagtaaaaccattctttctctttaaaatagctcaatcgcatgcttaccctgtgatgccggatgtaacatagtctt<br>tccccaagcagttataaccatggcgaacgaggtcctcacacacatccttcactttactgcctccaaacgcagtgccgtagtggaatctgccgtccagcac<br>accggccttgccagcc	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:POLR3B:NM:018082:25/28
0	chr10	107677560	107677869	1001017	0	-	Ya5-MLS35; RIP_Alu_chr10_107_02	ATCTGTAGAGCCGCTGAATGTTC	ATGTAGATAGACAAGTTAGCCACTATTG	SINE	Alu	Ya5	gtctgaaggcacctcccatatttttgtcatcacactctcacatcaaaccttggcatgttatgtggtatgttttacatcctgcatccgacatttggaaggc<br>aacaagaattgcagtttgtccatgtgggaaattgcagtgtagacacgtgataagaggttgaaacctgtggtagagtatgacctactctgtgagtatgtgt<br>gtttgtgaatgtgtgtgtggttgatgggggcacagaagtgtgtaggcagagaaaggtttacttagtattagaaaatggcattacatgtagatagacaagt<br>tagccactattgtttagctttctctatggcaaccagctctcatttgaaactgtcacttgatttctcgttattgtagctgttgttt<font color="green"><u>AAGAAGTGATTAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTTGTCTCAAAAGAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGTGATTAATG</u></font>gacctgagttaatctgctctttcaagaaaggaagcatttcagtctcttagccaactacatggtagtaccgtttcc<br>tagctgataagtaggaaagggactaatgtatttgtaataaaatagatgcagtggaaccagagcaatgattttgcaaaaaaatgaacattcagcggctcta<br>cagatttctcatgtgaattagggctgattcggagaaaaaaaacaaaaacccaaatcactgtggattttctcagatgaatttcagtattcaggagggtctt<br>agtttcttccttagcagacaacaacacagacatccagtaagggagattgatagacctcagaaatgggacaggacacgggtctggacctcgtagtaaagat<br>gccaccacca	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr11	46036249	46036582	1001018	0	+	Ya5-MLS36; RIP_Alu_chr11_045_01	TTCTTTCATTAATCTCCAAATGGC	AAATATTTGCAGTCTATGTAGCCAAC	SINE	Alu	Ya5	gataatggcctccagctgcagccatgttgctgcaaaggatattatgttgttcttttttatggctgtgtaatattccagtgtatatgcaccacattttctt<br>tatccaatccactgttgatggacacctaggttgattccatgtctttgctactgtgaatagtgtggcaatgaacatacaagtgcaagtgtactttttggta<br>gactgaggtattttcctttgggtatatatccagtaatgggattgctgggtcaaatggtagttttacttttattctttcattaatctccaaatggccgagg<br>ctgaactaatttacattcccaccaacagtatatgtgttcccttttttccatagcctctccaacatctgttatttttgactttttaat<font color="green"><u>AATAGTTATTCTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>AAATAAAAAAATAAAAAAAAATAAAAAAATAAAA</font><font color="green"><u>AATAGTTATTCTG</u></font>actggtgtaaagtggtatcactgtgcttttgatttgcatttctttgatgatta<br>gcaatgttgagcattttttcatgtttgttgactgcttgtatgtctcccttcaaaagtgtctgttcatgttgtttgcccactttttaatggggttatttat<br>tttgttgttgttgttgatttaagttccttacagattctggatattaatcttttgttggctacatagactgcaaatattttctcccattctgtaggttgtc<br>tgtttgctctgatagtttcttttgctatgcagaagctctttagtttaattaggtcccaaatgtcaatttttgtttttgttacaattacttttgaggactt<br>agccataaattctttgcctaggccaatttccaga	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PHF21A:NM:001101802:5/18
0	chr10	85983260	85983261	1001019	0	-	Ya5-MLS37; RIP_Alu_chr10_085_03	ACACGTTGCCAAACAGTGATTATAG	CATTCCTCGTGTCCTGTCTTCTG	SINE	Alu	Ya5	tttgaaataacactgacataaaattgttcagaccttattggcttgaatttgtaatactgggacccagggaaaggaagtgacctctgtgggccctggggct<br>ggaattcaaacctgcctcttccttcctggaaccctctgctctgttttcatacctcagctgggattacctttaatgctactctgtagggttgggcatatca<br>caaagccggggatggcctccctgggggtatcccaaagctgaaaagaaaaatcttcgtacattcctcgtgtcctgtcttctgttctctgtctagaagacaa<br>ctaggaatagctgggtaaaacttgggaaatatagtcatttgcccaggtatttgttatacattatgacaaaaccctggatggttt<font color="green"><u>AAAAATACCCAATTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AATACCCAATTAA</u></font>ctgaattttcacattctgtattgttttgataataccttattggtttggcattcaatatcaatgaaagaaaattataggatttattgt<br>tgtagcctctttgaaaaccaagaaatgcatacaggtgttgtctttcgtggtgttctataatcactgtttggcaacgtgttatataatctctcagtaaaaa<br>tataagcattgaacacttactttcaaactaatgaggtaggtgattgcttatcatcccattttattgacaagaaaattgtcaagagaatttaagcaacttg<br>cccagtaccacactggataggagctccattagggatagcagcccaggcatgtggctccaggctctgaggaactgtgcatctggaaggtaagaaggca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:LRIT2:NM:001017924:2/3
0	chr7	139933414	139933415	1001020	0	-	Ya5-MLS39; RIP_Alu_chr7_139_01	CTAGGCATATTAACGCAATAAAAGTAG	CTTGCTTTCTAGACCTGAGCTGTC	SINE	Alu	Ya5	aaagtagaaagctggggcgtggtggctcacgcctatagtcccagctattaaggagggtgaggtgggaggactgcttgaggccaggagtttgaggccaccc<br>tgggcaacataatgagacccccacctctaaaacaaaattagccaggggacggtggggtgtgcctgtagtcctaactgttcaggagcctgaggtgggaaga<br>ttactggagcccaggaattcctggctgtagtgagctatgattgtgtcactgtacttcagcctgggagacagtgagatgaagaaagaaaagaaagaaaaga<br>gaagagaagggaagagaaggaaagagaaagaaaggagggagggagggaaggaaggaaggagagaaaaagctgaaattaattgt<font color="green"><u>AATAATCTATTTGACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>GGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>ATAATCTATTTGACTT</u></font>aacccaatagatctaaaatactttaatacataatcaatgttgcaagtattaatgattacatttttttccttactgagtctttga<br>agtccaatgtttgtttgacacatacaacacatctcaatttggactagccagacttcaagtgctcaacggccccatgtggctagtggctaatgtactggac<br>agctcaggtctagaaagcaagggctgataaatgaaaaggaagcaaatagcatccattgataggaatacaagttgtgtaggatgtaagccactgactttga<br>gtgccgatttcttagttttattttagtgaaaataaaatcagttcacacccagtatcagttccctaaccctatattcccctaaggtcccagattactcaa	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr8	106664517	106664518	1001021	0	-	Ya5-MLS41; RIP_Alu_chr8_106_02	TGGTTCGACATCTTTGCATAGC	ATACTATTTGGTTGACCCTACTGTTG	SINE	Alu	Ya5	ttcttgaaagactgcacaagctaaacgtagctgacctaaagaataatcattcttgaaaatctttactaacaatgtataccagacaatgatggtgagtact<br>agatttctaaaggaaaaactggcttaatttactgtcattgaatttcaataggaggtagctagaaatacatgcataaatagatgggaatagcttatctata<br>tgtatttctgatccatttccttgattggaatactcttgcttgcaacaccatggtatactatttggttgaccctactgttgtttgacagtcttcacaggcc<br>tcagacagcctcatgagaatacaacttctctgaagtactactgtatgtcaggcatataaggtgacgttttaattttaaaaataggcttcaaaaat<font color="green"><u>GGGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGGGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCC<br>AGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGA<br>GCGAGACTCCGTCTCAAAAAAAAAAAG</font><font color="green"><u>GGGCT</u></font>tgacttctacatcagtggtaaaatgaaaagcctccaatttcaggtattagagcaaagagtagaggttt<br>ctgactgaccttcccctagtgaagagctgaaacagacactgttactatttaccagtaaagtgggtccaaaaagaaccacccagtaatagcaagccaatga<br>cttggcatggctgctatgcaaagatgtcgaaccaaaccctgtggtttgacaacatcttttgcatctatgtaggttttgtttcaaattcttgtatacactg<br>ccatgctgactgatgcagcataatatatgctatgtatatatgcaacatttcaaaggaatcctcttcatctagattctctggtattttaaaaatctcacta<br>aggaatgttacattttttgagacatgg	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ZFPM2:NM:012082:5/8
0	chr6	121455088	121455089	1001022	0	+	Ya5-MLS44; RIP_Alu_chr6_121_02	AGCCTCTGTCAGAAGCAATAACTAG	CGAATTAAGTCTTTACCTAATTCTTGTC	SINE	Alu	Ya5	cctaagaaaactgctacgtattgctgcatgatcctcatgattatcatatataaaatcagatttatgtaagtatttccctatttgacatttacgtcagaaa<br>aaccctttttataccaaagctacatacatactctctcatacaaacacatgaatacacagatacatacaccaaacacatgtggactcacataaatacacac<br>ataaagcaaaaagctcttttgttgaaagcatatgtaattctgctattcagtactaatctattttatttgaataccaagactacaatgatacgtttcacaa<br>atagcctctgtcagaagcaataactagagaaaaattatcaagcattaaatcaaaagagaaaatgattctttttaataaaaacactt<font color="green"><u>AAAACTATAAACTC<br></u></font><font color="red">GGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTATAAACTC</u></font>ataaaatttcaacacagctaataattttactgaaaattatgttattgctaacaaaaaagttttaat<br>gttaaatgtatcttgacaagaattaggtaaagacttaattcgacattattgaaattgaatttttattgttttcatttaaaatatccacattacatattgc<br>caagaataaaatatctacagtctaataagaaacactagtgacacatgattgcaaagataatgcagttttttcatctttgtttcctcctgttttcttcttc<br>tactcatgtgtaactccatcttttacctccttcaaacaaaggatgttactacctccttcagaggacatccatatagccctttcataggctatctgttatt<br>tataaatctgttttcttttt	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:C6orf170:NM:152730:24/32
0	chr13	54524084	54524390	1001023	0	-	Ya5-MLS46; RIP_Alu_chr13_053_01	TCAGTAAGCATGAGTCTTCCAGTTC	CCCACCACAGATGGCAATACTC	SINE	Alu	Ya5	tagagactgcctacagtccttggcttatggacctgtccatcttgaaaaccaacaatgtctagtggaatctttcttgtatcccattgctctgacactgact<br>cttctgactccctcactatgtttgggatcactcctgtttacagtggcccatctcaataatccagataaatctccctatttaatgtcacctgattagcaac<br>cttaacttccctttgctatataacataaaatacccatagtttctggggaccaggatatagaaatctttgggggactattattgcccaccacagatggcaa<br>tactctccaaatatatttagagatttagtgtaatccctatcaagatctcagttggcttttttcaaatttacaagctgatctt<font color="green"><u>AAAATTCATATGAAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAATTCATATGAAAATA</u></font>aaagggactcatgatttccacaacaatcttgaaaagaaaaaagaactggaagactcatgcttactgatttaaaaa<br>gttactacaaagctacagtaattatgattacatggtattggcatagggataaacatataggttaaagaaattgaattgaaaatccaaaaagaaattcata<br>catttatggtcaattgattttcaacaaggatgccaagacaatttaatgggtgaaagaatagtcttttcaacaaatgatgttgacaataggacactgggaa<br>ataaaaagacatacaacccccaaatttaaatgtgcaaaggattttaacacacatttttccaaaaaaggtatataaatggtcagtcagcacagaaaactgg<br>gcttaac	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr4	188686168	188686169	1001024	0	-	Ya5-MLS50; RIP_Alu_chr4_189_01	TAGAGGGCACACATTGAAGTTTTC	CACTTACATTTAGAGGTACCAATGAC	SINE	Alu	Ya5	gccagctcgaatgcctggctttatatcccaatccttgtccctcccgctgcgctctcaggcaatagatgattggctatttctttacctcctgtttttgcct<br>aattcgcattttagtgagctctctgattggtcaggtgtgagctaagttgcaagccccgtgtttaaaggtggatgtggtcaccttcccagctaggcttagg<br>gattcctagttggcctaggaaatccagctagtcctgtctctcacctccagatcctattttcccctcacttacatttagaggtaccaatgactatttccag<br>tagtatggagagcattgacagttcatagcatgatctggcagtagaaatttgcaaaatattaccattagattcccctaatcaaccgcttat<font color="green"><u>AAGAAGCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAA<br>GCAGG</u></font>gtgagtgtgtatacaatattatacaatattcttcaatatttttgtcaaaataatgagtataatgatattggctgtttgctcctaatgtcactgga<br>caatgtgggaaaagaaagaaataagctcccagctcaagggttcaatagatgacctgaaaacttcaatgtgtgccctctaggaggcctcatctctagccat<br>agggctgagattgctgaaaatcaagcctgaatcttgtcctgtgaccagctcaggaggcctcatctctctagccacagggctgagactgctgaaaatcaag<br>cctgaatcttgcctcatctctctagccacagggctgagattgctgaaaatcaagcctgaatcttgtcctgtgaccagctcaggaggactcatccc	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	222819192	222819193	1001025	0	-	Ya5-MLS51; RIP_Alu_chr1_219_01	TGGAGAACTGTCCTTGTTGTGAGTA	AGTTGAAATACAGACCCACCTAATTC	SINE	Alu	Ya5	atgttggctaagctggtctcgaactcctggcctcaagtgatccgcctgcctcggactctcaaagtgctgggattacaggtgtgagccactgtgccggctg<br>actggttatttctttaggatcgattactagacatgacattaatacaatataaaaggatataaccatttttaaggcttatcatacacatcatgaaactatt<br>tttcaggatggctctaagaattcctagttctactaacagtgtacatatgacctatctaattctttcttttcatcctttgtgagttgaaatacagacccac<br>ctaattcttaaaatttagactttgatatgagacatataaactgaagttttcccactgagattatacatgttgtcttattcactt<font color="green"><u>AAGAATTTACCAACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTACCAACAC</u></font>aaaaattatactaaattattttacgaggttagcttgaattaaaagcattaatttctgt<br>tcatattagaaactgaaaaagagacaaaaggactgtgattataaaaccatacttgaatttatgagttaaagtatgcattaatttactcacaacaaggaca<br>gttctccataagaaaatggcaaacgaagcaattcccaagaaggcagtgataaatacaggtttccatggcagtccataaaaatcaggcccaggctgaacat<br>catcaggcaatgtagcaactagctgaatgttagaaataatgttagaaataatgagaaaccttaaagaagcttaccataaagcagtcacaaagactcattc<br>acagaaattctaaaccaactctatca	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:MIA3:NM:198551:7/28
0	chr4	148256048	148256049	1001026	0	-	Ya5-MLS57; RIP_Alu_chr4_148_01	GGTAAACATAGGCTTCTGATTCAAG	TAGTTTGGCCTGAAGGAAAAGTG	SINE	Alu	Ya5	gcaaagatttctttctgaaagatggtagaaacaatttttcctttgatgttgtctctcagcattctgaatttgatttgtgaaggtattttgtgcagcacat<br>caatctttgctaaaattcttcaagtttctctttgcaaaaaccagcagaaatttaccagagtaaattatgaaacattgctgcagttgactccaacaaacca<br>gagttccacaacaaaatgaatgtacaatacaaaaaataaaatttagtgggccttgttattgttttacatatagtttggcctgaaggaaaagtgaaactaa<br>gttataaattaagttgtatatcatctaatagaatgaggttttgaagtagtaatagaattttgaaactctctgaattcttgtctaaaac<font color="green"><u>AAAAATCATCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAATCATCCC</u></font>ttctttttgctgtattctcttgaatcagaagcctatgtttaccagctgctctaagtcactctttcctttattgcagtgt<br>ttgacactataataccttaaagtgggggttgcttatcttgggagtggtggtaaatgttgagtgaatgtgggaaggaattatagatgtttaacaactgttt<br>gcaaaggttccagggttcttgggagggaacaggaaatattaattttatactagctcccaaagccaaaaggaagaagaaaaaaaagaagcttcttaatctg<br>tttagattacctctaaggagatgagtcatgagtgaaattcaggattaatatacaagaagagctcctaagagaccgtctagactacaggccatctttctct<br>ttcacagaa	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	119080705	119080706	1001027	0	-	Ya5-MLS58; RIP_Alu_chr1_118_01	GATTTAACGACCAGCTTAAAAGATTC	AATAGATCATTATGAGGAAAGGCATG	SINE	Alu	Ya5	gctgcacgaatacaagggtaatacagacatactgcttttatccagtaaatattgggataaaagtataaaagtcgctctaacacaagattaaacatcataa<br>atgttttaagagggctataggccaataactatgaagacccaagaaacatttgatataggtctttaagagatgagggaaaagggcatttctagaaaataga<br>tcattatgaggaaaggcatggtgataggatagcagagaacatctctggggtataataatcaatcctttatgtaccagtatataaagcacctactagtaag<br>cattagaagatctggggaaagtgaattaattttttctgggattggatttacacagaggcatgctggagctggctcacaccagcttat<font color="green"><u>AAAAGCTGGTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGTTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGCTGGTTGC</u></font>taatattaaagaatcttttaagctggtcgttaaatctttggtagcttgaaattggccatcttaagcatatttactctactg<br>aacatgtacatgctacataaataaatctggctttcattctctctcttcctctttctatctcccttccttctcctttcttctttctttcgtactcttttcc<br>agataaccggcacactactggatttatgtaacaccaggaattagattattatggaccctctgaacagttgaattgtttcagttttcattcagatttaaaa<br>tgttgcttgtgggtctactccctagcctgatagtttgcaagtgagaagagccatggaaactgcagaagacaggagctcctgactttctggccttcctagg<br>atcatg	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	81194354	81194668	1001028	0	+	Ya5-MLS59;pAlu1-80585314; RIP_Alu_chr1_080_01	GTTGAACTAAATGCATAGCCACCA	GGGAACTTTTCAGTAATTCGTTTGA	SINE	Alu	Ya5	catagtatttcagggcattatctctcaagtggtaccttaactgagccttcagcaggccattccaatgttctatctagctacatgctactgaaggtaaagc<br>atatttaacgtgaaagtatatattttttatgaggacaaattgctctctccttcattatggaaagattaacacttccatctgatggctgcgtggtcagcca<br>ggaaaccagttctatttcagaggctcaatattggtctgtgctgttggcagattgggcaataagcggtggtggtattccaaccagccattttaagaagtct<br>atatggttgaactaaatgcatagccaccatctttaccaatttgtaaatgtgcctattgagcaagcaaggggctagggaatgaaaggag<font color="green"><u>AAAACTGGCTGG<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGTG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTGGCTGG</u></font>catccagaggaagggctgtgacatcaaacgaattactgaaaagttcccctgcaatagacatttcatgagacta<br>ttttcatgggaatatcttcacattctgttgattcagaaaggttcattcacattttcataatttcaacctccttgttacaattcttctagtcctgttcttt<br>ttaggcaatctgtcttagtctgtttgatatgctataataaaatactatggactgtatagcttttaaacaacagaaaattattttatacagtccagaggct<br>aagaggtccaatctgcactaacagatttgttgtcaagtgagggcctgttcctcctaaatggcaccttctagctgtgttctcacatagtggaagggtcaag<br>acagctgcctgaggc	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr12	16176405	16176710	1001029	0	-	Ya5-MLS64; RIP_Alu_chr12_016_01	CTAAAATACATAGGCTCTCTGAAGAGG	CAGCAGTTTCCAGCTTACTGATG	SINE	Alu	Ya5	atgccttttgaaactgtcccaaagtttttggatgttctgttctgtgggggtttttcttcccagttttttctcttcacatttcagtttaagaagtttctat<br>tgacctatctttaaggtcactgatttttttcctcagcagtttccagcttactgatgtacccatcaaaagcattcttcattttgtcccagtgtttctgatt<br>tctagcatttcctttcaattcttacttagtttccatctctctgattctattatgcatcttttttcatgttgtctgttttttcattaaagctattaacata<br>ctagtcatagttattttaaattctctgtcagataattcccaaatctatgccatatctgaatctgattctgatacttgttttctctataaagactg<font color="green"><u>TTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAGAC</font><font color="green"><u>TTTGA</u></font>gttttttttcttgcctctagcatccaatgtattttttgttgaaagctatgcatgatatattgggtaacatgaacaaaaacaaatgggcc<br>tttggtgtaaggttttatgttaatcgggcaaggagttgggctgtgtttaaggtttgctgtagctgccatagtcttcaaatttctatagtattcttgtttt<br>tatctcccctctttattctgggcttccctaaaattcctcttcagagagcctatgtattttagctctgtcagctgtaatcttatactgaaaccatgttgct<br>gtggtggtaacagatgagggaggagtattctatagccttagtattaaatctcagtctttcagtggtcctgtgtccctgggctgtaactgtcacaaatgtt<br>tcttag	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:DERA:NM:015954:6/9
0	chr14	35128041	35128042	1001030	0	+	Ya5-MLS65; RIP_Alu_chr14_034_02	AATTAGAACATGTGGCTCCCTTATC	TTGGTCTCCTTCAAAGCAATTTAC	SINE	Alu	Ya5	tgcagccctgtcagcatgttgattttagctccttgatttcagtgaaggccctttttcacttctgacctccaaaacaaaacgataataaatgtgtgttttc<br>ttaaaccattaagtttgtggtaattcagcgcagcagcaataggaaacaaatatacatggcattctcaattctgtgagctattccaggatccctgaagcaa<br>atcctcctttttacttaagctaatttgggttggattttggtctccttcaaagcaatttacaagatctcttattataaaacagtacttctcactaggacaa<br>aaatcagaccttcagaaataaaatacatgtgctataccctaaacatgtcatgacaagatttcttctgagtgatgaatggacagg<font color="green"><u>AAAAAGAAATTTGAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTGAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAGAAATTTGAAG</u></font>aagtataacaaactagcatttgacaggtaagagtatgtcactgaattaaaatgtagataagggagccacatgttctaatttccctct<br>gatttcttctttgtctcacgggttatttggcagtgtgtgattggattccagaaagatattccaaatatctttctgttgttgacttctaatttaattttat<br>tgtgttcacagaagatcctttgtattatttgaaacttttggccaggtgtggtggctcatgcctgtaatcccagcactttgggaagctgaggggggaggat<br>cacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaaaattagccgggagtggtggtggcac	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr13	55438088	55438089	1001031	0	+	Ya5-MLS69;1104685361072; RIP_Alu_chr13_054_01	GTGAGATATCTAGTTGTGTCCAAGCA;NA	AGAGGATACGAAGGAGAGGAACAT;NA	SINE	Alu	Ya5	ggctgcttttccaaatttttgaagtattttgaattctaacatgatactgtcatccaaggtgttacccatttcacccaacttgatgtaatcaacactttgc<br>aagcgtatgctttttatgaaagcttgttacatcaaagaaggaagtgagaaaactgaaaaaggttcctgaagctcagaaagatctatgattataaagtgta<br>ctaaaattctgcaacagtgtcttgaagaaatcagtttcttttagaccactgaaacatcaagcacccttgtggcattgtgagatatctagttgtgtccaag<br>caaaacagcgtatatcatcaagaaaacacctgcactcagctgtaaatattttaacaattggttcaatgtaattttgcaacattt<font color="green"><u>AAAAGTTCACCTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGCGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGTTCACCTTTTT</u></font>atacatatgtatacatatactttttatatataaatgtataaatatatatacttaagctttatcctctaagtatccccaaa<br>gccaaaatgttcctctccttcgtatcctcttcctatctctctggattagtttcactagacagagataagaaaatataattgaagactataccaactttag<br>aaaaaaaaatacctatcttcagatactggctgtggcacttgttagctgagtgacctttatcaaattacttaacttcttttatctttagttttcttatctg<br>caatgtagggatagtaatacattctcatggggttagcagaaaaataattagtctattcacagtgccggcatataacaggtagttagtatatagaaactgt<br>aata	Other;Venter	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr13	111076812	111076813	1001032	0	-	Ya5-MLS70; RIP_Alu_chr13_109_02	AGTTACTGGATGCATTATATTGAGGA	CTCATGATCAGTTACGGTTACTTTCA	SINE	Alu	Ya5	ttactccgggggctcccctttcacccttgtctcctttacgtccctgcagtcccgggaatccttgtaatcctggtggcccattgtacccctgggggcccac<br>tggcccaggctgaccctgtgggaacaacaaaggttcaatttccacgattaatcacaatacatactcatgatcagttacggttactttcaaaactacattt<br>ttttttttgtttttaaagagctataatctacagggaacattatatgtaaactatcgtctactgccatgatagctaacaaaagaagtcatagagtttaaga<br>agagaaaatatggaatgtgagaaaaaaattatcctaaattactaaagtcatgtcattgtgaaatgataatactgggttgggatg<font color="green"><u>AAAGAATTAACTTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGAATTAACTTATT</u></font>tgggttctttttaaggtcatttcagtataaaaaattttccaaatgaatttctacaattttatctctattttcctcaatataat<br>gcatccagtaactgtggaaatgtgtattgcattcaaatatcaaaaagaccctcagatgtttaagtggttaatctctccttttgttcacatagagggaaaa<br>aaaagagcttctgaaacatataaaaatgtttgtccacactaaataggatggctgttattaaaaaaagttataagtattggtgaggatgtggagaaatcag<br>aatctccgtgcgctgctggtgggcatgtgaaatggtgcaggtgctttggaaaacactctggcggctccttaacacattaaaaaaagagaatcactacggg<br>a	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:COL4A2:NM:001846:4/48
0	chr10	118277154	118277469	1001033	0	+	Ya5NBC205; RIP_Alu_chr10_118_02	ACATGAAGGGCCGACTGTAT	TGCTGCTGCATTATCAACTG	SINE	Alu	Ya5	tcaaattaaactgtagttgtcccttgatagcctcagggattggttccaggctccccccacccaggatatcaaaatcctcagatactcaagtcccttatat<br>aaaatgttgtggtatttgcatacaacctacatatatgctccagcatactttaaatcatctcaagattactcaaaatacttaacataaggtcaatgctatg<br>taagtagttgctatgttttattgcttttaggtatattatttttattgttgtattgtcacttttattttttttttctgcaaatattttcgatctgcagttg<br>gttgaatctacggatgtggcactgaccaacatgaagggccgactgtattaccatggcactgaattttctgagttaaagctacttaaaaatatcaccgt<font color="green"><u>TA<br></u></font><font color="red">GGCCTGGCGCGGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGATGGATCACGAGGTCAGGAGATCGAGACCTTCCTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAATATACAAAAAATTAGCCGGGCGTGATGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGCGCGGCGGAGATTGCAGTGAGCTGCGATCGCGCCGCTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAATGA</font><font color="green"><u>TA</u></font>acaaagaatttagaatattgcagaaactcagttgataatgcagcagcagagtttgagaggtcttgctacaatttggaaaaag<br>ttctactgtgagtaaaatgctatcaaacatcattgtatgctctagagaaacactttgtgaaaggaagagtcaattgatgcagcaaacttccctgttgtct<br>tattttaagatattagccacagcctcccacctttgccaaccactaccctgatcagttggcgaccaacactggggcaagacctccagcagcaaaaagatta<br>tgactcactgaaggctcagatgatcattagcactttttagcaacaaggtatttttaaattacagtatgcacattggttttttagacataatactgttgca<br>cccttacagtgtagca	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	50	435	81	NA	intergenic
0	chr7	83750958	83751254	1001034	0	-	Ya5NBC7; RIP_Alu_chr7_083_03	TGATGGATATTTGGGTTGGTTC	GGACTGTAAACTAGTTCAACCATTGTG	SINE	Alu	Ya5	tgatgatgagcattttttcatgtttctgttggctacataaacgtcttcttttgagaagtgtctgttcatatccttcgcccactttttgatggggttgttt<br>gacttttttcttgtaaatttgttttagttctttgtagattctggatattagccctttgtcagatgggtaggtgtggagaaataggaacagttttacactg<br>ttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcaaggatctagaactagaaataccatttgacccagccatctcatta<br>ctgggtatatacccaaaggattataaatcatgctgctataaagacacatgcaaatgtatgtttattgaggcactattcacaatatc<font color="green"><u>AAAGACTTGGAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>GACTTGGAACC</u></font>aacccaaatatccatcaatgatagactggattaagaaaatgtggcacatatacaccgtggaatactatgcagccaaaaaaaggatgagt<br>tcatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcaaactatcgcaaggacagaaaaccaaacactgcatgttctcactcatagg<br>tgggaattgaacaatgagaacacttggacacagggtggggaaacatcacacactggggcctgtcgtggggtggggggagtggggagggataacattagga<br>gatatacctaattgtaaatgaccagttaatggtgcagcacagcaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatataccc	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID: 11042148</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	522	216	NA	intron:SEMA3A:NM:006080:3/17
0	chr10	92815399	92815704	1001035	0	-	Yb9NBC12; RIP_Alu_chr10_092_01	AACACCTGAGAAAGGCTCATTG	GCTTTGGAAAATACCTAAGAAGCAC	SINE	Alu	Yb9	ttctcagaaagaagcaaacattaatatgtgttgggcactgtctgatggcttggctctaagtccagggcagttgcccttgtcttctaagtactgtacagag<br>cgaaaaggcttaccaaaatccaaaccaccttgaattaaagaaatctgaatgaggagcggcaccattctttgtatgtgtgtttttaaagtctttgctgtgt<br>tactgaatgaagaaatgcagtatattatacctctattgatgtaaacgagcctcaaacatctcaattccaccctcttcctaccccacactcatcaaatgtt<br>atgactgctagtgacactttattcaaattacaaaccatagtttttgctctaaaaaacaaaacacctgagaaaggctcattgcttt<font color="green"><u>AAAATCAAGAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAATCAAGAATCTG</u></font>taaaagcaatgccaccccaatcctaaggtgcttcttaggtattttccaaagctctttgctcttttatactacagcattt<br>tcaggaggagtcattaggtactcccaaggtccaagaaataactaaaaacaaaaaataacctgagactcttttctgcattaccaccagcttcccagcacac<br>taggtcaccttttacagcagtaagcaaagcaacccatgccacaaaaatcttcacaaaccaagaaggaaaggtacaaaaagaattatattaaaacaataac<br>gtacatttgtgtgtatgaaggagggatatttaaaaatttaaaatattatatcatcacaagaaagagcagacattccttgctctgcccttgggcaaccaag<br>aaaatt	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	414	93	NA	intergenic
0	chr14	91185195	91185196	1001036	0	+	pAlu14-89175235;Yb9NBC22;1104685286116; RIP_Alu_chr14_090_01	TGCACAACTATACACCAGACACTG;NA	TTGTCTCCCATCAGTAGAACCTAAG;NA	SINE	Alu	Yb9	gtgttatttcttgctaaggtcaaggaaattgtttgatgcctggcactcaccattctcctttaacagaatgagatcatatccaggaagacctaggtggtcg<br>tagtgtatctcccgctttaccacaaagaaacaagaataggagccgtaagttccatgaagccggtctgggctgtcctattcggccttagatccccagcacc<br>tagcacaacgtgcacaggtgttacatcaactacttttacagacaatatgcaactctcagatagacatctatgagccacagccgtctcagctgaaaatgaa<br>aagtacatccatttattcattcattcatggatgcacaactatacaccagacactggggcatacaggtacagatctgttcccacgc<font color="green"><u>AAAATTGACCAAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAATTGACCAAAAT</u></font>tcctgcccaagtggaacttaggttctactgatgggagacaactgtaaacaaattaaataagacaaaatacaaat<br>gggggcaaagggttaaattccttccctcttcttttgagaatttaacctcaggttggccgggcacagtggcttgcgcctgtaatcccagcactttgggagg<br>tccaggtgggcagatcacttgagcccaggagttcgagaccagcctgggcaatgtggtgaaaccccgtcgctacaaacaaacaaacaaacaaaaaaacaaa<br>aattagctgggcctggtggcacgcacctgcagtcccagctatttgaggttgacatgggaggattgcttagccctgggaggtcaaggctgcagtgggccgt<br>gactgcaccac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	435;NA	110;NA	NA;NA	intron:TTC7B:NM:001010854:5/20
0	chr1	184937054	184937359	1001037	0	+	pAlu1-181457211;Yb9NBC50;Yb8NBC299; RIP_Alu_chr1_181_01	GTTCCACAAGTACAGGAGAAAATGT	GAAGCTCTTTAGGAAACCAAATCTC	SINE	Alu	Yb9	atgaaattagaaactacctttacaaattgggctcctgctattgcactttctacctgtgaacccagttcaaaccttcccagagattacaataaagtaaaaa<br>gctcagtagttcacagtaaaagataataaaaattactattgtcatcctagtagttactattactagagcacctttgatgatgtggccctcttacagccaa<br>cgtccatagtaaaaagaagtttttcatcaagaccagggcttgattcatcatctaactccatgggatttatcaaggcttgtattagaagccacaagaggga<br>aagtcactctttgttccacaagtacaggagaaaatgttaatctgtctcagtctactgtcttttctgtctttgtggttgactctt<font color="green"><u>AGAAATCACAACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGGGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAATCACAACTCAC</u></font>aaaatccttcatggctttgcaacatgagatttggtttcctaaagagcttcccatttctaaagtattggtttcaattca<br>caaagaccaaaggaaatagaaagtaattattgatactagcaactcctaatttgcagtagttttacttatttgaaactcctgctagcttccttggtagtct<br>ggcatgcttgaaggcattttttttcacttaaaatataaagtgatcaatatgcatttgtgcactattcatagtggaccctctttctcctgtttcctccatc<br>cccactactctggaggagctgcaatttctcacttcttacaaaagcctattcatgtctacaaatttagagctgagacaaatactataatctttacccactt<br>tctact	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	460	138	NA	intron:FAM129A:NM:052966:1/14
0	chr16	65520013	65520320	1001038	0	-	Yb9NBC7; RIP_Alu_chr16_064_02	CAGTAAATGATGGGAACAACCTTC	CTAAATGTCAAGCTATGCCACAGA	SINE	Alu	Yb9	gttttagacatgctaaaacatgttatatcaaaacatcacagcaaccctatagaagaagatgacatgatggctactatctgatgaaagaaagaaggtccag<br>gcattgctctacagcaaatcaacagtaaatagatccaaaagaggcaaccgtggaatgcactttaatctaagtcaatgcagcacctctcgtctttatgctt<br>caggtttctgcatacagattactcggagcctgccaaagagtttcatcagtctctcctgtgctttgggtttctaatatgctctaagtcaacactaggattg<br>tgttgatctgtgttagaagctaagagcttgagcaagctggagtccccattgcagtaaatgatgggaacaaccttcgaacttgccatt<font color="green"><u>AATAAACTGAACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAATAAAA</font><font color="green"><u>AATAAACTGAACT</u></font>gttcatgtttctgtggcatagcttgacatttaggccgagagtttgtaatgccaataaacagctcaggatgtgatgtgat<br>atgtgtgtgtgtgtgtgtgtttggctgtcacacaattaaaagcttaactgagaaggctaaagctttcattaaaagccatcgactttcatttatttagtgt<br>tttggggacctggagagagtacaaatcaagaataggcctccaggggacatctttttagacatgagccaatgatgctagtctaactattggagtacaggca<br>gccttatttttaggttaagaaaaaaaaaaaaacgaatgaacaaatgtggtcatttgaagaaatcagacatgtgattatttttccttcactacaaaagtat<br>ctgagaga	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	58	403	83	NA	intron:LOC283867:NR:027755:2/9
0	chr7	42549715	42550022	1001039	0	+	pAlu7-42256394;Yc1NBC1; RIP_Alu_chr7_042_04	AGTACGTGAGGTTTCTATGCCTTG	GATTTGTCCATAATAGCCCCTAACT	SINE	Alu	Yc1	caaaggaaaaccataaggaaatactcctttgcatccatgaaatggctaaaataaaaaagactgatatgcaaaatgcggtaagattatggagcaacaggca<br>gtttcatacattgctgtggggagtgtgaagtggtacagtcactttggaaagttgtttggctattcttataaagttaaacatacatctacatgagaagcag<br>caatcccactcctaagtatttaccaaagataagtgaaaacatatgtccacaatagacatttacatgaatgtttatgtaagatttgtccataatagcccct<br>aactggaaacaatgcaaatgtgtctcagtagaaaaatggataaacaatttgtggtttattcttacagtggaatactattgagcaat<font color="green"><u>AAAGAGGAATGAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAGGAATGAGC</u></font>tactgatatatgcaaggcatagaaacctcacgtactgcggactgaaagaggcttgtgcttacacaagacatataatgt<br>acaattccattaaggccaattaaggtcaaacataggcaaaactaacccagcaggatagacactgagagctagggctgcctgtgggaagtgaggagccctg<br>gcaaggacatgaggaaaccttctgaggtagtgggaatgtgcgacatcttgtttgtggtgatggatacaaaagttgacacattcatcaaagctcgccacat<br>cattcacttgatatctgcatatttcactcaaagtaagttttatttatttatttatatttattcatttatttatttttaagatacagggtctccctctgtc<br>acccaggc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	481	159	NA	intergenic
0	chr2	90003875	90004179	1001040	0	+	Yc1RG125; RIP_Alu_chr2_089_01	TGTTCTCTTCCTGTCTCCATTTC	CTGTTTCTATGATCTTGAAGGATGG	SINE	Alu	Yc1	cccaagactgaaaaactgaagtgcaaagaagaaatgtagcaaaaacctgggtccttttgctgtcaccaagttgctgcaccaacctcaaatgttccaaact<br>tcagaattcttatctctgcttcagctattgctatcatttcttgcaattgcttctaaaattattttaacttatccagaaaaaatattcaagggaaagagac<br>tgactgggttcttatttgtgtttatgggagtctaagacacaaaaaaacaggaaatcagaaaaagtgatgtcttctcctaacatctttgtcattctatgcc<br>catggttagagaaatccaaaccactttgaagaatgtataaattctgctctcttcctgtctccatttctctttttatatcttaagcat<font color="green"><u>AAAACAGCTCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACAGCTCCTT</u></font>gttcttcttaatgtctccatccttcaagatcatagaaacagaatcatggttaagaaactggaaaaaacagttggagaaaaca<br>tgaaatctagggattgtatgcatttcctctacactaatgtggtgtttgcagggttcccctgcttctcagttgtttttgctgaagatgccgactgttccag<br>ccagattcctgtcagaggttgtgtttggagggtttaaaagaaaagcttccaggggcttagggctgaattccaaaaaggatagccggagagtggctctgga<br>ttcccagcaaggagaatgccagattgagtcttgggaaagactatggacatactggatcccaggcagagacttgtagcagggagaaagcctccacagaaaa<br>tccct	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	415	97	NA	intergenic
0	chr8	15053406	15053705	1001041	0	-	Yc1RG60; RIP_Alu_chr8_015_03	TCCCACATTTCAGTGTGAATTT	GGCATTTGGGATAGTTCCTG	SINE	Alu	Yc1	cattttaggggtggtttcttctgtagtcaaatgaaaactttggcaagtcttaacacccacaatataatacaatcttagttttaacctaatggagtataat<br>aaatgatgctatgttatcatattcttttcacttgcaggatgataacatttcatgtattctagctttcatgcatgattcctaagcttactggacttttgat<br>acctgcactttttcactggggtgttttcatttgggagcttttcttgagttaaatggagacaacaggagattgtcaaatccagttttgagcaaaacaaatt<br>ttggattaagaaaagaactacatctttgtatttaaaacagtggcatctgatttataaggtggcatttgggatagttcctgccttt<font color="green"><u>AAAAAATCGAAGCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAATCGAAGCCT</u></font>aaggatgtataaaacccattataaatttataaagagtagctattagcttgtgttaagtctcatttgctataaacatacagtttaa<br>atgacttgttataaattcacactgaaatgtgggaggtaagttttttttagatgaaaaatcggttgtcgtaagaccgagtattatacttgaacataccaaa<br>tggcaacatttcagagtaatcctgcagagagacgtttagttgccttatagaagtatttcactggggtggcacactaatggaatttgagctccaatcaggc<br>acggactcttgtcaccaaagggttaaaaatacaacccatcattttagcattgtgaaagaggaggctgatgacagcaagaaacaaacttgcaggagacaaa<br>	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	551	216	NA	intergenic
0	chrX	44304924	44305236	1001042	0	-	Yc1RG99;Yc2NBC19; RIP_Alu_chrX_044_01	AAAGCACTTGGTACAGAATCAGC;GCTTAAAGCACTTGGTACAGA	CCATGGCGAAGTTAATGAGAAGT;TGGCGAAGTTAATGAGAAGT	SINE	Alu	Yc1	cctcctagacttaagcaatcctttcacttccacttcccccgtaactgggactacaggcatgtggcaccacaccaggctaatttaatttttttttttttaa<br>aaaagagacagggtctcactatgttacctaggttggtctggaattcctggcaacatctggaattcctggcaacaagccgtcctcctgccttggcctccca<br>aagtgttggaactacaggcgtgagctactgcacctggctgcctatgtcttgtaaagcattaccctataaagctattattaaattgattacatgtcttgcc<br>actgatagggtttgataaaagggatttaatgatacatcccctccaaggttctcataaagcttaaagcacttggtacagaatcagctt<font color="green"><u>AAGAAATGGTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGGTGTT</u></font>attacttctcattaacttcgccatgggctgcattactagtaagtggcaaaacctcaattggaatcaagtttgta<br>actgcagttacagaattccttctcttcttgcccaaattctagcctcaaacagtgaggggacaggctccttatattagctgggagttggtccctcatgtca<br>tgtcccagactccttgattctcacaactctgcctgctcttctaactctactatcttcatcaggcacaaatcatgtgaacccatcaacatttgaaatttga<br>cattttaatccttaaaccaatgcacagaggactttcataattatgatttgttttattaagttgtcatattgtctttcagatatggcgcttctgggataac<br>aggaactaggtaa	UCSC;UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA;NA	60;NA	390;NA	64;NA	NA;NA	intergenic
0	chr7	104615215	104615534	1001043	0	+	Yc2NBC5;Yc2NBC1; RIP_Alu_chr7_104_01	ACATAGTGGGCATTCAAGAG	CTTAATGTTTCCATTTCTCCA	SINE	Alu	Yc2	tagagttagggctgactgagttggggagtgggtggagtgtaaaatggcagcttgaccaggctgggccatagccactcatctgaccactttatctctcacc<br>tcttcccccactttggccttgggaaggaggcatcaaggagagtgtgaaggaccaaggaatgctagggatagttggtggccacttctcgacagtaaccctt<br>tacctaatgtatcccagctgatatttctcaaaacatgttgctatgcctcactcattaggttccactccatggggacagggagcatgtgtgtcttgttctc<br>aatacctgacacatagtgggcattcaagagtacttgaaggaatacagggaggaataattgattttcataactatcttagggatt<font color="green"><u>AGAAAAATCAAATGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATCAAATGTA</u></font>actaatttccattttacagatggagaaatggaaacattaaggttttaagttgtttgggaggccg<br>aggcaggcggatcacaaggtcaggagatcaagactatcctggccaacatggtgaaacccccgtctctactacaaatacaaaaaaattagccaggaatggc<br>agcgtgcacctctagtcccagctactcgggaggctgaggcaggagaattgcttgaatccaggaggcggaggttgcagtgagctgagattgagccactgta<br>ctccagcctagtgacagagcgagactccgtctcaaaaaaaaaaaaaaaagattttgtgggggccagttgcagtggctcatacctgtaatcccaacacttt<br>gggaggctgaggcgagtaga	UCSC	<UL><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID: 11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr12	29280252	29280550	1001044	0	+	Yg6AH98; RIP_Alu_chr12_029_02	GCACCATCGATGAAATAAAT	ATGGTCAGAGAGCAGACATT	SINE	Alu	Yg6	ttttcctaatctagaagcttatattggggattttagatctttcttctttcctaaaatatgcattcaatgccataaatttgcctgtaagcactgcttttgc<br>tgcatgccacaaactttacccagttgtatttttattcatttagttcgaaataatgttaaatttctcttcaggtttcttctttgagccatgtgttatttag<br>aagtgtgttgtttaatctccgggtatcttggcattttccagctacctttctattattcatttctagtttaattctactatggtcagagagcagacattgt<br>atgatttctgtaccttgatatttgttgagtgtattttatggcccagaatgtgttctatcttggtgaatgttccatatgacctt<font color="green"><u>AAGAAGAACATGTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAGAACATGTATTG</u></font>tactgttgttggataaagttgtccatagatatcaattatatttatttcatcgatggtgctactgagttcagatatgttcttatt<br>tattttctgcctgccaaatctgtctatttctgatagaggagtgtcaaaatctcttaactacaataggagagtcctccatttctctttgcagttctatcag<br>tttttgcctcatgtatttttacactatgttgttaggcacaaacatgttaaggattgtcatgtctttttgtagtagtgacattattattattatctaatat<br>ccctctctgttcctgattaactttccttgatctgaagtctgctttatctgaagttaataaagctaataccctttcttttgattagtgtttgcatggtat	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	497	181	NA	intergenic
0	chr14	45888166	45888467	1001045	0	-	Yi6AH110; RIP_Alu_chr14_044_01	AATCCTCTTACTTTTGCAAGATGC	TTAGTCTCATCTAGGGATGCCAAT	SINE	Alu	Yi6	catacagaaagacataaaaagcacaccagattggctacagcttgagactagcctcacaaatgctttttttcaattaatcaaaattttacagaggatataa<br>acaggaatctttattattcattcaacaggtttgcacagagacagagaggccagaagtctaactggtaagcaattcttacctttttgccaacatgtcaggt<br>tttggagttcctcttccctgagtggccctagcaaccactgagaggcaagctgcatcacaatggaaaatcacagaaccacaagcaaaatcctcttactttt<br>gcaagatgctacccagggggtggcatggggtaaccaaattaacattttccattctggccagagcaaaatatgtgtgctttaaat<font color="green"><u>AAAAATATTGAAATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATATTGAAATCT</u></font>ttttagaagcttctgcatatcaattggcatccctagatgagactaatttgggagccatctttccttttttactttttttttt<br>ttaatgcacttcaatgcactgttgttcatttggaatgttccactgtaagttacctttagtaatgttttgccatttccgtaagactttgctccctcccagg<br>cctaacatataagccagaaggaactcagttttccagaaattaagaattctatttttaactaaaatatcggctttgctttcaggttccgttagtgaactta<br>gccaatgattttttttctacctaagcatgcaagaaaaatgaaacaaaggggtagaacacaaaaatccctgtgaattttcaaaagccaaattttacagccc<br>ct	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	479	161	NA	intergenic
0	chr15	34741757	34742019	1001046	0	+	Yi6AH65; RIP_Alu_chr15_032_02	CAATGCATGTTTAACCTGTG	TCTACCATTCACAGCAAGTG	SINE	Alu	Yi6	cagcttttatattgcagtttttgtagttatgttttttattctgttcccaggtatcatagaaatggagttcctagttctagagtatccttttctataaata<br>gagtaaaatgcagtttatttaataagagatgttggcactttgggcagaaagggagtggtaggcacgtggtacttctctttcatctggacatattccttaa<br>ttttaccttctttttttcctttctgtgccatgactcctgatcaatcaaatagacaactgaaattattcacagatctgaaatgttttattatttctgttac<br>cagatttgtagctcttcaatgcatgtttaacctgtgcacatagtctaattttcactgctggtgttgacagaaaaaaatatttc<font color="green"><u>AAAAATGGAAGCTGAGG<br></u></font><font color="red">GAGGCCGAGGCGGGCGAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGG<br>GCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATTGCGC<br>CACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGAAGCTGAGG</u></font>attgtaacataatgtaggta<br>tataatggcaatggcactatttctgcttttcctgtgctttgggtctacctgaagagtagtgtgcacttgctgtgaatggtagagcccacctacattaggc<br>tgatgatttattgttgaagtcaaaaaaactagtgaaattttactgagtagactcttgatcagcagggtagcagatgtctcccagaatattttgcttctca<br>aatttacagggcttctacctttcatagaaaaccatcctcacctctgactcatgtgacttatcttcgggtactgccttctcttggcagtctttgggactac<br>ctcaaagcagaattcatcctaccctgctcagtgttccctcgactcttcttccattatatggta	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	467	187	NA	intergenic
0	chr16	82482535	82482847	1001047	0	-	Yg6AH55; RIP_Alu_chr16_081_02	ATGGCAAGGAATGATATGAG	CCTGGAATGTTCTTTCCTTA	SINE	Alu	Yg6	tctataaactctctattggactgtgagtcccacattagatcagcaacatatgagcagcatggttccacccctacctgttcatttcaatcattcattcctt<br>ccttcattcatttgtttattcaatagatattcactggtcggctcctatatgcaggcattgttctaagtactagacatacagcaggaaaccaaccaaccaa<br>acaaacaaaacctgtcctaacagagctcacattctctctggaggagatagatagtacacaaatacttgtcatatgtcagatggcaaggaatgatatgagg<br>aaaggcagggaagatagacagatttctaggaataagtaaggcatggagcatgcaattattaaaatgtggcactggaagtcctcatt<font color="green"><u>AAGAAGAGTTAGGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAGAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAGTTAGGG</u></font>aggtgtgcaagctatgagattatctaaggaaagaacattccaggcaaaggcagcagtaagcacggctggagca<br>gggtggacatggggagagaagcaggagttgaggtcagggagttcatggtaagctgaactcatggcctatgcctgtgtctatacaatacctgatacatgga<br>tgaaagaaagtaaaaacataccattgatggaatgttctcatccctctggttcacgtaaacagatagaaagacaaggcatggtttagcagaagatattacc<br>aatacgatatacctaacaacttgtattcggaatatattaaaagctctagaaattcaataagaaaagggcaggcagcctaataaagaaatggcaatagact<br>tgaacaaacactt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	492	165	NA	intergenic
0	chr1	79401527	79401830	1001048	0	+	Yi6AH97; RIP_Alu_chr1_079_02	TATTGTCAGCCAAAATCCTC	CCTCATATGAATATGGATGGA	SINE	Alu	Yi6	tcaatagctgaggcaaaccaccatggctcacgtataactgtgtaacaaacctgcatgctgtgcacgtttcccagagttaagcaaaattaaaaaaaaaaaa<br>acaaacctactttaaaaaaatctctatttttcttcctcacacaatcacaaattttgtctcatgatgaagaatatgatggattattgaggaagaaatatta<br>aaggaactgcaaatatagtgactttgctgtataaggagtagtaaaatcagagctcttttgtatattttcattagaatctcaacaatttcagacagtaaca<br>aaagttggaggtaagacaaggacccagatattgtcagccaaaatcctccccaggtatttataacagaatggaaatctcaagt<font color="green"><u>AAGAATATGGATATTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATATGGATATTCTG</u></font>tatactgtacatacatcaaatgtttttataggaaaccacatgttacatgtacatatgacataatcaaatgcatgataa<br>atatttattgcaaattcattgatatattgtctgttagattgttaaagtcctaccatttgaatcatatgcagcttttctctttggaaatatatttatgtag<br>tctccatccatattcatatgaggatgaatatgtttcatgttatatgaatcaaaaaagaaaactttgagagctgaaacaaaaccatgaaaataaaaaaagt<br>gaaattactttaatcaatatacatcataaatatattagcttagagacaatttcatccatcattattgtgttttaaattatttataacaagtagagtgaac<br>attc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	595	273	NA	intron:ELTD1:NM:022159:7/15
0	chr20	57723455	57723778	1001049	0	+	Yg6AH147; RIP_Alu_chr20_057_02	GCAAAGTCCCTGTTCAGTCC	CATGAGACCCAGAGTCAGCA	SINE	Alu	Yg6	tattagatcaataagaaagtatgactacatcatggaccctaattagaagagacgtcccttatactctctgaaatgcttgagaatgttctcctactaacct<br>agagcctgatggggccattgacgctaattgttaagtgccgttggtcaaggccaatgcatagtcttcgtttagttcctaagtcatttgtggtcggcccatc<br>caagacagggacacggacaatctcatcagagtaggctgggagggtttccatgatggaatggggctggcctctctgttgaggggggatatccaaggggtgc<br>acatgagctctgaggaccagtggcaaagtccctgttcagtccttgggaagcatcaccactgctacatttctgatgttctgaagatgggtt<font color="green"><u>AGAACAGAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGTGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACAGAGC</u></font>gtgagagcaagcagggtgctgactctgggtctcatgtcttgaggctcaattccatcctgtcaccca<br>gccaggagattcagaggtcctgcagcctcctacctcagacccacatacctggtgtgagttctgccctcctgaccacaacacccctgcaccttggacacag<br>cttaccacatccttccccagagcatcttgtgccttggagagcaggtgcagttgcagcgttctgggctgcgggcactcgagttcagccctggccagaggct<br>gtgaggggcagagccaggggatggtgtctccattggtaacgagggtctccatcccttccaggctggccgtgtctgtggccacagatgaataggatgggtg<br>cccatcttgatgggtcagacaagg	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	448	114	NA	intergenic
0	chr2	182355984	182356286	1001050	0	+	Yg6AH86; RIP_Alu_chr2_182_01	AACAAGCCTTGGTAGTGAAG	ACCCAAGTGTCCTCTGTATG	SINE	Alu	Yg6	catactaataattttgatttatactaaaagaatgaaataaaatgttcagataagaagtaaaagcaatcattaaatacctatgttctgtatattgtgtccc<br>aaattaagttgcataggcttggaaaacatttattgtatatatttcaaaacatatctttctcatttgaataatgatagctagaactttattatataacaga<br>tccaagcgtaatccaggaagagtctgaatctatatatgtgatagccagagattgaatatacccaagtgtcctctgtatggaaaaaaatttatctgggcct<br>ttttaatattttggctgaaaaggctcatctgtatttttcctaaatatttgccttaatctagatcactcttgctaataacaggtactgt<font color="green"><u>AAGAATTACATC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACAAGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATTACATC</u></font>aaccacttcactaccaaggcttgttatttttttcatgtgttatgaagaatcaatatataggaaattctagagatgtaaccacagt<br>ggtggaagtataaacccagccctgattaaaataaattgctgtcttcccttcaatggctataaaatacttttccccactccttcttctcacatccctcttc<br>tcctcctcctcctctttctcttccttaccattcctgctcctctgttcctgtatgtatatattctgcacaaatctgactccagttattccaaaccaattgc<br>cattcttcacatgtgccatgctgcctattgcttccctgcccttgcacaggcatttccctgcctctaaattgcatttccccttttcttcacctgtctatga<br>cct	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	481	166	NA	intron:ITGA4:NM:000885:10/28
0	chr4	101244852	101245110	1001051	0	-	Yg6AH28; RIP_Alu_chr4_101_01	TGACCCTAGTTTGGGTCTAA	TCATGCCTTCTCCATTTAGT	SINE	Alu	Yg6	ttctagtacaagaaatgtagttccaggcaaagcatatttccttaggttaaacatataaaaatctgaatttttagtaaaaaaaaaacaataataaattgaa<br>gggtaatatattttgtcagtattttttactataaaatttatttaccttacaagctgtatgttaccactgtcatctgcttgatttgcaagcatccagctta<br>ggtgtcatttttccagaatagagcgttagtatgaaagtgccctgtgctcatgccttctccatttagtaggcaagaaaactaccatttccaccttaaatct<br>caggattattttaaattaaaggtaattaaaaaatgcaaagtgtcttgaattcctcaatagaaatgtgctacatgactgtgaggttcataattttt<font color="green"><u>AAGAA<br></u></font><font color="red">GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG<br>GTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAA</u></font>tttaggcccctttttagcagcctaatatctgtcatg<br>agaagagaaaaggattgatttagacccaaactagggtcattatgggcagcagtatgatcatttgactggaggtttcagaaattcttgtttgaagggtaag<br>aatgcagaactgccactgctaattagataccaatataacaatagaaaacaacagctgtgggccaggcacagtagctcatatttgtaatcccaacactttg<br>ggaagcaaaggtggcaagatggcttgaggcctggagttccagataagcctgggcaatatagtgagaccttgcctctagaaaaaatttaaaaattagctga<br>atgttgtgacacgcacttgtagttccaaatactcgagagaatgaggtggaagatttgct	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	492	218	NA	intergenic
0	chr5	20018911	20019206	1001052	0	-	Yg6AH35; RIP_Alu_chr5_020_01	AATACCAAGGCACAGTTCAC	CAGGATTTTGTTTCCTATGG	SINE	Alu	Yg6	ccagcaagaggcaaattggcccccatgatccaatcacctcccacaaggcccttcctccaacattggggggttacaatttgacatgagagttgagtgggga<br>cacaaatccaaaccatatcaatatgctattttataatgactctgtgttaccatatatcatccgtaaaaagtatgcagatctcattaatttagtagtcatt<br>cttctatgtcaactgtaagcaaacatttcttaacattagtgagtctattttgtgctttaaaagatagtatcattcttattttattgtctcactataagta<br>ctacaattctcactccttttgtagtgatttcatggtgcttaattccatgaaaataccaaggcacagttcacattctcaggttcatt<font color="green"><u>AAGAATGCCTTATT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAGA<br>ATGCCTTATT</u></font>ctcagagaactctcttaagggttttgtatttaaagtaccacaactgtttttaccagatctgaatgttccagttattcatttttattccat<br>aggaaacaaaatcctgattcttctcactttcaatattaattgaatctataaccttaaagaattatttgggaagccaattctataaaagtcatgcagtcat<br>agatatctcatattttttatcattttcttaagaatcttcacacccaaatatcaaagattgtttagaatacaaaatggcatactttatgtacatgaacttt<br>gtgtcaggctcattcaaaagcaaagctcaatgagggaaggttctctaagtggtaatgcttcacatgtttactccacactagacaaaagaatcttgt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	465	155	NA	intergenic
0	chr5	99759477	99759778	1001053	0	+	Yg6AH30;pAlu5-99790231; RIP_Alu_chr5_099_03	TCCCTTTCTAACCTTGTGAA	TACTAGGGCCCATTTTATGA	SINE	Alu	Yg6	ttacttcttctcacctagaaaccatcaagctttaaatggtgtggcaaaaggagctgaaaattaaactgaccttctactgcatacccttaaattgacccag<br>gaggagccctagctgctattcccatgccacgcccctctccagcaggaagtagccagagtaagtcgacgcccaattccccgtaacagcagttaggaatttc<br>attcctgaggggggtgtttgttataggagataaaaataaattatttgggtagacagagtaaagagagtccccggcagaatactttccttctaacaaaaag<br>cagctcagaaatggctccctttctaaccttgtgaagttcaaagaaatcatttctcttctaacaaagaacaacctgaaaggctgt<font color="green"><u>AAAAACACAGATAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAACACAGATAAAC</u></font>aacttgggcacagaaagaggtgggggagtctcctcggtaatcaccaaacttcacattcataaaatgggccctagtaaaaaca<br>atgggccttaataaccacattcctttccctttaagcacactaagataaggaagctaaaagcaggggggcaggggaggatccctgcagctgtgcaagaaga<br>tgagaagatgtctggaacagacacagaaactctccctcccagataagcaaaatagagcagcagaaactaagagtctacctatgtaatcaaggaattgggt<br>gagagctgatagaaaactctgtgctatgcacatagcacacctgattccaactaaatcttcaggccttaggaagataagacacccctcctcactagcccat<br>tt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	479	161	NA	intergenic
0	chr5	177128917	177129208	1001054	0	-	Yi6AH63; RIP_Alu_chr5_177_01	AGTAGTGATGTGGACAGTGAAGG	ACCAGATAGCCTAAATCATCACTC	SINE	Alu	Yi6	catggtgaaggtctctgaaatgtcttctatgcttttcccccattgtcttggctattagcacttggcacctttttacgtatgcaaatttctgcagcctgct<br>tgaattcatcccctgaaaatggccttttctttccaggctgcaaaatttccaaacttttacactctgcttcccctttaaatataagttccaactttaggtc<br>atttctttgctcatgcatatgagtgtaggttgttagaagcaactgggtcacatcttgaatgctgtgctgcttagaaatttcttccaccagatagcctaaa<br>tcatcactctcaagttcaaagttccacagatccctatggcaggggcacaacgcagctatgcacccaggttctttgctaaggtataac<font color="green"><u>AAAAGTGACCTTT<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTGTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCAAGACTCTGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAGTGA<br>CCTTT</u></font>gctccagttcccatcaagttcctcatttgcatttgagacctcatcagcctggccttcactgtccacatcactactggcattttgatctaaccatt<br>caaccagtctctaagaagttccaagctttccctcatcttcctgtcgttttctgagccctccacattcttgcaacctctgcctgttacccagttccaaagc<br>tgcttccacattttcagctatctttacagtaatgccccactccttggtaccaattttctgtattagtctgttcttgtattgctataaagaaatacctcag<br>agtaggtaattttatttattttttaaaatttatctatttatttttgagacagtctcactctgtcacccaggctggagtgcagtggcatgatc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	494	190	NA	intergenic
0	chr6	163814231	163814232	1001055	0	+	Yg6AH99;1104685087387; RIP_Alu_chr6_163_01	CGGATAGGTTCTTGTTTGAG;NA	GCAACATTTAGCATTTTCAC;NA	SINE	Alu	Yg6	cagtgtctccatggaaacagctgggggctggtctgccagttcctatcatgtttgagaaccatgtgtaatcactttggaataggcagtatttttaaacttt<br>gcagtgagttgggtgaaagcttcagggatcaaatatttgaaaatgtctgaggagtaaaaatcatgccatgagataaagctttgtgagaaagagacaacgc<br>aaaacggtcacttttaatatttcaattctgagttaagacttcatatagatattttcatttattccttgccattttaatacagattcggataggttcttgt<br>ttgagaaaagaggttctgcaaagcttttctacttacatgaaactccatggtaatgacgctgtactggaaaaaagagaggttagat<font color="green"><u>AAAAGATGAGGTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAGATGAGGTCTC</u></font>caagttttagagtgaaaatgctaaatgttgcttagattttgtgtgtatttagttgtatttaaaaaggtaaatgaga<br>aatcatttgtatactggtttctgaaagatatatttgagtttattaaaactttcagattttttgtactttactcaatgcatgactatttcactgaaattct<br>cacgtttttgttttggtgtcaggagaggcactgttttgacagtatttgcacatgggatttacctccatccttggatatatttctgtgacaccagagcagt<br>ttccatgaaggccctggaagggaaattttcaatcaacaaacagcaaaggatcccactgaccatgggcacactttttttcttaacaaatattattgctgat<br>gtcttatca	Other;Venter	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	470;NA	146;NA	NA;NA	intergenic
0	chr6	38922199	38922502	1001056	0	+	Yg6AH160; RIP_Alu_chr6_039_01	TCAGAGGAAGGATGGGCTTA	TTCTCCCCTTGATTATTGGTTT	SINE	Alu	Yg6	ataacatacggatgggacagaatcaataagtttttgtagaaaaagaggagaagggaaactttggttatagatattgtcttgtactggtcaagatctgtag<br>tgagaaatttggagcagataaactctgcacagagtactgggtacatgggcaaagtggagaaagcagatgggtttagcacgagagcctttctaggagcctg<br>actactggaggagggaggtctcagaggaaggatgggcttaaaaagaacacctaaaaacaaacgaaagagaacaaatacataaaaccccacaaccacacaa<br>aagtagtagtgggaaaactgatataacaatatgtacagatgaaacattttaacattttaaataataagagaatggctcataattatagt<font color="green"><u>AATAAATTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AATAAATTACA</u></font>gcatctcattaaaattggcaaatttatagaaacatatgaatttagaaaatttcctcagaaaaggtagaaaaccctgaataaacca<br>ataatcaaggggagaaaaagtagaagttttaaaattattacatcagcaaaggctctaggcttggataattttctgataagtcctttaaaactttcaagga<br>ctctcatatgctatattctgttccaaaagatggaaaaagagaatacattttcctttttcttttgagacaggctcccactctgtcacccaggctggagtgc<br>agtggtgcaatcatggctcactaaagccttgacctcccaggctcaagtgatcctcctacctcagccttccaagtagctgggactacaggcacacaccact<br>aatc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	596	281	NA	intron:DNAH8:NM:001371:80/91
0	chr6	28972222	28972315	1001057	0	-	Yi6AH86; RIP_Alu_chr6_029_03	CCATTACTGCGGTAGTCTTC	CAGCTCTTATTTTGGGTGAG	SINE	Alu	Yi6	cttgggaagatgacctataagaaaacacttgaaggaggcaagattattagccatggagatcgcttaaggtgaagggagcagccaatggaaaggccctaag<br>atgaaagagaaggaaggtcggtatggctgaagattgagggagtgggagaagagtagaaggtgttgagaatgacacatcctgtagacttgtatgccactct<br>taagacttcagctcttattttgggtgagcaggagaggaagttagaagtcacgggcacattcagtagggccttgtatacctcggtaaggacttcaggtttt<br>attttaagtatgaaccactggagagttttcagcagagcgatgaaatgatccaactcaagttgtaaacggactactcagactgccctatt<font color="green"><u>AAGAAAGGAGG<br></u></font><font color="red">TGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAA<br>GGAGG</u></font>aaggcaaggattgaagaaaggagaccagttagaagactaccgcagtaatggaaaggaggggagatagcaggtgatggtggctcagacaagggtgg<br>tagccgttgagattgtattctggatatgttcacattttcagtttgacttcgtgcctcaggttctcagtgactccctattttttcctgtggtcacattcct<br>cttttcccttcaccaaatatgcagggaaacaagatgtgagatcacagcggtttagtgttgctaatgaaccccaaatccagggcagtgtttgacacattaa<br>gccaaacagtagcggcactgtgggtcaagaagggccctttggctggcaccaccaaaacatgtgttctccaaaggaggctggcatcaactggagc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	358	243	NA	intron:ZNF311:NM:001010877:1/7
0	chr6	168059227	168059536	1001058	0	-	Yg6AH133; RIP_Alu_chr6_167_01	GAAAGAATCGTATGCTGAGG	CAGACCCACTTGCTGTCTAT	SINE	Alu	Yg6	tgtctcactgctgagtcaacctcaatggcttccagctctcagtctgaaatgacagcccaagctggggcccgcactccggcactgcagccagaagaaggga<br>ggtaagccctgggagccactcttgaggacacccctgcacagtggtacccctgtatccctggggcgtgtgttccaagacccgctgtggactcctgacacag<br>ccatactcccagacccacttgctgtctatcaggacacgcttccgtgcatgtcttccacccacaaactcaatgccttttttaacttaactaagcactcacc<br>atgcactgctgctgtagcttttgtcttttgagatgcaacagcaaaaccaacacaaatttcttttccttctttatagtttcactgat<font color="green"><u>AGAAGAGTCATTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AGAAGAGTCATTCC</u></font>tactgtagatctcagcagcctcagcatacgattctttcctttgcttattgagaactgacaccttttcactttatggc<br>ttcttcttggcagaaccaaatggccagtctcttgcggccattactgagtgaaccaggagtgacttgaacaatgggagacttgaactgggagactctgaca<br>gttgatctgataaccaaggtgactacaaagtgactcacgggcagggaacgtgcacagtgtggatccgctggacaaagggaggactcatctctggggaagg<br>agatgagggacagtgagagtcctcatcacactactcagaacagtgtgcaatttaaaacttgtggattgctgatttctggaattttccatttaatattttg<br>tggcctcag	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	553	229	NA	intergenic
0	chr9	6752051	6752356	1001059	0	+	Yg6AH138; RIP_Alu_chr9_006_01	TTGTTTGTGATACCAAAGGAGCTA	CTGGTTTTGAGAACGTTACCAATTT	SINE	Alu	Yg6	caactttagctgaatgatgagatctcaattatgcataatcagaacacttaaggaagatggaacaggatagttgttcacaatagtcagctcaaggccccta<br>gaaaatgtattataaagctgcaggctgaaaattgagctcattgatcagacagaataccttctggaagaatttgagtagaaaagaaaaatcagagcaatta<br>ggtagggagaaagggaaatattaaaatcagtgaatttgataaatttgaggtaaactacagaatgtgaaaatatcttacaaggcaacattttgttctgcag<br>aagaaagcccatgacaattaggttcttgtttgtgataccaaaggagctactgctggagagattaagcaagtcacattcctgagtt<font color="green"><u>AAAAATTAAGGAGGA<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAATTAAGGAGGA</u></font>acaggtaaaacaaaaaattggtaacgttctcaaaaccagggattttttttttttttccggtggagtttcgctcttgttg<br>cccaagctggaatgcaatggcatgatctcggcttactgcaatctccgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggttta<br>caggcatgcaccaccatgcctggctaattttgtatttttagtagagacggagtttcaccatgttggttaggctgatctcaaactcctgacctcaggagat<br>ccgtccacctcgccttccctggaattacagacgtaagccaccgcgctcagcctaaaaccagggattgttaaagcaacttccaaaaagttatattgtggtc<br>tctttc	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	435	114	NA	intron:KDM4C:NM:001146696:1/18
0	chrX	96194674	96194962	1001060	0	-	Yg6AH118; RIP_Alu_chrX_096_01	CACACACACACACAGGGTATAAGA	AGTACCCCATTTTTACAAGTGCAT	SINE	Alu	Yg6	cccagttaactagattctaaaacttttaactttaatggttattttcatactcatttattttgaaggatgacactactagacataaaactgaaatattagc<br>acttttattttcttagatgttaagatcacatttattagtagataaatactgtaaaaagagaaataacagtaaaaccttacttaatatgcacaagataaaa<br>cctttaaagttctatcccagaatcttcagtgctttttctgtgatatcactatctagcaaagaaaattcattgcagggccagtgcaatctgttgggttcat<br>tgctaccaaagtcctgtcgctggagtaccccatttttacaagtgcatctgtctcttctggccaaatttaaaaaatgaacacctttt<font color="green"><u>AAAAAATGTTACCT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAA</font><font color="green"><u>AAAAAATGTTA<br>CCT</u></font>aaagagtcaaactcttataccctgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtatatacacacacacacatatacacacacacacacatat<br>atatatatacatatatacatacatatatatatacatatatatatatacatacatatatatatacatatatatatacatacacacacatatgcatatattg<br>cttaggccccactacattgttcattttcctttaatatccgattcaaattataaatatagtactctcagaactgcctcttacctgatataataatcatttc<br>tgataagcaaaaaatgttgtagaatagataagaagtaattttcagcagcagtgtccttcagcatattatatagaagatggtagacttca	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	416	113	NA	intron:DIAPH2:NM:006729:12/27
0	chrX	31577479	31577780	1001061	0	+	Yg6AH38; RIP_Alu_chrX_031_01	TCAAACAGTGTGAGGGTTCG	TTTCCACCTCCCTACTTCTCAA	SINE	Alu	Yg6	ttacaggagagacaaaattaccacatcattcccattatcagaagaaataattcaaattaagaaaaattagaaataaaaatgaagagatgacactgaagaa<br>tatctcaccactggaagatgactttcatctacagtgatctctctataaagcaaagatacttttcagctattattcagtaagtgagtccaacagtttcctc<br>tgatattgtgaatttaattagtaggcaatttgctcatgaaatcagaatctagcccttcccttgctgggttgctggatctgtgtattcctatattcttctc<br>tagctattgcctcatttctcaaattcctttcatgtcttcatctccattccttatttccacctccctacttctcaactcaccaccat<font color="green"><u>AAGACTTCTTGGCT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGACTTCTTGGCT</u></font>ctggttccagtgtaaattctttgattgcatcatcatgaacctcttacttgaggttagggctcagcgccccgaaccctcacactg<br>tttgagggtcaactgtataacactttccctaattcccaactcaccacaataagacttcttggctctggttccactgtaaattctttgaggcatcatcatg<br>aacctcttacttgctgaaaactccaagaaatagtgttcacacctagctttttcagctgcctggtagtccctgacactgccagccacttccttgtctttga<br>gactttctccttgctcaggttcctagtcattcttctcctttgtagcctgccattttctggccacctgcttagctcctacaggaaacacttcataagtgtt<br>gt	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	452	136	NA	intron:DMD:NM:004022:12/34
0	chrX	65527063	65527355	1001062	0	-	Yi6AH124; RIP_Alu_chrX_065_01	TGTCATTTGTTTGTGTCCTCTCTTA	ATAATAAACAGAGAGCCAAATCGTG	SINE	Alu	Yi6	cctttgaagaccagcgcaagacaaggatgccctctctcaccaatcctattcaacatagtattggaagttctggccagagcaatcaggtgagagaaagaaa<br>tacagggtattcaaataggaagagagggagtcaaattgtctctgtttgcagatgacatgattatatatttagaaaacccggtcatctcagcccaaaatcc<br>cctcaagctgataaggaacttcagcgaagtctcaggatacaaaatcaaagtgcaaaaatcacaagcattcttatggaccaataataaacagagagccaaa<br>tcgtgagtcaacttgcattcacagttgctgcaaggagaataaaatacctaggaatacaacttacaagggatgtgaaggacctcttt<font color="green"><u>AAGAACTACAAACC<br></u></font><font color="red">TGGGCCGGGCACAGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAAGTCAGGAGATCAAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTGCCAGCTACTCCAGCTGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTTCGTCTCAAAAAA</font><font color="green"><u>AAGAACT<br>ACAAACC</u></font>actgctcaagcaaataagagaggacacaaacaaatgacaaaacatttcatgctcatggataggaagaatcagtgtcgtgaaaactgccatact<br>ccccatactccccaaactaatttatagattcaatgttatccccatcaagctacaattgactttcttcacagaattagaaaaaaaactactttaaatttca<br>tatggaaccaaaaaagagtacatatagcctagacaatcctgagcaaaaagaacaaagctggaggcatgaccctacctgaattcaaactatactacaaggc<br>tatggtaaccaaaacagcattattctggtaccaaaacagatatatagaccaatggaacagaacagaggcctcagaaataacaccacacatcca	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity.Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID: 12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	466	159	NA	intergenic
0	chr1	87837553	87837830	1001063	0	-	Ye5AH20; RIP_Alu_chr1_087_01	GAAATGATTCCAGGTTGAGA	CCGGATGGAAGATAATGTAA	SINE	Alu	Ye5	caaggttattccattttctccagccaatgacaggaacggatgaagttaaagattgggggtgggagggaattaacaaggtagtaggagaaaccaccatagg<br>atcctgcccaggtaggatgggaaataaagcccagaaagggcaggaggactgggagagtagacagggtcaaaggaatgactgtgactctgaggcttggtgg<br>gagcagcctttgcaggagagaaggaaaggacaaggtggagagtaagagatggtgactagggacgggaatgctgctgctggagttttcaaagcagaagcag<br>ctctgggtgtagcagaacagacaggagaccaggaagagagggactggctgagagccggatggaagataatgtaatcagaggtcatgaaag<font color="green"><u>TGGTGAACAG<br></u></font><font color="red">CCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTAAAACCCCGTCTCTACTAAAAATACAAAA<br>AATTAGCCGGGCGAGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGC<br>CGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAGAAAA</font><font color="green"><u>TGGTGAACAG</u></font>aaaccccaaaac<br>acagacataaactgctttctgggcccaagacccacgttaatgaaaattaacagccttaaaatttatcaatgggtcctgttgcttgcaggatggaattcta<br>actcctcatcacataagacctttatgatctttcagtgtcacctcatctcccagcacaccgccacccaggcccttcactcttctactgaaccactttcttc<br>catgtgcacacgctgatttctcaacctggaatcatttccctacacctttcctcaaaggactgttaatgagttttcagaggtaagccctattcctctcctc<br>tggagaaccttccctgagtgcccagtctgagttgaatgtcccccttcccactacccaatatctccccctgaactccag	UCSC	<UL><LI>Salem AH, Ray DA, Hedges DJ, Jurka J, Batzer MA. Analysis of the human Alu Ye lineage. BMC Evol Biol. 2005 Feb 22;5(1):18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15725352">PMID: 15725352</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr11	62189930	62189931	1001064	0	+	Ya5NBC135; RIP_Alu_chr11_061_02	AATTAAGCTCATGGTAACCAGCAC	GACTCTCCTCTCTGGATTAGAAACAG	SINE	Alu	Ya5	agactcgggcaatccacaaatcttacactctagtccatcgatgaaaaggctgctatctctcgctgatgggcctggctgtttgcatctgggcagacccagc<br>cagccagagggctagccagcttggaaaggggcctggagacatgtgccttctctcctctgagttgcagcttctgcagagatctgcccgagctttcagcgtg<br>tcatcgaaaccctcctcatggacacaccctccagttatgaggctgccatggaacttttcagccctgatcaagacatgagggaggcaggggctcagctgaa<br>gaagctggtggacaccctcccccaaaagcccagagaaagcatcattaagctcatggtaaccagcacctttcacgtcacactggtt<font color="green"><u>AGAAGTGGCTTCCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGCAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAC</font><font color="green"><u>AGAAGTGGCTTCCCC</u></font>aagtggggctgcaggattgccccagttttcagacctgtttctaatccagagaggagagtcacagtgccactgtccccaggc<br>aggcagcacagtgatctttctagacatctccttcttttttttttttttttttttgagacagagtctcgctctgtcgcccagactagggtgcaatagcacg<br>atcttggcttactgcaacctccacctcccaggttcaagcgatctccggcctcagcctcttgagtagctgggattacaggcacccaccatcatgccgagct<br>aatttctgtatttttgtagagatggggtttcaccgtgtttgccaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccaaagtg<br>ctgg	Other	<UL><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB, Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID: 11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	436	117	NA	intron:SCGB1A1:NM:003357:2/3
0	chr3	98726703	98726704	1001065	0	+	Yd3JXd19; RIP_Alu_chr3_100_01	ATCAGGTGCTCCAAATGTCTAGT	GCATGCCTCAGACACTTGTAAAT	SINE	Alu	Yd3	tgggggcaatatgggttggcaggcacaaacactagtgctgggggagaatcccatgggtgaccaccaggttcccagaggtgtgcctaggcatggagctggg<br>aaacctcctccctggccccaagttatctgcatggggaggggagtcagcctaaactcctaatgtaagagagtggagctccagatgcctggagatttgcctg<br>agcatggagcaaagaggaccccacttcacaacagtctttgtataggaaggactggctgggtcaggctgcttattcaggtgatcaggtgctccaaatgtct<br>agtgatctgcctgggtgtagacaggagagaacccaccctacaccaggatctttttattagccagatgctgtcacaggggctgtttacccatgttctcatg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cccaggattttggatgtccttcacaattctggtggattccaattttccttcttgaattaaaactcacagagatgatcttt<br>atgtactgtcttgctatttacaagtgtctgaggcatgctaaaagcttctaatctgtcatctttgaaaaaaactttatttacaaaacttggtgccaacctg<br>caggctgcagtttgtcaactcctgatatatgctataatgttctggcagtaatccaccttggaaacctctaggagaatgagaaggaagatttttctattag<br>tatccctctcttctctgttcccctactcacccttcaaaaggcacttgactttttcttgccatcctctagcataatattcagtaagtctagtgtttgaaaa<br>tgagatacaggagggaagtt	Other	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	precise insertion position unknown TSD unavailable	60	550	238	NA	intergenic
0	chr4	133619891	133620182	1001066	0	-	Yd6JXH34; RIP_Alu_chr4_133_02	GCCACCAAAATAAGCATTGTAAC	AATTGCACTTCCCAATTTCACT	SINE	Alu	Yd6	ctaatgttctttttttaagttttgtagttttattccttacaattatgtctttgatcaattctgagttactttgtgtgtgtgtgagtgtgtgtatgatgtt<br>ggatagggtctaaatgcaactgttttacatatgaaaatccagttatcccagcactatatgttggaagacaattacttccccatttaattgttttggcatt<br>ttttggcagtgctgaaagcaaagcttaaggagcaggacaagtcatttaggtgcctttgagaagaatactgaaaacgagaagctgcatgaagagggccacc<br>aaaataagcattgtaactttatatatccatagatgtatgtttttatttctgtactttcaattctatttaattgatctatgtctatc<font color="green"><u>AAAATGCAAGTATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGCA<br>AGTATC</u></font>acactattttgattattgtatcttaccagtgaaattgggaagtgcaattccttctactttgttatttttcaagattgttttggttatttggagt<br>ctctattttcacgtgaattttagaatcagcttgttaattttacaaaaataggcaattgaaattttgatggagattacattgaatttgtagattaatttgg<br>agagtattacaatctaaagaacattttgtactcctattcataaacatggaatgtctttccatttacttagggtttctttaattttgttcaacaacgtttt<br>gcaatttttaatgtacaactctttcacctctttgattaaatttacttgtaagtattttattattttaatattattgtgaatagaataatttt	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	461	155	NA	intergenic
0	chr4	109107691	109107975	1001067	0	-	Yd6JXH44; RIP_Alu_chr4_109_01	CTATGACGTGTCCTGCCTTTT	AAAGTATGTCCACGTGGTTGG	SINE	Alu	Yd6	aaataacaagaaccttggatttcacaatcctccccgcatcttgactctagcgtgtctttgtactgacttcaagtctagacaaagcttaactttttcaacc<br>aattgtcaatccgaaaatctttgaatccgcctgtgacctataagtaaccccctcatactatgacgtgtcctgccttttggggccaaaccaatgtatacct<br>tgcatgtattgatctatgtctttgttgatatcttctgtctccctaaaatgtataaaacctaactgcagccagacatgcagctcacacctgtaattccaaa<br>actttgggaggccaaggcaaacggatcacttgagcccaggagtttgaggccaggctgggcaacatggcgagacctcgtctctac<font color="green"><u>AAAAAATACAAACATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATACAAACAT<br>T</u></font>agccaggcatggtggtgtgtgcctgtagtcccagctactcaggaaattgaggtgggcagatcacttgagcccacaaggtggaggatttagtaagccatg<br>atcgtgccactgcactccaaaaaattgtaacccaaccacgtggacatactttctcaggacctcttaatactgttccccaggcctgggtcactcatattgg<br>ctaagaataaacctctttaaatattttacagaatttggcttgtcatcaatagttttaagatcactctgtgagctttgcagacaatagcaggtacagcatg<br>gtagaaacagggagacctgttaggaggctatgataaatatctagatgaaaaatgattgcagcttgaactaggctggtgagaagta	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	695	394	NA	intergenic
0	chr5	77062326	77062619	1001068	0	-	Yd6JX35;pAlu5-77100929; RIP_Alu_chr5_077_02	GGAACACATCAAGAGACTGGAAA	TGTTGCTTTTAAACAAATCCTTGA	SINE	Alu	Yd6	tgtcatgattttaataaatcatttgttgcctgaaatacatttgtactctatgaaatttttgaagacctccaagtctactgaagtgtatttgaacttacat<br>tactagtatagtattataattttgatttccaaatctagaatgttaagttctgaagacgctgcactatatcaaagtatacaaagattttcttaaggccaaa<br>cagttcttcacgtcttttcaggaccaaagggatggtgtctgatatatcattgcttttcacagaattgtttttcaacaaatagacacttaatagatatttg<br>tcaattgagctaaggactggaggaaaccagaaaagggtttatgagggggaacacatcaagagactggaaataaaagtttgcttt<font color="green"><u>ATAAATAAAAGTGAGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAATAAATAAATAA</font><font color="green"><u>ATAAAT<br>AAAAGTGAGA</u></font>gacttagaaatggagaaaaaagagaaacaaccgctgttaagtaataaccaccctcaaatagacatttttcaggatagtatttttatttta<br>ttagagatataaaagatatgaaaatatatcaaggatttgtttaaaagcaacaattttacattttttaaactaggaagagactagtctattgtggaaaatt<br>taaaaattattacagttctgtcaaaaagtttttgtagtttacctagaattaactagaatagattcttaaattctagtttaatagaggggtctgtgtttgt<br>gtgtttaactgcctgctaagttacatagactaatccactccaggttattattattattattattttgcaacttaagaaaaatagtagggacata	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	505	195	NA	intron:TBCA:NM:004607:1/4
0	chr11	87918562	87918861	1001069	0	-	Yd6JX455; RIP_Alu_chr11_087_01	AACACATCTTGGTTTAAGTCACCA	AAGTTGAGCAAGTCTTCCAGAAA	SINE	Alu	Yd6	aattacctctgactagctccctacaacaacatgtgggaatttaagatgagatttgtgtggggacacagctaaatcacatcagggccctgggggtatacat<br>tttccaatagtttttctaggaagctgctgtgacattattatcaaaaattgataaagaaagtttaattgattaagctgtatatttatgttttgggaaccta<br>gcactttttaaaaagtagataaatagatctaagtatctcttcaaaatcaagttgctaattaaaagttttcaatgaaagactttgtaaaccaagttgagca<br>agtcttccagaaagtagaatacagagacaaaaagaatgaaacattgtttaaaaagtcttaatggtgtcctcgcgttagacttt<font color="green"><u>AAAATTTTGAGAGATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAG<br>GCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAATTTTGAGAGATTG</u></font>agaacaaataaaaagagagagaaaattatcaaagaaataatgcaagaatgcttctgataaatgaaaagcatctgtgtccagat<br>gaaagagaccgcttggtgacttaaaccaagatgtgttaactgtaaaatttcaaaatttcaagaataaataaaaaataaatagtaaatccttaaagatttt<br>caagataattacatattaatttcattgattttaaaaccaatccatatatatcctagataatttagaaaagtataaagaagaaaaatgtttgttctagtta<br>tatgtataatcatgtacatatatttataaaatctggataattgatatatgtatgacatatatatgtaattttatatttagcttttttccaaataatacaa<br>	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	547	230	NA	intergenic
0	chr12	31773743	31774029	1001070	0	-	Yd6JXH14; RIP_Alu_chr12_031_01	CCTTTATGCACTTTTACCTTCC	GACCCCTTATCTTTGGAATGC	SINE	Alu	Yd6	agtctggaaggaaatcagtggaaatggagataattgcattgaggtggtaagattatgtaagccttagattttcttctttattgttatagcatcacaaaaa<br>ataaaaatgagaagaaaagaagagaattacaattttaatggtcagtgctcaatacttggtaggtacatgtactaagtgcagggaaggcaaaggggacact<br>cattacactctaattcactcagattcagagaaacttccaggccagaggagccacagatatttataattaataacctgttttgaccccttatctttggaat<br>gctgattaacatgaagcaataattactattaatatattagtctttcaatattgctgagactattcataagactgaaaacccttt<font color="green"><u>AAAAAGCTCCCACGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCCCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTCCCAC<br>GAC</u></font>acataaacataaggtgatattttaatctttatcataatgaatttatccaatccagggtttctaaaattgtcagtggtaatttggcctgggaatttat<br>cctagaatactctgacgagaactagattaattctggtctcccacttcacagtgttctgtttgccttgggactcattgtaggtaaaaaggatgtggagtct<br>ggaatagtctatgcttatgaaaccgcaagcaaaattcctagagtggccctgaattcaacccatcttcctgggactatgacactcatggctatgggtgaaa<br>ccaacctttgaacagtcattgcattccagtactcccataacttgctagtcattgcatttttttcaaggcctcttttgaagagttatt	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID: 15008405</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	830	527	NA	intergenic
0	chr10	9519829	9520121	1001071	0	-	pAlu10-9669962; RIP_Alu_chr10_009_01	NA	NA	SINE	Alu	Ya5	cctttttggagttttcctcagtaaccctttgtgagtggtcatctctttcctgccagggtcctcagggaggcagcatgccagttggcttgattcatcaaat<br>tccaaaccccttggggttgggtgaatgatggtcccctaaagatgtccaaatcctaatccctgaacatgtgaatattgtaacttatactttgcaaatgtga<br>ctaaggttcttgaaatgggaagataatcttatattatctgagtgggcctgctgtaatcacaagggtcttcataagagtgtggcaggaaggtcaacgtcaa<br>agagagagagatgtaaggacttaagcagaggtaggagaaaagagaagatgctgctgctcgctttaaagatggaggacgaggactcct<font color="green"><u>AAGAAATGCAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAGAAAT<br>GCAGTC</u></font>agcctctagaagcttgagaatcaaggacccccggaagtaatgcagacctaccaacatccgggttttagacttatgaccttcagatatgtgagaa<br>aatacattatttttgttttaaaccactaaatttgcagtaatgtgttacaggaacagtaggaaactaataagtgtgcttttaaagacttcccttttcaaga<br>caattattctttttatcacatctctattctgctaaaaataatctgttttaatataattttttgtacctctcatttgaagtctatcctaaaaatgtagctt<br>ttaaacttgcattaaaacattcagtcatatttagagaaagatagagatggaaatgatagttacatcaaagaagttaatgccacagaaattcca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	46902194	46902195	1001072	0	+	pAlu10-49034251; RIP_Alu_chr10_046_02	NA	NA	SINE	Alu	Yb7	aaaaaaatgtttttttttctttaatttgtttcattaattgatttagtatgagcttatgttgcagagctgaaatctagttttggagtgttaacaaaattaa<br>gtttcccagactgtaaaagagggctggatcctggaccatggtcattttaccgaggcaattaatgtcagcagggacctctcaggggccttttcctttttcc<br>taggtaggtgtaaactcaactctgcaatctctgtattttttcctaacatctctatagttgttaacgactaggtaacattctctctggtggctgtaatgca<br>atttacttaaccattttcctattataagacatttagatgatttctatgaacatttttttaaaaaatcagattttttttgtcttttt<font color="green"><u>AAGAAAAAGAGGAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAAAGAGGAT</u></font>ctagttcaccgatttctgaataagtttcttttgtgtggaacagatggaaatgttgggaaaaaaaagaaatctac<br>acttttctgttgtcctaatgaggcagtgaacttagttggatagcttgggtagtttatactacctattgatatatacccccaaacagaaatcttccttttt<br>ttttttttttttttgagatggagtcttgctctgttgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctctgcctcctgggttcaagtg<br>attctcctgcctcagcctcccaagtagctgggactacaggagcccgccaccacgcctgactaatttttgtatttttagtagaggcagggtttcaccatat<br>tggccgggctgg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM35B:NR:027632:1/7	
0	chr10	54860821	54861130	1001073	0	-	pAlu10-54753125; RIP_Alu_chr10_054_03	NA	NA	SINE	Alu	Ya5	aagcaatttctatattaaagttatgtaacagaaacatctgacttttacttggccttaatatattgtacattttcaataaaaatgattatttccaacttac<br>agttatgaatcactacctttaagcaattatcatatcttatgtaccctgggagccacacagtagcataagatgcaagggcatgagatatagctgatagaca<br>agttacataaacactcagaggcaaatagtcattcaagacaaaatttagactatagacagtaaatgttaaagaaatgaaaagtagatcaacccttcccttt<br>gatatgatatgattagaaaagtcttctaagaactggtgagattggacttggcccttaaagaagaagacagtgtctgataagcagaaatatt<font color="green"><u>GAAAATCGG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAAATCGGG</u></font>gtgcctccagattgataacacatagcttgatgatggatgttgtttagatcagggtagatgatactataatagaaaagatg<br>aaaatttcaataataacacaataatgctttatttgtcactcatagtgagtctgatgcagttcatgctgtctactttcttatagatacgttatctgaagta<br>tatgactcacaggtatttgggcagaagtgatcacaggacctgacaactgcaaacaaggctgggataaatcagaggtgcacttagaaagctgatggtcaat<br>cctggctaacatggtgaaacgccgtctctaccaaaagtacaaaaaattagccgggtgaggtggtgggcgcctgtagtcccagctactcaagaggctgagg<br>caggagaatgg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	59015227	59015559	1001074	0	-	pAlu10-58907542; RIP_Alu_chr10_058_01	NA	NA	SINE	Alu	Yb7	gtacaaccactatgtggagatcccttaaagaactaaaagtagatctagcatttgatccagcaatcacactactgggtatctacccagaggaaaaaagtca<br>ttacaggaaaaaagttagtggcacactcatatttatagcaactcaattcacaaaaatatggaaccagctcaaatgcccatcaatcaatgagtggataaag<br>aaaatgtggcatatatatatatatatttacatgccatggaatatacttagccatataaagaaatggaataatggcattcacagcaaactgaatggaattg<br>gagaccattattctaagtgggaataatgggaaaccaaacatcgtatttctcacttgtaagtgggagctaagttatgaggacacaaaggtat<font color="green"><u>AAGAATGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAT</u></font>acaatggactttgaggacttgggggaaagggtgagggggattgtgggatgaaagactg<br>cacattgggtatagtgtacagtgcttgggagatgggtgcaccaaaatctcggaaatcaccactaaagaacttattcatgtaaccatataccgcctgttcc<br>ccaaaaacctattgaaattaaaaaaaggatacatgcgactaccatataaccccccaaaacatcagtttcacatgaaataagtacaaacaggaattcagta<br>atacaccaatcatcaaaacaaaacaaaacgaaacaaaaaacaaagggaattaatgttggagtctttaaaatcgcatttttacacattttttaatttcata<br>ttttcaaaagaagacctatatgaccataaactg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	66851920	66852225	1001075	0	+	pAlu10-66744220; RIP_Alu_chr10_066_01	NA	NA	SINE	Alu	Ya5	atattctagaaaatttctcacttatagtctaataaaatagaagctatttacttttgtatctaagcatgcagagataatcataagcattaaaaagtcagga<br>aacaacaggtgctggagaggatgtggagaaataagaacacttttacactgttggtgggactgtaaactagttcaaacattgtggaagtcagtgtggagat<br>tcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccgaaggattataaatcatactgctataaagacacatg<br>cacatgtatgtttattgtggcactgttcacaatagcaaagacttggaaccaacccaagtgtccaacaatgatagactggatt<font color="green"><u>AAGAAAATGTGGCACATA<br></u></font><font color="red">GGCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGGGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAAATGTGGCACATA</u></font>tacaccatggaatactatgcagccataaaaatgatgagttcatgtcctttgcagggacatggatgaagctggaaac<br>catcattctcagcaaactatcttaaggacaaaaaaccaaacaccacatgttctcactaataggtgggaattgaacaataagaacacatggacacaggaag<br>gggaacgtcacacaccagggcctgttgtggggtgggggtaggagggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcag<br>cacactaacatggcacatatatacatatgtaacaaacctgcacgttgtgcacatgcaccctaaaacttaaagtataataatagtaaaattaaaaaaaaaa<br>gaatga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	91547399	91547720	1001076	0	-	pAlu10-91678525; RIP_Alu_chr10_091_01	NA	NA	SINE	Alu	Ya5	tatatactatatattcttttttctctttttatatataatataataattaatatagttcaatatattatatattataaaaaatatatatgatggaatacta<br>tgcagcaataaaaaggaatgaattaacagtatttgcagcgacctctatgagaccggagactattattctaagtgaagtaacgcaggaatggaaaatcaaa<br>catcctatgttctcactgatacgtaggagctaagctatgaggactcaaaggcataagaatgatacaatggactttagggacttgggggaaagggtgggag<br>aggggtgagggatagaagactacaaataggctgcagtgtatactgcttaggttatgggtgcaccaaaagcttacaaatcaccacta<font color="green"><u>AAGAACTTACTCAT<br></u></font><font color="red">GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTTACTCAT</u></font>ataaccaaacaccacctgtgtcccaataacctatagaaaaataaagtttaaaaaaaagaataga<br>aaacatttgccttgttacctactacccccccaaaaaaaactgggctaaggacatgaatagacaactctcaaaagaagatatacaaatgggcaacaaacat<br>attaaaaatgctcaacatcactaattatcagggaaatgcaaatcaaaaccacaatgcaatgctatcttactcctgcaagaatggccataatttaaaaatc<br>aaaaaataagagatgttggtgtgtacgtggtggaaagggaacacttttactctgctggtgggaatgtaaactagtacagccactatggaaaacagtgtgg<br>agattccttaaagaactaaaag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	92969229	92969550	1001077	0	+	pAlu10-93100347; RIP_Alu_chr10_092_02	NA	NA	SINE	Alu	Yb7	ttacattcaattcatttattcagaattccaaatatacatagtattttgtgttgcttagtaactttgtttaatgtgtttacattttatcattaatcctttt<br>ttctgacataatttcatttactcatctgttacctgactaatattttcccttagtctattaattatgttaattgatggaatcttccttgtagaagaagaga<br>actttacaagtgagggacttcctctttagacatctgtcagaagtcagaggatggggctgggcacagtggcacacacctgtaatcccagaacttttgggag<br>gctaaggtaggaggatcatttgagaccaggagtttgaaaccagcctggacagcatagtgaggctttgtctttacaaaaaaaattagattaaa<font color="green"><u>AAGAAAAA<br></u></font><font color="red">GGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCAACAGAGCGAGACTCCGTCTCGAAGAAAAA<br>AAAAGAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAA</u></font>cgaagaaaggaattggaggatatctgctgataggagtagagtctcccagtttagtagctatcaatgggca<br>ttagggaatgaatgaatgaatgtggaaccaatatgcacgtgtcaactcaatgagattgacatgtggaaattgagattcccaaatgggtgtttttgtttgt<br>tgtttatttgttccttttaatctctaccatttgtgtcttttgccacttctggcatttagatggatagcagatcatagcattagacaatctataaagcttg<br>ggcaatttctaacatataaatgatttgcaacttcatatgccccactgctctcccttaacgcttccttcttcctagagggatgggcccccacctgtctgct<br>gggagatttggatgcccttccc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	131373897	131373935	1001078	0	+	pAlu10-100435311; RIP_Alu_chr10_131_01	NA	NA	SINE	Alu	Yf1	ttttttcagcaccacaccacacctattccaaaattgaccacatagttggaagtaaagctctcctcagcaaatgcaaaagaatagaaattttaacaaactg<br>tctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcacccaaaactgctcaagtacatggaagctgaacaacctgctcctgaatgac<br>taccgggtacataatgaaatgaaggcagaaataaagatattctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaag<br>cagtgtaaagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaatcgacaccctaacatcccaattaa<font color="green"><u>AAGAACTAGAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAAACACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAACTAGAGAAG</u></font>gcaagagcaaacacattcaaaagctagcagaacgcaagaaataactaagatcagagcagaactgaaggaaataga<br>gacacaaaaaaccctcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacgaaattgatagactgctagcaagactaataaagaagaaaa<br>gggagaagaatcaaatagatgcaataaaaaatgacaaaggggatatcaccaccaaccccacagaaatacaaactaccatcagagaatactataaacacct<br>ctacgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatacactctgccaagagtaaaccaggaagaagttgaatctctgaataga<br>ccaataacagga	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MGMT:NM:002412:2/5	
0	chr10	111036395	111036699	1001079	0	+	pAlu10-111167520; RIP_Alu_chr10_111_01	NA	NA	SINE	Alu	Yg6	atatttactgtctcactctttacaaaaagacattgcaatccctaccctagaaagaaaagtatacaagtaacacactattgtaatgtaacatattttaagt<br>ttttattaagatatgtatttaagtgatatattatttttcatttctactgtgttaagatgatattttataagtaagttacctcaacaactttcaaaaatat<br>ttatgttaagacatagttccttgggcaatgtacttgttacatgaaatgagattttatttgtttcaaatgtgtcttaacaagggaggactttggcataggg<br>ataggaaaatcagtgaagaagtttcttttctcttaggcctgactttggtatcatcacagatcctgaggatcataagaagccttaa<font color="green"><u>AATTTACCTACATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATTTACCTACATTA</u></font>atgctgatctaatgtttgaatcttcttcacactaaatgaccaccatttctttacatttcttcactgatagataatgcata<br>tattctcaaggaaaactaacctcttctggtaagccctgattgaaactaggcttggcattaagtcaaaatctgtttcaattcaccaggtcccaaaaagaat<br>agatttaattcctttcccatattagtgcacttaagtatttgacaactactctatcttcctgacttttaaaaaactggaacaacagaacattgtaagagac<br>ttatcaaagctgtctgaggattttatccacattttctcattaacgtctcacagtgacactagtcagaggaaagtattatcatccctcttagacaacttgt<br>ccaat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	119634284	119634605	1001080	0	-	pAlu10-119765412; RIP_Alu_chr10_119_01	NA	NA	SINE	Alu	Yb7	ttagaagccctgggatgagagaagaaacattcctgaggatcatgccctttaccaatattcaaatcacagcctaaattgggtggctgaggtgaccctctag<br>ggtatactagatctaagacatggcccgcaaatgatcagcattgcatcggaggccccagtgggctggtctggctggcagattacatggagaagatcactga<br>tgataggtaggtgactctcccagttctaatcaggccagggatgggacaagaggaggcaggagaacttaatgcccagccaagctcagtctttgtcccaacg<br>cagccagacagttcacattcagccagctgctactgatgaaatttgcatctgaggctggatactgattctcagaaggttttcctataaacac<font color="green"><u>AAAAGATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTC</u></font>accaatgagttaacactgccctccttgcccataccaatgggaatgattactcctgtgaaggaaattatt<br>ttattttctaaattaagctagattttattcaaaaaaaatttttttaccaattctcagagatcaaattactgagtctttttattgctttttgggtcactgg<br>gaaaaatagtctccagacttttcctactgagccgggtctaatcaaaatatccacttctgttcattagctgttcttcacaccatagagcaccttcagatgt<br>ttataaaccaacctcgaatctctctctcaggcttttttcctatttgagaagcccagttcccacagtgcccttgttgattaggggagggctgcatgtagcc<br>ttgctgggaccataaccccagc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	129565314	129565608	1001081	0	-	pAlu10-129494810; RIP_Alu_chr10_129_02	NA	NA	SINE	Alu	Ya5	gggggtatacaactaagttatattccagttagagctgccagatttagcaaataaaaatagaggaggatgccccccaaaatttgaatttcagatacacact<br>ttttttagtatgtcccaaatagtgaataaatattcaaatttaattggagtcctaaattttaactggcaattccaacttcaatacaagctcaagttaaaaa<br>aactacccttaagtttctctgtcctaatttttgtgtatatttacaaaataaatttactctttaaaatttgaatttctattccatttcaatctatcaaaat<br>ttgaatttaaaaaaatgaattttctttaaaaagtgaaactggaaaatgacaatatatttgatgatcataataaaaagttgaaaaatctt<font color="green"><u>AAAAAAAACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>AAACTA</u></font>atgactgcagtaggaatttccacgggaagatttcctgagtggtcaagcaagacttttctgccagcattaatgttattttgacttgattttaagt<br>tgtttttgatatcaatgcttgtgactaaagtcacctcatatttcagtgccatactacaaagctgacagaaccttggcaacacgaaccctcgtattcactc<br>cctataccccactacatttgtttgctgtttcaagccactacgtttgtgctcatccagtccctgctaccaggaatgccttccacccagcccaggtggggaa<br>gcacaatttgcccttcaggactcaggagtaggggttgaaaccgccattgctgacataatccattccatcttgcttccaacctccaagttgtcctt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	130156353	130156669	1001082	0	+	pAlu10-130085857; RIP_Alu_chr10_130_01	NA	NA	SINE	Alu	Ya3	aggcaaagatttcatgacaaaaacatcaaaagcaattgcaaaaaaaccgaaaattgacaaatgggatctaaaccaaagagcttctgcacagcaaaagaaa<br>ctatcatcagcgcaaacagacaacctatggagtaagagaaaatttttgcaatctatcaatctgacaaaggtctaatatccagaatctacaaggaacttaa<br>gcaaatttacaagaaaaaaaacaaccccattaaaaagtgggcaaaggacattaacagacacttctcaaaagaagacatgcagtcaacaaacatattaaaa<br>aactcagcaccactgatcattagagaaatgccgatcaaaaccacaatgagataccatctcacaccagtcagaatggcaattattaa<font color="green"><u>AAAGTCAAGAAACA<br></u></font><font color="red">GGCCAGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACAAGGTCAGGAGATCCAGACCATCCTGGCCAACATGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCAGGGCATGGTGGCGGGTGTCTGTAGTCCCAGCTACTTGGGTGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTAAAAAAAAAAAAAGAAA<br>GAAAGAAAAAGAAAAAA</font><font color="green"><u>AAGTCAAGAAACA</u></font>aagatgttggcgaggctgtggagaaataggaacgcttttacactgttggtgggaaggtaaattagttcaa<br>ccattgtggaagacagtgtggcaattcctcaaagacctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatata<br>aatcattctattataaagttacatacgtgtgtatgttcactgcagcactattcacaatagcaaatatatggaatcaacccaaatgcccataaatgataga<br>ctggttaaagaaaatgtggtacgtatacaccatggagtactatgcagccataaaaacgaacaagatcacatcctttgcagggacatagatggagctggaa<br>gccattatctttagca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	132858490	132858821	1001083	0	-	pAlu10-132787987; RIP_Alu_chr10_132_01	NA	NA	SINE	Alu	Ya5	tttgtcatcttttgtttcaaagtgcatagtatttagatagtctaaaatgtgctctgcaaatacttccttttggaaattttgataataaaagttataaaac<br>gctagaagtgcagtggttcttcacttttttttttttataatggacctcagagattgtgagaaaaatgagaatctacctagtcatactcatagcaacatgc<br>ataaaattgtgctttattgcaataggcatgaatatctttaataaagacaaatgactacattttgtaggccatcattttgctttcattttctcgggtgaaa<br>tttgattcccatatcttgtgaaataattgacacaaatctgatttgggacaagaaaaccgaaaaacaactttcgtaatgcacac<font color="green"><u>AAGAAAATGCGCGTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAAAA<br>AAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATGCGCGTGAGG</u></font>gaggctcctagactgggctgaaccgggaggcgaaagtccggggtgctcag<br>ccttggccaccaggcacctttgacatccaattgatcttgcctttccttttgtggcagtaaatgttgaaaatgctgatttgcaaaaatttccatttgcgat<br>agacttagagcttttagaatttgatttgccaggcaggagtctattttaatctaggagctagagagttctctgagttcagcatgggtccagttgttttctt<br>tgttcttatgtcagtaagggcatcactgataagttcttctcactgacaccctgccagaaatcaacagcttagaaacacacacttcagtatgatgccatct<br>cagcaaactgaccatcacaggagcttgcagagt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	5007446	5007755	1001084	0	-	pAlu10-5107582; RIP_Alu_chr10_004_02	NA	NA	SINE	Alu	Y	ccagcttcaattgccaatttggtggcctctaaagctttacttttaggaacctgggggagtaaccataggtagtattttctgactaatgtgcctgagagtt<br>agttcaggcacaagtagcgacgttcacaaaaatcagcttttcctcctttcttggatgagttctgtatgtagaatcatgagcccatcccagtctccctggg<br>tctttcccagttagtaataaaggttgggcacagcaggaacttctgcagtcccagaaaaatcactgcttgaccactagtttggaagtgtccccaaaacaat<br>ttcaggttcagtcattttttggaaaaattaacaggatgcaacctatagttatagatataatcttaattatttttagtatggta<font color="green"><u>AAATTAACACAAGGAAT<br></u></font><font color="red">GGCCAGGCGTGGCGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGCTGGGCGGATCATGAGATCAGGAGATCAAGGCCATCCTGGTTAACAACT<br>CCATCTCTACTAAAAATAGAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGGGGCAGGAGAATGACGTGAACCCA<br>GGAGGCGGAGCTTGCAGTGAGCTGAGGTCGCACCACTGCACTCCAGCCTGGACGACAAAGCGAGACTCCATCTCAGAAAAACAAAACAAAAACCAAACAA<br>ACAAAAAAAG</font><font color="green"><u>AAATTAACAC</u></font>tagccacatggaaggaaatatgaaggaatacagtgtaagctcctgtgattcctctcccaccatattgcacagaatgcact<br>gactttacccggaatcatattttgtcaatgtatgtgaactgttgtctacaagagatgctctctacatactccattactaagattttgtctgggactggtt<br>acattgactcactctgcttcgcaggcacaaaacttccaaaagtctccaaaaggaaagcaggtgcacagaaactccgcagtttgcacaagcagttacttac<br>agccaccattcttatcagttaggaaatagtgagaaatccaccttatcagataccagcaggtttatatgggaaacaggcctgtctatggatagcagtctat<br>tat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:AKR1C1:NM:001353:1/9	
0	chr10	46697907	46698206	1001085	0	-	pAlu10-48826771;pAlu10-46573022; RIP_Alu_chr10_046_03	NA	NA	SINE	Alu	Y	ttgagaccaacctaggcaacacagtgaaaccctgtctctacaaaaaaaaaaaaaaaaaaatacaaaaattatataggtggacatggtggtgctcacctgt<br>agtcccagctactcgggaggctgaggtcgaaggatttcttgagcccaggaggcagaggctgcagtgagtcgagataatgccactgcaatccagcctcagt<br>aacagagagaagccatttctgaaaaaaaaagaaaaaggacttatcattatctaattcaatatattctataataatcaaaaaataccattgaatgaatggg<br>gaagaaaattagatcaactgctgtgaagacacttgtttacttctgatcaagaaatagcagcagattatacctctgtggtattagtaaaaca<font color="green"><u>TATCTTTGC<br></u></font><font color="red">GCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATTGAAACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCAGGCATGGCGGCGTGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AGCCCAGGAGGGGGAGCTTGCAGTGAGCAGAGATTGCACCACTGCGCTCCAGCCTGGGTGACATCTCAAAAAAAAAAAAAATTAAATTAAAAAAAATATG<br></font><font color="green"><u>TATCTTTGC</u></font>tttggttccaaatatattttttaaatgtttgatacatggggacacatcacagtgtatattatcaaattactttgagttataaatagaagag<br>gaaaatcaaaataggaaaattacaatagccttaaatctctcagttgatgttaaaagtactaaattctggcagctagggtaaaattaatataataaaagaa<br>tagatacagcactcactttttctatacccccaagtattttaattatttctatatttggaaatgaattcataatctattagtcacattatttgaaatttca<br>aattataattttatttgtttcagataaaagcctcatcctttaaaaacatacctttgggtgaataaacaaagcaaactttctatgactttcatataaacta<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	46834441	46834751	1001086	0	-	pAlu10-46709553; RIP_Alu_chr10_046_04	NA	NA	SINE	Alu	Y	aaaactcatagaaacagacagttaattggtagtcatcagaagctagggcatggggaaattgcagagatgtcggtcaaaagacacacaattccagttagcc<br>aggaggagtaagttcaaaaaattgattgcacatcatggtggctacggtgaataacaatacatttatatttgaaaattgccaatagagtagattttaagta<br>ttctcaccacacacacaaaatatagtaagtaggtgaagatgttgtagaggcccaaattcgggctcatgtacctgatgctcaattgaaaccaaacactgac<br>acaccaatgcttggggatagataaaagtttattccatttggccaaagtgagaacggggcaagatctctcagacatgtcttaacaataagacgaa<font color="green"><u>GCAGAG<br></u></font><font color="red">GGGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCGGATTACGAGGTCAGGAGATGGAGACCATCCCGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTGCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAT</font><font color="green"><u>GCAGAG</u></font>aggatatttttgcagctagacagtaagagagggggagttttagggaaccaaggggaaagtctgtgtttctttaatctctgata<br>atatcctgagcaaccagacttctgggcctcagcagttagttgcaacatccttataggcattcattccttctgcaaatgttttttgttaccttaaagttat<br>cttctcctggttgacaaagaaatagtaaatcagcagtttgcaattgtattgtgagaacaagggatgttggcttttatgcaagcaagcaagggcctaattc<br>gaatttttgttatctcaatcactaaaaatgctgaggtattgacacctcaaggggtccgattacaaggtaatgcatataatgcgtatgtttagcttgattt<br>agccattccac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	49022912	49023239	1001087	0	+	pAlu10-48965220; RIP_Alu_chr10_046_05	NA	NA	SINE	Alu	Y	ttacttttctagaatctcattcttaattatagttttatatttttccttcaacaaagtcttaaaacccatgcagctggtgtctattatttacattctgtga<br>tgtattttatttgactttgtgtttttagtcttttcacagaaatccttttattgtgatcttcttgtccaaaagcacttatttcatatctcttttccatacc<br>tatcttcattagcaggttgcatttcagtttcttcagtccttttttagataatatattttactacatctgtcttcacaacactgtatacgctctgatgatc<br>aggtctcccttcttttttttttttaaattctcgtcctctttgggacccgtgacaaagtaaaaggcagatttttttctcacctgacttaa<font color="green"><u>AAGTAAAAAGG<br></u></font><font color="red">TGGCCGGGCGCAGTGGCTGATGCCTGTGATTCCAGCACTTTGGGAGGCTGAGAAGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCTGGCTAACATG<br>GTGAAACCCGTTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGTGAGACTCCATCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAGTAAAAAGG</u></font>cttcatatgtttctcctctgattcttcttaggcccagcatttccaaaaacaaaatagtaca<br>caaaacattagttgtaatgatacttcaaaaggttcaaatactagtttttggctgctttctgactatatttttcttctaaagaaattttgttatgaagtat<br>tgaactattcagtatactttaatattttccaaataaagtttccaaactgatatttaacaatattctcttatattcaaacatattctgaactattttctgc<br>tgtgtctctagatcaatatttataaatctagattgttcatgtattttttttcctttgctaactttcaagatcatatcaaaaagcaccactgttgattcca<br>ttttttatgtttcattatttgaaactat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	112196446	112196447	1001088	0	-	pAlu11-6101314; RIP_Alu_chr11_111_01	NA	NA	SINE	Alu	Yb7	atcacaggcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctagga<br>atccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggatacaaacaaatggaagaacattccat<br>gctcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttctt<br>cacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatcgccaaggcaatcctaagccaaaagaaca<font color="green"><u>AAGCTGGAGGCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCCCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGCTGGAGGCATC</u></font>acactacctgacttcaaactatactacaaggctacggtaaccaaaacagcatggtactggtaccaaaacagagatataga<br>tcaatggaacagaacagagccctcagaaataacgacgcatatctacaactatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattcc<br>ctatttaataaatggtgctgggaaaactggctagacagatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatgga<br>ttaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcacaggcaaggacttcatgtctaa<br>aactcc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	27307887	27308202	1001089	0	-	pAlu11-27346935; RIP_Alu_chr11_027_01	NA	NA	SINE	Alu	Yb7	cgtctctactaaaaatacaaaaaattagccaggcgtgatggcacatgcctgtagtcccagctactcgggaggctgaggcaggagaatagcttgaacttgg<br>gaggtggaggttgcagggacccaagattgcatcactgcactccagcctgggcgacggagagagactccatctcaaaaaaacaaacaaaacaaaaaaaaac<br>aaaaacttgtgggctgtagtgcttagagtagtgcttagagtaaaatttccagccttagataattatattaagaaaaagagactgtgaattaaggagctaa<br>tcatctaatctaagaaaattaaatatcccagaaatagtagggaaaaaaaagaaaggtacgagacgcattaatgacacagtctt<font color="green"><u>AGAAAACAGAACACAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACAGAACACAAT</u></font>aaaaagaataagaaaaaaagaaaaactgctgttgtcttagtttcttcggaagcagactctgagatga<br>agatgagtgtgtatttcacccgtgaaggaaaagctccgtagagaagcaggtaagggggcagtgaaaactggccagggaaaaataggcaagggtaccattt<br>caggccaggtcccagggagaacagctcccatctgatcccacggtgggtttctgatgtgtgaagtacactcagcgttctttctcctggggcctccatactc<br>ccacagctgtcagttattggctaagggctaactggagtggatgtggattcctagacacttcagtgtctctgtgtaagtggccaaagtgcctccagtagcc<br>tgagggcagtcttctg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	31916728	31917042	1001090	0	-	pAlu11-31955758; RIP_Alu_chr11_031_02	NA	NA	SINE	Alu	Ye5	caggcacaaaaaaattaaggaaggtccagtctgtcttctcaagtaggtcataaactgattgcaatacaatgtgataaattctattaacacacacacagtg<br>caatgggttaaaagacggggtagtatttaattctgcagtgggcctgaaggacataggaggtcaaagaaaactatcaagagatgccttgggttgaagtttt<br>ctagcatatcaatgatcaatttaacattcatttgcatcttatggcccacaagctctccagagtcaaggaattagttctgctattcctaactttgctttag<br>gaacctccttgctattcttagctctcaaacaaagactgatgggaaaacagtggaagttctggaccttaagaacagattgaaccatt<font color="green"><u>AAAAAAAAGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAATAAA<br>AAAATAAAAAATAAA</font><font color="green"><u>AAAAAAAAGAAAGA</u></font>aagaaagaacagattgagggatttttctcggaagttagacaaattttaaaactttcaacctaagagaaaag<br>agtcaggataaaaatcagcttcctccctccaacagaaagctagtgttacttggtagagatggaaaggaaagagacaacaaataccatcccaccccacttt<br>cacttttactctctccaaagaaataccatcaccccatcaagtgtaggatacactaagacgtaggggatggaggagactagggtcatctctgcatatttaa<br>acttgcatccagctacttgtcttgaattccactcctaccctaaggcctttggcaaactcagggaacttaaagttataacagattgactgacaacctccca<br>gctcacctgtaatcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	33537688	33537996	1001091	0	-	pAlu11-33576739; RIP_Alu_chr11_033_01	NA	NA	SINE	Alu	Y	accacacagttgcaaagtgagccagtctaattctggggagcttagacaaatgtggctgattccatacctttgctaaaaaaaaagttgccaattcttcagc<br>cataggagaaattaaaggttggattggtcagaaagaaaacaggtgttttttgtttgtttgtttgttttaagactgaataattaggaagaaaaaggcagag<br>gagggaatttattttttccctcataacttcagagaattaggaataatggcttcacatatccatccctgtaaggaagataggagtaagaaaagttggtaga<br>cttctgggcctcaacttcttgctcagatatagctgtggtaatttggttgctcagatttctcgctcagatatagctgatcacatctc<font color="green"><u>AAGAATCACCTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATCACCTCCAG</u></font>gctgattggtagtggctgcctagactgttatgaagaattctaagcacagtcctggattggcagggaagggttctgg<br>gatcaattagcaatgtctgccttgggtgctgtagtacagaatggcagcatgaatttggacagatgtttagcatctctggggaaggtgatctctgaggttt<br>cttctagcatctggtccaactgcattcaatttcagatgaagctaggaccaataatgcttgagtgacttgccaaaggtctagcaccagaactagaggattc<br>cctctaatagtgttcttgctaccaacagatgcatcacgttacttttctggagcactgactcagagatagaggaggtaaaatgaagcaaggagaagcaaag<br>ggaggaggtt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	115750476	115750477	1001092	0	+	pAlu11-36736991; RIP_Alu_chr11_115_01	NA	NA	SINE	Alu	Yb7	tgcgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggattggtggttatatcccctttatcatttttttattgcatctatttgatt<br>cttctctcttttcttctttattagtcttgctagcagtctatcaattttgttgattttttcaaaaaatcagctcctggattcattgatattttgaagggtt<br>ttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctagttctttta<br>attgtggtgttagggtgtcagttttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgcttta<font color="green"><u>AATGTGTCCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTGTCCCAG</u></font>gcgattctggtatgttgtgtgtttgttctcattggtttcaaagaacatctttatttctgccttcatttc<br>gttatgtaccctgtagtcattcaggagcaggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttctagtttgattgca<br>ctgtggtctgagagacagttttttataatttctgttctttcacatttgctgaggagtgctttactaccaactatgtggtcaattttggaaaaagtacgat<br>gtggtgctgaaaagaatgtatattctgttgatttgtggtggagagttctgtagctgtccattgggtccgcttggtgtagagctgagttcaagtcctggat<br>atccttgttaactttctgtc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	37666647	37666942	1001093	0	+	pAlu11-37705700; RIP_Alu_chr11_037_02	NA	NA	SINE	Alu	Yb7	tcagaccttggtagatagctgtaactgaaaccacaggaagtgaaatctcagataagagggtgcctctgtcatttttactgtagttgtgattgtaggatgc<br>caaataaaatcaattaaatttatatttatgtttagatgaccatggaccaggttgctttgagagagtaaaacataatcaggacatagtgacaactcttaaa<br>aagtgtgtaatttatcgagtgtaaagggaactgagagttagaaacatcttgtaagacagtgaaaacataagctcctacccacatttcataaacatatgtt<br>tatttctgcccaatatcttttgagagaatcatgtgtattaatttttattgctgctgtaaccaattacaacaaatttaatggcttaaaat<font color="green"><u>GTTATACTTCT<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GTTA<br>TACTTCT</u></font>gtaggacagaagttcagaataaatctcagtgttctaaaattaaggtctttcttgatcttggctccctctgaaggttcttggggtatatccatt<br>tcttatctttttcagttcctagaagccacctacactatgttcctcagcttccagccccttccagcaatggcttcattctgattactgtttccattattac<br>attttcttctctgaatctgaacctcctacttcatttttataagaattctttggttaggttgagctttcctgcataagctagcataacctcagatctcagg<br>attctcaactgaattggatctgccaagttccttttcccattcaaagtaacgtattcacaggttctggagattagaacatggccatcttgaaaaggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	41007033	41007340	1001094	0	-	pAlu11-41046081; RIP_Alu_chr11_040_01	NA	NA	SINE	Alu	Yb7	cagagccttctgaatcaaacttcttttatatcatatcactttggctttatttttattttgaaacaatttcaaattcacagaaatgttgcaaatataatgt<br>ggaaaactttcatatatagtttaactagattcactagttttactcattttgctaatttgttttatagttggtctgtgtaaaatgtatataaatgcttaca<br>cgtatattaattattataataaaaattatatatgtagttgatttttaaataccttgagagtaggttaaatttatcatgctgttttaccccttgactctta<br>acaacagcacagttttcaagttcaaaatatttaagtgacacaatgaatactatctattctacaatccatctacttgtcaatttttt<font color="green"><u>AAAAATGTTCTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATGTTCTTTA</u></font>tagctttctttttttaaccccaatattaccaaactacaagaaaataaaaaagaaaaagccatctttgttaccatagtt<br>atgataaggtacttttccccccctattaactgaaacacaaaacaacaaaaacaaaaaggaagataaatgtatctttcagtcactcagcggaagaaaaacc<br>catagactcataactgtgtaaattttaatgactggccattctttctgtaatgtgtacaaggaggaaaaaagcatgtatctcaaaagacaatagtgatgaa<br>actgaatgttactgttttcatgctaaactaagcccattaggtaagaatcctgagaagtatgaacaagccacacagaactcttgggtctcctccccctgct<br>tgtcttgc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	57962844	57963157	1001095	0	-	pAlu11-58213623; RIP_Alu_chr11_057_01	NA	NA	SINE	Alu	Yb9	attgaaaccaatatatctatatctatatctatatagatatagatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcccatgatcattgaagc<br>attattcgtagtagctgagatgtggaaataacctaaatgtccactgacatatgaagagatagagaaaatgtggtacagttagccctctgcctctgtgggt<br>tccacagtcatggattcaaccaatcttggatcaaaatagttgaaaaacaattgtgtctgtactgaacgtgtatagacttctttcttgtcattatttttta<br>aacaatacagtataacaactatttaaatagcacttatgaatagcatttacattgtattagggattataagtaatctagagatcattt<font color="green"><u>AAAGTATACAAGA<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAGTATACAAGAAG</u></font>agatgtgcataggtttatatgcaaatattacatcattttatatcagggacttgagcatctgcagatttggg<br>tatttgtggaaggtcctggaacaaatcccctgatggacactgagggatgactgtatatattagaatattactcatcttttaaaggaaatcttaccatatg<br>caactacacagatgaaccttgaaaacattatgctaagtgaaataagtcagtcacagaaagaaaaatactacatgatttcactttaaggtatctaaaatag<br>tcaaactcataaaagcaaaaatagaatggtggttgccaggggcttggggccaggaagaatgaggaattgtagttcaataggtataaagttccagttatgc<br>aagatgaataaattct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	58220622	58220934	1001096	0	-	pAlu11-58471402; RIP_Alu_chr11_057_02	NA	NA	SINE	Alu	Yb7	caaatcaaaaccacaatgagataccatctcacaccatttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaatag<br>gaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcaattcctcagggatctagaacttgaaataccatttga<br>cccagccatcccattactgggtatatacccgaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaata<br>gcaaagacttggaaccaacccaaatgtccaacaatgatatcagtttattttaagcagataacaacttaactttgattgcatataaa<font color="green"><u>AATACTACACTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AATACTACACTTTT</u></font>atccccccccctccacattttaggtttatgtcataatttatttctttttatattgtgtatctttttataaatt<br>atcgtagctatagttattgatatagttttgtgtcttaacttttatactagagatataattgatgtccacatcatcattacaatatgatgttgtacttact<br>tttaccatgagtttttactttcatatgcttttatgctactaattaggatccttttatttcagcttgaagaactccctttatcattttatgtaagacaggt<br>ctagtatttatgaactcccttaatttttgtttgtttgggaaagttatctccttcatttctaaaggacaactttgccaggcagaatattcttcattggcag<br>gtttttgttcttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	58809303	58809617	1001097	0	+	pAlu11-59060085; RIP_Alu_chr11_058_02	NA	NA	SINE	Alu	Yb7	cataaaattcggctttgggaaattcacagggatttttgtgttctacccatttgtttcatttttcttgtgtacctagataggaaaattcattggttaagtt<br>aatcaaaagaacctgagagtaaagtcagtattttatgtaaaactggaatccttaatttctgaaaaactgagttctttctggcttatacattaggactgga<br>aggcagagaagtcttacacaaatggcaaaatcttactaaagataacttagagtggaacattccaaatgaaaaacaatgcattgaactacatttaaaaatg<br>agggctctcagtaaagtcccttttggctaagaaccggtttggcactatagaatgtcaactgttatactctttggcacatttgt<font color="green"><u>AAGAATTCCAAGTGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCCAAGTGTTA</u></font>tttcaaaggaaatttacagatatgtttccaaattttctatgcttttttcttatttttgtaatgaaact<br>gggaaaaatttcaaaatggttatagatctgaaatatttggccctaagaaactaaagaaaatctttgccaactcctgctctgaggtttccagtcacaactg<br>ttcttagatatttcctattccagaagaaagaagactcttcaggcatctgatgaccaaaataaaagaaacattatgatggtggtggtggagtgttctgcta<br>caggcatgtgggaggctcacagaactcttaatattcacttttaattcattccaccagagaggaaatgcatgggttttggataggactctgtcatttatcc<br>ctgtaagaacttgag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	61107801	61108125	1001098	0	-	pAlu11-61358592; RIP_Alu_chr11_060_01	NA	NA	SINE	Alu	Yb7	ccaatttttaccaagcatctagtatatgctgaaaaggaaaaaaggcgactaagtcacagtctccaccttcaagaactcacagcctggggagaggctaggg<br>aagcagatacccataaattgaaaatttatgtgaggtggtaattacagtgatggagtccacactaggactggctgccaaccagctcagggtagtggggaga<br>tggagatcagggagagccttccaggtggggagacatcagagctgggcctctgtagaatggtaggagttagccaggccaaaaggaggctggacaaggaaag<br>aattttccaggccacagatactgcataagcaaagccagagatgatccatagcctggcaggtacaggagctggcgtgaagagaccat<font color="green"><u>AAGAGGAAGGCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGGAAGGCAGGG</u></font>gatggctgggcgcggtggctcacgctcgtcatcccagcactttgggaggccgaggcgggc<br>agatcacttgaggtcaggagttcgaggccagcctggccaacatggtgaaaccacatctctactaaaaatacaaaaattagccgggcgtggtggcaggcgc<br>cttgtaatcccagctactcgggaggctgaggaaggagaatcacttaaacctgggcagcggagactgcagtgagccaagatcgcgccactgcattccagcc<br>tgggcaacagagtgagactctgcctcaaaaaataaataaataaataaaaaataaataaaagaaaataaaaaaaagaggaaggcagggatgatgggagatg<br>aaggtggggagtcagggagctatggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DAK:NM:015533:5/18	
0	chr11	71861610	71861912	1001099	0	-	pAlu11-72084202; RIP_Alu_chr11_071_01	NA	NA	SINE	Alu	Yb7	aggcgtgagccaccgtgcccacccccacatttccttttcaattgtggcttaaatagtggctgtcctaagacttctgtcaaccacagacaattgttttctt<br>attttgatcctcttcaaaaggtggtttataatcaactataggattttgacaggttctcttgaatgcaggtttctgataagtttggagattgtgacgtcag<br>aatagaggaaaaactttcaggactcatggacagctgaaatgttcatgacgattaaacaggacaggagttaactgcatggaatgaacaaatagaagactga<br>agaaatgtttttgactttgcttaaaatgctgctgaaactttgttttgttttcagagtcaggaaaaattttgagctatttacacctttt<font color="green"><u>AACAATTCAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AACAATTCAGTA</u></font>aagtatacttctggcaacatatttggagcatatttgtttttttctacctgatttttccagaattaggaaactaggtgtgagtatt<br>cttaacttatagcaatatagttatttgcataagtgcaataagaatctgtttcttggccgggcgcagtggctcacgcctgtaatcccaacactttgggagg<br>ctgaggtgggtggatcacctgaggacaggagttcaagaccagcctggccaacatggcaaaaccctgtctctactaaaaataaataaataaaaattagctg<br>ggtgtggtggtgtgtgcctgtaatctcagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagatcgtg<br>cca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	74145072	74145406	1001100	0	+	pAlu11-74367669; RIP_Alu_chr11_073_01	NA	NA	SINE	Alu	Yb7	aaatattttatttatttatttattttatttttgagacagagtctggctctgttgcccaggctggaatgtagtagcacaatctgggctatctggaacctct<br>gcctcctgggttcaagatattctcctgcttcagcctcctgagtagctgggatcagattaacaagtattttaaaagattgtctcctaatcttaaatactgg<br>ctaaaatgctgagcaacaggaactctcatacactactgggtagaagtataagagaatcaatttattaaactgtttggtaataacttccaaaggcaaacat<br>aggcagaccctatgaccaagcaatttcacttctaggtgtatacccaacagaaatgcatataaaaacatcattattggaaatagctcaa<font color="green"><u>AAGTGGAAACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTGGAAACAC</u></font>cccagatgtccatcaacagaagaacagataaataagtttgtagagtatttcta<br>aaacaaaatacttagcaatgaaaactaatgaaccacagctgtacatgaaaatatggttaaatctctgatatggttaggctttgtgtccacccaaatctca<br>tcttgaattataatccccaggtgttgagggagagatccggtgggaggtaattggatcttgggggcggttttcccccatgcctttctcgtgatagtgagtg<br>aattctcacgagagctgatggttttataaggggctcttctgctttccctctctgacttgctctctctcctgctgccttgtgaagaaggtgcttgcttccc<br>cttctgccgtggctgtaagtttcctgcggcctccc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	14741987	14741988	1001101	0	-	pAlu11-74692148; RIP_Alu_chr11_004_02	NA	NA	SINE	Alu	Ya5	aatctccttaagctgataagcaagttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattcttatacaccaacaacagacaaacag<br>agagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaagga<br>gaactacaaaccactgctcaaggaaataaaagaggacacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggcc<br>atactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactacttta<font color="green"><u>AAGTTCATATGGA<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCCGCTAAAACA<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAAACCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAG<br>TTCATATGGA</u></font>accaaaaaagagcccgcatcgccaagtcaatcctaagccaaaaaaacaaagctggaggcatcacactacctgacttcaaactatactaca<br>aggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataacgccgcataccaacaa<br>ctatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaag<br>ctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacctaaaaccataaaaaccctagaag	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PDE3B:NM:000922:1/16	
0	chr11	93102816	93103118	1001102	0	+	pAlu11-93287245; RIP_Alu_chr11_092_03	NA	NA	SINE	Alu	Ye5	cccatttcataatgctgtcactttggggtttaggcttgacatatgtatttgttgtgggggacacaaacattcagtccttaatagtcactaaataagtcca<br>agccccaccctctaaaaaaacaagaggagaaatttggcaactgagtgaatgaaggaaaaaatatttcgtgtcaagaaatagaaagaaagtagtggcaaat<br>gcaaaaaaaaaaaaaagttgtttgaaattcccttattagtaataagtatttgttataagacagactttttacatttttaacaataagtgacaaattctgt<br>attttcctagcaaaaattagagatggtaaaaaatccaacatgaatgatttgacaccttttcttttgtttgttttccctaataggt<font color="green"><u>AAAGAATGGATTTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGAATGGATTTAC</u></font>tttttttttctcagaatgaagatgtacaaatgaaagaagccttatttgctgtactttaaaatgaataacatttttaaatatg<br>tttgtctccccactttttaaaaggaatttagagcaaagtcaagagaatgggacaagcaagagatattatatcagactcatctgatttctttagatgctca<br>acaaaaattattatctgagaagtgtaatcagtttcaggtaagttatctaatactattctctaaatcaaaagcagaagttaaatattggtatctttaccat<br>tcaccagtaatctatttacaaacagacatgccaactaagaaaaaacgagagtaggtccaaaggtgggtacagtcacaagtgcatagaatatctgttaatg<br>gtg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCDC67:NM:181645:5/14	
0	chr11	99276337	99276663	1001103	0	+	pAlu11-99310323; RIP_Alu_chr11_098_01	NA	NA	SINE	Alu	Yb7	ttgagttaaatctgcttggtgttttataaccttgcacttgactattggtatctctagatttaggaagttattatccctttgactaacattctatccctct<br>ttttctaccttctctttgaagacagtaactcttaggtttgcctttttgaggttattttctagatcctatagctgtgcttcattgttttagttatttattc<br>ttatctctcttctttgtgtattttcaagcaacctcttcaagctcactaattctttcttctgcttgatcgtttcttctattaaaggactctgatatattct<br>tcagtatgccaattgcatttttcacctacaggatttctgcttgatttttaaaaattatttcaatctctttgttaaatttacctgatagaattct<font color="green"><u>GAATTC<br></u></font><font color="red">CTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATTC</u></font>tgaattcctttggtgtgttatctcgaatggcttggagtttcctcaacacagctattttgaattctcg<br>gtgtggaagctcacatatctctgtttctctaggattggtccctagtcctttatttagttcacttggtgaggttatgttttcctggcttgtcttgatactt<br>ctagatgtttacctgtttctacgcattggagagttagatatatattgtagtattcacaatctgggcttatttgcactcatccttcctgggaaggcctacc<br>agatattcaaaaaggcttgggaattgtgatctaatctgtatctgcttgaaggggcaccccaagcccaataatgctgtggttcttatagactcatagaggt<br>accaccttgatggtcttggataagagc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CNTN5:NM:014361:2/25	
0	chr11	101290011	101290317	1001104	0	+	pAlu11-101323986; RIP_Alu_chr11_100_01	NA	NA	SINE	Alu	Yb7	tttttgtgttctgttgagttcttttcactaatattttataattttcattgtagagatttttaacctccttggttaaatgtattcccaagtattgtatttt<br>tgtagctattttaagtgtttttattttaaattttttcagctagttgattgttagtagagaaacgctactgttttttaatgttaacttcatatcttgcaac<br>tttactgaaattgcttatcgcttctaagagtcttttggtgaagttgttagatttttctctatagcagatcatctgtcatttgcaaagagggacaatttga<br>ctttcccttttccagtgtggatgccatttctttctttcccttgcctaattgttctgcctaagactttcagtaccacattgaat<font color="green"><u>AAGAGTGGTGAAAGTAG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAGTGGTGAAAGTAG</u></font>acatccttgtcttgctctagttcttacaggcaaaactttcagcttttcctcattcagtatgatgttagctgtgggt<br>ttgtcatatagggactttgtggtgatgaagtatgttctttttatacctaatttattgagaatttttatcatgaagggatgttgaatgttatcaaatgctt<br>tttctgcatctattgaaatgatcatatggtttttgtccttcattctgttgatgtgatgtgtcacctctatcaatttacatatgctgaaacatcctttgat<br>cccttcaatgaatcccactagattgtattgtattatcttttcattgtgcttttcaattgagtttgctagtattttgttggggatttttgcatctattttc<br>agcacgg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	102471859	102472162	1001105	0	-	pAlu11-102505827; RIP_Alu_chr11_101_01	NA	NA	SINE	Alu	Ya5	gagaagaacaatggaaaagggaaagttaaagcaggtagaagcctcatggctgagagtataatatacagcattgttcacttagaaaaattcagaggatttg<br>ttgggaacacgatgtaaaacagggttagatgtatcagatttaaagcaatgacaattttcacggagtttcatagaaataagctagtgctcagggaagaggt<br>cacagttggaggcttcgtgggttttgaatctcccacataaaggagacatttaaagatgtggagatgaaaaacagctctgtagagagaatgaggagaaaga<br>aaaaaagtctaaagaatgagcctaggaaatagaagaaaaggatttaataacaaccagagagattcagcactccgaaaataataacgat<font color="green"><u>AAGAATAGCCGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATAGCCGA</u></font>cacttcgtggtcatttgcaacgtgctatgtgttgtgctaagaattttacagatattcactcatttaatccatactgtcattgtc<br>ctcagctggaattataacttagttctgtttgacatcagagacaaaacccctgtggtgaaatcccaaataaatctgggaaaaaagggtgtattttttttaa<br>gtgatcaacagtggaaaatgttgccaaggtcaccagactgaggactgaagaaaagggactgagtggccaggatagtttggaatatagtcacagcagagca<br>gtgaggaagaaagccagatcatggaaaggggttaaagagcaaatggggccaggcgcaatggctcacacctgtaatcccagcactttgggagaggcggcga<br>gtgg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MMP20:NM:004771:6/10	
0	chr11	93622	93928	1001106	0	-	pAlu11-1104836; RIP_Alu_chr11_000_01	NA	NA	SINE	Alu	Yb3a1	tctttttttcctgtgtattatttccttcagggaccttatgcactcttacacatccgtctattatttttatatggattactatacaattacatgttgaatt<br>tgtacttttcccccatatatcctgtcatatgttttcacctgagcatctcaatatctaatactcttatttgcttaaaatacacgtgattattttctccacc<br>ctgacatattttatgttcaactttctaatttctaaaaatggacctaccattgtcctatttattcttgcttaaatcttgatattttctttgagttcatgct<br>ccttcgtattcactccagctgtgataagtcaccaatcctttgggtttttacttaccagtatttctatttctgtttctatagcctta<font color="green"><u>AAGCTGGAACTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGCTGGAACTGTG</u></font>tagtcccagttcctctgtgtagccccccaagtctgctctatttcaatcttctcttaagggaactccttccctccgtttt<br>tcttttcctccatttgatacatcacacttatagatagggcatcttccctaattactggcttcatcctcaattcccgggacccataccttcactggcttcc<br>taaatttatttaataattctcatatacctttgagaagtttctaatgataggcaacaaatgaatattgactacctttcttattttcctttattcaccaaaa<br>tgatttttaggatgtagacaatctgtatgcttcaacatacaccaaacttaccatttttgaaatattttacaatctacttgaaaagacttctttagaccct<br>atattca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	47017847	47018116	1001107	0	-	pAlu11-47049355; RIP_Alu_chr11_046_01	NA	NA	SINE	Alu	Yg6	aggtcgggttacccgcaaagggaagcccatcagactaacagcagatctcttggcagaaactctacaagccagaagagagtgggggccaatattcaacatt<br>cttaaagaaaagaattttcaacccagaatttcatacccagtcaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctga<br>gagattttatcaccaccaggcgagcccctgaaggaagcactaaacgtggaaaggaaaaaccagtaccagccactgcaaaaacatgccaaattgtaaagac<br>catcaatgctaggaagaaactgcatcaactaaagagcaaaataatcagctaacatcataatgacaggatcaaattcacacatt<font color="green"><u>AACAATATTAACCTTAA<br></u></font><font color="red">CTTTGGGAGACCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC<br>CGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTAGACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATTG<br>CACCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAATAAAATAAAATAAAA</font><font color="green"><u>AACAATATTAACCTTAA</u></font>atgtaaatgggct<br>aaatgctccagttaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctatattcaggagacccatctcacatgcagagacaca<br>cataggctcaaaataaagggatggaggaagatctaccatgcaaatggaaaacaaaaaaaagcaggggttgcaatcctagtctttgattaaacagacttta<br>aaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatacgcacccaa<br>tacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C11orf49:NM:001003676:2/8	
0	chr11	27822230	27822418	1001108	0	-	pAlu11-27861288; RIP_Alu_chr11_027_02	NA	NA	SINE	Alu	Yb7	acactttcaaccaattgccaatcagaaaaattttaagtctacctatgacctgaaagtcccctcacactttgtctcgcccttccagattaaatcaatgtaa<br>atcttacatgtatttgattgatgtcttctgtctccataaaatgtataaaactaggctgtgactcaacaccttggacacatgttcttaggatatctcgagg<br>gctatgtcttgggccattggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttaactgttttcatcaacaagtccattgagtg<br>cactgagaacaagggggtggcatgtcatcattctgacccctgggggtgaattgtcttggaatacacacacatgaaacctaaacataaaaatgt<font color="green"><u>GGGGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGC</font><font color="green"><u>GGGGCTC</u></font>agga<br>agcaccttccatattacagtataactctagtgtgattgagacaagagaggccctatggaggactccattcatggactggtcacattactagaaaggggcc<br>ttgagggccacttctgagttaagaggtaggtgtgtgtgtgtgtctgtgtgtgtagagcagatagtactcagttggctccagcaacctgctcccaccacca<br>ctagcagaacccagtcacatcccaatctgacttgaaccagagaggccccagttttagttgacctactcttgtcaaactcagcaaagactttcatgctgtc<br>aagtcaattctcagtcctttccttaacttgtcttttagcccaggcctctatccttgaccatcccagctgggagtgactatgtttggagc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	32963616	32963914	1001109	0	-	pAlu12-32863776; RIP_Alu_chr12_032_01	NA	NA	SINE	Alu	Ya4b	tataatgctgatgaaacatcactgttttggcatcattgcctcagaaagacactgactacagctgatgagacagcacctactagaattaaggctgccaaga<br>acagaatatgctgggatgtgctaatgcatcaggcatacataagtggggtgatagataaaaacttgtgtcctcactgttttcaaggagtgaatttcttacc<br>agtctgttattatgctaacaaaaagacctggagcaccagggacatcttttttgattggtttcacaaacatttggtaccaagtggctcatgcttgctgcag<br>ggagactcaattggatgatgactgcaaagattttgttattacatgacaactgttctgctcatctcccagctgaaattctcattt<font color="green"><u>AAAAAATGTTTATTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAATGTTTATTCT</u></font>atgtactttcccctaaatgtgacttcatcaatttagccatgtgaccagagtatccttagatcaataaagagtagattaaaaaaac<br>acttttcttaaatagcatgctagctaccagcagtgtgcagaggtgtgggtgtgagaaagtgttcaaaaggagtttagcctgaggatgctctatatgctgt<br>tgccattgcttgaaacaggtgtgcatgactggcacaactctggcctacaactatgtcgactggtaatgaagtcaccagatggtgactttgaaggattata<br>tatgtcaagtgagaaaaaaaaatgatggctgaactccttacctttgcaaaaaaatagaccttcacaatctgtcagttagctggaagaagtgaatactaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PKP2:NM:004572:10/14	
0	chr12	41659832	41660133	1001110	0	+	pAlu12-41376478; RIP_Alu_chr12_039_01	NA	NA	SINE	Alu	Ya4b	ttagcataggggcagctgctgactgacccaaggatggactagacaaaggccattcacacttttttcttagccagatgcatgtaccacttgtacttagtta<br>tttcattgcatcatatttttaacttaaatcaatgtattgtaaaggatactattatcaattgcaaaccagaatgatgtgccataaatatcagggtaccata<br>aaaataaacacaggggaaatagtttacattgaaaaaagaaattaaacaataaaaataaattatgatggctctaatatctacgtaaaatgcatagctgaaa<br>ataagttattcaaatcaaagcctttttcttctcggttcgtaataaaatgatttgctttcacccagtgttgcttcgttcatgtctt<font color="green"><u>AAAATGAGATATTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAATGAGATATTAA</u></font>aatcaataagttaattgcatttttttcctcttggtattgatactaactgaaactgagaatcccattttacctgtgcacctagt<br>tggatattgggagctggactgcaatttacattttcaattacagtcagtggtcctctgagcagtaggaagcaaatatgaagcaggaagctagatcccaggc<br>tactctttgacccaggtcaggaactcaccttaggaaaagatactttaagaaatctaagaaattattaaagaagaatggcacaaagaccaattctggcaag<br>aatggaagtgggggtagtagttggttgttctaacattttagctttttagtccactcataatcttagactgatctgttttttaaatcagtgaaggctgtgt<br>aa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PDZRN4:NM:001164595:3/10	
0	chr12	20862534	20862857	1001111	0	+	pAlu12-20762700; RIP_Alu_chr12_020_01	NA	NA	SINE	Alu	Yb7	taaataattacacttttgtctcttctccaacagagtctcaataggtacagaccacatccatagctctcattttacaactcagttaattaaaacctaaacg<br>ttaatttttttagagtatcacagatagcaattagtaacaaaagtggctcttagataagctgccagttatttgaaatcaaaataattatgatgcttgcaac<br>agtaacctgttgacagaaggaactgagttaaaataatgaaaaattttcaaaatactccatgatcaccatccatacttacttcaatagtcttgaagcatca<br>taacagtcaatggtttctctgtaattattaacaatataaaattatatttaccatgatttcaatgctaaatgttctcatgtgtagtt<font color="green"><u>AAGAATTGAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGAAAACAG</u></font>gttaacctcattaagtgattcttaacctactatggtcaaggaaccctttgataaaattata<br>aaacctgtaaccctcttctcttaagcattcacataaaaacatacatacaaaaatgttcttactttttcagtggggttcatgaacccattgaggtgcagat<br>tgcacaaaacagatttaaggtaacctgtttatcaacttgaatatttcagtaatgcaatacatcttttccttaccatgctgaataaacagttctctacttt<br>tctttttttttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagtgcaatggcgcgatcttggctcactgcaagctccgcctc<br>ccgggttcacgccattctcctgcct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLCO1C1:NM:017435:4/15	
0	chr12	83959231	83959533	1001112	0	+	pAlu12-83892078; RIP_Alu_chr12_082_02	NA	NA	SINE	Alu	Yc1	tacaatagaagaaaatcatggacatcttaaatgggctaagggtttacattttaaatatgatggccatggtagaccacatttaaaggacatttgagaaaag<br>acttgaatgaggtaagaggattagcaatatgaaaataaggggaagggtagtctaggcagagggaatccagtgagccagttactcttctgatacctgcaaa<br>aagaggatgaaaattggtaattggtgaaaatacagatgggatttggggtagaatgtgttcatgcctagttttatcacagaataggaaacaaatttatcat<br>ttgaggatgagttgaagatatatgaaaattggtaaaacgtatgagagtcattgtgggaaagaaaatgggagccaactagggatacat<font color="green"><u>AAGACTTGTACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAA<br>AAA</font><font color="green"><u>AAGACTTGTACTC</u></font>agcagggatttgggctgggaagagaataatttttcattttccaaaggatcattcgtgcagttgagcaattttctacaaaatgct<br>ttttggagtagacgtggctgagaagggggtgacatttgttcattacacactacctgtagcattttgtgggctgttctatattgcaaacactagtgtacaa<br>ttattagttttgcatatgaggtagcttagattcaaacagggtaagctggctgatgttaaacatattttcaggttgattttaggtgatgttatcatataat<br>aaggtaaaaatgctagaggaccatgctgatgaaagaacagatgataaaagtgttaatgtatacagacaagtgtgccaacaggtggtgatccaggggcagt<br>gaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	27434004	27434322	1001113	0	-	pAlu12-27334173;Ya5ac2145; RIP_Alu_chr12_027_01	AAAACGTCAGAGCAGGGATG	GTTGCCTTTAGGAAGCTACAGA	SINE	Alu	Ya5	gtgctgggattacaggcctgaggcaccgtgcctcgcctcaatttactctttgacagaaaatttcccagcttagatcatgattatctggaaatcaactaag<br>cattatccttatctccatccttatcaccactgttgttgtcatggataccatttataaaacaccttctctgtgccaggcagtactgtgtgcattatcttat<br>gtaatcttcacaacaactctatgaggtaggtactatttctccattttagaaactggaaaccagggcacagagaggttatttaccagaggcctctcaactg<br>gaaaacgtcagagcagggatgtgaaccctgttcactctagagctgttgttctaatgaccatgcctactttttacaaccagagtcagtt<font color="green"><u>AAACAAAGCTAA<br></u></font><font color="red">AGCCGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA<br>AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACAAAGCTAA</u></font>agccaaaaataaatctgtagcttcctaaaggcaactcaagataattactggtcttctcttacatgatca<br>ccttatttattcttagtaaatcttaaatggttttataattccttgttttaaagaaacttaaaaggatcaactcgtctaaccttctaacaaagacaaggct<br>gtgttgctgtgcctgattcaaactgcccttcttgcccaaacagctctgtacgctttttaaagagttttataagctgttggaaatctatgcaattatttca<br>gactatttaaaatatgtgttgtctatcttatgctgtcttcatttacttatctaaataggaaaaaagtatcagaatgctttctacatgaacaggaagacta<br>accaacgttgaatggcagc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA, Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID: 15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	465	135	NA	intron:STK38L:NM:015000:1/14
0	chr13	19476811	19477098	1001114	0	-	pAlu13-18406708; RIP_Alu_chr13_018_02	NA	NA	SINE	Alu	Ya5a2	ttgtattaaccccttgcctgatgcatagtttgcaaatactttcttccgttctctggattgtttcttcattctattgatggctttctctactttgcagaag<br>cgtttaagtttaatgcaattgcattttgtctatttttgctttttgttgcttgtgtttttgatgtgtatttgaaaatcccttgtcctaaccaatttcatga<br>ggcattttgctgttttcttctctagtagtttcatagtttcatgtcctacatttaaatctttattttcagtagatggtaagataacagcctcgatgtattc<br>ttgtacatgtgggtgttgggttttcctagcacagtttattgaagagattgtccttcccgaatgtgtgtttttggtgcctttgttaa<font color="green"><u>AAGAGTTGACTGTA<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT<br>TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTTGACTG<br>TA</u></font>aaagcttgaatttatttctgagttctctattctgtttcatttgtctatgtctgtctgtcattcgtctatgtatctctgtctgtctctctctgtctgtc<br>ccctacctattttttttctttggccactaccatgctgttttggttactagatttgtggtatattttgaaatcaggtagtgtgatgcctccagcttttttc<br>tttttattcaagattcttttgtctatctgaggtattttgcatttccatgtgaattttaggattttttttttttttttttttttttttttgagacggagtc<br>tcgttctgtcgcccaggctggagtgcattggcgcgatctcggctcactgaaagcactgcttcctgagttcaggcgattctcctgcctc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	60172500	60172823	1001115	0	+	pAlu13-59109036; RIP_Alu_chr13_059_01	NA	NA	SINE	Alu	Yb7	gacttccatctcatcagaagtctataacaaagtgtgcccctttactgctgggatggtgtgagagaagagcgagtgtgcagccagagcttccaccaacaac<br>cggtggtaactagagctccctctaccacccatggtgtcagtgaaggccacatggggagcctgacctcccagccctgcccagcagtaatgaggtaccctcc<br>cccagggtattaacggaacttggacatctgccccaacctgacattaactgagtggcaccaccatcatggtgtcaaaagatatctgctaaaacacaagatt<br>taaataaaattcagagtcccatgatgcttaaaatgtccaggaaaaatttgaaaatcatacaaagagcttaacttgaatgaattaatgaatt<font color="green"><u>AAGATCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>AAATAAAAAAAACAAAACAAAAAA</font><font color="green"><u>AAGATCATC</u></font>aacactcctcccacataagtggtagagatggtgacagtatctgacaaaaattccaaagtagccatga<br>gaaaaaatgtttctatgaacatggtttaaacaaagggaaaaaaaagtttcagctaagaaaaagaagatataaaaaaagaacaaaatggaaattttaggac<br>taaaaatacagtagctgaaataaaaagctcagttggtgggctcaacagcacagtagagatgacagtcagtgaactgtaagagcaatagaaattgcccaat<br>cagaacaatagatagaaaaaataaactgaaaagataaagagagccttaggggtttatcagactataattaaaaatttaacatttatatattagtccgttt<br>tcacactactgataaagacacatc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	63656194	63656510	1001116	0	+	pAlu13-62592730; RIP_Alu_chr13_062_01	NA	NA	SINE	Alu	Y	aacaaaactgtcagccaagaatcctgtatgtgtcaaaatgaccatttaaaagtacgggagaaactaagtcagtttcagataaatacaagctgagaaagat<br>cattaccactagctttgccctgcaagaaatgctacaaggaatattgcaggttaaaatggaaggacaatagacaataactcaaatctgtgtgaagaaataa<br>atattgcagtaaaagtaaatgcatgagcaattataaaagctggtattattgtaacagatttgcaatcatattttgttttctacataatttaagaaactaa<br>tgatttttaaaaatctttagctaaaaatattaaacaattactaggttatggttttggacatgatgaatgaagatggaattttgtgacatc<font color="green"><u>AAGAACTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACTAAA</u></font>atgattggggacagtgctgtaaagttttgcatgtcatcaaagtttgagtattataactgtaggatgctgatta<br>taatccccatggtcaccaaagaaagagtatagaatttaaaaaaaggaaatgagaaataaaatatttcagtacaaaacaagaactatacacaaaagaagac<br>agcaatacagaaaattaggaacaaaaaagctacaagtcatatagaaaacaaatagcaaaatgatagaagtatgtccctttgtcaaaattactttagatat<br>aaaaggtttaaactttccaatcaaaatgcagagattggcagaataggtaagaaacaataatccaactacatgctgtctaccagctactcacttcagatca<br>aaagtcaaaaataagtt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	81747255	81747564	1001117	0	-	pAlu13-80683790; RIP_Alu_chr13_080_01	NA	NA	SINE	Alu	Ya5	aaaaatgatggaagagtgtgattaatgataaatgaacttctattatctgccagttactttatatatgcaccagagtcaatgcttaacacaactgctggaa<br>gtaagaactgctaaatttgttttcctgtgatgaaatggaaattcataaggattataatatttcattgaattgaaaaccaatcctattcattgaaagacac<br>gtatcaccttactgccaggagaaacagaaaatgctgccaaacatgactgtaagacttatctgtagactggtactgactcaaaaatgttattctggtagga<br>tttaggtgggtaaatgataccggtaggatgggttgggtggcccatggagtaatgccaggtagtaaagcacctgtttaaggca<font color="green"><u>AAGAAGTTGGTGAGCTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGTTGGTGAGCTGA</u></font>atctattcccaggcctctctgactccaaagccctgattcttacattgaacctcacggcctcagctatcttca<br>caaaacaggatgcatttgacattttcctatatgagaactcatcttttccttgatggcaccagcagtctttgtaaccttcatgtggaggaaatcaaagtgc<br>atggcagtgtattaatcagaaaaatggattgtgcttgcctcctcctgccaatcacttgacaaggaaaaacagatagcaaagattaaatcacagcttgctc<br>aaatgctccacacttgaaataaatacatttcagctttcacgaaagtccattatgcactgtttggctttgattagcagggggcatttcataaaacatgaaa<br>gaaaggtaca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	91160053	91160289	1001118	0	+	pAlu13-89996590; RIP_Alu_chr13_089_03	NA	NA	SINE	Alu	Yb7	attaaacctaatgcaaccactgaaatcatgtcatagcattataaatcataagcaacttaagagaaaatgaaatcataaaactatgtaagtactctaaaat<br>aaaaaagaaaggaaaaagagataaataggatatataaaaaagcaaacaggaatataatagagctaaactttattatagcaattatcacataaaatgtaaa<br>tagtttacacactcaaaagagattttgaaaagatccgactatatgctgtcttttgaataaagaaacaaatcagttaaaagtgaataaatgaaaaatatat<br>catgctaaccaaaaaaagctgatgagtacattacagtaagacaaagtagattttaaaacaaaaaactccaatattatcaaaatgataa<font color="green"><u>AAGGGTTACTTT<br></u></font><font color="red">AAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGC<br>TACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGA<br>CAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGGGTTACTTT</u></font>atcataagagcaacacatggttacaatcatgcttacatgtaaacaaatata<br>tttgcacatttaaaataaatgaaccagccactaataaaactgcaatgagatatagataatgccataatttcagtttgagatttcaaaggagctcacaata<br>attgattgaacaagtatataaagaccagtaagaatacaccgaccaacttgacgacagtagtatctatagaagcctgcatccaacaaaaatagaaaacaca<br>tactatttaggtatacatggagtacttttgggcatagaagttaatctgagccataaaacaaatatcaatgaatttaaaaatatcttttctactaataatg<br>gcatcaataacaacctaccaaatcacaaaatatctag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	113790950	113791263	1001119	0	-	pAlu13-112877490; RIP_Alu_chr13_112_01	NA	NA	SINE	Alu	Ya5	caacccttggcaaaccctgtcccaccactaatctattctttatcacaatgataacaacctattgagcatgtcatgtaaatgaaagtgtttattataggac<br>cttgtgaaactagcttttcattcaatacaaagcctttgaaattcatgcaagttgtatcaatactttcttacttgttgttgctgacaactgttatattgta<br>tgggtacacccagcaaaagacatttatcttacttccagcttttggcaattaagaatagagttgctggccaggcgtggtgcctcacgcctataatcccagc<br>actttgggaggctgaggcgggtggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaa<font color="green"><u>AAGTACAAGAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGTACAAGAATT</u></font>agcctgccatggtggcacacacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctg<br>agaggaggaggttgtagtgagccgagattgtgccattgcaccccagcctgggcaacgggaagactctgtctcaaaaaataaaaattaaaaaaaaaaaaaa<br>agactagagttgctatagacatttatgtacaggattttatgtggaaataagttttcatttctctagggtaaatgcccagaaatgggattgccgagtcctg<br>tggtaaccttatataactttataagaaactgtcaaattccttttcaaagtggccgtgccattttgcattcccacgagcagtgtatcaaagttctgctttc<br>tccgtgtcttaacc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:F10:NM:000504:2/8	
0	chr13	63523817	63524119	1001120	0	-	pAlu13-62460348; RIP_Alu_chr13_062_02	NA	NA	SINE	Alu	Ya5	gagtttgtaggtatactgaacatcattttctgaattcttatgcaagaaagaataagctagagtttttgttctgtctccttaaaagtgggattcccaggaa<br>ataagcctaattaatgggctttaattatacatcacgtattaaataggagagtggaagaaaatttgattgacaaaacccattgattgtgggaggggtggat<br>gtttaaaaaaatggaaaaccaatgctgaattgcaaaagttttgttaatgtataattcattttgaaatctcaacttcatttacatttttagtaacactacc<br>aaaaaattaatcaactcattatcttcatttcattttaagggaaaatggaaaacaactgccatccttatattataatcttcaatttat<font color="green"><u>AAAAATCTTCCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAATCTTCCAA</u></font>attttcgataaattcttgaaatttcaaatattttccccataacaacctttgtacctgatcaagaacagtgatatattatatatg<br>gacaataatattattacccatttatttagtatgtagatcaggggtatatttctatgggaaaggaatagacaattaaatattgaattttatgtgtcagaaa<br>tgctattgtatttaataattaaaaacatgctttgagacacgcattaaaattatcgatttattaataagatagaaacaattcaaagagattagtttcttta<br>attactcacaataagaaggaagaatatgaatgaaatataaaattatttcctatacactcctctattttattctgttagattatttagaaaatagaaacag<br>gaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	64377103	64377399	1001121	0	-	pAlu13-63313637; RIP_Alu_chr13_063_02	NA	NA	SINE	Alu	Sg	actgcttttcttctttttctgtaaataaatagctgtaccataccactggagcctagtgtacatgtcttcggttctcagtgaccccaaatcatgcaggtct<br>cttccctgggtggcattcatctgcttgttaaccttggccgcactcattttatattctgtcctgcagcacagcttgaccgccccgtgaacagtgaaacaca<br>gctatttctaaaaagtattttggtaaactctcttggaaggaacaaaactagtgtttgttggtcttctatattaccatgtgaaactgagagtgttaaggca<br>caactactgcaggtagttgctaagtgatgtcagggaaacttgtgcacctcttaaaaatgtgaacaactcaaagttgtgctgtattca<font color="green"><u>AAGTTTAAAATCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAAGAGTTCGAGACAAGCCTGACCAACATAG<br>TGAAACCCCGTCTCTACTAAAAGTACAAAAATTATCTGGGCATAGCGGCGCGCGCCTGTAATCCCAGCTACTTGGGAGGCTGGGGCAGGAGAATCGCTTG<br>AACCCGGGAGGCAGAGATTGCAGTGAGCCGAGATTGCACCACTGCATTCCAGCCTGGGCGAGAGGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>TTTAAAATCA</u></font>agcatacagcttcaaatattttgacacatgcttttaaacaagagtttgtccaagtaggctatacatcagaaaaatctagaggctcagaac<br>ataccttgcaaatagaattgtaaaaaatgtagcctaagtaaaagcagataaaatcttctgattgaaaaaattactgcatagcattgggcaattttttttt<br>ttttgagacagagatctgtactgagaaactattatatacaggaactgaagtcatcatttggggtacactagagtaaatagaaaacaaaaataggaaaaag<br>ataaaagaaaaaacaaaatatatgaaggtctccatctttgtgtgttttatattctggataggagagatggattataaccaaaaaagtacaatcagtt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	52267800	52267801	1001122	0	+	pAlu13-69295551; RIP_Alu_chr13_080_02	NA	NA	SINE	Alu	Ya5	attgtgatcttagggtgtcaattttggatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacccacacactgctttgaatgtgt<br>cccagagattctggtgtgttgtgtctttgttctcataggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtagtcattgaggag<br>caggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttctagtttgattgcactgtggtgtgagagacagttcgttata<br>atttctattcttttacatttgatgaggagtgctttacttccaactatgtggtctattttggaataggtgtggtgtggtgctgaaaaa<font color="green"><u>AATGTATATTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AATGTATATTCTG</u></font>ttgatttggggtggagagttctgtagatgtctattaggtccgcttggtgcagagctgagttcaattcctgggtatccttg<br>ttaactttctgtctcgttgatctgtctaatattgacagtggggtgttaaagtctcccattattattgtgtgggagtctaagtctctttgtaggtcactaa<br>ggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttatcattatgtaatg<br>gccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccatttgcttggtag<br>atctttc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:WDFY2:NM:052950:3/12	
0	chr13	96633437	96633740	1001123	0	+	pAlu13-95469973; RIP_Alu_chr13_095_01	NA	NA	SINE	Alu	Yh9	ggtcaggagttcgtgaccagcctggccaacatggcgaaaccctgtctctactaaaaatacaaaaattagccgggtgtggtggcgtgtacctgtaatccca<br>gctacccaaggaggctgaggcaggagaattgctggaacccgggaggcagaggctgcagtgagccaagatcatgccactgcactccagcctgggtgacaga<br>gcaagactccatctcaaagattcttcctgtttccttttatatttgtgggcaggatgtttcttttatttatgtatttattttaaactaaatgtttcttatc<br>tcctctactcgaaggtcatatcctctttatctccttaagtaaagccaggagctctgcagtacccccaagtgagaaaaattatgctt<font color="green"><u>AAGACACTTTTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGACACTTTTGTT</u></font>ttagtttagtcccagacccagaggaaaatccttcaaatttcttaagtaaatccttaaaaagtgtaatttacaccagagcaat<br>tgacctggtgtaaataaactgcagcatgagaagaagaagaaaaaaagaccattattacttcttttttcggtgaacattttgtttacatgttttgcaggaa<br>atgtacttttcggtttgtatggatgagatgctgtaacagaaacacatttccagggctttctcgtgtccaatccgtgtgcaatgcaattgcaatgaatagt<br>ccaagattttcttaccttctcatcacaaccaccctcttccccaaggttggaacttcagtttctttaattacttctcccacatctcatgagctagtgggta<br>acat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:UGGT2:NM:020121:10/39	
0	chr13	101242078	101242381	1001124	0	-	pAlu13-100078613; RIP_Alu_chr13_100_02	NA	NA	SINE	Alu	Ya3	ggagttcaagaccaccctgggcaacatggtgaaatcctgtctctaccaaaaaatacaagaaactagccgggcgtgatggtgggtgcctgaggtcccagct<br>actcagaaggctgaggtgggaggatcactcgagcctgggaaacaggggttgcaatgagccaataacatgctactgtactccaacctaggtgacagagtga<br>gaacccatctcaaaacaaacaaaaaattcgtctagtctgcgtcatctttaattttcctttatcagaagaattatttatctatttgtctcactttcctttg<br>ctgacatgattttcccccctcaaaaaagagatgaaagtggaatcattctttcgcttcaaaaagttaagaattactgctgtctttaaa<font color="green"><u>AATATTAATATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAACATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAACCAGATCCCGCCACTGCACTCCAGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AATATTAATATGAG</u></font>gctagacaaggttttttaatacatttcaatttaattatgaagtgtccaagacaagaaaaaactgtgaaaaccaacgacttat<br>gtacctgatggtttagatttcttttggaattgtacatctgttcaaaatacaattacatctgcattgttggaaacgtttggataaaaaccagtttatataa<br>aggtttcaatcagtccacatccatgagaaagtagaaagggcaggaaatgattaagggggattattgctaatctgataaacacagatttgtgtctttcgga<br>gagacagaagtgtcactctctccatagctgtaccattcctaccacctggcccccaagtggcattgctttaacccattgtctctagggaaaatgttctctt<br>tcgat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	99678281	99678351	1001125	0	+	pAlu13-98514816; RIP_Alu_chr13_098_01	NA	NA	SINE	Alu	Yb9	atggaaaatagtctggctgttcttcagatggttaaacccaggttaccgtatgatccagcaattccactcctagatgcccaacgttgaaaatatatgttcc<br>cacaaaaacttatacatgaatgctcttagcagcactgttcataataaacaaaaattggaaacaacacaaatgtccatcaattgataaatggataaacaac<br>tacagaatacaatgaaatattatgtaccaacttttaaaaaatgaagtatgatccatgccacagcatgggtgactcttaaaaccatgctaagtgaaagaag<br>ccccgcataaggatcacatagtgcatgaatccactgctatgaaatgtccagaacaggcaaatatctagagacagaaagcagatt<font color="green"><u>AACAGTTCCCTAGGGC<br></u></font><font color="red">GCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAGTTCCCTAGGGC</u></font>tagggggttgggt<br>ggagcagagttccggggtgatggctaaggggtccagtgttcttttggaaagtaataaagatgttctaaaattgactatggtgatggatgcacaactctga<br>atatactgaaaaccactgaacattttaaatggatgaatcatttcatgtatgaatcatatcctgataaaggtgtttctttaaaaacaagacagcacatatc<br>agagggtacatcaatccaaagttgaatttctcttgaaagtaccctaatttcaataccgttatctttccaaaacatatcactaccctaacacagcaaatgc<br>ccaaaagcactcctggcactgcatatgcagaagagaggacagctaagaatggtaagatgatttcttcatca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DOCK9:NM:001130049:1/33	
0	chr14	31263001	31263314	1001126	0	-	pAlu14-29252942; RIP_Alu_chr14_030_01	NA	NA	SINE	Alu	Ya5	ggacaggctgactctcttgtttggggctaatgaagctggtgactttaagttgaagccagtgctcatttaccattctgagaattctagggaccttaagaat<br>tgtactaaatctattctgcatatgctttataaatggaacaacaatccctggttgacaacatacttgtttttagcatggtttactgaatattttaagcctg<br>ctgttaagatctactgctcagaaaaatatttcaaaatatactgctcattgacaatgcacctatcacccaagagttccgatggagatgtacaagaagatta<br>atgttattttcacgtctgctagcacaatatccgttcttcagccatggatcaaggagtaagttcacctttcaagtcttattgttt<font color="green"><u>AAGAAATACATTTTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATACATTTTGT</u></font>aaggctttagatgtcataggtagtggttgttctgatggatctgggcaaagtaaactgaaaaacttctggg<br>aaagatttgccattgtagatgacattaagaccattaatgattcatgggagaaggttaaaatatcaacatgaacagaagtttggaagaagttggtttcaac<br>tcttatggatgactctcagggattcaagacttcagtggaggaagtaactgtagatgtggtggaaatagcaagagaattagaattagaagtggagcctgaa<br>gatggagctgacttgctgcaatctcatgatcaaacttgaagggttaaagagttgctttttatagatgagcaaagacagtggtgtcttgagatggaatcta<br>ctcctggtaaagat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	34290049	34290374	1001127	0	+	pAlu14-32279987; RIP_Alu_chr14_033_01	NA	NA	SINE	Alu	Yb10	agaagccactcattatcatgagaaatcactgtgaaaagactcagaaatatttaaaatctgtgtattttctgcattctctgtctccaggagcagaacttca<br>ctggaaccagaaaactgctgcgaggacacagaatcagcaaaaggggagtcagatgaagctcctgttttcacatcaggtgcacaacaggaacactcttgcc<br>tttgggactggaatttctggaaatgtgttggtgaattctcccactccaagggacagagctcgtatgggattttcaaaacaggggtcttgggtgattctcc<br>ttttttctatgcttcccacagctcactaagccctctgctttggatgtttcatttctttaaatatgttaatgcaattatacatgcatt<font color="green"><u>GAAAATTACAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAAT<br>GGCGTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTACAGTC</u></font>ttgcaaggctggacaccagtcttcatctgcatgacaaaactttggtctccacaacctccta<br>tcttaacccagacattgctttccattgataataactctttcaaccaattggcaatcagaacatttttaaatctacctagaacctagaaccccactcctgc<br>ctcttcgtgtcccacccttctggaccaaacctgtgtatattttcatggtatttaattgaagcctcatgtctccctgaaatgtataaaatcaagctttgtc<br>caaaccaccctacgtacatgttctcaggggctcctgagggccgtgtcatgggccatggtcactcatatttggctcaggataaatttcttcaagtatttta<br>cgtagtttgattcttttcatcaacag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	46342413	46342726	1001128	0	+	pAlu14-44332350; RIP_Alu_chr14_045_01	NA	NA	SINE	Alu	Yb3a1	tctcttgaagaaactcaagagtttccttattttctgtgctttgaggagggcccaagtcctctaagatgggtccctgctttgtttcaaaatgagtatgaag<br>aatgcgaggtatgaaaaactcataaggcccagaaaaatatgagaacaaatcctcagtcacccctcccatgctagcaccagtgtccctgggcaattgttta<br>aaggtattttatttcttccttgtagttttcaggctagctgataaattacctaaaatgcaattataagttgcacaaggtgaccctcactcattatctttat<br>gttcctgaaatttttgatacaaaaataatgtatagccaatcaatagcttatgatcaacttaagaactgctccttctttttttctttaaaaag<font color="green"><u>CCACTTGT<br></u></font><font color="red">GGCCAGGCACAGTGGGTCACACCTGTAATCCCAGGACTTTCGGAGGCCAAGGCGGGTGGATCACAAGGTCAGGAGATAGAGATCATCCTGGCTAACACAG<br>TGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGGGGGCATCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCAGGAGGTGGAGCTGGCAGTGAGCCAAGATTGCGCCACTGCACTCTAGCCTGGGCGACAGAGTGAGACTCCTTCTTAAAAAAAACAAAAACAAAA<br>ACAAAAACAAAAAA</font><font color="green"><u>CCACTTGT</u></font>aactgctgttaattagaggcctggcaattcaggccaacttaaatctgtgtctccttggttgcagtcctcaaatttggt<br>ccaaataaactctctatttatgttaattttgcttcagtttcttcctttatgttgacaaagtccaaagactaaatctcagttttatagtcttacaacttca<br>gaagtctgctgttgtgtcttgttttctaactgctttatatgaattctccagtgcaataatacattttttttttttttttgagatggagtcttgctctgtc<br>acccaggctggagtgcagtggcgcgatctcggctcactgcaatctctgcctcccgggttcacgtcattctcctgcctcagcctcctgagtagctgggact<br>acaggtgcctccca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	46577938	46578243	1001129	0	+	pAlu14-44567875; RIP_Alu_chr14_045_02	NA	NA	SINE	Alu	Ya5	atttctgagcctgtggaggtacagggggcattcctgggcctccaagagtgtggagatgcctgggagtggccgcggcttggacaggtgcagccatacccag<br>gagggtggggctcctggctgctcccagcccctaagagcacagatagcctaggatagcctaaggagtgtgaagctcccaccctgccaactcagaaggggtc<br>agggcttctgcctgttctactgctcctgcaagctctgtggagcacagagccctggccaagccttccccactgaagctagtgtcatggcaatggccactct<br>ggatgggccacagctgccattagtattgcagatgattgagataaaaaaatcacctaacaagtggaagaagagcaaaatggctgaat<font color="green"><u>AAAAGCCTCCAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGCCTCCAATTG</u></font>gttcccccagcaggaacatgaaactgaataactattcacataagaaagcacctttgtaagaaccaaaaatcaggtgagc<br>aattacggaatctggttttaatatcatgtcaaagaaaaaggcactgaagagggtaagacagtcttgggttgctgacacaactcctaccctatgctttccc<br>tgtggctgcctggtggagagagaatctgtgtgtactgaagagcacaatgattgtgggaatttgcattgtaactgcatgctgccatgttacagcagaaagc<br>agcacaaggaataagagggatgattcctctctgttctgcatgctcttattgcttattggtctgtatgatccctccagtcccatagaaggagcatgtagac<br>cagaggg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	57373140	57373422	1001130	0	+	pAlu14-55363036; RIP_Alu_chr14_056_02	NA	NA	SINE	Alu	Y	ccccacgggagaaaagttaatggatgatgaggaaggagagatgttggactactttgagaagcttgattatgaaggagagggacagagcagtggcttaagg<br>actgcaggatgtgaggacagttttgtttaggtctgagtttggaaataattgaagatagggctatattcagatgacccagaatggaagatggaggttctga<br>ctgctgactgctggcgtttgtgtgtgtgtgtgttctaaagtagaagatgaagtctgggggcttcaaggataaatgattcagaattgttgttgagagactc<br>agaagaggtatgtgactgagatggagaaaaaggattataatt<font color="green"><u>GAAAGGCTATGTGAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGA<br></u></font><font color="red">GGCCGAGGTGGGCAAATCATGAGGTCAGGAGATCAAGAACATCCTGGCTAACACAGTGAAATCCCATCTCTACTAAAGATACAAAAAAAAAAAAAATAGC<br>CGGTTGTGATGGTGGGCACCTGTAGTCCCAGCTACTTGGAATGCTGAGGCCAGAGAATGATGTGAACCCAGGAGGCGGAGCTTGCAGTGAACCGAGATTG<br>CGCCACTGTACTCCAGCTGGGGCGACAGAGCGAGACTCTGTCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAAAA</font><font color="green"><u>GAAAGGCTATGTG</u></font>cttg<br>gaccatgcagacaaaagccacccttgataaaagcaatgggcttttcctttaggggaattcttcattcacgtatgtatttatcattcaacaaatatttatg<br>aatgcttgccatgtgccaggcaccattataggtctccaccagcagtggtccccaaccttttcgacatcaggggccagtttcacagaagataatttttcca<br>tggactagatggggggatggtttggggatgattccagcacattacatttattatgtactttatttctgttactattacgttgtaatatataattaaataa<br>ttatacaactcaccataatgtagaatcagggggagccc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:OTX2OS1:NR:029385:3/4	
0	chr14	74666838	74667144	1001131	0	+	pAlu14-72656778; RIP_Alu_chr14_073_01	NA	NA	SINE	Alu	Sc	taatctgttacagcttcaagcaagaaagtcagtatagcctgaaagacaagagaaacgggatggtttataggagttcccatttggttgaaagctagaagcc<br>ctaattgaccttaaagtaacatgctatgggatggtgggattgtcccctctgacagcacatatgaaatagttcatctatataatagaaacgcacacacacg<br>aaaaagaatcttctgacttaaatacaactttcatggagttcttcaccacttatctgtctctgttaaaatctgaaaatctagcccatggctaaaatctatt<br>atatgtgttctccatatttcttgtataagccagtccccagcatctgatgttttgagaagtgcatggagtttcctaaactttgcacaa<font color="green"><u>AAGAATATCCTGG<br></u></font><font color="red">GGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATAGGTCAAAAGATCGAGACCATCCTGGCCAATATGGT<br>GAAACCCTGTCTCTACTAAAATACAAAAATTAGCTGGGCATGATGGTGCATGCCTATAGTCCCAGCTACTTGGGGGCCTGAGGCACGAGAATCGCTTGAA<br>TTCGGGAGGTGGAGGTTGCAGTGAGCCGAAATTATGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAGAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAATATCC</u></font>tggcaatagtctgatggtgtttggacacaagaaaagttatggttttgagtcgtgagtgtttgctagggcatggcactcttcag<br>tttaacagctgatccattaaaccttttctgacatttgtgccttgttctcatgctagaattaatgctggatttttctctcatttgaccatcaatgtagttt<br>tacttattgaaaggaaaaaagacttaacacaagataggaaagatgagtatgagaagtaaaacattctgctggggtgctacatagaaggttaggttgtagg<br>ggctttgattttaatttaaacttattatcgattgatatttctgtatctcactaaatgcggttgaagagtgtgtgtgtgtgtgtgcgcgcgcgcatgtggc<br>caaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	downstream:LIN52:NM:001024674	
0	chr14	35401414	35401723	1001132	0	+	pAlu14-33391352; RIP_Alu_chr14_034_03	NA	NA	SINE	Alu	Y	agggttaatcctttcctgttttaatgtgtatgatacgaagtgtatctgcctcaatttttatttatttattttttgagacagagtcttgctctgtcgtcca<br>ggctggaatgcagtggtgcaatctcggctcactgcaatctccgcccttggttcaagtgattctcctgcctcagcctcctgagtagcagggattacaggtg<br>tgtgccaccatgccaggctaatttttgtatttttagtagagatagggttttgtcatgttggccaggctcgtctcaaactcctgacctcaggtgatccgcc<br>caccttggcctcccaaagtgctgggattataggggtgagctaccatgcctggccctgtctcaaattttagtgcagtgcaatctatcact<font color="green"><u>AAGAAATTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCACCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCCAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAATTTCA</u></font>aagctgttatttaagatgttaattatataatatacaaatatcacggttgtgtggtttaacctgttaagacatgcttaga<br>aaagagaacgtgagtatactgactttattacaagcctatattggaagatatatggtaatacataggtatgtataactccctgataacaataggttatgca<br>ttatttaaaaacataatgtcaaacagcattacagttggtaatttatttaaagactacaagcttgcttgtctgttcactactgcatttctatcctgaacat<br>ttctggatatattactatatatcaggtttatatacttttactataggtatataaatatttgctgaatgaataaaataggaagataattttaaaaggtaaa<br>aaatggcatt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	54564067	54564385	1001133	0	+	pAlu14-52554004; RIP_Alu_chr14_053_01	NA	NA	SINE	Alu	Yc2	aatccaaaaatgaaattaaaaaacaattccatttgatagcatcaaaaagaataaaatatttaggaataaatttaacaaaagaagtgtaaaacttatactc<br>taaaatctacaagtcattgttaaaataaagaagatgtaaataaataaaaacacgctatctttatggataagaagacttagtatttttaagatgccaatac<br>tctccaaattaatctgtacattcaacacaatcctcatcagaattccaagtggtttctttgtggaaattgaccagctgatactaaaattcacgtggaattg<br>caagggatccagaatagccaaaacaatcttgaaaaagatgagcaaagttgaaggactcacaattatcaatttcaaaacttacttc<font color="green"><u>AAAACAACAGTAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAACAAACAAACAAAAAAA</font><font color="green"><u>AAAACAACAGTAATC</u></font>aggacagtgtggtattggcataaggacagacatagatcaatggaatagattgagagtcctaagaca<br>aatccatgtgtctatggtcaactaatttttgacaagggcaccaagaccatttcatggagaaagaatagtctttcagcaaatgatgctgggtatcttagta<br>cattttgggctgctataacacaatgccacagatagagtattttataaagaacagaaattcatttctcacagttctggaggctgagaagttcaagatcaag<br>ttgccagcaggtttggttgtctgacaagggtccagtctctgcttctaagatgaagccttgaacaatgtgtcctccaacaaggaagaatgctgtgttctca<br>catagcacaaagtggaagg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	50118888	50119027	1001134	0	+	pAlu14-48108825; RIP_Alu_chr14_049_02	NA	NA	SINE	Alu	Yj	aggatgatcagaacaggccgggctcataatttagtgtgacttgagcacaggcttgaagcggaagagggacttagtcaagcagatacccagaggaagcgca<br>ctgcaggcaaagggaacagatggagcccaggccctcagactggagctcgcctggcatccttgaggaacagaagggaggctagtgtggctggagtaaatgg<br>ggaggagaggaaatcagagaggtaacggagccagataacacagggccttgattaccactgcaaggatacggctgtcactaaatcacgaggggtccctttt<br>tccaatgagggtccctttttccaggatcgggaaggtggatgggatatgccttatgctttacaggatcactttcacactgcgtt<font color="green"><u>AAGAATAGAATACGGAG<br></u></font><font color="red">AGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGAATACGGAG</u></font>gggaaggagtaaaagctggagaccaattaggaggctattgtaa<br>taatccaggccgagaagatggcagagcagggctcctcaacctccaggccatggactggtaccagtccatggtctgttaggaactggaccacacagcagga<br>ggtgagcagcaggctgcaagcaagcaaagcttcatctgtatttacagccactccccatcggttgtattacatcctgacctctgcctcctgtcagatcagc<br>aggggcattagattctcacaggagcacgaatcctgttgtgaactgtacacgtgagtgatctaggctgcacactcgttataagaatctaatgtctgatgat<br>ctgtcactgtctcccatcatccccagatgggaccgtctgg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:POLE2:NM:002692:15/19	
0	chr15	23426847	23427163	1001135	0	+	pAlu15-20845151; RIP_Alu_chr15_020_01	NA	NA	SINE	Alu	Yc1	tttctgttccacgcatgttgcccacattcactgcgtaaaaggcaaagggaactgtgagtacccacaaagaacctgatattgacggcacatacatttcttc<br>attaggaagaataaatttagactgtaacaatttaaaaaaccagaaaatacaactgtacattttagttcttattaaaatccaagaggtttaacttatttgc<br>tccttgtttaggtaattagtgtctaaaacatttcaaagataacatatatagtggctacgatttctagtactttttaaaaattcaagcccagtctcttcta<br>attaaatgtataaatgatttatctctgtctttcttaaaaagaaccaagagccccaattaaaaagtaaaacttaaatttcctcttaaaa<font color="green"><u>AATTGTTACGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTGTTACGTC</u></font>aaaattatctaataaaccatagttcagaaaataatttctgaattaagaaaatatgaagaataaaaccaaca<br>gtttatgtgctgaatttcacatttttattttttattatttttaaaattttgttttaagttctagggtacatgtgcaggagtgttacgtagggaaacgtgt<br>gccatggtggtttggtccacctatcaactcatcacctcagtgttaagcccagcacgcattagctatttttcctgatgctcctcccccacccgccctgaca<br>ggccccagtatgtgttgtttcccttcctgtgtccatgtgttctcactgaacctcacatttttaaatacagcatatgccaggtgtcatttcagtacccata<br>attatacatagtatatg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	24839333	24839640	1001136	0	-	pAlu15-22257287; RIP_Alu_chr15_022_01	NA	NA	SINE	Alu	Yb7	ggccacacagcagttcagttttcttccagacagcccttcccattacaggcccagtggcctaggaagacagaaggacttctggggacaggctggctgggcc<br>actgtcctgtaccacgtcagggtgctaattccagctgcattggctcaaatgcccaaggtgatctggctctgaaaggtataaggcccagaccttagaggtg<br>atcatgtggtgataattatataggcttacagaaatgaagaactgtggagtcttggcagcctccacaaatttcaaaggatttcttcaaaagcctggtagtc<br>tagagacttgtgataagggcagatctactgaagagagccctctatagagggataccaaacacaaatgtggaactggaactgctgca<font color="green"><u>AAGAGTTCACCAGG<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAGTTCACCAGGG</u></font>gcaatgccaagcgaagccgcggaagtgaggtccctgcagagagtcctcatatgagtaatgcctagtgaagcagagga<br>agtggtaccactgccagaaccccagaagtgtcgagtctgcatgcaatgcctgcctgggaaaaacctgaggtagctgactgcaaccagtacagcacccatg<br>gggactctaccaagcaaagtcatagaataacactgcctgatgttttgtgagtccaaccctcaccccagtgtgttcagaagtcagatacagagaataaaat<br>atattccaggtttaacatataatgttgaccctgctggattttgaacttgcttgggacctgttacattttaaattttgtctatttctctcttttggaacat<br>gtacattat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	35009034	35009352	1001137	0	-	pAlu15-32588079; RIP_Alu_chr15_032_03	NA	NA	SINE	Alu	Ya4b	tttcagccttcctcatctcctttctgggcctccttgtctctcattactcacttttcctcccaggtcatgctatccacggccccatttcaaatacccagag<br>ctctcttatggaactggggctgaaagcaagctggagaagtcatgaccagtaagatcttaggggtcagttgtagaggggaggtgccctttgaaaggttata<br>tatgttaaaagagaagcctaaaaaggtggaacttagaggaactatatttttaaggctggaattgcaggtgtcttggcaggatggggatggaggaagaggg<br>atatgattgttttggaaggagaggtatcttctttccagcgccctcaaaaacacactctgtgtgtcatcttctattcttctcctt<font color="green"><u>AGAAAGCCACTGCTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGCCACTGCTTGG</u></font>gtcattcaaatgaaaggcactttgagtgttttaaaaaactaggtttcattttatattgcttgat<br>tctttctcagaacttgtgcctaggcttgaaaacatgtttatcggtaaacattagacatacttttagcaacaagcagtctggtaaacctttccagggtttc<br>tggcagatctgctcagggcagcccatttctgctcttttttttttttttttctttttttaactctttcttaaaacaattgtcctccaggaaacctacctgg<br>tcctgccaatcacattactgcatctcctgggcaatctggatcaaatagttaaacactccacgttaaagggaaaatgcacgcaagtacactcagcacaatg<br>acctgcacatgagaacttct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	46048933	46049229	1001138	0	-	pAlu15-43627967; RIP_Alu_chr15_043_02	NA	NA	SINE	Alu	Ya1	agaatggaaccaagttagaaaacactcttcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaacatagag<br>aacaccacaaagatactcctcgagaagagcaaccccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccaga<br>gagaaaggtcgggttacccacaaagggaagcccagcagactaacagcagatctctcgggagaaaccctacaagccagaagagagtgggggccaatattca<br>acattcttaaagaaaagaatcttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatccttt<font color="green"><u>AAAGACAAACAAAT<br></u></font><font color="red">ACCGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCACAAGGTCAGGAGATCGAGACCATCATGGCTAACA<br>CAGTGAAACCCCATCTCTACTAAAAATATAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGG<br>CGTGAACCCGGGAGGCGTAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTCTAGCCGGGGTGACAGAACAAGACTCTGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>GACAAGCAAAT</u></font>gctgagagatgttgtcaccaccaggcctgccttacaagagctctcaaagaaagcactaaacatggaaaggaacaaccggtaccagccat<br>tgcaaaaacatgccaaattgtaaagaccattgatgctatgaagaaaccacatcaattaataggcaaaataaccagctaacatcataatgacaggatcaaa<br>ttcaaacgtaacaatattaaccttaaatgtaaatgagctaaatgccccaattaagacacggactggcaaactggataaagagttaagatccatcagtgcg<br>ctgtattcaggagacccacctcacatgcagagacacacataggttcaaaacaaagggagggaggaagatctaccaagcaaatggaaagcaaaaaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	54182341	54182644	1001139	0	-	pAlu15-51761375; RIP_Alu_chr15_051_01	NA	NA	SINE	Alu	Ya1	aaaaacccatcaaaaaatcaatgaatccaggagctggtttttttaaaaggtcaaaaaatagataggccactagccagactaacaaagaagaaaagagaga<br>agaatcaaacagacacaataaaaaatgataaaagggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctacgc<br>aaataaactagaaaatctagaagaaatggataaattcctggacacatacactctcccaagtctaaaccaggaagaagtcaaatccctgaatagaccaata<br>acaagttctgaaatcgaggcagtaattagtagtctaccaacccaaaaaagtccaggaccagatggattcacagccaaattctaccagaggtac<font color="green"><u>AAAGAGG<br></u></font><font color="red">AACTGGTAGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCT<br>AACACAGTGAAATCCCACCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGATGGCAGGTGCATGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGA<br>ATGGTGTGAACCCAGAAGGCGGAGCTTGCAGTGAGCCAAGATCATACCACTGCACTCAAGCCTGGGTGACGCAGTGAGAATCCGTCTCAAAAAGAAAAAA<br>AAAA</font><font color="green"><u>AAAGAGG</u></font>cgctggtaccattccttctgaaactattccaaacactagaaaaagagagaatcctccctaactcattttatgaagtcagcatcatcctg<br>ataccaaaacctggcagagacacaacaaaaaaagaaaatttcagatcaatatccctgatgaacatcgatgtaaaaatcctcaataaaatactggcaaatc<br>gaatctatcagcacattaaaaagcttatccaccacgatcaagttggcttcatccctgggacacaaggctggttcaacatatgcaaatcaataaacataca<br>ccatcatataaacagaaccaatgacaaaaaccacgtgattatctcaatagatgcagaaaaggcctttgacaaaattcaacacccttcatgctaaaaactc<br>tcaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	59712899	59713217	1001140	0	-	pAlu15-57291945; RIP_Alu_chr15_057_01	NA	NA	SINE	Alu	Ye5	tgcccattttcctccagaaactaaggtcctccccaggttgtcctgcctttaaagcagagccatcatggacttaaggacctttctgacctacagtgatggg<br>gtccacatctactcccacacaagaatctttgttcaagctgtcagggatctgcctttccactgagctccaattctacctagaacattgcccgtcgaagtgt<br>gatctatgcacaagaacacgagcccctctactgttaggaatgcagagttcaagggtcccaacctgggtctacaggatcagaatctgcattttaacaagac<br>ctcctgctgattcgtatgcacatttaagtctgagaagtactggcctagagaacgtgaccccaccagaacacagtagagcacgttcttc<font color="green"><u>AAGAGCCTTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGCCTTCCT</u></font>tggcttcgtcactggatgagtgatactgggggtaggaaccctgtcattaaaatcattgggattatacaa<br>taaatcttataaagcactgggaagaaatgtgataaaaatgaagaaacgaaaggaaaaattctctctaggctgacatttggtatgcaacaacatgcaactg<br>gtatttggtataaaatgtgtttgtttttccgttagactcagctgtcctaatttgaaagagcctccaaaaatatcagttgctatttagcttcccttagtta<br>agggttgtttaattttgttagacaatgaagctaattctcatcactgcaacaggaagaacaatgacatgaacccacaaaagatgtccccgcctacatatgg<br>ttacagtggcataagctgg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	66633825	66634133	1001141	0	+	pAlu15-64212624; RIP_Alu_chr15_064_01	NA	NA	SINE	Alu	Ya5	taaaatttctaacatgtccttgatatattaatggtagcatataaaatttggcataaaatttaccatttcctagggtctgactattactcagcagctttgc<br>ctgccttctttccaaggccagttgtttatttctctcaattctttgttgttgctcttctgttaggcttctacttaactcagaagcaaacatctcactttca<br>gataagtttgtcagaaagggatctaattcagtagaagtgacatcatgttcattattctccgcaacttcatctgcaatagaaaagaaatagtacatctgtg<br>gtgttagactagttagagaagggcttctcattgaaaaagaatttaaagtggcaaggtgacagacctgaaaaaacaatttgtgaagtat<font color="green"><u>AAGAATGTTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATGTTGTG</u></font>aatacatgcttgattcaattaaataagaaatatttataaatcagtttaaagaggaatgctaagtcaaataaaaatacaa<br>tttaaaatatgcatgaaggccgggcgcggtggctcacgcctgtaatcccaacactttgggaagccgaggcgggtggatcatgaggtcaggagttcaagac<br>cagtctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtggcgcatgcctataatcccagctactcaggaggctga<br>ggcaggagaattgcttgaaccgggacccgggaggcggaggcagcagtgagcaagattgcgccactgcactccagcctgggctacagagcaagactgtctc<br>aaaaaaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	28316135	28316136	1001142	0	+	pAlu15-73350451; RIP_Alu_chr15_025_01	NA	NA	SINE	Alu	Y	gcgcctctgcccggccgcccctactgggaagtgaggagcccctctgcccggccaccaccctgtctgggaggtgtacccaacagctcattgagaatgggcc<br>atgatgacaatggcagttttgtggaatagaaaagggggaaaggtggggaaaagattgagaaatcggatggctgctgtgtctgtgtagaaagaagtagaca<br>tgggagacttttcattttgttctgtactaagaaaaattcttctgccttgggatcctgttgatctatgaccttacccccaatcctgtgctctctgaaacat<br>gtgctgtgtccactcagggttaaatggattaagggcggtgcaagatgtgctttgttaaacagatgcttgaaggcagcatgctcctt<font color="green"><u>AAGAGTCATCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATGACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAGATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTCATCACCA</u></font>atccctaatctcaagtaatcagggacacaaacactgcggaaggccgcagggtcctctgcctaggaaaaccagagaccttt<br>gttcacttgtttatctgctgaccttccctccactattgtcccatgaccctgccaaatccccctctgtgagaaacacccaagaattatcaataaaaaaata<br>aattaaaaaaaaaaaaagaaaaacacctaggaatacagctaaccaaggagttgaaagatttctataagcactacaaaacattgctgaaagaaatcagagg<br>tgacgcaaataaatagaaaaacatttcatgctcatggactggaataatcaatatcataaaaatgtccatactgcccaaagcaatgtacagattcaatgct<br>attcct	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:OCA2:NM:000275:2/24	
0	chr15	77910873	77911236	1001143	0	-	pAlu15-75486694; RIP_Alu_chr15_075_01	NA	NA	SINE	Alu	Ya5	ctcactcatgcgcatgtttcctttcaaagaacattcacgggggtctgttctgtgtcacacttcactctgagctacagacatactctctgcccctgggtac<br>ctcactctctagcaggtgagacacacacacccatgactgaaccaggattacattacaggagagatgccaaatgctgaggctttggagcatatttccctct<br>ttgctcaaggtcactaggaagctctcacctttcgtcattaggcaggacttggtggcattctttcctgactggcttcccttttttagcttttatcttctta<br>tcatcttgtagcataatttttctgtcagttggttcaaatcactatgggaatgaggtgtgctatataccagtttcataaaatcactactat<font color="green"><u>AAGAATAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAACAG</u></font>gtgttggggacaagaggtgatatct<br>gactgagtaggtcaaggatggcctcctggaggaggtggcctttggggtggaaggttgcaaaggctgctggggcaggagtctgggacagttctccagaaca<br>agatggcttagaggtaggagtgtgcaggacaaagtggggaggcccaggtggctttgctcagggactggtgggaaaagaggtgggtgggcaggttgaggcc<br>cggtggtgcaagcttcctgtgtgccagattcgtgtctgtataagaggggcttaccagcacctcggggtggcccgtgtcctcactagcccccctcattccc<br>cagccttctctccagcagctccccccacccgccagcctggccctgagctggatgctaaaagtcct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LINGO1:NM:032808:1/2	
0	chr15	91402113	91402416	1001144	0	+	pAlu15-88989245; RIP_Alu_chr15_089_01	NA	NA	SINE	Alu	Yc1	gagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcttggtggcacttgcctgtaatcccagctact<br>caggaggctgaggcaggagaatcgcttgaacccatgaggcagagctgcagtgggctgagatcgtgccactgcactccagcctgggtgacagagtaagact<br>ctgtctcaaaaaaaccaaaaaacaaattatccaggcttggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggaggatcgcttgaacct<br>gggaggtggaggttgcagtcagctgagatcgtgccactgcactccagcctgggcaacagagtgagactccaaaaaaagaaagat<font color="green"><u>AGAAATGTCTTTCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAATGTCTTTCATA</u></font>atgtaagaaactagattttttttttttgtaatagggaagggttgaattctagtagaagctgaaacccagataaaaagatt<br>gcgaatacccaaatccaatcatagggagccaagtgaaggccatcctgggagccgcatgatggcagcacacagctggagctctaacagttcctggcaccta<br>gagccaaacggacaggggaactgggttttcacaatcaattgtattgatctaggaaaactgaaaccaaattactatgtggggcaagaggcttaccggaaag<br>tgctgggctatctggtcctggtggggaggaggaagggtgcttgtgttctcaggcctggatctgaggaagtgggtgcagagatgcaatggcaccatccctg<br>gctg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	102332543	102332845	1001145	0	+	pAlu15-99925171; RIP_Alu_chr15_100_01	NA	NA	SINE	Alu	Ya4	acactgaagcttcctaacaaacagaaagaaatcttacactcttgcttgttagtatttaatacatgcattatgtgctttttaattttttggtcctactaag<br>gagtagctgatagcgctgttttgaaggcatatctactgtgcctctgactagcaataggaaaccggttaagttattcaacctctctacatttcagtttcag<br>gaaatgaagtggacaaagaagatcatcattaggcaatatgtacctccaatattctgtattatgtggagatatcaagtccgtatgtgattacacaaatcat<br>agtccaaaagagttcagaatgagacatatagaattgaaagtcctatttatacagatactggttaaagcccagggattagatgggttt<font color="green"><u>AAAATGCTTTACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAATGCTTTACC</u></font>tctatatagaaaggagtacaggaccaggaaagggcccaggggcataccatgattgagccgaggagacagtaagagagtttcagt<br>gacaaaggagatgcaaggagacgatggggtttctgaaaccaggagaagaaagccttcatcatagaagcaagtgataaacttcactgaacacttctaagac<br>atttcggacaagaatagaagagcgacctttggatttcactgcacgtagcttaacaaacgttcataaaggcagtgaaaacggaagctcggttagggtggtc<br>ttaggagagaatccaggtgatgacgtagagaatgcgactatagatggctctctctagaagttttacttttaagggtagcagagaactagagtagagctgc<br>aga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	82948694	82948979	1001146	0	-	pAlu15-80763068;pAlu15-80533022; RIP_Alu_chr15_080_01	NA	NA	SINE	Alu	Sg	tgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccatgcccagctaatttttctgtttttagtagaaacggg<br>gtttcaccatgttggccaggctggtcttgaactcctgaactcaagtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgc<br>accaggccatgaaacactttcttccacccacggctttctcttctctccccatttacagcaataagacagcctaacctgggaaagagagagagagggaagc<br>tacttccaaatggatgcctgtccccatcagtaataaccaagtctattcaagtgctagatgttaactttaaaagaaggaaacatcaa<font color="green"><u>AAGTCCAAGTTTCA<br></u></font><font color="red">GCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGTCAATATGGT<br>GAAACCCCGTCTCTACTAAAAATAAAAAATTAGTCAGGCATGGTGGCGTGTGCCTGTAGTCCCAGCTACTCGGGAGAGGCAGAAGATTCGCTTCAACCGG<br>GGAAGCAGAGGTTGCAGTGAGCCAAGATCGTGCTACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAGTCCAAGT</u></font>tcgc<br>ctagctttgtcaggaatgtttttaccctcagtctgtaagtgtgaccaaatatattttttaaaggtttaccctcaatctgttaagttcaaaggtttactat<br>aatctcttcataagaaaactattggaaagatggaataaaatacacagaaatgtccttaacaggtaaatatttatttttctttcttattattatactttaa<br>gttctggggtatatgtgcagaacgtgcaggtttgttgcataggtacacacgtgccatggtggtttgctgcacccatcaactcgtcatctacactaggtat<br>ttctcctaatgctatccctcccctagccccccaacccccaacaggccccagtgtgtgatgttcccccctccctgtgtccgtg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC80154:NR:026811:1/8	
0	chr15	90959816	90960109	1001147	0	-	pAlu15-88546943; RIP_Alu_chr15_088_01	NA	NA	SINE	Alu	Yb3a1	aggacttcatgtctgaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaacgaaagagcttctgcacagcaaaagaaac<br>taccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatatacttatctgacaaagggctaatatccagaatctacaaagaactcaaa<br>caaatttaaaagaaacaaacaaccccatcacaaagtaggggaaggatatgaacagacactttgcaaaagaagacatttatgcagccaacagacacatgaa<br>aaaatggtcatcactggccatcagagaaatgcaaatcaaaaccacaacgagataccatctcacaccagttagaatagtgatcatt<font color="green"><u>AAAAAGTTAAGAAAC<br></u></font><font color="red">AGGCTGGGCACAGCGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GAGAACTCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACACGGGAGGTGAAGCCTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAAG<br>TCAGGAAACA</u></font>aacaggtgctggagaggatgtggagaaataggaacacttttacactgctggagggactgtaaactgcttcaaccattggggaagacagtg<br>tggcagttcctcaaggatctagaactagaaataccatttgacccagccatcccattactgggtatgtacccaaaggattataaatcatgctgctataaag<br>acacatgcgcacgtatgtttactgcagcaccattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagaatggattaagaaaatgtg<br>gcacatatacaccatggaatactatgaagccataaaaaaggatgagttcatgtcctttgtagggacatgggaacatcacacactggggcctgttg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:IQGAP1:NM:003870:2/38	
0	chr16	12002337	12002647	1001148	0	+	pAlu16-11968670; RIP_Alu_chr16_011_01	NA	NA	SINE	Alu	Ya5	aaaaatacaaaaattagctggggatggtggtgcacacgtgtaatcccagctacctgggaggctgaggcaggagaatcgcttgaaccaggaaggcagaggt<br>tgcagtgagccaagatcgtgccagtgcactccagcctgggcgacatagagagattcatctcaaaaacaaaaaagaaacaaaaaaccatttaaataacatt<br>taaaatacacaaaccaaaaccatttcagataccctcaaaaaagtacaaaaataacagaaacagccgggtgcggtggctcacacctgtaatcccagcactt<br>tgggaggccgaggtgggtggctcacttgaggtcagtagccaccaagaccatcctggccaacatggtgaaaccctgtctctactaaa<font color="green"><u>AATACAAAAATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCGGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AATACAAAAATTAG</u></font>ccaggcatggcggtgcgcacctgtcatcccagctactcaggagactgaggcaggagaatcgcttgaacccgggag<br>gtggaggttgcagtgagccgagatcacgccattgcactgcagccggggcaacaaagggagactccatgtcaaaaataaaaaaataaccgaaacatttttc<br>tgctaccaaaattaaccacctaaaggcaatggacaagtagtatggtaacatactggagttctacagaaatattcaaccaggaaattacccagtgacattc<br>tgcagaatgcgctttttttttttcaagtgaagcgacatacaattacctagtgggaatgtggtttggaagtgagtgtcaccactgttaggtcaggtgctcg<br>ggaaagcctta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GSPT1:NM:002094:1/15	
0	chr16	31985265	31985589	1001149	0	+	pAlu16-31982109; RIP_Alu_chr16_031_02	NA	NA	SINE	Alu	Yb7	gatcaggactgaacacacaggaatcaccatggagtttgtgctgagctgggttttccttgctgctattttaaaagttgatttatggagagctagagagatt<br>gagtgtgagtggacatgagtgagagaaacagtggatatgtgtggcagtttctgaccttagtgtctctgtgtttgcaggtgtccagtgtgaggtgcagctg<br>gtggagtctgcgggaggccttggtacagcctcggggggtcccttagactctcctgtgcagcctctgaattcactttcagtaacgcctggatgagctgggt<br>ccgccaggctccagggaaggggctggagtgggttggccgtattaaaagcaaagctaatggtgggacaacagactacgctgcacctgtgaaa<font color="green"><u>GGCAGATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGGAGATTC</u></font>accatctcaagagatgattcaaaaaacacgctgtatctgcaaatgaacagcctgaaaaccgaggacacggc<br>cgtgtattactgtaccacagacacagtgaggggaggtcagtgtgagcccagacacaaacctccctgcaggggcgcgcggggcaaccagggggcgctcggg<br>acccactgaggacgggacaggtcccaggagcaggtgccgggagaggtttcctttctcctcagctggaaaagtcacgtttatcttcgcaggactctggagt<br>cttctaggctgtgatattttgttacttatatttattatgaactttatcattaatatttaaattttagtaattattaacattctacatattattatatttt<br>taagtatatactttcaagaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	32801325	32801632	1001150	0	-	pAlu16-32798404; RIP_Alu_chr16_032_02	NA	NA	SINE	Alu	Yc2	aagccactgacttgtagacattaatgagtgcactctacactatgtaaattatatctcaataaatcctttcaaaaatacacagaagagtaaggggttttgg<br>aatgctgcagctgggaggcagtttgaaatactgaataggcctcatcgagaatgtgaagtttcagtaaagacttgaggaagttgaatgagctgatcaatgg<br>atatatggagggctatctttccaagccaagaaattaactagagtcttgaccataaggcagcagcatgttggcatgtccagaggacagtgaggtggccagg<br>accactggtaagatcaagggtgaagatataaaagaattttggcagttaacatgtggcagatgatgatgggcttgcagatcattgt<font color="green"><u>AAGAAATGTTGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTTTCAAAAAAAAAAAAAACAAAA<br>CAAAAAAA</font><font color="green"><u>AAGAAATGTTGTTTT</u></font>tagtgtacatgaaatggggagacaaatcattatcccattatcaatattttaataaattggatccatgaaccaaatcc<br>aatgagatcaaatcaattaataataatatgcaaatttgtattaaaattaaaagaattacttgcacatttgagaacaggagagacatgatttttatcagca<br>ataataaacattattaattttaattgtgatcagctaattgagattaattgcaatacatcatgctttataatgtgactgccaaaaggaaaatatgattgta<br>atcttatactacatctatcaatgtcttttatacataagagtatagagtaagcccgtagttttcaaagccaacctatgaagcagtgacatcttatgcaagt<br>ttgctgct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	33335547	33335548	1001151	0	+	pAlu16-33330708;pAlu16-32335202; RIP_Alu_chr16_033_01	NA	NA	SINE	Alu	Ya5	tcgctggcttttgaatgccaacaatcatattctttataaggcacagggaagatttttctaaagaacaagtatgtgaacctgaaaagtaatcaccacttgg<br>tagtgacaatatggatagggtgaagggcgtcaccaagaagcaatgaaaagatacatttgcagttaaatttgaaaaccatgatgtttaatacatatagtaa<br>taaagaatactttctcctgtttcaaaattattttagaatttaagatagaagctaaaatacctagggataatgatatgactattgaaaattaaaaattaaa<br>ggacattttgagtattagaagttaagaatgagaacttattacccaatgaacaggggataattcattatgctccatatccattgaatt<font color="green"><u>AAAAGACAGGCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGACAGGCCC</u></font>attacctggataatttgaaagtttaattttatttaaaagtcttgtttcattcatcaagctaaaggattagctcccagaaatattctag<br>gattgcatatccccaactctgtaggaagtatagaaagaatgttataagggccaccacctaaacattattatgtaaataatttagtaccattccatttgcc<br>tttgtagatttaaaaatgtaaatggctttctcatattaggaaacatcatttttcaaaacccagataaacatagtatattgcaagagaataattattttct<br>ttattaaaaaagaaatactggatgctaagtccaaaagacataaattattttatactaataactaccaacattttattcattaaaatataaaggtcaaag	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	46527005	46527006	1001152	0	+	pAlu16-56162982; RIP_Alu_chr16_045_01	NA	NA	SINE	Alu	Yb7	aaaccgctcaactacatggaaactgaacaacctgctcctgaatgactactgggtacataacaaaatgaaggcagaaataaagatgttctttgaaaccaac<br>gagaacaaagacccaacataccagaatctctgggacacatttaaggcagtgtgtagagggaaatttatagcactaaatgctcacaagagaaagcaggaaa<br>aatctaaaactgacaccctgacatcagaattaaaagaactagagaagcaagagcaaacacattcaaaagctaacagaaggcaagaaataactaagatcag<br>agcagaactgaaggagatagagacacaaaaaacccttcaaaaaaatcagtgaagccaggagctggttttttcaaaagatcaacaa<font color="green"><u>AATTGATAGACTGCT<br></u></font><font color="red">GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AATTGATAGACTGCT</u></font>agcaagactaataaagaagaaaagagagaagaatcaaacagatgcagtaaaaaatgataaaggggatatcaccaccgatccc<br>acagaaatacaaactaccatcagagaatattataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatacaccc<br>tcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaagtcc<br>aagaccagacggattcacagccgaattctaccagaggtacaaggaggagctggtaccattccttctgaaactattccaatcaatagaaaaagagggaatc<br>ctc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ANKRD26P1:NR:026556:12/17	
0	chr16	81845654	81845958	1001153	0	-	pAlu16-81584455; RIP_Alu_chr16_080_02	NA	NA	SINE	Alu	Yb3a2	ggcatgggcaaagacttcatgactaaaacaccaaaagcaatggcaaaattaacaaatgggatctaattcagctaaagagcttctgcacagcaaaagaaac<br>tatcatcagagtgagcaggcaacatacagaatggaagaaaaattttgcaatctatccatctgacaaatggctaatatccagaatctacaaagaacttaaa<br>caaatttacaagaaaaaacaaccccatcaaaaagtggacaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaagaaacgtaggaaa<br>aaagctcatcatcactggtcattagagaaatgcaaatcaaaactacaatgagataccatctcatgccagttagaatgacgatcatt<font color="green"><u>AAAAAGTCAGTAAA<br></u></font><font color="red">TAAACAACAGGCCGGGTGCGGTGGCTCACGCCTGTAATCTCAGCACTGTGGGAGGCTGAGGCGTGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGG<br>CTAACACGGTGAAACTTCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCAGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGA<br>GAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATAGCGCCACTGCAGTCCAGCCTGGGCAAAAGAGCAAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAGTCAG</u></font>caacagatgctggagaggatgtagagaaataggaatgcttttacactgttggtaggagtgtaaatcagttcaaccattgtg<br>gaagacagcgttgcaattcctcgaggatctagcaccagaaataccatttgatccagcaatcctattactgggtataaaccgaaaggattgtaaatcattc<br>tactataaagacacatgcacacatatgtttattgcggcactattcacaagagcaaagacatggaaccaatccaaatgcccatcgatgatagactggataa<br>agaaaatgtggcacatatacaccatggaatactatgcaaccataaaaaaggatgagctcatgtcctttgcagggacatggatgaagctggaaaccatcat<br>tctca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PLCG2:NM:002661:2/33	
0	chr16	34336429	34336730	1001154	0	+	pAlu16-35376640; RIP_Alu_chr16_034_01	NA	NA	SINE	Alu	Yc2	agcaggtggctacagtgatacaggtttgtgtagcatttctcctaagttctcaaaactttgaaacttctctgccttctttttacaattgtttaaaataaat<br>tgtgtggttttctaaacattccagtctagacaagacatgccttcagaggatgttttatctttacaagtctctctcgttaatcttgacatgaaatgttacc<br>ctgatcgtgtggactatattgataaagttctagaaacagcagcggagatattcaataagctcaaccttgaacagtaagttacattttttgtaaaaatctt<br>cataaagacatttttgtcttagatttgcttttctttctcaattgttttttgaactgctggcatttgtcttgttttaatcatgcattaaga<font color="green"><u>TTGTCATGCT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCAGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGT<br>GAAACCCCGTCTTTACTAAAAATACAAAAAAATTAGCCGGGCGTGGGCGCGGGCGCCTGTAGTCCCGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGTGATAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>GG</font><font color="green"><u>TTGCCATGCT</u></font>tagcactactaggggcagaaagtggtgaccaattacttgtttttttatattaatgaaattgtggtacctatggaccataggcagtctt<br>cagggaccagtgcctccaatttggatccctctctgtgtgtcaggggcgtccaatcttttggcttccctgggctgcactgaaagaagcattttcttgggcc<br>gcacataaaatacactaacactaacaatagctgatgagcttaaaaaaatcgcaaaagctcataatgttttaagaaaattacaaatttgtgttgggccgca<br>ttcaaagctatcctgggctgcatgcggcctgtgggctgcggtttggacaagcttgctataagtgaatgagtttgttcttaaactggtaaggaaactttgt<br>ca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	30211658	30211978	1001155	0	+	pAlu16-29470755; RIP_Alu_chr16_030_01	NA	NA	SINE	Alu	Sx	gtttccacatgtgaggggcatgaggggggctcaaggaggggagcatcggggagaggagcgcactgggtggaggctgggggtcccagcaggaaatggtgag<br>acaaagggcgctggctggcagggagacagcacaggcaggccctagagcttcctcagcacagctggactctcctggagaccttcacacaccctgatatctg<br>ggccccgcgctacgagggtgctttcactggtctgcactatgccccaggccctgggattttgaacagctctgcaggtgactgaaaggtgcggccaggctgg<br>ggaacgacctggtttcagccccagccccgccactgactgactttgtgagtgcgggcaagtcactcagcctccctaggcctcagtgacttccctgaaagc<font color="green"><u>A<br></u></font><font color="red">AAAACTCTGCAAAGGGGCAGCTGGGTGCTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTAGACAAATCACTTGAGGCCAGGAGTTCTAGA<br>CCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAGAAAAAAAAAAATTAGCTGAGCATGGTTGTACATGCTTGTAATCCCAGCTACTTGGGATGC<br>CGAGGCGGGAGGATTGCTTGAACCCAAGAGGTGGAGTTTGCAGTGAGCTGAGATTGTGCCACACTGCACTCCAGCTTGGGTGAGAGTGAGACTCCATCTC<br>AAAAAAAAAAAAAAAAAGAG</font><font color="green"><u>AG</u></font>gaatcccactttcttgctgttgtgatggtggtaagggaacgggcctggctctggcccctgatgcaggaacatggagct<br>gatccaggacacctcccgcccgccactggagtacgtgaagggggtcccgctcatcaagtactttgcagaggcactggggcccctgcagagcttccaagcc<br>cgacctgatgacctgctcatcaacacctaccccaagtctggtaagtgaggagggccacccaccctctcccaggcggcagtccccaccttggtcagcaagg<br>tcgtgccctcagcctgctcacctcctatctccctccctctccaggcaccacctgggtgagccagatactggacatgatctaccagggcggcgacctagag<br>aagtgtaaccgggctcccatc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SULT1A4:NM:001017390:1/8	
0	chr17	5464752	5465062	1001156	0	-	pAlu17-5409430; RIP_Alu_chr17_005_01	NA	NA	SINE	Alu	Yb7	caggtgtggcccatctggctaccacaggcagaggtggttggagtcacccaccctgccatctgggtgtttccctgggcagtaacaggaggctgcacccctc<br>agccggattcagacagaattaggaccactgcgctggaagctctagcagacatggcctgcatggctaggagaggcggtggtgggtggagtcacccaccctg<br>ccttcagagtgtttctcggggaaccgggagtttgcctctgctggctgagttcagacagaagcagactgctagcagacattgcccgcctggctaccagtgg<br>cagggatgggcagagtcaccccctctgctgtccaagtggggaacctgaacaaaataatatcccaaagaacagtttcatggcaagtat<font color="green"><u>AAAAACCACATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAACCACATGG</u></font>catgctttttgatctatcaagagcaaaggtaggaaaacttgtttgagtaaaagacaagatagtaggctgggtgcag<br>tggcccatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgtgaggtcaggagtttgagaccagcatggccaacatggtgaaacccca<br>tctctacaaaaatacaaaaattagctggcgtgatggcgggtacttataatcccagctactctgggggctgaggcaggagaatcgcttgaccctgggaggc<br>ggaggttgcggtgagccgagatcgtgccactgcactccagcctgggtgacaagagagaaactctgcctcaaaaaaataaataaaataaaatgaaattcac<br>ctaaggagaga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NLRP1:NM:014922:3/16	
0	chr17	6874737	6875034	1001157	0	+	pAlu17-6819420; RIP_Alu_chr17_006_02	NA	NA	SINE	Alu	Ye5	aaaacaatgggagagacagacaacattataccttcaggaagaaataatttgagtgacagcagatttctcatcagcaatcacagaggccacaaggaagtag<br>aacagccttttttaaatacagtcacacatcacttaaccacagggatacattctgagatgtacatcactctgagaaatgcatcactagccaatttcagtgt<br>tgtgcatacatcatggagtgcacttaaacctagacggtataacccactacacacctagactatatagtatagtccattgctcaaacaacctgcacaacac<br>gttactatactgaatattgtaggcaactgcaacacaattgtaagtatttgtgtatctcaacacagaaaatgtacagtaaaagtatggtattaaaga<font color="green"><u>TTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTCGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGAGCCTGCAGTGAGCCGGGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGG</font><font color="green"><u>TT<br>CA</u></font>aaatggcatacctgtacagggcactgaccatgaatggaacttgcagaactggaagttgctgcagatgggtcagtgagtgagtggtgagggaacgtgaa<br>gacccagggcattgctggacactcctgtagactttataaacattgtacatctcccctacactaaatttatctttaaaaacttcttttggccaggcacggt<br>ggctcacaccgtaatcccagcactttgggagcccaaggcgggcagatcatgaggtcaggagctcgagaccaacctgactaacatgctgaaaccccgtctc<br>tactaaaaatacaaaatgtagccaggcgtggtggtgcccgcctgtaatcccagctactcagaggctgaggcaggagaatcacttgaacccgggaggcg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	15863587	15863891	1001158	0	+	pAlu17-15806542; RIP_Alu_chr17_015_02	NA	NA	SINE	Alu	Yc1	gttgttcttttttaaaaaatccaggttctattaaaaggtcatgcttgcatttaatatgttcctttaatctgaaagagttcctcagtcttttgtttgtttt<br>agtctttcaagacattaacattttcctccgggcacggtggctcacacctgtaatgggagcctgagcaggaggatcatttgaggccagaagttcaagacca<br>gcctgggcaacacagcgaggccccatctctatgaaaattaagaaaattagtcaaatgtggtggcgcatgcctatagtcctagctattcaggaggctgagg<br>tgggaggattgcttgagcccaggagttcaaggttacagtgagctattagattggtgcaaaagtaattgtggttttggccattaaaaa<font color="green"><u>AAGGCACAAATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGGCACAAATTGG</u></font>gccgggcgcggtggctcatgcctgtaatctcagcactttgggaggcgaaggcaggcagatcatgaggtcaggagatcgaga<br>ccatcctggctaacacggtgaaaccccgtctctactaaaaacacacacaaaaaaattagccgggcatggtggtgggtgcctgtagtcccagctactcggg<br>aggctgaggcaggagaatggcgtgagtccaggagacagaggttgcagtgagccgagatcatgccactgcactccagcctgggcgacagagcaagactccg<br>tctcaaaaaaaaaagtctgggcgcagtagctcacgactataatcccagcactttgggaggccgaggcgggcgattcacgagttcaggagattgagaccat<br>cctggc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ADORA2B:NM:000676:1/2	
0	chr17	36396692	36397008	1001159	0	+	pAlu17-36307221; RIP_Alu_chr17_033_01	NA	NA	SINE	Alu	Y	ggtcggatcccttgagcccaggagttcaagaccagcctgggcaatataggaagaccccccccatatctataaaaaaatacaaatacgaatattagccagg<br>catggtggtacacgcctgtaatatcagctacttgggagggtgaggtgggaggatggcttgagaccaggagacagaggttgtggtagttgagatcatgcca<br>ctgccccccagcctgggtgacagagcgagactctctcaaaaaaaaaaaaagtaaaaagcaatccagctccaatactgatgtacttgtaagagtttatgcc<br>aaacttggtatctatttaaaaatcagctcatacgggaataagatttccagtcaaaatggactactttcatactaaaattataaggtc<font color="green"><u>TAAAACAGTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCGGGAGCCTGTAGTCCCAGCTACTCCGGAGGGTGACGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGGCTGGGGGACAGAGCGAGACCCCGTCTCAAAAAAAAATAAAAAATA<br>AAATAAAATAAAATAAAA</font><font color="green"><u>TAAAACAGTTCTC</u></font>attttatagacactaatcgagttccacattctataccatgtttctttttagcatgttcttcccctgtaa<br>ctaactccattatttagcttctaatcttcatattgtctcataaagcaaatgtttttctctgaattaggagtatgacttatctcaattttaaactatagta<br>caaaaagaaaaaaaaactttaagaaaaacataaaaacgaagcctctttgaggagcctttcatgttcaaagtacttaatttttcaaataactcatcagctt<br>tattatgcgtattatattcattttatacttatgaaaatatgatttccctagtaccacaaaataagttaatcttggaagtggaattttaattgtgacattt<br>gcccgggtgtggtggctc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	45535379	45535673	1001160	0	+	pAlu17-45877357; RIP_Alu_chr17_042_01	NA	NA	SINE	Alu	Y	cgtgatcttggctcactgcaaactccgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagcagggattacaggcatgcgccaccacacc<br>cggctaattttgtatttttagtaggggtggggtttctccacgttggtcaggctggtctcgaactcctgacctcaggtgatccgcccacctcagcctcgca<br>aagtgctgggattacaggcgtgagccaccgcgcccggcctgaagggtacttttgacaaactcagaggccccacagtacagggatgtacattcacaaacaa<br>ccaagagaaaaagagaacaagtaaacccctctcctcctttcagatgcaacactgaatggcaaaccaggggtgagaatacactaa<font color="green"><u>AAGTACATAGACCCTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCTGACTCTACTAAGAACACCAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTA<br>CATAGACCCTC</u></font>aaagagaggacaccagggctctgaccatctcaaactctgaaatttgatgaaggtaatccgaaattacaacccccaaggcacgaagcaga<br>tgcaaatatacatcctctctaaaagaaaatagtatcattttggctacaaattatttctacctttttttttttttttttttttttgagacaaagccttggt<br>ctatggcccaggctggactgcactggcgtgatctcggctcactgcaacttcctccttccagttcaagcaattctcctgcctcagcctcccaagtagctgg<br>gattacaggtgcccaccaccacacctggctaatttttgtatttttagtagatatgaggtttcactgtgtagaccaggctggtctcgaactcctga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	47228454	47228772	1001161	0	+	pAlu17-47570433; RIP_Alu_chr17_044_01	NA	NA	SINE	Alu	Ya5	gatgtgctttgttaaacagatgcttgacggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaagg<br>ccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatccgctgaccttccctccactattgtcctgtgaacctgccaaatccccct<br>ctgcgagaaacacccaagaatgatcaattaaaaaaataataataaaaaataaaaattttgcctttttcatattaccgtaagtattcactatgatgatcta<br>atcttttttttcaaggtaattaaatgatctcctgcttaaactgggtcccgaaggctaacatttcaaccattgtaccgtagttcctcaaa<font color="green"><u>AAGCTAATCTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGCTAATCTT</u></font>gctggatggtgctatgtgcttgcttttgactaaagattgttattggccgggtgtggtggctaacatttgt<br>aatcccagcactttgggaggccaaggcatgcggatcataagatcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctactaaaaatac<br>aaaaattagccgggcatggtggtgtgtgcttgtagtcccagctactaaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtga<br>gctgagatcgcaccactgaactccagcctggcaacctagcgagactctgtcacaaaaaaaaaaaaaaaatcgttatcaacaaccaaaaaaaccataaaaa<br>tagttactctgtttcctct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:B4GALNT2:NM:001159387:3/11	
0	chr17	65520866	65521184	1001162	0	-	pAlu17-65938308; RIP_Alu_chr17_062_02	NA	NA	SINE	Alu	Yb7	aatggttggcaaagcatgcaggctgatgcctgctttgtaaataaagttttattggaacacagcgatgctcattcattctatggctgctttcatttacaat<br>ggcagagttgaatactttgagagactgtgtaacccccaaggctgaaaatatttattatctggccctttatagaaataagtttgcagaccgttgttctatt<br>ccacggctgggtccagtctgggccaccctcagctgttcatctagatctgttctgcccaggaccaaagctatttgctatgtgtggccactgagcctttgaa<br>gtgtggcccatggaatagagggattgaattttaaattttctttcattttaattcatttaaatttaagactggtgcttgattcagttatt<font color="green"><u>AGAAAACCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACCTTC</u></font>atatatgtttgaaacactttgggtatgtgaatctactttttcaactgggaattttatgaaatctaaataa<br>agatcaagtactgccaatgaaaatttagcgtctgacttgggagtgctgtttaagtctaaaatgcacactagatttggaagacttactacaaaaaaaagca<br>aaatagttcattaataatttttatgttgattgaaatgatatttttgtatactgggttaactaaaatatatttttaaaattaacttcacttgccttttttt<br>ttccttttctttcttatttttttagagacagggtctcgctctgtcatccaggctggagtgcagaggtatgaccgtagctcattgcagccttgacccccag<br>tgctcaagcgatccttcca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PITPNC1:NM:012417:1/9	
0	chr17	66004366	66004671	1001163	0	+	pAlu17-66421768; RIP_Alu_chr17_063_01	NA	NA	SINE	Alu	Y	agctcactgcatcctccacctcccagtttcaagtgattctcctgcctcagcctcctgagtaactgggattataagcgcatgccaccacacctggctaatt<br>ttttgtatttttagtaaagacagggttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatccaccggcctcgggctcctaaagtgct<br>gggattacaggcgtgatccaccatacctggcctagtattaaatctttataacaacataattacaagcttgagacttctattaccctgttttacagatgag<br>taactggggcacagtaaggttgagtaatttggccaaggttatacagctagtaattacatgataccaaaactgatagcttctgccagtgctctt<font color="green"><u>AATATAA<br></u></font><font color="red">GGTTGAAAGAGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTG<br>GCTAACACGATGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGG<br>AGAATGACGTGAACCCGGGAGGCAGGGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCTTGTCTCAGAAAAAA<br>AAAAAA</font><font color="green"><u>AATAATAA</u></font>ataataataataagaaggttgaaggaaaaaagaaaagagccaattaacataaaacatagctgttagaagcctccttctacaaatgg<br>ccatgaagtctaagtcgataattatatctgctttcttttttttttttttccttttttgagacagagtcttgctctgtcgctcaggctggggtgcagtggc<br>gtgatctcggctcactgcaacctccacctcccaggtttgagcgattctgctgcctcagcctccagagtaactgggactataagcatgcaccaccatgcct<br>ggctaatttttgtatttttagtagagacagggtttcaccatgttagtcaggctggtctcgaactcctaacctcaggtgatccactcgcctcaccctccca<br>aagtgct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	1230438	1230439	1001164	0	-	pAlu17-1180422; RIP_Alu_chr17_001_01	NA	NA	SINE	Alu	Y	cactgtgtgtcaaccatgcagcctttctggagaggaactgggcagaataagctggacatgggcgtgtctttgggcggtgccttcacttctagggatgcag<br>gttaagctggacatgggcgtgtctttgggcggtggcttcacttctagggatgcaggtattcgctggacagatgtttgttaagctccctggtgccaggccc<br>agggagttggtcgtgggtgagaccccagagaccccagagcacattcagcagggacaaggcaattgtcatgcaattatctatgcaggaacagggtgagaag<br>c<font color="green"><u>ACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCCAGAAAGAAAAAACAAAAACAGCCACTAATGTCATTCATGAAGGCTCTGCCTGCC<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCTGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGATGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGA<br>CGGAGCTTGCAGTGAGCAGAGATCGTACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCCAGAAAGAAAAAACAAAAA</font><font color="green"><u>CAGCCACTAAT<br>GTCATTCATGAAGGCTCTGCCTGCC</u></font>catatgaatttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggtacgatctctgc<br>tcactgcaagctccgtctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccatcacgacgcccggctaattttt<br>tgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccgccctcctcggcctcccaaagtgctgggat<br>tacaggcgtgagccaccgcgcccagc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	10203435	10203771	1001165	0	+	pAlu17-10146390; RIP_Alu_chr17_010_01	NA	NA	SINE	Alu	Yb7	ttatttcacttagcataatgtcccccaagttcacctatgttgtcacaaattgcaggatttccttcttttttatggcccaatagtattcccaatagtatat<br>gaatatatatattcaaatttgcatatatatgtacatttgcatatatatgcacattgtggtgatatatacatatatacgagatatatacatatatatacgt<br>atatatggatatatacgtgtatatatatacatatatacgagatatatacgtgtatatatatatacatatatatgtatatacacattttctttatccattt<br>atccattgatggacatttagtttgtttccacattgtggctattgtgaagagtgatgcaataaacatggaagtgtagatatctcttc<font color="green"><u>AAGATCCTGATTCA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTCCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATCCTGATTCA</u></font>atttcctttggatatatgcccagtagtgggatggctggatcatatggta<br>gttccatttttaagtttttgaaaaactgctattaggttgtaccaatttgcattcccaccagcagtgcacaagagttcccttttctccacgtcctcaccaa<br>cacttttgtctttctgataatagctattctgagagatgtagagtgatatagggtctttatttttaaatgtttgtggaagctagtgatttacctggccatg<br>ggttggatttccatgttttctacttggagcaaagatcctccactttcacattccttattttatatttacgatagagcagcaagaatctaaatatcagctt<br>catagaagaggaatggaccatgataataaacacagca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	downstream:MYH13:NM:003802	
0	chr17	18959889	18960184	1001166	0	-	pAlu17-18902845; RIP_Alu_chr17_018_01	NA	NA	SINE	Alu	Ya1	agaaaccccatctctactaaaaatacaaaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttga<br>acccgggaggtggaggttgcggtgagctgagatcatgccattacactccagcctgagcaagaagagtgaaactccgtctcaaaaaataaaaatatatatt<br>tgtggttaggcatggtgactcaggcttacacctgtaatcctagaactttgggaggccgaggtaggaggattgcttgaggccaggagttcaagactagcct<br>gggcaacatagcaagatcccatctctacagaaaagtaaatttttaaaaattatgacattttgagctgcatgatgaaaaaaattt<font color="green"><u>AAAAAGAAAGAAAGAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGTGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACGCG<br>GTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCATGCTGGTGGGTGCCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCATTCTCCATTCTCGGAGCTTGCAGTGAGCCGAGATTGTGCCATTGTACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCACAAAAAAAAA</font><font color="green"><u>AAAA<br>AGAAAGAAAGAA</u></font>agaaagaaagaaagaaagaaaattggccacgtgtgttagtgcacacctgtagtcccaactagacaggatgctgaggcgggaggatctc<br>ctgagcccaggagttcaaggctgcagtgagctgtgatcgtgccactgctctccagcctaagatacgggaaaaaccaaagcgtttttcttttctttttttt<br>ctgctgtcattgtatgaaatagtccataggtttccattatatccagttatagagggtgttactgagttacggattttctgcctgctggatctgtccgttt<br>ctgatagagggacattgaagtcgccaactataatagtttctccttgcggtgctgtcgctttttccctcacatattttgatgttctcttgttaggat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	15632477	15632776	1001167	0	+	pAlu17-15575433; RIP_Alu_chr17_015_03	NA	NA	SINE	Alu	Y	gcatatcagttacctcagatacttatcttttttttttgtggtgagaacatttaaaatctgctgtctcaaaaatttcaagtattaccacattgttattaac<br>tgtagtcaacatgttgtacaatagagctcttgagcttttcctcctagctgacatttttagtgacatgcgttgcatttgaacatatgcagttaccatgacc<br>aagctattttatttgtagggctgtacttaactaaaatatctatacatgtgtaccaaaagaaattaacaagaatgttcatagtggctttattgctagtagt<br>cccaaaatggaaacaaaccaatgtccatcaacagtagaattgatagatgtgccatattcatgcagagcaccaccgagcagggaaaaga<font color="green"><u>AATGAACTGCTT<br></u></font><font color="red">GGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGATGGATCACTAGGTCAGGAGATTGAGACCATCCTGGCTAACACA<br>GTGAAACCTCATCTCTGCTACAAATACAAAAAAATTACCTGGGCATGGTGGCAAGCGCCTGTAAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>TGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCATCACTGCACTCCAGCCTGGCCGACAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AATGAACTGCTT</u></font>catgaaaccacttgaaggagtgtcacaaatgtaatgctgggccaaagaagccacacacaaaaccattcctactgaatggccctccatg<br>cttccatttatgaaacagacaacactaattggggctgctaaaaaccaggtgactctttgctttgacaagacaggtgggcagtggttagggagcagacctt<br>caggagagggatttccagattgttatttttatttcattttcttggactgtgtggtagctccaagcatgtgtcctctttgtgataaatcactgagtagtag<br>aataataggattcctgtgtatattatactttaataaacatatttgaattcctttttccattaggacaaataatataaatcataataaatctttgcaattt<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	30338022	30338314	1001168	0	-	pAlu17-30187803; RIP_Alu_chr17_027_02	NA	NA	SINE	Alu	Sg	gtgaaaccccatctctactaaaaatccaaaattagctgggcgtggtggtgggtgcctgtaatcccagctactcgggaggctgaggcacgagaatcatttc<br>aacccaggaggtggaggctgcagtgagccaagatcgtgccactgcactccattctgggcaacggagctagattctgtcttaaaaaaagaaaaatgcataa<br>aggagcacaatggtttagcctggaatcccagcactttgggaggccaaggcaggaagattgcttgagccctaaagttcaagaccagcctgggcaatatagt<br>gagacctcatctctatttgaaaagaaagaaagaaaaatcaaagaaaatgaggtatatatgcacgataggatattattcagccattaaa<font color="green"><u>AAAGTGAAATCC<br></u></font><font color="red">GGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGGGTTCGAGAACTGACTGGCTAACATA<br>GTGAAACCCCGTCTCTTCTAAAAATACAAAAATCAGCGGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTT<br>GAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTAGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAA</font><font color="green"><u>AAAGTGA<br>AATCC</u></font>ttcatctataaagctagaggtttggaaaataaaacctatttgcagcaacatggatagaactggaggacattatgttaagtgaaataggccaagga<br>cagaaagacaagtatcgcatattctcattcatatgtgagagattaagaagttgatttcatggagataggcagtagaatgatggttactgggggctgggaa<br>gcaggtagggatgaagacaagttgattgatgggcataaaagcacagtcagatagaaggaataagttttagtttttgtttgcacagtagggtaactagagt<br>caacaataacttagtgtatattttaaaatagctagaacatttgttatcttcccaatacaaaaaaaaggataaacatctgagatgatggatacc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	62663937	62664247	1001169	0	-	pAlu17-63081380; RIP_Alu_chr17_060_01	NA	NA	SINE	Alu	Sg1	tcggatcactgcaaccttgacctctgtggactcaggtgatccttctatctcagctttccgagtagctgggtctataggtgcatgccaccactcctggcta<br>attttttgtagatagggggttttgccatgttgctcaggctggtttcaaactcctgggctcaagtgattcctctgcctcggcctcccaaagtgctaggatt<br>acaggcatgagtcaccatgcccagcccttgaatggttttaaagtgttattcttatctgaatatttgttttaaacaacaggatttaaactcacaggaaagc<br>ctaaatataaacctctgcacgttaaccctatatacatttttctatgctgtcacttacatatttgaatgtactgctttaaacttccaaac<font color="green"><u>AAGCAGCCTCT<br></u></font><font color="red">GGCTGGGCGCAGTGACTCACTCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCGGATGGATCACAAGGTCTGGAGTTCAAGACCAGCCTGGCCGAGATGG<br>TGAAACCTGATCTCTACTAAAAATACAAAAATTATTTGGGCACGGTGGTGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGGAATTGCTTGA<br>ACCCGGAAGGTGGAGCTTACAGTGAGCCAAGATTTCGCCACTGCGCTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTGAAAAAAAAAAAAAGAGAGAGG<br>AAAAAAAAAAG</font><font color="green"><u>AAGCAGC</u></font>tcccccaggtctcccatcacgttctgaaatcctaacttctattacctaatacaaggctacaaattatgttagtcgggtggtt<br>gggaacaaagcgtgtgccataaaaataaggtaaatgtgaatgtgtacatcagtttgctaagttttttgccactgtctggcctcttaaattgtggtagcag<br>ctattgttcacattgatatattacattgatattgatattgttcacgtcatatatatttgtagtacaaggaagcatttctaaaggaccttgttcattgctt<br>tgcacaaaatagccacttaatatttgttgaatgaattgctggcactatctctggtgttttaatttttatttatttatgtatttatttttgatatggagtc<br>tcactct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	66207362	66207660	1001170	0	+	pAlu17-66671776; RIP_Alu_chr17_063_02	NA	NA	SINE	Alu	Yi6	gcctgtggtcctagttacttgtgagactgaggtaggaggatcacctgagcccaaggaggttgaggctgcactgagctgtgtttacaccattgcactccag<br>cctgaaagacagagtgagaccctgtctcaaaaaaaaagggggggggggaggtggttagagtgtaaattttatgttatgcatactttaccacaattttcaa<br>aaattatttgaaagaagccacacacaaaaatcttgtttagtgaaatcacgtattgtatgatttcgtttatatggaatgtcccaaatgggcaaattcacag<br>gaagtaagtaaatacttgccaggaaatgggaggggaaatggttgagtagggccagtgattctggggcttctttctggggtgatg<font color="green"><u>AAAATGTTCTGGAATT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGATGCGGTAGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTTTCTACTAAAAATGCAAAAAAATTAGCTGGGCGTGGTGGCGGGCATCTGTAGTCCCAGCAACTCGGGAGGCTGAGGCAGGAGAATGGTG<br>TGAACCTGGGAGGTGGAGATTGCAGTGAGCCAAGATTACACCACTGCACTCCAGCCTGGGCAACAAAGCAAGATTCCGTCTTAAAAAAAAAAAAAAGAA</font><font color="green"><u>A<br>AAATGTTTTGGAATT</u></font>aaatagtggtgatggttttacaaccttgtgaatactatactaaaacccactaaattgtgcacttatttaaaagggtgaatttatg<br>gtgtataaattaattatatctcaataaaaataaaaagtggtatgaagaattgggaaaacatatgtatatgtatatatatgtatatatgtatatgtatata<br>tatgtatatgtatatatgtgtatatgtatatatgtatatgtatatatgtgtatatgtatatatgtatatgtatatatgtgtatatgtatatatgtatgtg<br>tatgtatatgtatatatgtacatgtatatatatgtatatgtatatatgtgtgtgtatgtatatatatatgccttgagtcttttttaatcagttcccttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	43566024	43566330	1001171	0	+	pAlu17-43576949; RIP_Alu_chr17_040_02	NA	NA	SINE	Alu	Sp	gaggattctaacaaggaccaaactctgaatgaatgaaaacaggaccgttgcctgacccattcaccattgtatttctagtacctggaacagtgtttgtcac<br>acactggtgctcaaaaaataagctgttgaatgaattgattaataaaataaaaacaaggcacggggtaagtacctccacttcacacactgtgggaagttgg<br>ggtatacaactcttaagtgctggggcaactgtggagctcctgtcattaagccaagctgccaataaggctgaaaacaacttaaatatactgcatattaatg<br>ggaggacattgaaggtaaacagcattcacttttcaaaggaatacgactataagtggcaagcagagacagtgttctttggggctctttaaaa<font color="green"><u>CTGCAATCA<br></u></font><font color="red">GCCAGGTGCGGCGGCTCACGCCCGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCGGGAGTTGGAGACCAGCCTGATCAACACA<br>GAGAAACCCCCATCTCTACTAAAAATACAAAACTAGCCGGGCATGGTGGTGTATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTT<br>GAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCATGCCACTGCACTCCAGGCTGGGGAACAAGAGTAAACTCCGTCGAAAAAAAGAAAGAAAGAAAG<br>AAAAAAG</font><font color="green"><u>CTGCAATCA</u></font>aatggcccacccatctgatgccgggtcctcaggattcagagaaaatgtgtaccaaaaagcccccaggaaactataaatgctgag<br>catgggacttgggtgcctctggaatgtccttctgcctcagctactctgagataacatggttccctgtgttcatggaacccagatggccaaaagtcaatga<br>tccagcacttaaaagaaaagaaagcgattcaagagcctctgtacccacctaggcctcagcctccccaggacctactcacctatactcttcacaacaggta<br>acgttgcctctggcacccatcatatcccctgaattcagcatcaggactgatctgccatcagctctggcagggagaggcccttacaagtgccaagaaaagg<br>aacacga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PLEKHM1:NR:027774:1/11	
0	chr17	43649597	43649900	1001172	0	-	pAlu17-43660519; RIP_Alu_chr17_041_01	NA	NA	SINE	Alu	Sx	ttgagtttggaccatagagaagtcattcttgtgtggacctcagtttactcacctgtacagtataggatggactagatgatctaatggtcaggggattggc<br>aaacttgttcttagggcaccaattagtaaatattttaggttttgcaggccacctggctatgtcacagctgctcagctcggcccttgtaggatgaaagcag<br>ccatagacaataagtaaacaaatgagtgtggctgtgttccagtaaaactttatttccaaaaacaggctgtggccggccatagtttgttcaccccattttt<br>gagctcttgacattctttagtctgtgatttcgataattagtttaggaaaaaagctttgactttcataaataatgcttctggaaatctagt<font color="green"><u>AAAACCTTTA<br></u></font><font color="red">AATTTTGGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATTGCCTGAGCTCGAGAGTTCGAGACCAGCCTGGC<br>CAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTAGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATCGCTTAAACTCAGGAGGCGGAGGTTGCAGTGAGCCGATATCGTGCCACTGCACTTCAGCCTGGGTGACAGAGTGAGACTTCATCTCAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAACCTTTA</u></font>cattttatttttgctttttccctttatcaggaaagtaatgtagaaaatttagaaaacccagaacattaatattttggttcctctca<br>ttagttaaccatctttgggtggacatgtgtacatacatacatacctttttttttttcttttgagcaaaaaagtacatactttttctttttttctcttctg<br>ccacccaggctggagtgcagtggcgcgatctcggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggga<br>ctacaggtgctcgctgccacacccagctaattttttgtattttttaatagagatggagtttcaccgtgttgcccaggctggtgtcgaactcctgagctca<br>ggtg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	65995105	65995414	1001173	0	+	pAlu17-66412496; RIP_Alu_chr17_063_03	NA	NA	SINE	Alu	Sq	agacaagaccagataaacactagtaaattcatgcccttggggccctgtttatagatgtcctcagatccccttctttcacgtgctctttctttaagtcaag<br>tggaataaaattcactaggcttaagatttctcagttacaaccacatctctaacataccttcttaccattacattcaaatcacccagaacctattgggggt<br>gttcccgaaactcttctgttgcaggaatgttgtgaatgccctgaaacccacaccctgaaatgtagaggcagggagcaggctggatggctcccaggggctc<br>ccagaggctcctggggtggcaccagctggaagaacctgccagagtccagtcctgggtcttgggcagtgtctggcttgagccttagaaat<font color="green"><u>CACACTAATGG<br></u></font><font color="red">GCCAGGCGCGGTGGCTCACGCCTGTAATCTCAGCCCTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATG<br>GTGAAACCCTGTCTCTACTAAAAATACAAAAATAGCCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGTAGGCTGAGGCAGGAGAATCGCTTG<br>AACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCACCATCGCACTCCAGCCTAGGGGACAAGAGCGAGACTTCGTCTCAAAAAAGAAGAAGAAGAAA<br>AAAAAGAAAC</font><font color="green"><u>CACACTAATGG</u></font>tggaaggtacaaagagttcaaagagactgatctatgtagccagaatgccagtttattaatttacaatgagaaatcaaat<br>cagaaatgcaaactcatgtcagcctgggtagcattctctttctataaacaagccacagaggaagccaagttatcctcagggtgcttggtaatataaacca<br>gagcctggggagtttgtcacctgattggaatgtttaacagtattggtttctgacagcctaagtgtttgtctctgcaataggtgtgtatacctgtcaggag<br>gaagaacccaagagaccaactggcattcccttccttgataatttctggtattttgagtgtgtgtttctgcttagcagatatttattgagcatctactctg<br>tgttgtataa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	14374634	14374940	1001174	0	-	pAlu18-14364531; RIP_Alu_chr18_014_01	NA	NA	SINE	Alu	Ya5	tgaattactgtttcaggtgttcatctgctacaacaaacatttatcaaacacctagtaggtataagagatcatttaaacccaccccaaaggatacaaagtt<br>gaggaaagcactctttgcctttgcagaaatcacaatctattatcaaagcatatgatagaaatttcaatatctaaaacacaaaatctaaagtgttaagtgc<br>catgagaatgatataagagtttaagaagggagagatacaacaaagtttgggcaagccagtatgtttcttgaaggaatagcacttaatttgtgatgtgaag<br>ataaaatctcagtaaagaaaaatggggaagaagatggtaagcctggcagaaggaatattattagcaagtgcaggaaaatgtactctaatc<font color="green"><u>AAAAAGAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATCCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCTGGGCGACAGAGCGAGACTCCGTCCCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGAGCA</u></font>agtagcctaatgtgactggatttcaatttacctttacatttttctatcatgttatttcatgcccataaattatggcaatagtc<br>taaatgaacttgaatatcagaccaaattgccttgtcttatgtagtaacccactcaagtttctaagcagaaaataacctgacccccattctctgagatttg<br>agaaaaaaattgtgtatccttcactaaagtttggaatgcattttggaaggaaagaggaaagcagaatgaatatgtcctgaccacgtgtattactcatttg<br>ctctgaaagccataccctgcccctttttctgctcagctctgaatgttagtctcacaattaggtttagctaagtgaaggcagaggagcaggcatccaaagg<br>gtggaag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	26363759	26364066	1001175	0	+	pAlu18-26251650; RIP_Alu_chr18_024_03	NA	NA	SINE	Alu	Ya5	tggttcctgcttttaaaatagagggctaattttagatcataaaagtacacccctgaaaacaagatatgattttttaaatgtggcagaaatatagatataa<br>aactttgatgttcagtattttagactttcaaggatctcaacatttgggcaaaagatgcagaggtataaattttaaaaaatttttactttcccaaatagtt<br>cttaaatgtctgcttgagatgaagcatatttcagggtgtacattcagtagcttattgaaccttttaaaatttaggcatattgagtttttacaaaatttct<br>cagtatattaggaaatactcctctaaaggttgggaaagtagtttttagaagtagatgcaatgacgggagaagttaacagtccttcaa<font color="green"><u>AAGAAAAGGCATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAAAGGCATT</u></font>taaaactgaaagataaacatagaaaagtactatgaagacagattttctgtcaggtgcagtggctcacacctgtaatccc<br>agcactttgggaggctgaggcgggtggatcacctcagatcaggagctcgagaccaacctgaccaacatagcaaaactccatctctactaaaaatacaaaa<br>ttagctgagcgtagtggtgcatgaccataatctcagctactcaggaggctgcggcaggagaatcaattaaacccaggaggtggaggtttcagtgagctga<br>gatcgcaccactgcattccagcctgggtaacaagagcaaaacacagtctcaaaaaaagacagattttctttctttttaaatactatatattattccattt<br>tgtatgta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	31746720	31747042	1001176	0	+	pAlu18-31634611; RIP_Alu_chr18_030_01	NA	NA	SINE	Alu	Yb7	atgccactttaaacaatggatcttgtatctggaactgaagtaagtaaacagactttgtctagaagagggaaaaggagaactgaaaggtatttgtttttta<br>cagaaagtagataatgtgaaaatttgtctatctccattttcccaaagtcccattatcaaagatctatcatttgaactggagccaatggtaaatgtccata<br>aatgcaatcatgtcactaacacaatagaaaaatattaactaaagctcataaatttataacaatcatgctgtaactttaacaaatatggaataatttacat<br>acagttgaccttttgggtctgcaagttctgcatctgccaattcaaccaaccatggatgaataatatttgggaaaaaataaaaatat<font color="green"><u>AATAGTAAAAAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATAGTAAAAAAAA</u></font>atatatagtataacaactatttacaaagtctttatatcatattaggtattataagtaacctag<br>ggatgatttaaagtatacaaagggatgtgcataggttatatgcaaatactagaccattttctatcagggaattgagcatcacaggaagttcctggaccca<br>atccctaatggataccaagggaataccgtataacgttcagttcacctttaaaataagtcatctttgatttcttacacctcctacatatccagttactaag<br>tgttaattgttaaacacttctctaatctgtcgatacttgcttgtatctctggcttggattacttattcaatttactacttcttctacctgtttcatattt<br>tggccccttcattcttctcttag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NOL4:NM:003787:1/11	
0	chr18	32661973	32662274	1001177	0	+	pAlu18-32549864; RIP_Alu_chr18_030_02	NA	NA	SINE	Alu	Ya4	ggactggggagagtggccataagtatggagttctcacctgcaagtcttggggagagggtgaaatggctgaaatctggggaagaatcctggagcttctagt<br>ctctagtgccagggatagtgacctcagcctcaaaatgagcaacttgagaaaggggcgcattgtgtagacgtggaccgtgggtttgcgctggtccactcat<br>accagtatattttaccttatactaaaagcctctctgtgggctgccatacatagagttcatgtagtggcctggcctgtataactgttgatagtatgatgtg<br>ggtaatggttcagtagaaattctctgagaaaatggggaaagggatcagctttaggtttcttacttgcaatttaatttgacctaaa<font color="green"><u>AATACATACGTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AATACATACGTTCTG</u></font>aaaattagaacttaaaaatggcattctctaaagacgtttgtgcccagaaatcagcattggtttgcctaccaaattagttaagc<br>ttcttcttttcctggcatttaaagccttgagcaatctagctgcattccacctttccaacatttatccccacagcctccctacccataacctgtatttcct<br>caaacgcacgtttcacttatatgccctgattccttgtctttgcttggagtatctcctttgaaattcatatcaaatgccactttgccctattcttcctgat<br>cacattcaacaaaatgtgagctctctctctcttttcaatgatcagacctttacaaagccttacgctcattgagtacttgttttaagtcttcagcattcgg<br>ag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MAPRE2:NM:001143827:3/8	
0	chr18	37061647	37061963	1001178	0	+	pAlu18-36949538; RIP_Alu_chr18_035_01	NA	NA	SINE	Alu	Yb7	catataatataaactggatagataatgtagttttttttttcttaacttcctggattattaatttaaatgtgtcattttgagcagattgcgagctactaca<br>ataaagtttgagagcaaggctgagtaatcatattgcacaggggtctaatggtaaacagggacattgagaaggaacatggaggagcaggggccaggtttta<br>atggagccacttcctcagcgtgtgctactcgacctagtttctgcttcatacagtccagcttatgcaactaggtaaaaagcaggctgtggatgaaaaccag<br>ataatgtttctcggttgagatttccacagcaaataaattatgaaattaaaaaagataaatgctcacatatggattgtgcaactcata<font color="green"><u>AAGAATCAGATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCAGATTC</u></font>atagactgttaggtttttatgcacaactatttacattcaattattcagtcaatgccatggagacagggtt<br>acaagattgaaagatgaatattttctgttacccgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaacataacaagaaact<br>gctacctggatatcaagaagcaatcatcttgcagttaatatgaaagataaaaacaaaacaaaacatatcttcatcacagctatccaagcagaacatcaat<br>gactaaacaaatggcaagcccaaattaaatcaaaaggcaataacaagaaaaagagtgtgggagccatagatcattgcacagggaggtcagtgagctctca<br>aagcctgaggagatgac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC647946:NR:024391:3/4	
0	chr18	47019869	47020173	1001179	0	+	pAlu18-46907760; RIP_Alu_chr18_045_01	NA	NA	SINE	Alu	Ya4b	atttcatggcaccacccttctaggcagctcaaactctaggagagtagactccaggctaggctcacttgcttccttgacctcagtgtaggagacctcagcc<br>ctaagtctctcccctcgactccacttccattgctgatgctggattccatggtgtttcctcggtaattccctcccctcacatgagctttcaactgcatgct<br>aactcccagattaataccccagcgccacatctgtctcctgagctagaccctgatagcaaactactccctggacatcctttctgggaggtccctgaagacc<br>tgaggttatttgaaacctaacatgcccttaaacagaactctttgtcttctcctccgggttcctcttttatgttgcatggtgac<font color="green"><u>AAGAGTAACAGACAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAGTAACAGACAATG</u></font>attctataagcttactagattctaggcagtattttcagtgtttttacatgcatttcctcaagtaatccttaggacaac<br>tatttgtaaatgatgaagttgatctggctgctacaatgtgaagaagaaaaaaaaggaactccccggcaaatccaaggtccggcagctgggagtggcagcc<br>ctgggatccaaggcagccttctgtaaccaagctctgcatccctaggcgaccctgcctttctcccttccttgtttggcgacttccccatacacctaggatc<br>ttaaaccagaaagatgagagactcccctcttcttgtctttgcacatacaattatttaacaaaatctggattattcttttaagtggtcttcttgccctaat<br>tattt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	62385781	62386081	1001180	0	-	pAlu18-62170652; RIP_Alu_chr18_060_01	NA	NA	SINE	Alu	Ya5	aagttaaatagccaaaaatgtgtctcaaagattaatgctcttgaaatgtaatgcagaaaaatttggacaataatggaggaaaaccttctttataaaacag<br>gctaaacttaaaacaaaatcagtctcacaaagttagcactaagcattaaaatcactgaggaaaacctttttgctttttttcttctccttagacagtgtca<br>gcagtcgcaaatcaggttagggtttagatcactgtgtgttctaaattatatttatgcccttgtaaagctgtgcaacatgttgccttgcgtaagaaatctt<br>taaaccacatgttctggcaagtaactgctgatatttacttccaaaattcgatctggttgctttagatacttcagcaatgacctttaa<font color="green"><u>AATAATCAATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATAATCAATTTT</u></font>aagactatctttcagatgcattcttgtattgtaagtcatcactggcttataccttattatgataatttcaaaacaattaccttatt<br>tcttccaatgtcttttgatacctaagatttctagacttaattttagaacataaatcttcataaagtacaatatattctattaaaaaaaaattccccatca<br>ttggaaccagcataccaaagttgcatcaagatataaagttgaatgatgtaggtaattataaagattattttcatctgaagtatccacataattgaagcaa<br>atgtgatttctgcatgtgggaattatctcaattttccacttcagttggttagtgtaaaaataaagaattttaactttttacatcctcaagcaattaatac<br>t	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	63533254	63533582	1001181	0	+	pAlu18-63318127; RIP_Alu_chr18_061_01	NA	NA	SINE	Alu	Ya5	accattttagctcagaaatgtggtctctttgtgtcttatttcccaagtttttaaaagcagataatcaggaatttttatactgttttagttttgtcgccac<br>tattatagactctggattttcacacagtaagtgctgaagccaatgagattaagtattcacagggggtgcatgtggggcccacagcctggcatgaaaattg<br>atttctagtacacaaataattcattctttatgacacctcagaaagtggtgtgaatctcgtttctaggcattaggtatcaggatttgtaactcaaaccttt<br>taagacttctgaacaaatattactggcaaaaagcaaggtgaggaggtggagatggggaataagaacttgaaaatcaagttcaatt<font color="green"><u>AAGAATGAAACTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAACAA<br>AAAAAAAAAAAAACAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAAACTATAG</u></font>gaagtacctggactttagactcttaaaaaaaaaaaaaggtacttgactacatgtt<br>aagtttgtgttccagtgatgtgactaattaaagctacatgtaacatgacggatggggatgcactgacattaccagaagtttaatgctggaaggcatccca<br>cgtatcaatgctaacccaaaccttacagagggaaaacttgaggtgtagggtaagttcgagggtttgtaggagtacatataacaagttagaggatatgacg<br>gggtaagattctaggtctccttattctcaatcactgatttttatttaaactgcacaagaagtacatcgtgaaaatataaatatgtttacgcctatatatt<br>gctgaaataattcatgttatccgaagttgt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CDH7:NM:004361:11/12	
0	chr18	71273414	71273717	1001182	0	-	pAlu18-71058285; RIP_Alu_chr18_069_01	NA	NA	SINE	Alu	Yc1	aaaatttagaaggcagtgtagagtattcttatatgtcccccacacagatgcccctgttgttacatcttacatctttacagtatcttcattacaagtaatc<br>gatcaatattgatgcattagtataactgaagttcaaagttgagttcctcagttttacctggtgtcttttttctgttccaggattccatccaggataacac<br>attatatttaggcatcctctctccttagtcttttcttggttgtgagggtttcccagattttctttgcttttgatgaccttgacagtttagaggaatatca<br>ggtatattgtaggaagcccttctactagaattaatctgacatttatctcatgattagattgagattgtatattttttgggata<font color="green"><u>AAGATTATAATGTGTCA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGATTATAATGTGTCA</u></font>ttttcgtcacatccaatcaaagataggcactaccattgtgatttttgactgttggtgctgaccttgaacactgctggga<br>tggtgttgtcaagtttctccacaggttctccacaagttactcttttgttgccctttcagtcgctatgagcaacacccacttaaggagcaatgacttatgt<br>tctccttctttatggggaagtatctctctgaattatttggaattcttctgcatgattgatttgtctcttctcccttatgtttttcagtcaacagtgcgtg<br>ctatggatatttattttgtattttgtgttatgtttcaatactattttattctaaacacatatttttggttgtcatttaaaagtttatttttacacaattg<br>cact	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	22892495	22892804	1001183	0	+	pAlu18-22780386; RIP_Alu_chr18_021_01	NA	NA	SINE	Alu	Yb7	ttacagagaaatgtttcttatattaccctttcaagatccaaactttttaattttaataagttaattaatgtaatagatcatcacttatactgggaaaaca<br>tattcatcagtacagacagtcctttcataaatcccaattacaatacccacaagcattcaaagagctttgagaaaataacagatctaaaaataattatttt<br>atatccatgttttgatagcgaattttacaaatatatcaagaagagaatggcagaccaggtactaatattcaaaaacttctgctgcagcaaaatcaatgtg<br>gaaataacaaagcttgtatactaggtaatgattgaactgaccttacctccaaaaccggaaaaggaagcatactcagcctatggttc<font color="green"><u>AGAAGTTGGAACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAGTTGGAACCA</u></font>actatagatgatcactttgtctttggtaactgcatggaagaacttggtgggagccctgacagttgaacaaagtgac<br>acactcagccccaccactttctctaaaactgagaggagcaaagatttggtgagccgtttttcacctcatgaaataagtgatagtcaagaacagtggtctc<br>tgaaatacagggtacattatcgtgcaggagagaggatactctgaatagtcagaaaccaatcagaacggacaccaatcagaaatagccatccaggtactaa<br>ccagaccttcctgagagcaaggagataaacagtactccagtcagctgggtgggctggcttctccagccccttttatcccatctcatactaatgcagtcta<br>cagtgtccag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF521:NM:015461:3/8	
0	chr18	57668870	57669168	1001184	0	-	pAlu18-57453741; RIP_Alu_chr18_055_02	NA	NA	SINE	Alu	Y	gagactgagggccaatattcaacacttaaagaaaagaattttcaacccagaattgcatatccagccaaactaagcttcataagcaaaggagaaataaaat<br>tctttccagacaagcaaatgtggaggaattttgttaccacaaggcctgcctttcaagagctcctgaaagaagcactgaatagggaaaggaaaaaccagta<br>tcagccactgcaaaaacacagcaaaatataaagaccaatgacactatgaagaaactgcatcaactagtgtgcaaaataaccagcagcatcgtgatgacag<br>gaccaaattcacacataacaatactaaccttaaatgtaaatgggctaaatgccccaattaaaagacacagactggcaaattggatt<font color="green"><u>AAGAGTCAAGACCC<br></u></font><font color="red">GGCCGGGCATGATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCTAGATGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGTGGCCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGTGGAGCTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAGTCAAGACCC</u></font>atcaatgtgctgtattcaggagacccatctcacatgcaaagacacacataggctcaaaataaagggatggaggacaatttaccaagc<br>aaatggaaagcaaaaaaaaagtaggggttgcaatcctagtctctgacaagacagactttacaccaacaaagaccaaaaaagacaaagaagggcattacat<br>aatggtaaagggaacaattaaacaagaagagctaactattctaaatatatctgcacccaacacgggagcacccagattcataaaacaagttcttagagac<br>ctacaaagagacttagactcccacacaatagtgggaaactttaacacctgactgtcaatattagacacatcatccagacaggaaattaacaatgatatt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	75997297	75997616	1001185	0	+	pAlu18-75732179; RIP_Alu_chr18_074_01	NA	NA	SINE	Alu	Yc2	ctgtcaattcagatcgcagtcaacccattcaaaatacatgcaataagcaagttctcagttgaaattgacaatttctagtgcctattttgctaaattgtga<br>tcttcgttccagagcataacagttatctgttatggagtgtggcggtctcattaatttatgcttagaactgctcctgacagtggattgtctttggcttcca<br>agaacctttcattgactgttttaagctttaaacaaaaatactaccaaggtaatgtgtgtcatctactctgtactctccattgaccctgtttcttatactt<br>tctagagggaatgaaccaaagcatatttacaaaagggtctctatcaaggccggggtggggggggacaagagagaaagaatagcttaga<font color="green"><u>AATTAAGTCCCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAAATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTAAGTCCCT</u></font>tcaaattaatttgtgcagacactttggctttggatcagattatcaaagtgtttagcacttacggctca<br>gcttccaaaatgtgcatgcccaatttaattaggggtaattttcattcattacgcactaaaggctggttaggctggtggtggctcaaaactctattctaac<br>agtgatattatatgaaaagcccataatgtcacaatgagttcactcaaagaagagctgccacctaggtaagtgaggagacagtagcagcccctccctggcc<br>gacccatccctgggctgaagaatgtaaaccatcgggattggatctgacatagcaagtcaaggcctctgcgtccccagcatccctggcgtgcgcgtctctg<br>tcgattagagaccaaatctg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	55345940	55346154	1001186	0	+	pAlu18-55130833; RIP_Alu_chr18_053_03	NA	NA	SINE	Alu	Ya3	cagggcacggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacaaggtcaggagtttgagaccggcctggccaacatagtg<br>aaaccccgtctctactaaaaatgtaaaaaattagccacgtgtggtggtatgcacctgtaatcccagctacttgggaggctgaggcaggagaatcgcataa<br>acccgggaggcagaggttgcagtgaaccgagatcacaccattgcactccagcccaggcgatagttcgagattctatctcaaaaaaaaaaaaa<font color="green"><u>GAAGAGAA<br>AAGAAAAGAGTGTGGTGTTGATGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAATTGACCCGACTTCGATTCCCAGCCAATGCAGCAGGCTGACCTTT<br></u></font><font color="red">TGTCCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGC<br>TGAGGCAGGAGAATCGCATAAACCCGGGAGGCAGAGGTTGCAGTGAACCGAGATCACACCATTGCACTCCAGCCCAGGCGATAGTTCGAGATTCTATCTC<br>AAAAAAAAAAAAAAA</font><font color="green"><u>GAAGAGAAAAGAAAAGAGTGTGGTGTTGATGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAATTGACCCGACTTCAATTCCCA<br>GCCAACGCAGCAGGCTGACCTTT</u></font>cgtcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggtgcct<br>gtagtcccagctacttgggaggctgaggcaggagaatgcatgaacccgggaggcagagcttgcagtgagccgagatcgcgccactgctctccagcctggg<br>caacagagcaagactctgtctcaaaaaaaaaaaagaataaaaaagaaaagaaaaactaactattaagttctgtgttcactacctggatgatgggatcaat<br>tgtaccccaaacttc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ATP8B1:NM:005603:14/27	
0	chr19	8514426	8514718	1001187	0	-	pAlu19-8409311; RIP_Alu_chr19_008_01	NA	NA	SINE	Alu	Ya5	tctcctgagggacaaggacccctctgcccgtgtgagaaccatcccttatataaagtgattcttcacagaaatccctcaagtcctgcgctgctctaatgca<br>tgtaaggtgtggagagcactattcacagcaccattccagctccaaggccaccactgaactacccacatgactcaagctctttctgtctctagcgctttac<br>cagcaaaaccagcgcaacctgtatgcatggtagctcagagggacactgtgacaatcaacaaagaatggcaaaacaaaaagcagctcatctagggaagcag<br>tactgcatgtggctaagagctggggtcaccatgtcgtcactaggcctcggtcctatggaggctactacctacacgcttacagcttt<font color="green"><u>AAAAGAGACTCTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAGAG<br>ACTCTTAG</u></font>gcacacagtgaggcaatgatgtatttttctaccaataattttattgagaagggtagagagggggactgattcactcctagccttctactgtt<br>caggctttaaaactagcaaaccagagccaaggctgagaaaacctaggcatcataatcattacagactagcaaagggacaatttagctttcaaccctatga<br>ctgcaaaatatggtaatggggaagtccattggagaaccccccctcccaaaaaaacaagcaagctaatctttgcaggctagtatctctttccctaaccaga<br>ataaaatcaaagagctgagtgaaagcaaaggcctggcagcatgcattcaaataatccaaaaccctgtcttctaatcttgagctcacaatctgac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:HNRNPM:NM:031203:1/17	
0	chr19	19967363	19967664	1001188	0	-	pAlu19-19812470; RIP_Alu_chr19_019_01	NA	NA	SINE	Alu	Y	caaaataatctggctcagatggagatctgtttttctctccaatgctttgggtgtctgtttcaaaagccctattcatatccgatggtgtctacatgaggtg<br>gactttcatagcgagaacttttagagctatttctatctggacttatgctggaaattcagcagtattttttccatgtccctactataggtagaaactgagg<br>ctgaaacactaatcacattctcatgattgtgaaggtgtaattctacccaggaggcctgcaggctctcctcctgcagctcaggcctcactctctgatgtga<br>cactagagtgctgctgtggcaaatggggttcatataaaatgtgagctgtgctccaggctgtgcctcagtggcagatgttataggtcaag<font color="green"><u>AGAGGACACTA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAATATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCCAGGCATGGTGGCAGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCATGAACCCAGGAGGCGGAGCTTGGAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGGAAGACTCCGTCTCAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAGGCCACTAG</u></font>gtaaccaggagaaagcaagcaggagtgctgtaacccaatgccagggagtacagagccactgctctaaaatgtaaatagccaaaaag<br>atagaaccctattcaaccatttttgtagcacaatgaaagcctaccttcagaaggcacctggattaaagctactaaactacttcctgttatgaagatgtga<br>aaagtttgtcattgaatataagcaattagcatacacagatggcctcttcaatctgttcataggatgaactatgtatgacatggcgctggaaattcttcta<br>tttgtgaactaattatggtgaccatctttctgtctttgcgatcccttaagcagactgatgatgatgcatgtcacaattaagttcaattgtgtaataaaac<br>cat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	26489823	26490135	1001189	0	-	pAlu1-25722767; RIP_Alu_chr1_026_01	NA	NA	SINE	Alu	Ya5	tcgacctcgggcggggtccagctggaggggtcctcacctcatcaaacatacaaggcgaaaatgaccagagtcagcccgcatatcaggatgggttttttat<br>ttaaggtacaactttccaggaagttggagagctccagaggactgcgtccatcgccctctccagcctcatttaattcaacaaactgtgcctgtggccctac<br>tatgtgcgccgtccctgtactaggaaaaaggtcaaagattaactagagaacccagagtaccagcgggtcccacaaaaggtgacaaattgaggcccaaaaa<br>taggactgtacttgggagctcagagcaggtgaggctgactgggggcattcaggacggcttcctggaggagaatatacgttatctccgagaagga<font color="green"><u>AGAAGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAG</font><font color="green"><u>AGAAGG</u></font>aagagcagagagaaaaggaacggcaacccaggcaaaggaaggaggtgcatgaaggatgcaggcttggaggtgcgaacctgt<br>gatgaaaataggcgaacttgtgtgtccttgcaggaaagggaggcagtggcaggagcctgccggctggcaggaaaggtttccttcttttctttttttattt<br>ttatttttattttttgagacggagtctggccctgttgcccaggctggagtgcaatggctcgatctcggctcactgcaacctccgcctctgggattcaagc<br>gattctcctgcctcagcctcccgagtagctgggattacaggcgcgcgcctccaagctcagctaatttttgtatttttagtagagcccatgttggccaggc<br>tggtctcgaactc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	68013874	68013875	1001190	0	-	pAlu1-45077537; RIP_Alu_chr1_067_01	NA	NA	SINE	Alu	Yd8	gcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaaatattttcaacccagaatttcatatccagccaaactaagct<br>tcaaaagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcttgaaggaagcact<br>aaacatggaaaggaacaacaggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaa<br>taaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaa<font color="green"><u>AAGACACAGACTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAACAAACAAACAAACAAACAAACAAAC<br>AAA</font><font color="green"><u>AAGACACAGACTGG</u></font>caaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctcaaa<br>ataaagggatggaggaagatctaccaagcaaatggaaaacacaaaaaggcaggagttgcaatcctagtctctgataaaacagactttaaaccaacaaagg<br>tcaaaagagacaaagaaggccattacatcatggtaaagggatcaattcaacaagaagagctaactatcctaaatatagatgcacccaatacaggagcacc<br>cagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagacttcaacaccccactgtcaactttagacaca<br>tca	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	46366121	46366436	1001191	0	-	pAlu1-45752472; RIP_Alu_chr1_046_01	NA	NA	SINE	Alu	Yb7	acatgatggattaaaaatttaaatttaagacctgaaactataaaaaccctaaaagaatacctaggaaaaactcttatggacattggcctaggcaaataat<br>ttatgactaagacctcaaaaacaaatatgaccaaaacgaaaatggacaaatgagacttaattaaactaaagagcttctgtacagcacaagaaacaatcaa<br>cagaataaaaagacaacccatagaatgggagaaaatatctgccaactacgcatccaacaaaggactaatatccagaatctataaggaacttaaatcgtaa<br>gaaaaaaacaaataaatctgctaaaaagtaggcaatagaaacgaacagacacaaaagaagacaagtgaccaacaaactcatgaaaaa<font color="green"><u>AATATCCAACATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATATCCAACATC</u></font>actaatcatcagagaaatgaaaattaaaccacaataagataccatcttataccagtcagaatggaaaatga<br>cagatgttggtgaggatgcagagaaaagggaatgcttatatactgttggtgggaatgtaaattagttcaacccctacagaaaatagtatagtgatttcca<br>cagaactaaaaatagaactaccatttgatctagcaatcccactactggctatctacccaagggtaaatcttttttttttttttttttttttgagagagag<br>agagtctcgctctgtcgcccaggctggagtgcagtggcaccatctcggctcactgcaaccactggctcccaggtacaagcaattcttctgcctcagcctc<br>ccaagcatctgggact	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MAST2:NM:015112:4/29	
0	chr1	57242626	57242946	1001192	0	+	pAlu1-56600233; RIP_Alu_chr1_056_02	NA	NA	SINE	Alu	Ya5	aacagcatgaaacaaaatgaccacgagccctcattttgatcactagtcaaattttaaaatatctttgtttcaaatttcagagtgtcttctttgaggtgca<br>ctaacatctgaccccatttattttacggagagggaagtgaggtcaccctctgaactagtggtaggcttttaaataggagcctggtctcctgactgcctgt<br>tctgccacctacagcattcgaccttgatacagacaaacactgctattacaaacaaacaacaaatctctgccatttattaagagcttacaacatcggaatt<br>ccactttgctgaattagagatatttatctcaatcctcacaacatccctgggggaaggatttgatttcactatttcctatatt<font color="green"><u>AGAAAATAGAAGGCCCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGG<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATAGAAGGCCCAG</u></font>agatatcaaataactttcccaggatcacacagctagtgtgtggagctcaaactatgaatcc<br>aaggttatctgactcctaaatcaatgcccttaacttcatgtaacatactccctggatcttctaatttttaattcattcaatttaaacacactttaattat<br>gcagctggtaagaaagaaatattagaccatctctctgcttttgaagaatttataatttagtcagggaaatgagatacacccagggaaacagaaaatcaca<br>aaaatagactggatatacttgagtcttaagccgagtgctgtctaagtccattctattcttcagccaacatttattgaacaactattaaatgctgtatgcc<br>cccttccccatatacacctta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C1orf168:NM:001004303:4/20	
0	chr1	93358911	93358912	1001193	0	-	pAlu1-58314076; RIP_Alu_chr1_089_01	NA	NA	SINE	Alu	Yc2	atacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttgattggaacatttagcccatttacatttaaggttaatattgtta<br>tgtgtgaatttgatcctgtcattatgatgttagctggttattttgctcgtgagttgatgcagtttcttcctagccttgatggtctttacaatttggcatg<br>tttttgctgcggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatctctgagcatt<br>tgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagt<font color="green"><u>ATGTTGA<br></u></font><font color="red">AGGGCCGGGTGCAGTGGTTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGTGGTGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAT<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTTAGCCGGGCTTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATG<br>GTGTGAACCCAGGAGGCAGAGCTTGCTGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGAGAGCGAGAGTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAGA</font><font color="green"><u>ATGTTGA</u></font>ctattggcccccactctcttctggcttgtagagtttctgctgagagatccgctgttagtctgatgggcttccctttgt<br>gggtaacccgacctttctctctagctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcga<br>ggagtatctttgtggcattctctgtatttcctgaatttgaatgttggcctgccttgctagattggggaagttctcttggataatatcctgcagagtgttt<br>tccaacttggttccattctccctgtcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcat<br>ttctttttattcttt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM69A:NM:001006605:1/5	
0	chr1	67201223	67201536	1001194	0	+	pAlu1-66558828; RIP_Alu_chr1_066_01	NA	NA	SINE	Alu	Yb7	tctggtaaccaccattctactctctaattctataagatcaacttttatttttatgttattttattttattttattttattttatttagttttttgagatg<br>aagtctccctctgttgcccaagctggagtgcagtggcacgatctcggctaatagcaacatccacatcctgggttcaagcgatcctcctgcctcagcctcc<br>caagtagctgggattacaggcatgcaccatcatcctggctaatttttgtattttcgatagagacggggtttcaccatgttggccaggctggtcttgaact<br>cccagcctcagatgatccccgttccttggcctcccaaagtgccactgtgcccagccaagatcaacttttaaatattccacat<font color="green"><u>AAGAGTGAGATCGTGTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTGAGATCGTGTGG</u></font>tattggtctttctgtgcctggctcatttcatttaccacgtttttaatgcattataattttttattaaa<br>tatgttcagattatttttcttcaaatgaaggaagttgtactttaataaaaatcaggacatctcaaacttgactgtatttctcaatcaaatgctggttctg<br>aattgatgctaaaaagaaatatatgtgtatacatatttaaataatataaatatttatttataatatttacatatacaacctagatacatataaaacctat<br>acaatctataacatataaaataacacattatattcataaatataaatatttatacaaatattttaaatataaatatttatacaaatattttaaatataaa<br>tatttatacaaata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SGIP1:NM:032291:21/25	
0	chr1	86405806	86406121	1001195	0	+	pAlu1-85698023; RIP_Alu_chr1_086_02	NA	NA	SINE	Alu	Yc1	tatttctgtttcattatgtgcagtgtgcttatattatgtacttgcagaattttactatgccagtatctagtgcctaaggagttcaaataaaccagatgag<br>gaaatgatgtagcacagagattatactgaatcatatctgttactgaacataggatatatactgccctcttaatttcttttctggcatgaagtagtagtat<br>aaataaataaaaataatgactactcacctgtgctatctacttactgagtcagtctttgaaactaagactgtgcctagtatgtcttattaaggtttccaaa<br>agttgaagataaactatctacaaacactggggatgaattgaagaaaaagcaattttatacaaaccctgcattcattaacacttttaaa<font color="green"><u>AAGTGCCATAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTGCCATAAG</u></font>atatattcagccatttatttagtcaagaaacatatttgagagcataatacatgcaaggcatgctaaataatg<br>taaaatgttttatattatcgattacatttagaatataagacaagcacttcatgattatggaggttcctgattagacaatagtctactttggagtcacagt<br>tcctccacttcagacatttggatacataaagttttataaaactgaatggtctgcttagtatccaaatagggatttcagcttctaacgtttccctaacaac<br>tatttgactcttggatcaaaaatgtagtaataaaataaaagttcagaacaaagttttgcccgaggaaggtctggcagtgatcaagagaatatgcctggaa<br>tgtctactcaacagat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:COL24A1:NM:152890:24/60	
0	chr1	91624788	91625056	1001196	0	+	pAlu1-90961213; RIP_Alu_chr1_091_01	NA	NA	SINE	Alu	Ya5a2	tatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacttcgtgatccgcccacctcggcctcccaaagtgctgggatta<br>caggcgcaagccactgtgcccagccaaagtttcccctttttataaggatgccttattttggattagggcttaccgtaagatctcaacataactaattaca<br>atggcagcaaccctatttccaagtacggtcccattctgggggttaggacaccgatatatgaattgttgggggacatgattcaactcctaacaagggactt<br>tgcagaagattaaagttatagctttgagatgggaaaattattctgaattatcctggggggcccaatttagttacttgagtccttaa<font color="green"><u>AAGTGGAGAATCTT<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACGAAAAATTAG<br>CCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC<br>CCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTGGAGAATCTT</u></font>tcccatctgcagtcagg<br>gagagattggtgacgatggaagggtcagagaaatgcaacattgccagctttgaagatggaggaaggtgccatgagccaagaaatgatggtcgcctcagag<br>gctagaaaaggcaaggaagcaggttctcccctgaagcctccagaaaggaatcagacgccgtgttcctagttcagtggcctgtgttggatgtctgaactac<br>agttgtaagatcatacatttgtgttattttaagccactacgtttgtagtaatttgttataacagccatagaaaactactaatacaacctcccccaaccac<br>agctcctaagtttgccatgtgatctctcatcccccgataaataatgcttctatgctgggagtaagtcac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	14712758	14712759	1001197	0	-	pAlu1-93327698; RIP_Alu_chr1_014_01	NA	NA	SINE	Alu	Ya5	agtgggggccaatattcaacattcttaaagaaaagaattttccaccccgaatttcatatccagccaaactaagcttcataagtgaaggagaaataaacta<br>ctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagtgctaaacatggaaaggaacaactggtac<br>cagccactgcaaaatcatgccaaaatgtaaagaccattgagactaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcatcatgacag<br>gatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggata<font color="green"><u>AAGAGTCAAGACCC<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTCAAGACCC</u></font>atcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaaaggatggaggaagatctacca<br>agcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattac<br>atcatggtaaagggatcaattcaacaagaagagctaactatcctaaaaatatatgtacccaatacaggagcacccagattcataaagcaagtcctgagtg<br>acctacaaagagacttagactcccacacattaataatgggagattttaacaccccactgtcaacatcagacagatcaacgagacagaaagtcaacaagga<br>ta	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	158629388	158629699	1001198	0	-	pAlu1-155407159; RIP_Alu_chr1_155_02	NA	NA	SINE	Alu	Yb7	tctgtttcttatatttaaagtgagattcttataaatagcatataatcaggccttgtttttattctattcaatctggtaatttttcttttttaattgtgat<br>atttagacaatttacacttagtgcaatcatcaatatggtttattttaaatctggcaagttgctatgttttttctttttatctatcactttatgtctcctt<br>tagatcaattttgtatttattgtgattccatcttatcttcaaattggcctattagctacaattgctgttttgtgtttgtgtgtgtatgtttattatagca<br>cagtgattttgccattgtgatttggagtccttttagggtctctgacacactcttagtggattcacaaagttaaaatattttcat<font color="green"><u>AATAATGCTAAGACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AATAATGCTAAGACTA</u></font>ttattttcttttacagacttattcttttataagcatagaatggagtttcccagagcctagagatgggtgatg<br>atgtcactgttctgtctaatggagtatatgcttgtacattcttttctttcaaagcttcttgttttgatttcttatatgggaactattaatcagtctaact<br>atataagcaaaagatattttgcattcttaataatttttaaaattgtaaagggatcccaaaagcacaaatttgaaagccactattccaggaattaaaatat<br>agatttttttaatctatcatagtctaatttcaaataatattatgcatttcatgtttaatataagattcttaaattgatacttccatttgttttcaccctt<br>gtgctattggtg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SPTA1:NM:003126:18/52	
0	chr1	160935036	160935338	1001199	0	+	pAlu1-157712809; RIP_Alu_chr1_157_01	NA	NA	SINE	Alu	Ya4	cagcctgggcaacagagggagactccatctcaaacagaaaaaaaaacaaaaatgttttgactgcagttcaaaaattgtttcaaaactttgttgcaatttt<br>aaaaatatttctcaaaattaaaatgtttggaagactgcccaaacaatataaacaaattcaattgaaacatgcatttaacttttataaacttatatttatg<br>actcaacgacaaaaaagcaagcaacccaattaaaaatttgggcaaagtaggacttacagtatgatgttgggaaaaaaaactggacaaaggacttggatag<br>acatttcttcaaagaaggtatacgaatgggcaacaagcacatgaaaagatattcaacaccactcatcattagggaaatgcaaatcaa<font color="green"><u>AACTACAGTGAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AACTACAGTGAAA</u></font>taccacttcacaccctttagtatggttattaccacggggaccgagggaggtgaacagaaaacaagaaatgttgatatgaatggg<br>ccgggcacgatggctcatgcctgtaatcccaacactttaggaggccgaagtgggtggatcacttgaggtcaggagttcgagaccagcctggccaatatgt<br>tgaaaccccgtctctactaaaaacacacaaaaatgtgctgggtatggtggtgtgcacctgtaatctcagctactcgggagtctgaggcagaagaatcgct<br>tgaacccaggaggcagaggttgcagtgagccaagatcacaccattgcactccagcctgtgcgacaagagcaaaactccatctcaaaaaaaaaaaaaaaaa<br>aga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	164520924	164521236	1001200	0	-	pAlu1-161216853; RIP_Alu_chr1_161_01	NA	NA	SINE	Alu	Sp	ggtgctgctgaaaagatacctgaaaatatggaagtgactttggaactgggtaacaggcagaggatggaacagttgggagggctcagaagaagacaggaaa<br>atgtgggaaagtttggaacttcctagagacttgttgaatggcttcgaccaaaagcctgatagtgatatatacaatgaagtccaggctgaggtggattcag<br>atggagatgaggaacttgttggaaactggaacaaaggtgactcttgttatagtttagcaaagagactagcagcattttgtccctgccctagaagtttgtg<br>gaactttggccctgagagagatgatttagggtatctggtggcagaaatttttaagcagcaaagcattcaagaggtgacttgggtactgtta<font color="green"><u>AAGGCATTC<br></u></font><font color="red">AGTTTTGGTGGGGTGTGGTGGCACACACCTGCAATTCCAGCACTTAGGGAGGCCGAGGCGGGTGAATCACCTGAGGTTGGGAGTTCGAGACCAGCCTAAC<br>CAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGTCTTGGTGTCACATGCCTGTAATCTCAGCTGCTCAGGAGGCTGAGTCAGGAGAA<br>TCTCTTGAACCCAGGAGGTGGAGGTTGTGGTGAGCTGAGATGGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCTTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGGCATTC</u></font>ggttttaaaagggaagcagagcataaaagttcagaaaatttgcaccctgacaatgtgatagaaaagaaaaacccattt<br>tctggggagaaattcaagctggctgcagaaatttgcataagtaacgaagagccaaatgtcaatccccaagacaatgggaaaaatgtctccagggcatgtc<br>agaggttttcacagcagcccctcacatcacaggccagaggcctaggagaaaatggtttcgtgggctgggcctggggtcctcgagcggtgtgcagtctatg<br>gacttggtgcgccacatcatagctactccagccatgactaaaaggggtcaagatacagcttgggcttttgcttcagtggtggaaaccccaagccttggca<br>gcttccatatgat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	180293003	180293313	1001201	0	-	pAlu1-176813158; RIP_Alu_chr1_177_02	NA	NA	SINE	Alu	Yb7	actaggataacttttcaaaacatgggacaataagacataagcaacaaaaagttaaaaagtcagagaattaagtgaaaatgtttttattagtttttttttg<br>cctatttgtttatgcaatcagtgttaagttgtcatcagcttaataataatgggttataagatacttgcaagcctcatgataacctcaaatcaaaaaacat<br>atatacaaaaataaaaagcaatacattaaaatataccaacagagaaaactaccttcactaaaggaagacaggaagcaaggaaagaagaaagagaagacca<br>gaaaacaaataacagaatggcagaagcaagtccttacctaatcaataatgacattgaatgtaaatggactaaaaactctcctatcaa<font color="green"><u>AAGACATAGAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGACATAGAGTA</u></font>actgagtggattaaaaaatcaagacccaatgatctgttgcctacaagagacacacttcacctataaagttacacac<br>agactgaaaataaaggaatgcaaaaagatattccatcccagtggaaacaaaaaaagagcaggagtagctatagttatatcagacaaaatagatttcaaga<br>caaaaactataagaagagacaaggtcattatataatgataaaggggtcaattcagcaaaaggatataataattataaatatatatgcatccaacactgaa<br>gcacccagatacataaaggaaatattattagaggtaaagagagagagagaccccaatacaatagtagctggagactccaacataccactgtcagcattgg<br>acagatctttc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ACBD6:NM:032360:6/8	
0	chr1	225762315	225762620	1001202	0	+	pAlu1-222169659; RIP_Alu_chr1_222_01	NA	NA	SINE	Alu	Yc1	ttgtgttaggtttcaactcgattccacaaatattgttcacatttataacacaggtcctggcatatagtaaaagtgggcgagaccagctcagttatataag<br>attgtgggccaggcgcggtggctcacacctgtaatcccagcacattgagaggctgaggtgagtggatcacctgaggtcaggagttcgagaccagcctggc<br>caacatggcaaaatcccatctctactaaaaataccaaaaattagccaggcatggtgcctcgtgcctgtagtcccagctacttgggaggctgagacatgag<br>attcgcttgaacctgggaggcagaggttgccgtgagccaacagtacgccactgcactccagcctgggtgacaaagtgagactctgtctccaa<font color="green"><u>AATATATA<br></u></font><font color="red">AAAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGT<br>AACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATATATA</u></font>tatataaaaaaaaaaaaagattgtgcattcagatacgaataataaacatattttctcaaataggaaagtgaacaataaatagcatg<br>tgctatatactgtgttaagcactagacgagctttttcctagtccatagcaccaacaccaccactctgaaatcacaacatcctacaaatgtagggttcact<br>ccagaatcctccgtgaccctcactgctccacacacacagtcaccaagccctgtcaattctatttccaaaagactcctacaatgcatcagtaccctttgtt<br>cacaatgctcaatgctcaaaagctttaatttgggccctccctagttcctcaactggcttatttcaaaaatctccttacctgtatctctcactgcaatctt<br>attctt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ENAH:NM:018212:1/14	
0	chr1	228572174	228572489	1001203	0	-	pAlu1-224957620; RIP_Alu_chr1_224_02	NA	NA	SINE	Alu	Ya5	cctatcttatctcttagcccagttgcccaaggtaccagtatccttatctgcaggtgagcatgaggacctctgtgttgaagacacatcaacctttggatac<br>agaatgcagagtctcaggagataggccaattatttgcattttgaatgctatctgtttctataccatatggtagtaaaaatttgcatggtatgattttaaa<br>aacttgaatttttaacttaatgttctatgttctgtagtaatctcattttcatgttaccaaaggaaacctgttatgaccagaataaattattttcccaaca<br>ttgaactaagaattcctagagctggggaaataaaggaatgtcctttgctgccagcctccttccttcctccttaggatacctctttaa<font color="green"><u>AATTAATTATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATTAATTATTAG</u></font>tttggttttcccatttaatagagaaattatttaggatgttttctaaaatgtccaagtagctagctataact<br>tgctgtttattctttgattgacagtgactaatgtcatttcacagtggccaggaaatgtgggctgtatgatctccactttgagaggattttgacccaatgc<br>ctgggtcatttatgtggctggcctctggatatctgaaagtaatatgaatccttcatttgctggtttcaaagtactatctacctatcttcctgtctatcac<br>ataaatgtttccagtgatgccatcaatagttacagaaattgattgatttttatatatctgacctattgatttctaaacacaatatattaaaatcttctac<br>tatgattaccaatgta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	228814815	228815141	1001204	0	-	pAlu1-225186851; RIP_Alu_chr1_225_01	NA	NA	SINE	Alu	Ya4b	tccttgaggatggatgatgcaccccttaccatcccattaaaacctaatcacccttaccccgatcaatgccagtatcccatcccaccgcatgctttaaaag<br>gattaaagcctgttatcacttatctgttgtagcatggccttttaaagcctataaactctccttacaattcccccattttacctgtccaaaaactggacaa<br>gccttacattttagttcaggatctgcgccttatcaacaaaattgtcttgcctatccaccccatggtgccaaacccatatattctcctatcctcaatacct<br>ccctccacaacccattattctgttctagataaacctagctgaccccataaatcctaaatcctttccacactcccctgtccattccttaaaa<font color="green"><u>AACAGCCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAGCCCT</u></font>aaaatctgctcccacactagttctccctaactcatcccaacctttttcattacacacagccgaa<br>gtgcagggctatgtggttggaattcttacacaagagccaggaccacgccctgtagcctttctgtccaaataacttgaccttactgttttagcctagccct<br>catgtctgcgtggggtggctgccactgccttaatacttttagagaccctcaaaatcacaaactatgctcaactcactctctacagttctcataacttcca<br>aaatctattttcttcctcacacctgatgcatatactttctgccctcctccactacctctcagcaagccaaactcattgccttaactcgagccctcactct<br>tgcaaaaggactacgtatcaatattta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	235547541	235547542	1001205	0	-	pAlu1-42180814; RIP_Alu_chr1_105_02	NA	NA	SINE	Alu	Yg6	acctctacgcaaataaactagaaaatctagaagaaatggataaattcctcaacacgtacactctcccaagactaaaccaggaagaaattgaatctctgaa<br>tagaccaataacaggatctgaaattgtggcaataatcagtaatttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaga<br>tacaaggaggaactggtaccattccttctgaaactattccaatcaataggaaaagagggaatcctccctaactcattttatgaggccagcatcatcctga<br>taccaaagccgggcagagacacaaccaaaaaagagaatttttagaccaatatccttgatgaacattgatgcaaaaatcctcaataa<font color="green"><u>AATACTGGCAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACAGGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATACTGGCAAACCG</u></font>gaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaat<br>atattcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattc<br>aacaactcttcatgctaaaaactctccatctggtatcctttctcttcagcctaacggtatcatctgacagttcttgtagtgtaggtttgcaggcaacaaa<br>ttctataggcctttgttcctctgaaaatatctttatttcatcctcagtatacttttttctgggtatggattcctgggtttgcagggtattcccacttgtc<br>cgagttttc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TBCE:NM:001079515:2/17	
0	chr1	62390603	62390938	1001206	0	+	pAlu1-61748210; RIP_Alu_chr1_062_02	NA	NA	SINE	Alu	Yd2	tggtttttgtgaaaaagagattcttaaaattattattaaaaggcttgtacatttaaagtagtataactttagtcaactattttctggaaactctgggaat<br>attacatttaaataatgctcacttatataaaccaatcagaaagagattctttattttgagagatttatatctaatttattaatatgctctgaaggtagga<br>aaatatttcacactcaaaatgaaaggtaaggacttttctttctccagtgcagatacacaatgtattctgcttctgtcctgcagctatagccatatgtcaa<br>atgtagacataggaatgtaaaaccctactggttttacgttaaagagctgttctttccagtaggacccaagacatgttcttgtacaaa<font color="green"><u>AAGACAGACAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACAGACAGGC</u></font>aaacaagaagactaaaaaatgcattctctgttgtctctcaatcaatcgaga<br>atagatctttatagaagcagcataatatagattctcatcccaacaaataactctaaatggtcagaccataaaaccaaacttcatttattcctactatcag<br>cgaggaattacaagtacacatcagaaccaaacttggtctcatatcagaaacaaaatcatagaactggaaataaaaatcagagaaactgtcaaaaaagcaa<br>agtttgttgccacttggaattaactgtgggtgccaaaaaatcatgtaaatgggcttaaacagctcatgaattgcatctctgaggcatcacaatttaattg<br>gttctggtaggtgagtctgcttgagcatctctgtgg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:INADL:NM:176877:26/43	
0	chr1	69807005	69807311	1001207	0	+	pAlu1-69191628; RIP_Alu_chr1_069_01	NA	NA	SINE	Alu	Ya5	ccaatgcccgtacttccattgtatctagggagtaactagcttgcttttgattttacaggctcgtaggcagaaggggcttgctttgtctcagatgagactt<br>cagactatggacttttgagttaatgctgaaatgaattaagattttgagggactgttgggaaggcatgattagttttgaaatgtgaggacatgagatttgg<br>gaggggccgggggcagaatcatatggtttggttgtgtccccatccaaatctcatcttgaattgtagctcccataattcccacatgtcatgggagacatct<br>ggtgggaagtaattgaatcacgggaatgggtctttcccttgctgttctcatgatagtgaataagtttcatgagatctgatggttttat<font color="green"><u>AAAGGGGAGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGGGGAGTTC</u></font>ccctgaacacactctcttgcctgacaccatgtaaaatgtgactttgttcctccttcaccttctgccataattgtgagacct<br>caccagccatgtggaattgtgagtcagttaaacctttttcctttataaattacccagtcttgaacatgtctttattagcagcgtgagaacagtctaatac<br>agttggtgtcatgcatggagctcatctgtgatcccctggacactgcaaaggaaataagactcattccagattccgagtattagtggaaagtagctcctaa<br>gacactaatagatttttttttcctctaaattctcagcaattgtctgccatggatgacacttgaagtttaaatgtttcacagtctgatgccaagtagagct<br>ggtaaag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	118091052	118091258	1001208	0	+	pAlu1-117238000; RIP_Alu_chr1_117_01	NA	NA	SINE	Alu	Ya5a2	agaccaacccctgcaccaaaaaaaaaaaaaagttataagagcaagacaaaagacaaaaataaatctctttgaagacattacatagctattaatagataca<br>gagtcagttagagttaggtggccagacttgagtggcgagaatatcagagcaaataaatacattttgagataaacccagaattctgcagggctttttcctt<br>gaggcatttggcaatttaaaagcagcacagggctgagaagctaggaagctgggcagcagcagacacttaaataaggctagaaagctgagcagagctttca<br>gcagtctaacaagcctaaggaaacaaaaattagagttcagggttcaccaagaaaaggccccagtaaacaatctagacctcccatt<font color="green"><u>AAGACACCCAGAAGC<br></u></font><font color="red">CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGACACCCAGAAGC</u></font>tatactctaagaggtaaggtaaaccagaaataaaaggtgttcacaaaagactaaaacctagtcctgaaccagtgtaat<br>cccaatgtgattaataggggttaatatgatctgctccgtctctacctccctaccagagagttatacagcagaagagagaattcatcaccaggaagacaga<br>ctaactgaaaatatccatcctaaagttcagggagaagggaaaaaaagagatggaaagtacagaaaagaccatgagacatatgtgatacagtgatgaggtc<br>taatatataacaatatgtaatagtctcagaaaaacaaaaagagaatggggcagaagcaatattttaagagctactaaccaagaattttctaaaactgtga<br>aaaaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	4305140	4305141	1001209	0	-	pAlu1-181289027; RIP_Alu_chr1_004_01	NA	NA	SINE	Alu	Yc1	taggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcac<br>agcagaagaaagtaccaccagagtgaacaggcaacctacaaaatgggagaaaattttcacctactcatctgacaaagagctaatatccagaatccacaat<br>gaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaagggaagacattcatgcagcca<br>aaaaacacatgaaaaaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtt<font color="green"><u>AGAATGGCAATCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAATGGCAATCAT</u></font>taaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttactttgttggtgggactgtaa<br>actagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatataccca<br>aaggactataaatcatgctgctataaagacacatgcacacatatgtttattgtggcactattcacaatagcaaagtcttggaaccaacccaaatgtccaa<br>caatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgtagccataaaaaatgatgagttcatgtcctttgtagggacatggat<br>gaaattgg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	2864017	2864321	1001210	0	+	pAlu20-2811916; RIP_Alu_chr20_002_02	NA	NA	SINE	Alu	Y	aacactttttttttttttttttttttttgagacaggttctcactctgtatgtagcccaggctggagcgcagtggcatgatcatggctcattgcagccttg<br>acctcctgggctcgggtgatcctcccacctcagcctcctgagtagctgggactacaggcatgcaccaccatgcccagctaattttgcaaccagtaggaat<br>aatgcaaatagtacaaaatctgaaaaatacctaaatctgaaacacttctggtcccaagcatttcagataaggaatactcaacctgaacctagcaaatatc<br>atttgaaaaaataatatcttaatctgtctcttcaagtaaaagtattatttaaatagtgagtgaaaaaggaactacttcttttcttag<font color="green"><u>AAAGAAATGTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAA</u></font>tgcaatggtagagcgttttcctcgttggaattttttttacatgtaatcattataagctataacttacatattataaaattctcctttt<br>taaaatgtacagttctgtggttttttgtatatgcatagagttgtgcagcttttgccactgtctagtttaagaacatttcatcaccccaaaagagaccctg<br>cacccattagcctcacttcccattctctcctccctccagtccctggcaactactaatcttcctgtttctttggatttgcctattctggacatttcatata<br>aatgaaatcatacaatatgtgaccttttgtagctggcttcttttacttagcataatgtttctggggttcattcatgttgtatcatgtatcagtacttca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTPRA:NM:080840:1/23	
0	chr20	17103451	17103774	1001211	0	-	pAlu20-17051362; RIP_Alu_chr20_017_01	NA	NA	SINE	Alu	Ya5	ggctgcagtgagctatggtcacaccactgcactgtagcctaggtgacaaagtgagacttgtctatttaaagaaagagagatgaagaatcttggaaaaagg<br>aatcaatgaaaatggaataaaatatttcatttttattattctaaaatgtaactgtataatttaataatagtaagaatgtactgggtaattataacataga<br>ataaaagaaattaaatgacagcaacatcacaagggatgggagggagaaattgggaatattttttcaatgtacctgcaccactcataaagcagaagcatgt<br>aatttgaaggtggaatcagattagctaaaaatgtatattgtaagctttagggcaaccacagttttttttttttttttttttttta<font color="green"><u>AAGAAGTGAATAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTGAATAAGAG</u></font>gaggagataaaatggaacaatacagagacttaattaaaacaacggaaagcataaaacaac<br>tacaaacatggttgatgttaaagcaaatatatgaataatcccttggaatgagtagtctaaatataccagctaaaagacagagattgtcagataaaaatgc<br>aagacccaagtatatgttgtttacataaaattcactttaaatataaagactccgataagctaaaattaaagaaatggacaatggagaaagagaaaccata<br>ctaatcgaaagaaaactggaatgaaaatattaacttcagccaaagcagacttcaaaacaaggagaattgtcagagataaagagcagcactgggtaattat<br>gaatgggtaaatttttgaagaagat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	35608824	35609125	1001212	0	+	pAlu20-36247152; RIP_Alu_chr20_035_02	NA	NA	SINE	Alu	Ya1	actctgttgcccaggccggagtgcagtggcactatcttggctcactgcaacctccgcctccgaggttcaaggaattctgagtcagcctgccgagtagctg<br>ggattataggtgtgcgacaccatgcccggctaatttttgtatttttagtaagatggggtttcaccatgttggccaggctggtctggaagtcctgacttca<br>agtgatccacacacctcagcctctcaaagtgctgggattacaggcgtgagccaccctgcctggccgcaagcatactttttataataattatatcttacat<br>gtattcagcattttctatgtgccaggctcaattctcataacactctataataaagccattatttcaattttacagatgaagaaat<font color="green"><u>TAAAGCTCAAGAGTT<br></u></font><font color="red">GGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACGACGTCAGCAGATCGAGACCATCCTGGGTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAACCGGGCGTGGTGGTGAGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCATGAGAATGGC<br>GTGAACCCAGGAGGCGGAGCTTGCAGTGATCCCAGATCACGCCACTGTACTCCAGCCTGGGCGACAGGCGAAACTCAGTCTCAAAATAAATAAATAAATA<br>AA</font><font color="green"><u>TAAAGCTCAAGAGTT</u></font>tttaagtaacttgcccaagttcacattaggattcaaagccaagcgctgtggtttcacaggcccactttttttttttttttttt<br>gagacagcatttcactctggcacccaggctggtgtgcagtagtgcaatcatagctcattgcagcctcaacctcctgggctcaagtgatcctcccacctca<br>gcctcctgagtagctgggaccacaggcatgcaccgccacctgtctaattttattttttgtagagacagggtctccttatgtagcccaggctggtctccaa<br>actcctgggatcaacgaatcctcctacctcggattctcaaagtgctgggattacaggcgtgaaccattgcacacggcctacactgtgtcttttgataaca<br>gt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	39590543	39590872	1001213	0	-	pAlu21-38510832; RIP_Alu_chr21_038_02	NA	NA	SINE	Alu	Ya5	aaatttcacacagctcaagtccgtcctcaaactctcctttaaataataaacgacttcctcctttcctatctcaggagcgctgggcccttccctcggggat<br>ggttatacttacgccatctgctggttgttaatgggactgcacttgctgctgtaagccgcagtaccatggttctgtgcccaagtcctcctagaaaacggag<br>gccttggtattggtggactaattgaagaaatacagatatgccattcatcatttagaacaccaagagggccacctgaggtgttaactttacttttaggagt<br>atttcttagaagaggatatatttcatattttggctctccaattctttatgctgaatctaaggaaatattcttgagttcagcttc<font color="green"><u>AAAAACAGCCCAGGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACAGCCCAGGTG</u></font>aggttataaatgctgatgtggaaatgtcagagtatgtggtcagtgtgacaacaa<br>tctggataacctgaaaatgttcatgctgcaaatgtttagaaaggctgtatagcattaaaaaaaaatgctttcaatcgaggtgccagaaacatgtgaccta<br>atgcttgcaggtgggaatggagtggattttggctttggaaacatataagactaatttttatttctttttttatagagacagggtctctccctgtttccca<br>ggctgaatcatagctcattgcagcctcaaactcctgagctcaataaatactcctgcctcggcctccagagtagctgagactacaggcatatgccactgtg<br>ctcagctaatttctttaaattttttgtagc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	14416320	14416633	1001214	0	-	pAlu21-13338095; RIP_Alu_chr21_013_02	NA	NA	SINE	Alu	Sc	atgttcaagaaatgttataaaactgtgaattaaatgttcattattcaagaaatgaattgaactttacctaatccttatttgacagtatatttttgtggca<br>aacattaacatttgacaaattagaatttcagggatgcagttttgaaagcttccccccaaaaatggaggtttcctctgggtgatacaaactcacttgattc<br>tcttctatcaatgatcccaagattccaaatgccaatgtcaggcactcctgctctaaatgggtcactaaggaagtggctgtaaattaaaagagattggctt<br>caaataaactttgattgcatattcttaaatggtccatggggtttatcctattaccagacaataggattttatctcagctatt<font color="green"><u>AGAAATTCAGTATAAAAG<br></u></font><font color="red">GCCAGGCAAAGTGGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGCGGGCAGATCACAAGGTCAGGAGATTGAGACCATCGTGGTCAACATGGT<br>GAAACCCCATCTCTGCTAAAAATACAAAAAATTTAGCTAGGCGTGGTGGCACATGCCTGCGTCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATTGCTTG<br>AACCAGGGAGGTAAAGATTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGTGACAGAGCAAGGCTCTGTCTCAAAAAAAAAAAAAAAAAGAGA<br>AAGAAAAAAAGAAA</font><font color="green"><u>AGAAATTCAGTATAAAAG</u></font>tttattctctattagaatgatactcctaggatcctaatgcatatctacttcttaaaatgcaataatcc<br>atttttattctggtttctattgtaattgatactattttttggcaaaatatcagaagtatgaataaaatggcttattaatgaaagttctaactcatgtatg<br>tggcttagcaaaatagaagccactaaatcacttgaattttaagggacaattctgtggagaaagatataatattttttctgcaatatgcataacctattca<br>aatataaccatgattaatctaaaaaggcttaaaggccttctaatagaagatgattatttatggtttatatgagaaaaatcatcatttataaaatattcta<br>aattctagaagaca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C21orf99:NR:026916:3/12	
0	chr22	17034649	17034954	1001215	0	-	pAlu22-15409101; RIP_Alu_chr22_015_01	NA	NA	SINE	Alu	Sx	atgcccagtcttggaattgctggcgcaaatggtggagcagtttagattcaggaggtacatgtacaggtttcttacatgggtacgatgtgtgatgctgagg<br>tctagggtatgagtgatcccatcacccaggtagtgagcataataccccacagttggttttttcaactcttgtccttctaccttcctctctccccctaact<br>agaacacagtatctgttcccttctctgtgtctacgtatacacaacatttagctcccacttataagtgagaacacacagcattctgttaatttacttaaga<br>taatggcctccacactgttcacaatagcaaagatgtggaaccaacccaaatgctcatcagtgatagactggataaagaaaatgt<font color="green"><u>AGCACATAGACACTGT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTAGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAGCA<br>TGGCGAAACCCCGTCTCTACTAAAAATACAAAAACTGGCCGGGCATGGTCGTGCATGGCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGC<br>TCCAACCCAGGAGACAGAGATTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCGGTCTCAAAAAAACAAAACAAAC<br>AAACAA</font><font color="green"><u>AGCACATAGACACTGT</u></font>ggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccctcatgtt<br>cagcaaattgacacaggaacataaaaccaaacactgcatgttctcattcataagtgggaagtgaacaatgagaacacatcgacccagagaggggaacatc<br>acacactggggcctgttgcaggggtgggggactgggggagggacagcattatgagaaatacctaatgtagatgacgggttgatgggtgcagcaaaccgct<br>atggcacatgtatatctatgtaacaaccctgcacattctgcacatataccccagaacttaaagtagaatagaaaaaataaaaaataataaaaataattaa<br>aaaaga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr22	42905973	42906268	1001216	0	-	pAlu22-41136811; RIP_Alu_chr22_041_02	NA	NA	SINE	Alu	Yb3a1	tctctcttggatcaaaatatccgtggactgctctggaaagtgaggagttgggggttgttggggttcatcttagaaccgcctcccagcggtgcccccatcc<br>tgccctgggttcaggcctctgaggagaaaccaaagcctgggctaccccaactcccacagctgggtcccttgaccctgggttggatttgaggctcagttaa<br>tctcagctcacgctcagctggcacaagccaggcgcaagcaagtgctgaaggcacagccttgctggggcgcagggagttcaggacttggtcacagtcagcc<br>ctgaacagcagagctgggatctgaacaggcgctggagcccacacttgctctgagagagaatttatgtcttcacaatcctcccattga<font color="green"><u>AAGTCTACAATCC<br></u></font><font color="red">TGGCCGGGTATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCAGGAGATGAGACCATCCTGGCTAACATGG<br>TGAAACCCTGTCTGTACTAAAAATACAAAAATTAGCCGGGCTTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGACCTTGCAGTGAGCTGAGATTGCACCACTACACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGT<br>CTACAATCC</u></font>cgtggtttttaatacattgagttgtgagaccatcgtcacaattacattttcatcacccccaaagaaatcgcaaacctctgagcttacacac<br>acacacacacaccccacccccccacccccaacaggcttccggtcctgagcaaccatgacctggctttgtctctgccgtgtgtcctatttggacttgaacg<br>tgaatgcagccatacaacacgtagacggttgtgtctgacttcatccacttagtgcgatgttttcaaggctcatccatgctggagcccatgtcagtgcttc<br>gtttctttttatggcttaaaaatcgtctatggtgggccacgcacggtggctctcgcctgtaatcccaacactgggaggccgaggcaggcggatcat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SERHL:NR:027786:8/11	
0	chr2	20666679	20666972	1001217	0	+	pAlu2-20634265; RIP_Alu_chr2_020_01	NA	NA	SINE	Alu	Ya4b	ggcagtgtcctaggggaggaccagctgctgaatggagacttggctgttcctgtctcactctgcaggtctttttcccaagggactgagaaatagatgcctg<br>aactggcttgacagtgccaaatgccaagttctgaggtgtctgggccagaggttgggtctgtggcctggtgatctccaggcctggggaggttgcactctgg<br>cagtccatggtagaaggtgaggtcaagtcactcacatgctcaccttgtttggaagcatcaagtctgatttcagagctcaggctgaaaacaagcatctaga<br>acggatccctgaaccggcttctgactcatcctcttcaaattacgctaagatttgtcaggcccctccttcatctttaggccaagtgtt<font color="green"><u>AAAATGCCATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAATG<br>CCATGTG</u></font>agtccaaggaggtgggctcgagctgcgtctgcctttgcttcctggagggcggaggactagcccagcagatcctggtggtgcagaaattggaga<br>gcttggggccactgaaaaagggttcaggccccaatgaaaggacatttttggctccttgtcaaggacagacaggctgcagatctacacacgggatttgatc<br>cagcccccatctagatccctgtgccctggcaattagtctggttcctgctacctgtcatcagtcctaccacctgcctgggtgtgtgtagtgggtgcagggt<br>gctaggatttcatgtgtacactgggtaggcaggtttgtggtgggagcagcaggatgggctcagagctcagcactgagggaatgtgtgtgctctt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	43658983	43659294	1001218	0	-	pAlu2-43616594; RIP_Alu_chr2_043_01	NA	NA	SINE	Alu	Ya5	ggatattaatccaggagaaatgaaaacgtgtccttaaaaagtcttatattagaattttatagcagctttattcataatagtaaaaaaaaaaaaaaggtaa<br>agaacccatgcctgtcaagaggagaattaataaacaaacttacagattcatataatggaatactactcaacagaaaaagaaccagactattgatatattg<br>aataacatggataaatttcataaactctgtgctgagtgaaaaaagcaagccaaaaaaacgtattattgctgggcacagtggctcacgcctgtaatcccag<br>aactttgggaggctgaggtgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctccaataa<font color="green"><u>AAGTACAAAAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGCGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCATTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGTACAAAAAATT</u></font>atccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgc<br>gaggcggagcttgcagtgagccgagatcccgccactgcattccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaa<br>aaaaaaaaaaaaagtacaaaaaattatccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccagg<br>agatggaggttgcagtgagccgagatcgcaccactgcactccagcctgggcaacagagtgagactccgtctcaaaaaaacaaacaaacaaaaatgtatta<br>ttacatttatat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:THADA:NM:022065:26/38	
0	chr2	49612899	49613205	1001219	0	-	pAlu2-49570505; RIP_Alu_chr2_049_01	NA	NA	SINE	Alu	Ya5	gaatcaacctaagtgtctattaatgggtgaatggataaagaaaacatggtatatatacacagtggaatactgttcatccataaaaagaatgaaattctgt<br>catttttgacaatgtggatgaatatggagtacaccatgttaagcgaaaaaagccagacacagaaagacaaatactgcatgatctcacttatatgtagaat<br>ctagaaaagaagaaaaaagaaaaagttgatatcatagaaacagatagtagaacagtggttaccagaggtggggaagagaggggagagaggaagacaggga<br>aagctggttcaacagctacaaagttataattagattggaggaataatttctagtgttttacttcacagtagggttgctatggtt<font color="green"><u>AAGAGTAAAAATATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAGTAAAAATATTG</u></font>tatattaaaaaatagctaaaagagaggcttctgaaggttctcaccacaaataaataaataatgcatgaagtgataaa<br>tacacaaactaccctgattcgattattacacaacataggtatgtattgaaacatcaagaacaacaaacatatcttataaatatgtaaaattacaatgtgt<br>caaacaaatcaatatttttttataaaaaggctaatgactgcattggaatgaacaagcaagaaaatagtaggagatgatatctcagcagtgggtaggacct<br>acatcaactagatcatataggatcttgagggtcatagaagtaatttgtattctattctatttacaatgaaaaatcatttaaggtttttaagcagaggagg<br>gtcatga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	82340459	82340765	1001220	0	-	pAlu2-82298076; RIP_Alu_chr2_082_01	NA	NA	SINE	Alu	Ya5	aaggtggattctgtttttcatctagttaaattcccagtgttactccctactggtgtttccactctgaagctcacataattatagtgaacatgaattcctt<br>cttattggaagaatttaactcttttatcttattatgtgaaacaaagcttagtaagagaaaaaataaggcagtatatcctaacagatatatcaagcgtaaa<br>ctccccaaaagagtgccggggggaaaaagcactattaatcaagcaaagctaatagtgttagattttctgcagaaatgagaataccatctcaacaaactct<br>tagtagtgtctcaaaagtgaaaaaattagaggaagattttaataggcagaacagacaatagtttatggggctcagagaatagttaaa<font color="green"><u>AACTGTTAAAATA<br></u></font><font color="red">GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AACTGTTAAAATA</u></font>tgattaagaatttcaaaatggtgacagcataacattaagccacctcatggctatacaggtcacatgcactgtgaagccag<br>cctgttaacagagttttagggcctgagctgagaatttttaatgtagtttgtgaaagtagaaaactggctaggattaagcacaatgtatatcatgatattt<br>ctggattagtggacagagtaatctgaggatcttgaagtgagctttgatgaacaatctattagtgttgaaaagtaaggtgttttacttggtttccagcctg<br>aacttcctggatcaaaattgctacattaagtacctatgttatttttgcttgttttcagtattatttagcatagaaggaggaaagtattcctggccacaga<br>attacta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	85519119	85519442	1001221	0	-	pAlu2-85476742; RIP_Alu_chr2_085_02	NA	NA	SINE	Alu	Ya4	ctgtggttccagctacttgggaggctgaggtgggaggatcacttgagcccaggaggtggaggttgaagtgagccaagattgtgccactgcactccagcct<br>gggtgacagagcaagaccctgtcttaaaaaacaaaaagagagaaatagctaacttaagacataaagtctacaaaaatattttttgagaaatacagaaaag<br>tataaagaatgataccacacccaaaacctgccatgtgggattgtttttatagcttttaaattttgttctttttttcttaaataaaacatcacagaaagtt<br>aaatcctcttaaacactccaccagtcttatgctcctccccacttcccaaaggcagctaccattgaaatgttcccattctcccttaaa<font color="green"><u>AATACATATGACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATACATATGACC</u></font>agtaaactcagcactttgggaggctgagacagaaggatcacttgagcctgggaggtcaagacc<br>agcttgggccatatagtggaaccccatctctacaacaaataataaaaatagctggatgtggtggtgcacacctgtagtcctagctacttgggaggctgag<br>gagggaggaatgcttgagtttaggctgcagtgagctatgatcatgccactgcactacagcctaggtgacagagtgagatcctgtctctcaacaaagcaca<br>aaaaaccaaaatccgggaggctgagacaggagaatctcttgaacccaggaggtggaggttgcagtgagctgagatcatgtgccattgcactcctgcttgg<br>gtgacaagagtgaaactccgtcct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TCF7L1:NM:031283:4/12	
0	chr2	91689543	91689850	1001222	0	-	pAlu2-91157380; RIP_Alu_chr2_091_01	NA	NA	SINE	Alu	Yd2	cactaggtcaggagtttgagaacagtctgaccaagtggtaaaaccctgtctctactaaaaatacaaaaattagctgggcatagtggtgcgcacctgtaat<br>cccagctactcaggaggctgaggtaggagaattacttcgaccccgggaggctgaagttgcagtgagccgaaatcgcaccactgtactacagcctgggcga<br>cagagtgagaatccgtctcaaaagaaaaaaaaaagggtggtggggctttaataaattaagtggtacattttaaatattttaattgtttattagatattac<br>gtatgcagataaacctgtttaaatatagaagatttatattcctatttacatatatccttttgacaaattagaattgaaaataatataaa<font color="green"><u>AATAAATTTTC<br></u></font><font color="red">AGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGGGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCACGGTAAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCTGGGTGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAAG<br>CGGAGCTTGCAGTGAGTTGAGATGGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAATAAATATATAAAATAAAAAATTA<br>AATAAAAA</font><font color="green"><u>AATAAATTTTC</u></font>tttctgtcatgcagacttaaatagtaaaatatcttccttctattatttttatcttttttgtttatgatggttaggaagtga<br>atatctaattttctatactgtgaaaaatacacataaagtatcatggaagttcaacattcattttccttgaaaataattccaaagttttcttctccagaaa<br>tatatcctgttatcattaagtttagttgtactgataaatggcagttgatgatttgtaagtttttaaacatatttattcataacacttatttttttttctt<br>tttgagacggagtctcactctgttgcccaggctggagtgcagtggtgtggtctcggctcactgcaacctccacctcctgggttcaagcagttctctgctt<br>cagcctct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	101975215	101975536	1001223	0	+	pAlu2-101579686; RIP_Alu_chr2_101_01	NA	NA	SINE	Alu	Ya5	caatcagtccccaaggtttatggattctttatcccaatatctgattataaacttttaaatatcatgctgggacattttctcaaaagcttgccttgggggt<br>aaaaaaatactaccacatgggaaaaaaaagagcctgttgcatagaattgtttatgatggcaaaaattggaagtaaccaaaaagcttagcagtggggaaat<br>acaaataaattaagttttatcaatactataacatacagcctttaaaatagatgagatagagctataggtgtccatgacaaagatataagtaaaactgtta<br>caagcagtgaatctgtatggatctgtagcaacctcaattcctgcctcctcagaagaaagaattcagctgaggggggcataaggcagagt<font color="green"><u>GAGAACTGAGG<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAGA</font><font color="green"><u>GAGAACTGAGG</u></font>caagttttagagcaggagtgagagtttattaaaaagttttagggcaggaatgaaaggaagtaaagta<br>cacttggaagagggggccaagcgggcaacttgagagatcaagtgcatgctttgacctttgacctagggttttatatgttggcacacttctggggccttgc<br>atcccttctctctgattcttcccttggggtgggctgtctgcatgtgcagtggcctgccagctcttggaggtgagcatgcacagtgcatttatgggacttg<br>tacacatgctcacttgagatgttcttcctttaccagtcaagtcttcgtataaggtcacataccagttaaactccgccagttttcgtcttggtgcacacat<br>gtgagcccacttacccggctcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CREG2:NM:153836:2/4	
0	chr2	102097854	102098165	1001224	0	-	pAlu2-101702325; RIP_Alu_chr2_101_02	NA	NA	SINE	Alu	Yc1	cacgcccagctaattttttgtgtttttagtagagaaggggcttcactatgttggccaggctagtctcgagctcctgacctcaggcggtccacccgcctca<br>gcctcccaaagtgctgggattacaggcgtgaaccaccatgcccagctcagcttgctttcttttagttctcacagctacactctgcaggaggcactttaca<br>atccaggaaacggcccctcagaggtcccccaggcagaacggttaaatccgtggccctatgtgctctgtcactcattggctacacaaccttgtgcaaactc<br>acttcaagtgtcttcaattccctgcaagtctccttttcctccctgtgaaatgagtccactctactggattcacgaactcacgcat<font color="green"><u>AAGATCTTAAGCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGATCTTAAGCAGG</u></font>tactgattggttcttctgcatatgctgggtactagggctggaggggtctaagttttggtctgatcttagactt<br>agcccactgtcacggactcagtcaggcctctgagatcatgcctagtctcctcaggtaaacatgacttatctctcagtttattttcttctctggctttctc<br>caagatggccccagggtctatggggaagaggggtggctcacctggtgggaggatgctgtaactcatggctcaagccagagcattcttcacagtgggaaag<br>agagctagcagcagcagctaaaagtggcaggcaggccccacccatacgggtccctcctcatcgcaggaccatggactctaaggcagtgcccttgtcctct<br>gggtgctagtca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	113616061	113616367	1001225	0	+	pAlu2-113522775; RIP_Alu_chr2_113_02	NA	NA	SINE	Alu	Yg6	ttcaatgctatccccatcaagctaccattgactttcttcacagaattagaaaaaactaatagccaagacaatcctaagcaaaaagaacaaagctggaggc<br>attgtgctacctgacttcaaactatactacaaggctgcagtaaccaaaacagcatggtactggtaccaaaacagatatatagaccaaaagaacagaacag<br>aggcctcagatataacaccacacatctacaaccatctgatctttgacaaacctaacaaaaataagcaatggggaaaataattccctatttaataaatgat<br>gttgggaaaactggttagccatatgctgaaaactgaaactggaccccttccttacaacttatacaaaaatcaactcaagatggattaaa<font color="green"><u>GATTTAAACAT<br></u></font><font color="red">GGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGTGGATCATGAGGTCAGGAGATGGAGACCATCCTGACTAACACAG<br>TGAAACCCTGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGATG<br>TGAAACCAGGAGGTGGAGCTTGCAGGGAGTGGAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCCATCTCAAAAAAAAAAAAAAAAAA<br>AAAGAAG</font><font color="green"><u>GATTTAAACAT</u></font>aagacctaaaaccataaaaaccatagaagaaaacctaggcaataccattcaggacataggcatgagcaaagacttcatgatt<br>agaacaccaaaagcaattgcaacaaaagccaattgacaaatgggatctaattaaactgaagagcttctgcacagcaaaagaaactattgtcagagtgaac<br>aggcaacctacagaataggagaaaattttttcaatctatccatctgacaaagggctaatatccagaatctacaaggaatttaaacaaatttgcaagaaaa<br>aaaaacccatcaaaaagtgggcaaaagatatgaacagacacatctcagaagaagacatttatgtggccaacaaacatgaaaaaaagctcatcatcactgg<br>tcattag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	117893064	117893389	1001226	0	+	pAlu2-117799777; RIP_Alu_chr2_117_01	NA	NA	SINE	Alu	Yb7	tacagaagcgtgtacaccatttcaaggttacagaaataatgcgggttggattctgctaacacaggttatgggattgggaaaaagagaaattctattgagg<br>ggcaataaatgattgctggggagaatgattggatcttggaacagagattaacctgttagtagtttctttggaatttaaatgctccttggagatgtctatg<br>aaaagagttgaactctaaaatatgtgaagagatttattctgagccaaatatgagtgaccatggcctgtgatacagccctcaggaagtcctgagaacatgt<br>gcccaaggtggtcagggcacaggttagttttatacattttagagaccatgagacatcaatcaaatacattaaagaaatacattgatt<font color="green"><u>AAGAAATACATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAATAAAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATACATCC</u></font>atcaaatacatttaagaaacacattgatttagaaaagcagaacaactcaaactggaggggc<br>tttcaggctacaggtgaatttaagtattttctggttgacaattggttgattttgtctaaagacctgatatcaatagaacgggaatgttcaggttaaggta<br>aagattgtagagaccacagttcttttgaagtcttatagtggctgcccttacagaagataggtgacaaatgtttcctattcagatcttacctgtttaggat<br>tgggagggtctggaagaaaaagatctagttatgttagtggacatcctttacagatgtaaattttccccccacaaagaacagctttgcagggccatttcaa<br>aatatggcaaataaacatattttggg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	128871273	128871569	1001227	0	+	pAlu2-128776108; RIP_Alu_chr2_128_01	NA	NA	SINE	Alu	Yf1	tgcctagcatgactttagaacataagctaataatctccctctttataaaaaaatctagttatttgaatcccttttttgacaaatccagtagtttcattga<br>gtctattatttgcacatatgatgtgctttgcttggctttctgaagaaatataaaacatgctaaaaaagtagctcgataaagtttacattttatttcaaaa<br>tgaaccatgtaaataatcttttctgattttaatatggtcatcatactatggaactgattgttgaattcagtttcctttccaaccttttttcttctgtttt<br>ctctttgccacctttttatttggtggaagggggaggattttctaaacaggcgattcataggtagacttgatgtaatattaagctttt<font color="green"><u>AAGACTCTGTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>ACTCTGTGTA</u></font>atatttagtcatttaaaatatttatatgtaaaggttgttagccctttaaagtttctatgtcataataagctcagtactaagttcatgcaa<br>aaaaaataaaattttatttattgatttatttatttttgagacagagtctcgctctgtcgcccaggctggagcacagtggcgcgatttcagctcactgcaa<br>cctccgcctcctgagttcaagtgactctcctgcctcagcctcccgagtagctgggattacaggcactcaccatcatgccggctaattttttgtattttta<br>gtagagagggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatctgaccgcctcagcctcccaaagtgctgggattacag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:UGGT1:NM:020120:6/41	
0	chr2	158719101	158719396	1001228	0	+	pAlu2-158683025; RIP_Alu_chr2_158_01	NA	NA	SINE	Alu	Ya5	atatacgttaactacaaatatgaaagtgtactatgtttcatgtttatgtttatggaactgtactacagaactgtacataatttatatgaaaggaattata<br>ctatgttttgagtgtcctgcttttttcatgtaatattttgtgtactctctatagtcattcattcattgcaacaatttctgtgtgcctcctatgcataaga<br>cagcatactaggcacaggataaacatatacacatacacacacacacacacacacacacacacacacacacagagtacaaaacagacataccttgtattta<br>ctaatatatatataaggtagtatctgtaagatacggaaaataattaaggctcaaactagatggaatagccaacaaaagcctcttt<font color="green"><u>GAAAAGGTAACTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>GAAA<br>AGGTAACTACT</u></font>tttaaaatgagatctgtctctgaaaattcatcaaaaatagtatttttagtgattacataaaattccattctatgaatatatataaacct<br>aaccgctgctgtagaacatttacttttttttttttttttttttttttttttttgagacagtctcactctgtcacccaggctggaatgcggtggtgcgatc<br>tcggctcactgcaacctccatctcccaggtactcctgcctcagcctcccaagtagctgggattacaggtgtgcaccaccatacttggctaatttttatat<br>ttttagtagtgatgaggtttcaccatgatggccaggttggtctcgaattcctgacctcaggtgatctggcctcctctgcctcccaaagggttggga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ACVR1:NM:001105:1/11	
0	chr2	181925838	181926149	1001229	0	-	pAlu2-181889756; RIP_Alu_chr2_181_01	NA	NA	SINE	Alu	Yb7	tgacttatcaaatatttagaagtaagtcaacttaaaaaaaaaaaaaaggtcacataacgaaacaaaatgtgtgaaatttcaggtctaaacatcactttat<br>caagtcagctacccaagtttctgaagttcacatgtggcaggcattttttaaagttatgaattatacacaaatgattttatctgaggttatataatcataa<br>tctagttcaattctcattggctatcattttaatatccattactactacactttatataactaattaattaaaaaaggaagggagaacaagaagccttcta<br>ttattaaagtagttgcctaaaagcatacagcagcatggaaggagcaggaaaaggaggcactggtttcagacacattgctttactcttgtt<font color="green"><u>AGAAGTGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAGTGGTC</u></font>tgtgcacctaaatacttttaaaagtagagattccattaatgatggtgacaaaataattatagagtggtatgccattaa<br>caaattaaatgaaggtattgagaaacttttggcctagtctacttcaaatggcattggtaatttcctcacaaactgttttatggggatctttctatgaata<br>acatttacctctcaatctacatttaaagctaactaaaaaaaaaaaaaaaaaaaaaaaaaaagcactcgtttttgtagtcttattgtacatgttaataaag<br>atttgcttaccagggttgcagtctgtcaaaagggaacaaatagacagcaaaacctttgaaatagtcaaagcgggactccagttgtctttaaggatgtcca<br>gacagatgactc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:UBE2E3:NM:182678:6/7	
0	chr2	182565256	182565568	1001230	0	-	pAlu2-182529181; RIP_Alu_chr2_182_02	NA	NA	SINE	Alu	Yc1	ggtccacttgtcacctggatgtgcacacaaccatcaaacttagcataaacagtctttagcccaacaaatttctcattaaccttgctctactcccagactt<br>ccctgtaccacttacctaattgcttaaatcagaaaccagagaaaacccttgactactcatttaacccaatatcaaatagttatgtgcagttacaagttat<br>ggacaactcaatttacagtagcttaaatgttgttgttttctttttctcacataagtaggttcaaggcagattgctgtggtgttgattcaataacctaaaa<br>atgtccagcaatatttctacaattcgtgtggtattccctgatggaattgagaaagaactgcatctccttcatgttcaaaagaaac<font color="green"><u>AGAAGTAGAAAGAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGGCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGAAGTAGAAAGAAG</u></font>cagtcttgtgagtctcttttacaaggaaacagcttttcctgaagagcctcctagtagacttctctttacagt<br>tcactgtgcagaataggccggatcactaccccagctataagggagactgagaaaacagggaacaggattgttataattgaactattccaaacaagatcca<br>tttattcaagatgaacacattggctcctcagaaagccagagttcctttagcaggaaaaaagtgaaaatacatattgactaaataacttgaaatatctgca<br>acaaatccccgcccccacctttctgccaaccaaatatcaagttgggtcttatcctttaaatatcttgaaaatatgtctattccttcaccactgcccccat<br>tttaatgtaaact	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	192559414	192559731	1001231	0	+	pAlu2-192523336; RIP_Alu_chr2_192_01	NA	NA	SINE	Alu	Ya5	ctctccctaaccaccacacaaacagtaaaaaaccatgggtgaattctattaagaatggagaaaattttccaaaaatggctcaaagtccagaagcattaaa<br>ggaaagattgatcaatttgactacatttacatgttaaaaaataaaatgacaactgggaaaaacatttgtaacatcacaaagggctaatattcctaacata<br>aaaagaacttgtataaatagagaagacaaaacacactatggaaaagtgggcaaaagatatggacagttcacagaaaaaaagttcaaatggcccttaagta<br>tataaaaagatgctcaacttcactcataatgaaagatgtaaattaaaataccaccaagataacattcttcacttttagattggaaaaaat<font color="green"><u>ATGAAAGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATGAAAGTTT</u></font>gaaaacacacttgcttggccaggtgtggtggctcatgcctgtaatcccagcgctttgagaggccaaggtggg<br>tggatcacctgaggtcaggcattcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatttactgggcataatggtgcgca<br>cctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagattgcacctctgcactccaacc<br>tgggcgacgagagtgtaactctgtctcaaaaaagaaaatattctcttggtaacactattggaataggaacattcactgatggaggaaatgcaaaactgta<br>taatctctgttatagggg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	192562206	192562529	1001232	0	+	pAlu2-192526128; RIP_Alu_chr2_192_02	NA	NA	SINE	Alu	Ya4	taaaaacacagtataaaagtcaaaaaatggtacacttgcaagggcacttaccaggaatggagcttagaggttggaagttgctctgtatgagtcagtgagt<br>gagtggtgagtgaatgtggaggcctaggaaattattctacactactgtagaatttatgaacatttgggctacactaaatttataaaaaacattttcttct<br>tcaataatgagttagctcactgtaacttactttttaaactttttaaatgttttttaagtttttaactcttgtaataacacttagcttaaaacacacattg<br>tacagctgtacaaaaatattttctttatgtcattctataagctttttaaaatattttcaaatgtatttttttttttaaagcttaaaaaa<font color="green"><u>AACATGTAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACATGTAAGA</u></font>cacccacatattagcctagacctacacagggtcaggatcattaatatcagtgtcttccatctcca<br>catcttgtcccactggaaggtcttgaggggcaataacatgtatggagctgtcatttcctatgataacaatgccttctggaaggcttcctgaaggacctgc<br>ctgaggctctttttgaggcagtgtcactcttttcagaaatatgtccatggtggtttactcaatttgcttcttttttattcatagatttgcatatgtaatg<br>cattgcgctataccattaagacagctatgatgtcactgcagttacagtgtcactaggtgatagaaattgtccagctccattacaaccttatggaaccact<br>ggtgcatacgtggttcattgtggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	196031321	196031614	1001233	0	-	pAlu2-195995238; RIP_Alu_chr2_195_02	NA	NA	SINE	Alu	Ye5	gtttcatctacattaaacatctgttgtttagtgcagccatcttcatcaatgatcttagtgaggtcttctagacaatttgctgcagcttctacatcagcac<br>ttgctccttcaccttgcatttttatgttatggaggtgacctctttccttaactcttatgagccaacctctattagctttcaacttttcttctgcagcttc<br>ctcatcattctcagccttcatagaattaaaaagagttggggtcttgctctggagtaggctttggctttggggaaggttgtgattggtttgatctatccag<br>gccatgaacatttcatcatatcagcagtacggctgttttgctttcttatcatctgtgtgttaactggactggcacttttaatatccttc<font color="green"><u>AAAAACTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAC<br>TTTTC</u></font>ctttgcttttgcaacttggctatttgtcctatttgtcacaaaaggcctagctgtcagcctgtcttggcttttgacatgccttcctcactaggttt<br>aatcattctggcttctgatttaaagtgagaaatgtgagattcttccattcacttgaacacatacaggccattttagggttattaattagcctaatgtcaa<br>tacagttgtttctcaggaaatagggtggcctgagaagagaaaaagagatggggaaatgtctggttggtggagcagtcaaaacacacacaacatttactga<br>ttccattggctttcttatatgggtgtgctttgtgtcaccccaaaacaattataataataacatcaaagatcactgatcaaagattaccataaca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	209061169	209061477	1001234	0	-	pAlu2-209025091; RIP_Alu_chr2_208_02	NA	NA	SINE	Alu	Ya5	aaaaatattaaaataataaaaaaaaagaaaatatgatgtttatacttcaggagcttactatcaaaataggagattccaaagaaattcactagtagaacac<br>tttaaaagggctggataaatacaatgaagaaagaggcaaacactactttataatagtaataactaccatttgcaaaagacttattataatgttccaagcc<br>aacattatatatatgatatttctaatatttaggagaacccataaggtagattttcattaacaacactttacagaagagagaaataaagtgcagaagtaac<br>ttacccaaaatcacatagttatcattctattaacttaccatgtactactgctacttttcagtaatttaaatataaattttggtgaagat<font color="green"><u>GAAAAATTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>GAAAAATTCCT</u></font>atcaatattctgtggaagtggcaatgttctgtgacatttccacaatatcaaggtaatatatatgtagatataatattgta<br>agaattttaaagactttgaaagggacattgaagtctgatgaagatgcagtacttgggaagtcagaattgcagaaatggtctttctctggctaggtattcc<br>tcctctgtcccatctgtataaaacatggatattatttttatatctgcctcaaggatacgctatgagaactgagaatttcctaactatggcataaaagtgt<br>tctttgctgttgtgttatttgttttgattttaatgtcttgagaataaaaggtataagaagacgtgaatttcccccaaagctaaagcagcctagctggagg<br>gccctcgtt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	212551260	212551542	1001235	0	-	pAlu2-212515181; RIP_Alu_chr2_212_01	NA	NA	SINE	Alu	Yb7	ttcttctgcctcagcctcccaagtaactgggactacaggcgcccaccaccacgcctggctaactttttgtacttttttttttttaagtagagatggggtt<br>tcaccatgttagcccaggatggtctcgatctcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccacgccc<br>agcccagtattgggttttaacccaactcttgtggtcttgggcagcttacactctctgtgactctgcccacctataaaatccatgatcattcctgtttttc<br>atgatggctttgaatattagtattcataaatgaagaaagaataccccctccaaaaagaaataaaactaaaggccaatgtatctcta<font color="green"><u>AAGAATCTAGAGGC<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTA<br>GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT<br>TGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTAGAGGC</u></font>aaa<br>actccttagcaaagtagtagcaaatagcagtcagcaatatatacaaagaattatacaacataaccaaatgagtttattccagggatatacgattggcaca<br>atatttgataatcaaaaatgtaatatattaacagcccaaggaagaaaaaattcattatcatgtcaattgatacagaaaaagcatttgaaaattttaacac<br>ttgtttctgtttaaaaatctcagaaaaaaatagaaattcagagtaagtttctccccttcatgaagaccatctacaaaaatcctacagctaacattatgct<br>taatggtgaaaagctgaaggcttttgcactagattgggaacaagaaaagaaagacctctcttatcactcatttaacatagtat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ERBB4:NM:005235:12/28	
0	chr2	236094684	236095000	1001236	0	+	pAlu2-236110861; RIP_Alu_chr2_235_01	NA	NA	SINE	Alu	Yb7	cggaagtgaagtacagaaatagtgggactgattattgctcagcatttgtcttatttgaacacagtttgaacactcagcagtctatgagtggttgaagcat<br>ggccgctgtgattggccaatactcagctattgttacaggtgcatactactaagttaggtcttcaatgttgtcggcagggacacaacaaaaaaagaaaatt<br>gcaggccaatatccctgatgaacatcgatgtgaaaattctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagctaatccaccacaatca<br>aattgtcttcatccctgggatgcaaggctggttcaacatatgcaaatcaataaatgtaatccatcacgtaaacagaaccactgacaaa<font color="green"><u>AACCACATGATT<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AACCACATGATT</u></font>atctcaataggtgcagaaaaggccttcgacaaaattcaacacctcttcatgctaaaaactctcaataaact<br>aggtattgatggagcatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatggacaaaagctggaagcattccctttg<br>aaaaccggcacaagacaaggatgccctgtctcaccactcctattcaacatagtatttgacgttctggccagggcaatcaggcaagagaaggaaataaagc<br>gtattcaaataggaagagaggaagtcaaattgtctctgtttgcagatgacatgattgtatatttagaaaatcccatcgtctcagcccaaaatctccttaa<br>gctgataagcaacttca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	9959238	9959573	1001237	0	-	pAlu2-9964070; RIP_Alu_chr2_009_01	NA	NA	SINE	Alu	Yb7	cagcgttgctgctgaggaggcctggggacccatggccgcaccgaggtatggtcaggcctggttctgacatcactcagttccccagctctgtgccccagcc<br>acccaacggatgacaccttgccgagtgtggcggctcccggggttgctcctgtggaacagggactccgagcagaaaattctctgaaggcaggaaccaccta<br>ggggtcttgggtcctgaaaggcgaacatcctctttcgccacctccaggaagcccttttcaatatttctcacacttgggaggctaaggcaggaggatagct<br>tgagcccaggaggactgaggctacagtgagctataatgacgccactgcactccagcctgggtgccagagcgagaccttgtctcttt<font color="green"><u>AAAAAAAAAAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTCGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AACAAAAAAAAAACAAAACAAAACAAAAAAAAAAAC</font><font color="green"><u>AAAAAAAAAAACTGG</u></font>gggaggggaggcgggcgggacatgtaatttggacatagaaacacacagg<br>aaaatgccatgtgaagataaacacagatgtgggggatgctttctgttttcccctatggttgatgtttattcaatttatttgttttggtttttctctgttt<br>tagggatcacccctccccatacaatctgactgaattttacttactgaataagtaacacattaacaatgttacaaaagtttgttgaaacgatgcaaaaaag<br>gtatactcagggaaatatccttctgtcccctttcccttctattccattccctcccacctctgtaggtaattaatttcattagtttctagtttatctttct<br>tgtgtttctttttgcaaaaataaacagatttgtatat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	5209191	5209504	1001238	0	+	pAlu2-5214005; RIP_Alu_chr2_005_02	NA	NA	SINE	Alu	Yg6	cagtgtggtattggcagagagataaacacataaatcgattgaacagaacagaaaatccagaaattgaccaaaataaatatgaccaactgttttttgttga<br>aagtgctaaggcaatgcatttataaatgaataccctttttaacaaatggtgctggagcagtttaatatttagagttaaaaaaaataattttgacctaaac<br>ttcacacctcatataataattaactcaaagtagatcttgtacttaaatataaaatgtaacctgatgaaacttttagataaaacataagaggaaacctcag<br>agattgacagctgggcaatacgttcttagacttgacaccaaaacaaataatctacagaaggacaaagtagtaaattagacttcatcaa<font color="green"><u>AATGAAAATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATGAAAATCTT</u></font>tggctctgtagaaaaccccattaacaggattaaaaaggcaagcaatagactaggagaaaacacttgtaaactac<br>atagctgttaagaatgagtatctagaatagatgaaatctcaaagcttaatagtaaaagtacaaatattccaattacgaagtgggccaaaagacatgaaga<br>gacatttcaccaaagaggattgtgtaaacgctcaataaacacgtgaaataaaaacatgttcaggatcactggctgttagtgcacttgtgcctccataata<br>gcacccaccattgactggcagcttaaacagcagacatttattttctcacagttctggggctggaagcccaagatcaagcaggactgaattctcctgaggt<br>atctctcttgggct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	87339716	87340027	1001239	0	+	pAlu2-87297329; RIP_Alu_chr2_087_02	NA	NA	SINE	Alu	Yb7	gcattaaaacctgaaatataagaaaccagatttatcaaaatatgtgcaagatatttacattaaaaactacacaatattgctcatagatattaaagaagac<br>caaagtaaatagagaccatgctccttggttgaaacagaatattcttaatattccaattctccccaaaatgatctatagagctaaggcaatcccaatcaaa<br>atctaagctggctttaaaatagaaactgaaaagccattaagaagttcttgtgagtgtggctggttggtctagggctatgattctcacttagggtgcaaaa<br>ggtcctgggttcaaatcccagaggagcccaacttttagttcaaaagttcttgtgaaaacaaaaataatctagccaaaaatattcttgaaagagg<font color="green"><u>AAGAAA<br></u></font><font color="red">TTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAA</u></font>gaggaagaaatttgaagatatacacagtctgcagccagacacaaaaaaattacatattggatttttcctttttatgaaatgt<br>ccagaaaagagaaatatataaagaatacataggcctgtgatttcctggtctgggagtagaaaggatactgactgtaaataggcattaaggtatttgttta<br>aagtgaagaaagtactctaaaactggattgtagttatcattgtgtaacaaatatttgtgaaaacaattgagctgtttgcttataaaaggtgaattttata<br>gtatttacattatacatttataaaactttttaaagtatttttaataaagctgtgtcattaaaaagaccaataatctgccattcctaacatgtttagtaaa<br>aaaacatgaaac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	203717800	203718092	1001240	0	+	pAlu2-203681722; RIP_Alu_chr2_203_01	NA	NA	SINE	Alu	Yb3a1	aaaaaaaaaaaaaaaaaaaagtgtacctatttctccacatcctctccagcacctattgttttctgactttttaatgatcaccattctaactggtgtgaga<br>tggtatctcattgtggttttcatttgcatttctctgatggccagtgatgaaaatgctcatcatcactggccatcagagaaatgcatatgaccaatggaac<br>agaacagagccctcagaaataataccacacatctacaaccatctgatcgttgacaaacctgacaagaaatggggaaaggagtccctatttaataaatggt<br>gctggtaaaactggctagccatatatagaaagctgaaaccagaacccttccttacaccttatacaaaaattaattcaagattgatca<font color="green"><u>AAGACTTAAATGT<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGA<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTG<br>AACCCAGGAGGCGGAGCTTGCAGTGAGCCGGGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTT<br>AAATGT</u></font>tagacctaaaaccataaaaaccctagaagaaaacctaggccataccattcaggacataggcatgggcaaggacttcatgtctaaaacagcaaaa<br>gcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagggcttctgcacagcaaaagaaactaccatcagagtgaacaggcaaccta<br>cagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctgcaaagaactcaaacaaatttacaagaaaaaaaaacccca<br>tcaaaaagtgggcaaagaatatgaacacacactgctcaaaagaagacatttatgcagccaacagacacgtgaaagaaaagaattttcaaccca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	204563681	204563980	1001241	0	+	pAlu2-204527603; RIP_Alu_chr2_204_01	NA	NA	SINE	Alu	Y	ctccgggacacagttaagcagagttaagagggaagtttatagcactaaatacccatatcagaaagcaggaaagatctgaaattgacaccctaacatcaaa<br>agtaaagtaaatagagaagcaagagcaaacaaattcaaaagctagcagaagacaataaataactaagatcagagcagaactgaaggagatagagacatga<br>aaagcccttcagaaattcagtgaatccaggagctggtgttttgaaaagattaacaaaatagatagaccactagccagactaataaagaagaaaagagaga<br>agaatcaaatagacacaataaaaaatgatgaaggggatatcaccactgatcccacagaaatacaaactaccatcagaaaatactat<font color="green"><u>AAACACCTCTATGC<br></u></font><font color="red">GGCCGGGTGCAGTGGCTCACGCCTGTAATCTCAGCACTTTAGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGGTTGAGACCATCCTGGCTAACATGG<br>TGAAACTCCATCTCTATTAAAAACACAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCTGGGAGGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAGAAAAAAAAAACCA<br></font><font color="green"><u>AAACACCTCTATGC</u></font>aaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagactaaaccatggagaagtcaaatctc<br>tgaatagaccaataacaagttctgaaatggaggcagtaattaataccctatcaaccagaaaaagcccaggaccagacagagtcacagctgaattctacca<br>gaggtacaaagaggagctggtaccatttcttctgaaactattccaaaaattagaaaaagagggattcctccctaactcattttatgaggccagcatcatc<br>ctgataccaaactctggcagagacacaacaaaaaaagaaaatttcaggcgaatatccttgatgaacattgatgccaaaatcctcaataaaatactggcaa<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	208959121	208959453	1001242	0	-	pAlu2-208923058; RIP_Alu_chr2_208_03	NA	NA	SINE	Alu	Yb7	cacctctacaaaaataaataaatatatacattttttaagtgctcactatgtgtttctgtggctgttgttatatctattgtattgtattctacattgtata<br>ttttattattgtctagttaatatattattatccttttcatcagttagaattgagtttttatttagattcaaagcaccacaaatacccactgcaatcttaa<br>aaacaacaattcatatccctggttttgatacccatagttgtaagaaaagcaagagaaaaccggctgggtagagcggctcacacctgtaatcctagaactt<br>tggaatgccgaagcaggagtattgcttgagggcaggagctcaaggccagcctgggcaacatgttgagactctatctctacaatctttaaa<font color="green"><u>AAGTTAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTAACTGGGC</u></font>ggcggccaggcctgtggctcacacctgtaatcccagcactttgggaggccaagg<br>tgggcagatcaggaggtcagcagatcaagaccatcctggctaaaacggggaaacccagtctctactaaaaatacaaaaaattagccaggtgtggtggcgg<br>gcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaattcaggaggcggagcttgcagtgagctgagatggcgccactgcactcca<br>gcctgggcgacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaagttaaccgggcatggtgttgagtgcctgtaatcccacctactcaggaggctg<br>aggcaggaagatcacttgagcacagggggtggaggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	3873218	3873533	1001243	0	+	pAlu3-3864962; RIP_Alu_chr3_003_01	NA	NA	SINE	Alu	Yb7	aactggcagcctctcagttcacttgataaatgggccggagtaacacaccccaacgaggaatgtgttgcctccaagatccaaataggcccactaggcattc<br>tgcctctttcttggttgtaggaggggccaaatacagcaacttatccttcaccttaggagtatctcaccaggccccacaccactggacccctaaaaatttt<br>actgagggggaagattcctgaattttagtcagatttatttctcatcctctggcacgcaaatgtctcaccaataagtccattgtgtttgctacttcttgct<br>cagtggatccaatcagcatactgtcatcaacgtaatggaccattgtgatattttgcggaagcaaaaatgattaaggtctctctgaat<font color="green"><u>AAGACTATGACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTATGACAC</u></font>aaagctggagagttgatatacccctggggtaggacagtaaaggtatattgctgtccttgccagctgatggc<br>aaattgcttctgatgggccttatggacagaaatggagaaaaaggcatttgccatgtcaatggctgcataccaggtaccaggagacgtgttaatttgctca<br>agcaatgaaaccacatctgctgcaattggagtcacgacttagttaagctcatgataatctgctgtcattctccaagatgcatctgtcttctgcacaggcc<br>aaatgggagagttgaatggggttgtggtaggaatcactacccctccgtctttcaagtccttggtggtggcactaatctctgcaattgctccaggatgcaa<br>tattgtttttgattta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LRRN1:NM:020873:1/2	
0	chr3	18755831	18756127	1001244	0	-	pAlu3-18606299; RIP_Alu_chr3_018_01	NA	NA	SINE	Alu	Ya5	tgtaagctgtgacctaagaaagggaaggatctagctatgcaaagtctggttacaagtagaggaaagaacagagtaaaagtccgtaggatgggaaggagct<br>tggtgtgttcctgtaactaataagagctggagcataagtgaggcaatatggacaggagttagatcatactgggtcttgtaggctgtggttagatatttgt<br>attttaccccgaacacaatgggaagtcattgtaagcttttagcaagaaataaaattatctaatttcaattttttaaagaaaatcactttgccaatgtcta<br>gagaaggaattggtatggaaagagtcaaatcagagatattagctgggaggctgttgtggtattctggggagagaagatggtctgaaat<font color="green"><u>AAGAAGGTGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AAGGTGACA</u></font>gcagagatcagtataaaattttggatcagatgcatatgtttggaggcagaatcaatgacttgaatttggtaagttgggggaaaagaggaat<br>catggacaattgctagatttctggcttaagtaattgaatgaatagttgaaacttttactgaaatggagaagtggaaaccaggtatggtagtaaaagttca<br>agagttctatttgggacatgttcagttggtaacgttagtatgtcatcaaataggcaaggcttccactcaagctgtgaaagtacctcaagacttgtaacaa<br>accaatttacaaatatttcaagtaaaactaatattaaacattccatgactcttggagtccagaaatattatgttggtttttctctgttttttttctt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	21457509	21457821	1001245	0	-	pAlu3-21307204; RIP_Alu_chr3_021_01	NA	NA	SINE	Alu	Yb7	atcagttatgcgctcttgtcattgttacaggaattatttaaactgagtcctaacagtgaaagttttacctgacttttgctgatttttttttctttctaca<br>tggggagatttatctctggagcatctcttgtgtttttgtatggtttgcttcagtagctagagaggctactatcaggaagtgaaatggatcatttctaatg<br>gtaggtctccattgcctacatggtatttctgagagtggtatcagggtgtccagtgaaagacggataggttgacatgtcatgctcatttggcctaaaggtt<br>gttactgccaggaatggacttacaacttaccagaatgtgaatggtgacaaaaggcaggttctactctggaaaaatatgtgttattttatt<font color="green"><u>AGAAGTTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGAAGTTCAT</u></font>gcaggtcatgaagagtcacagagtttaaagaattctctggttgggtcatcaatgttcagatgtcaagggactgaaca<br>ttaccttcaatttgagggtcttctctttcctcttctcagtgatggaaactcatccttcctaggtggctaagttgactgtagaaactgctaaaatgtattt<br>gtcaaacgaagtaaaatctgactattaatatatatgatcaggtagagtatcttagagtttggttaactaagacagccgataatggggtcatgttattttc<br>agactggcaggtcatctctaaaggcaatttttaaagattagggctaaaatgatttgtgagcaaagaagtataattaaaaataagtaatagtatagtgacg<br>agttctaaggtta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	26786720	26787026	1001246	0	+	pAlu3-26636419; RIP_Alu_chr3_026_01	NA	NA	SINE	Alu	Y	tctgtgaatggataaggctaggagttgggcaggtggtgaacgctgggatgcctagtgcccaactgcaaagaaaaagaaggcttttccctgcccagaatca<br>ccttctcaggaaagccttcagtagctcttaaaggcagaactcactttagctttttatctatttgcactggggcactgtgttctcctgtatccctagctcc<br>aatgttaggcagggtcagggtagtaagtggcaattttgtgtctggacctaatgtatatggtggctcttgctacatagtgaaaatagtaattcctactttc<br>ctttctttaacagcagtctatattgagcacactgtatggcctcctcgctgtagtgagaagaaaacaatggccagcttaaaagcaata<font color="green"><u>AAGAAGGGACCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGGGACCGG</u></font>agcaggaagtaaaaagggagagtctgttctgtttagaaaagcacataaattctttgtagattctggatattagccctttg<br>tcagatgagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgtagaagctctttagtttaatta<br>gatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggtt<br>ttcttctagggtttttatggttttaggtctaacatttacatctttaatccatcttgaattattttttgtataatgtgtaaggaagggatccagtttcagc<br>tttctac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	61475061	61475371	1001247	0	-	pAlu3-61329867; RIP_Alu_chr3_061_01	NA	NA	SINE	Alu	Ya4	gaactgtggctgggcacagtagctcatgcccgtaatcccagcactttgggaggccaaggcgggtagaacacctgaggtcaggagtttgagaccagcctgg<br>ccaacatggtgaaacgctgtctctaattaaaaaaaaaaaaaaattagccggatgtggtggtgggtgcctataatcctagctacctgggaggctgaggcag<br>gagaattgcttgagcccaggaggcagaggttgcagtgagctgagacggcgctactgcactccagcctgggcaagagagtgagactccgtatataaaaaaa<br>aaaaaaaaaggaatgtgcacatgtgcactgtgtttggtctcattctcataatacgcttgaattgttccatggacttgatttttttaaa<font color="green"><u>AACATGTAAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AACATGTAAGCT</u></font>taaacaacatttaatttttacattagaaaagtgataagaatttatcaaatgataataatgttgatggagtactgaga<br>gagtttttaataaaaactcaagctcctctttaacctcattcctagtatctaattaccaggtccatccagaagaacagagcaatgcctacagcaatttcaa<br>cggttctcctgaaacatatggcacatctcacagttatatctatggagtaaatcctcttgcaacagattcaaaaggatcacaccccaagcacagtgcatgg<br>cacacagtagtggcccatgcatattggttaaatgactaaaagactgtacagtcacacctggttttattaatgttgaaatactttggcaggagatgggccc<br>aaaagctgtta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	81907508	81907812	1001248	0	+	pAlu3-81713027; RIP_Alu_chr3_081_02	NA	NA	SINE	Alu	Ya5	acaatgcctcatgctttaatcatgaggttagtgtattaaagcaatggttgatttttggctcctcccatatactgtatgacatgatatgctaatatattca<br>gaaacctaggaatagtttcatttattgctagtggtaatggccaataatcaaggcataacttcataataagaaattcactttcagaatgaaaacacatcta<br>aaataagaagttttaaattttctaattgttgtcctctcctgcagatgatagttaaactattttgtcagctatgatttataagtacagtactcattatgtt<br>cctattcctttatattttactatattctttttacctttctcaaatgggacatttcctcaagataatgtatataattattctcatt<font color="green"><u>AAAAACTGGTAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAACTGGTAAACC</u></font>tagagaaaatactctgtattttattacttagcaagtctttaccaaacaggtgatttttgaaaacatttaatactcttgta<br>ataattaaagcctttttgtttcattccaataacatttcttaacatttctctccaggtgagtacattttgtgtttttaagctaaaaaaatgcaacacggcc<br>tgccatatatcatatttgttattaaatggctcaaaattttaattatatttttatgttggaatgcaagcatgtattgcagaaatctgaggtcacttttaaa<br>gttcaagagacttttcagaatggtaaaatgaatataaactttaaaagaaatgtcaatgttattcgatacaattactgttaaaaatgaaatagttaaggat<br>aacat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	110219425	110219719	1001249	0	-	pAlu3-111500551; RIP_Alu_chr3_111_01	NA	NA	SINE	Alu	Y	gaacatgtggtgttcaggtttctgttcctgtgttaatttgctgaaaatgatggttttcagcttcatccatgtccctgcaaaggtcatgaacttattattt<br>tttatggctgcatagtattttgtggtgtatatgtgccacattttctttatccagtctatcactgatgggcctttcagttggtttcaaatctttcctattg<br>tgaatagtcctgcaataaacatacatgtgtatgtgtctttagagtagaaaaatttataatcctttgggtatatacccactaatgggattgctggctcaaa<br>tggtgtttctagttctagatccttgaggaatcaccacattgtcttctgcaatggttgaactaatttacactcccaccaacagtgtaa<font color="green"><u>AAGCATTCCTATT<br></u></font><font color="red">GGCCAGGCGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCATGAGGTCAAGAGATCAAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAATATACAAAAAATTAGCTGGGCTTTTTGGTGGGTGCCTGTAGTCCCAGATACTTGGGAAGCTGAGGCAGGAGGATGGTGT<br>GAACCTGGGAGGTGGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCCATCTCAAAAGAAAAAAAAA</font><font color="green"><u>AAGCA<br>TTCCTATT</u></font>tctccacatcatctccagcatctgttgtttcctgactttttaatgaccaccattcaagctggcatgagaacgtatctcattgtggttttgat<br>ttgcatttctctaatgattggtgatgatgagctttttttcatatgtttcttggctgcataaatgtcttctttggaaaagtgtctgttcatattctttgcc<br>cactttttgatggggttgtttgtttatttcttgtaaatttgtttaagttccttgtagattctggatattcacccttagtcagagggatagactgcaaaaa<br>tgttctcccattatgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaatt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	114466484	114466791	1001250	0	+	pAlu3-115747612; RIP_Alu_chr3_115_02	NA	NA	SINE	Alu	Ye5	tgggattaacagaaagggtggaaatagccaaatgtattcatatttttggccaggcgcagtggcttatgcctgtagtcccagcactttgagaggctgaggc<br>aggcagatcacctaaggtcaggagctcgagaccagcctggccaacatggtgaaaccctctctctactaaaaatataaaaaattagccaggcatggtggta<br>cacacctgtaatcccagttcgggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagcaaagactgagccactacactccagc<br>ctgggtgacagagcaagattctgtctcaataaaataaaataaaatgacgttcatatttttaaaatacagcaatattcatttgttt<font color="green"><u>AAAAAACAAGATTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAAACCAAGATTGAGA</u></font>agagcacagttatatagtgacttttgatacatacacaataaaacttattgaattttcaaaaagtgagaaaaaaa<br>ctactctgctttaaatttaaagtaataaataataatgaagacatatcaacattggtaactgtcagagtgagaaaaggaaattgaacattcaatgtgacca<br>gaggaagggtgaacatgggagatactgcccaggaaaagtgctcatgatgagtaattcaaagacccagaatcttaacataaattttttatagttttctttt<br>caagggactatttgaaaaaagatggttctggggtttttgttgtagcttctttctttctttctttctttctttctttctttctttctttctttctttcttt<br>cttctttcttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	126358939	126359249	1001251	0	-	pAlu3-127640448; RIP_Alu_chr3_127_01	NA	NA	SINE	Alu	Y	tagaaaagagaggaaaggatagggaagtgggggcaagaaatgacagagggttgagcaaagactgaagtctggttgaagggtagttgaaggcataaaattg<br>accagatatggtggccagttggatgtagacacttggctgtgtatcagaatgtcttgtggactttaagaaaaattacaaaccacttgtctctttgtgcaga<br>gattttgatctggtagatgtgggcagtgtacgtgcacatttaaagcatcatagatgatcctggttctgaccgtagccaggtgattatgacagggcatcca<br>ggtcatggtaggatatggattgagggagaggaaagaatacaggaagagagactgggggggaaatggaatactgttcactgagat<font color="green"><u>AGAAAACACAAGCAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AGAAAACACAAGCAGC</u></font>tttggtttattggcagggtggggttgagttcaggataatgggttgatgctggacacatttctccagtcaactc<br>aatggagagccttaggtcaagctaggatcagctggttgtagataaaatgaggcctcctgacttggcagtgtaattttggggtagttttatttgctttcaa<br>gaatccttcttctggttgggcgtagtgactcacacctataatcccagcactttgggaggctgaggtagaaggattgttcaagcccaggagattgagacca<br>gcctgggcaacatagtgagactctgtctctacaaaaaatagaaaaattactctacaaaaaatagaaaaattaggcaggcatggtggcatgcacctgtagt<br>cctagctactc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	129912696	129912999	1001252	0	+	pAlu3-131194206; RIP_Alu_chr3_131_01	NA	NA	SINE	Alu	Ya5	tgttagataggatgttaagttgtctggctaggaggctgtctgtctcgctggctttgaagatgtgagctgccatgtcatgagcggccagatggagaggccc<br>atttggcaaaaagctgagggcatcaacaaactggggccctgagtccagcagcctgcaaggaactgaatgctgccaacaaccagatgagcctggaagcaga<br>tcaatcaccagtcaagcctccagatgagaactgagccctggctgacactatggttgcagccttgcactgaacccagctgagtcacgcctggattcctgac<br>ccacagaaaccatgcagtgataactgtctgctgtctcaagccacaaagtttgcagtaatattgttgcacagcaatagataactaatat<font color="green"><u>AAAAACTGTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGGGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAACTGTCCT</u></font>acatcatgtacattactgagcgaaatgtagaacctggatttgagctctgatttcagaggtgtggtctcagtctccccagggaga<br>cctgtcctgggagacagttatgccaggctgtgatgctgtgttgattgttctcttcctacccagaagctttcaataggcatgtcaagcatgtgaccctagc<br>tacatataccaaatgtatttctgacaaatgccaggacatcgtgagctttcttgttttactgagagctccataaaggaatgactatctttttctttttttt<br>tttttaaagagtctcactgtcacccaggctggagtgcaatggtgctatctcagctcactgcagtctctgcctcctgggctcaagggattctccagcctca<br>gcct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	402929	402930	1001253	0	+	pAlu3-133142108; RIP_Alu_chr3_000_02	NA	NA	SINE	Alu	Ya5	gttttttgttcttgcgatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagt<br>attccatggtgtatatgtgccacattttcttaatccagtctatcatagatggacatttgggttggttccaagtctttgctattgtgaataatgccgcaaa<br>aaacatacgtgtgcaggtgtctttatagcagcatgatttatctttgacaaacctgagaaaaacaagcaatggggaaaggaatccctatttaataaatggt<br>gctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatggatta<font color="green"><u>AAGACTTAAACGT<br></u></font><font color="red">GGCCGGACACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTAAACGT</u></font>tagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaa<br>ggacttcatgtctaaaacaccagaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaaccaaagagcttctgcacagcaaaggaaact<br>accatcagagtgaacaggcaacctacaaaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaac<br>aaatttacaagaaattgtactttcaaaaatgtattgaattgggatacttctataattcaaaacagacaccataatattctgctgttttctgtttgtattc<br>gtatgactaggacataga	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CHL1:NM:006614:12/28	
0	chr3	185017344	185017653	1001254	0	-	pAlu3-186419268; RIP_Alu_chr3_186_01	NA	NA	SINE	Alu	Yb7	ataagccgagatcgtgccactgcactctagcctgggcaacagagtgaaactctgtctgaaaaaaaaaaaaaaaaaagaaaagaaggaaatcctatcatat<br>gctacaacacagatgaactctgaggacactgtgttaagtgaaacgaaccagccacaaaaagaaaaatattgcatgattccacttatgtgaagtatcaaaa<br>atagtcaaactcttagaaatgggaagtagaatggtgctactagtagaatggggaagagagaaaaggtgagttattcaaggggtacagagtttcagttttg<br>caagatgaagaagttctagagatctgtttcacaacaatatatataccgttaacactactgtactgtatctttaaaaattgttttaaa<font color="green"><u>AAGAGAGAGAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAGAGAGAGAG</u></font>agaaaacagacagacatacagagaagatagcaatatgaagatggggtcatcgactgaaatgttgttacacagcacat<br>tgctgtacttcattctggcagccctaggaaagtaacacaagggcccacagaagaaagcttgcaagtgagtgcaggctccttttgtgactggggcttcccg<br>ttattctgaaatgttacattagcccacattcagcctttaagaattcattacagttttagctgctttcttcttacctacctttacggtgccttctcttcct<br>cctatgctctgccaaaggtaacacagtttctgtgtcctgtctctcttcaaaagggcttgcctctctttggaatttcagttcatctgattgccttgtgacc<br>tcaactctct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	190669808	190670121	1001255	0	+	pAlu3-192071734; RIP_Alu_chr3_192_01	NA	NA	SINE	Alu	Yc1	acacactggattgaataaatgacagataccacagaataatatgttagtaattatgcagatttagtaattgaaattatccaaaataaaacacagagaataa<br>ttttttttaagtaaacagtgaactggtgacctgggggaaaatttcaagtggtctaacatacatattattggactccctaaaaggtggggcagaaatgagt<br>atttgcaaacacaatggtaaataattgccaaatttgatggaaactgtaaccccacagaaccaagatgctcagtgaacttcgatcacagaaaacattaagg<br>aaattacatcaagacatttaataatcaactcatttaaaaccagataacgatgttttaaaagtagttgaactgcaggaaatcacattgtata<font color="green"><u>AAGAGTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTGTA</u></font>aagaggaagacaggtgagaatgtcagcaacataaagttgaaaacaatttcagaagaaagaggaacaacatctttaaa<br>atactgaaaggaaaatactgtaaattaagaattctctacctagcaaaaatacctttaaaaaattaaagttacagaaattctttttagacataaaaaccca<br>aaagaagatatcactggcagaaatgcagtacaagaaatacaaggagactacttcaggatatatatacacacacacacacacacacacacacacacacaca<br>cacaccagttgggaatacaaagaatcaaaatcaaaatggtaactcttggctaaatgtaatattttttatttaaaatacgttggggtgatcagacccaaca<br>ccaggtcgtggggg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	10397476	10397805	1001256	0	+	pAlu3-10389221; RIP_Alu_chr3_010_01	NA	NA	SINE	Alu	Yc1	ggtgagccaacaggagagagcgtggcccatgtggatgccctgactgaaggaagtgagggaagatgggagggtaagtcttccagtcaactatcgctctctc<br>tggggacgtcagagcttgggagggacccaaggggcacctgggctgacctcccatttcatagctgagaacactgaggctcagagagggaagtggctcgtta<br>gcggcaaagtcggggttgggggttggctccaggcccccctttcccagagtctgtgcctgcagctaacttctctggatgaccatgctgtcaacagaaaatg<br>ccaggaacccagctctgccccctcaggccctgggcatggggagctctcatccttgtcctcgtctgctcatcctcttgactt<font color="green"><u>AGAACTACTTGTCCTTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACTACTTGTCCTTTCC</u></font>tttgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggca<br>accaggcaaaggccctgaggcagggaggcagaaaacctgttctaatctgggttcactcagccactttgggcacatcactgtccccctttgggcttcggtg<br>ttttcttctggaaattggggtttgtgcgggaaggtgtttggactagatcagtcactcaaacctcaagtcatgccctgttagtgacgtgaaatttgtttag<br>tgggtggtgaccaacattttaaaaaagaaacaaagaaatagaagaacagaaaataggtaagtgcatcccattattttgtgaaattcttgctttggtgaaa<br>tgtgtgtgtttactgagtcatgacataaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ATP2B2:NM:001683:11/20	
0	chr3	32203875	32204143	1001257	0	-	pAlu3-32050375; RIP_Alu_chr3_032_01	NA	NA	SINE	Alu	Yb9	gcgtggtggctcatgcctgtaatccagcactttgggaagccaaggtgggcagattgcttgaggccaggagttcgagaccagcctgggcaacgtggtaaaa<br>accagtctctactaaaaatgcaaaaattagctgggtataggggcacacgcctgtaatcccagctactggagaggctgaggcaagagaattacttaaacat<br>gggaggcggagattgcagtgctgagattgcaccattgcactccagcctgggtgacagagtgagacccaggagcttgcaacatgcacctcagagaacatgt<br>tgtgtacgggctgaattgtgccctcctcccaattaatatgcttaggtcctaacccctagtatctcagaatgtgacacggtctttgaa<font color="green"><u>AAGGTAATTAAGG<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAG<br>ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAA</font><font color="green"><u>AAGGTAATTAAGG</u></font>taaaatgagaggcaaaga<br>aaagttccattcaagaaaagacggtaccatagggagtaagaggatgtactgcaggaagttacattggtgctagattgaggggggccacatctgcctaagg<br>accatgtgcttcactctataagagcaggaggcctctgaatgtgaatgctcaagctggtagggaccatggtgttcatctggtcttccatcttaattttgtg<br>gataagaacaccggggcacagaacagctaaatacgtgacttgcccaaggccacagggctaataagccacagggcagccttgaatgctgccctcctgctat<br>tttttctatagcaatggagaagagaagggagggagaaggaaacagaggaagaccggagtagtggtggtc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPD1L:NM:015141:7/8	
0	chr3	1501421	1501422	1001258	0	-	pAlu3-132274989; RIP_Alu_chr3_001_02	NA	NA	SINE	Alu	Yb7	tcatgtctaaaacaccaaaagcaatgacaacaaaagccaaaactgacaaatgggatctaattaagctaaagagcttctgcacagaaaaagaaaccaccat<br>cagagtgaacaggcaacctacagaatgggagaagatatttgtaatctaccctctgaccaagggctaatatccagaatctacaaacaccttaaacaaattt<br>acaagaaaaaatcaaacgaccccatcaaaaagtgggcgaaggatatgaacagacacttttcaaaacaagacatttatgcagccaacagacacatgaaaaa<br>atgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaa<font color="green"><u>AAGTCAGGAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTCAGGAAAC</u></font>aacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttc<br>aaccattgtggaagtcagtgtggcgattcctcagggatctagaactggaaataccatttgacccagccatcccattactgggtatatacccaaaggacta<br>taaatcatgctgctataaagacacatgcacacgtatgtttattgcggcgttattcacaatagcaaagacttggaaccaacccaaatgtccaacaacgata<br>gactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgaagagttcatgtcctttgtagggacatggatgaaattgg<br>aaatcatcattctcagta	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	4041235	4041553	1001259	0	-	pAlu4-4033862; RIP_Alu_chr4_004_01	NA	NA	SINE	Alu	Yb7	gacatggtctctggctgtgtcacccaggctggagtgcactggtgcaatcatagctctttgcagcctcgaactcctgggctcaagtgatcctcctgcctca<br>gcctgccatgtagcaggactacagatcctacagatgcacatcaccatgcctagctttttttttttttttttttttttttttttttttttttttttttttt<br>tgtagatagggagtctcactgtgttttcaaggctggcttcaaactcctggcctcaagtaatcctcccacctcagcctcccatagcactgggattacagcc<br>atcacctaccaatccaagccatgagtttggctttggatgtaacaaggttgaggtgttcacgagttgacaaatggaaaaaac<font color="green"><u>AAAAAAGAAGTTGAGTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGAAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAAGTTGAGTGTT</u></font>taagactgctgtttgaaggagaagtctagcctcaagacaaaagttcaggactcatcagctga<br>gaaatggcactgaaaattacgtaaatggatgagctcagctagcaaacaagaccagagagagcagaaagtccagagagagcagcactgggctatgcacctg<br>gcctaatgctgccccgctcctcccaatccctgtgttatgctggagagggttcagcctctggtgagtttcaccaaacccccacatctctttcttctgagac<br>cttctctaaaatcccgtcttttatacttagtgaaatgggattctctttttcccatccagcttaagcaaaaacttttgactatgagaagaatgaggatgca<br>tttattatctgttctgcat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	28564301	28564610	1001260	0	+	pAlu4-28252549; RIP_Alu_chr4_028_01	NA	NA	SINE	Alu	Yc1	ttttaaaaagtcatgtgacttattaacaaggcagttcttattttcaacttctggaggagaacataagagaaactgtagtgttagactcactgaccacatg<br>taaaatcaaacatgaggtctagactaagaaacagaaggcactaaagaagtctggtaaagaaaaccaacctagcaaccaaaaatggattcatgaaggtgag<br>tcttcttgttttttattcatctgatatgaaaattagttatttggtcagtcagttatgtaatctttactaattaaatgccaaatgtacagctttttgaaaa<br>ctgctacagattgtggacaagggttatgaggctttccatccaattaacaaattaatgcagtcatctacctaacttgactcttcagt<font color="green"><u>GAAATGAGTAATAC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>AATAAAAAAA</font><font color="green"><u>GAAATGAGTAATAC</u></font>taagagctagttgactcttgctgttaacttcctgagtaaatcctgaaaaccaataaacaatagtcggttttgcctt<br>tggcaaaaacaaaccaaagattaattaactggcatgatatactggaaacagatactcaagaagcacactgaattccctctgaatgttatagagggattac<br>aaaaattaaatagagtttgaaaatgatttatgtttagacagtgttgcctaaaggcaggaagagctttcctaaaagataaatttccctaaaattctttttg<br>cttctatggattattgccttataaaaacattagcatcctttgtagaacattttctgtttgtactttgccaagaattctaagcaaggttgttaagtctgcc<br>gcatcatttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	55482437	55482740	1001261	0	+	pAlu4-55332259; RIP_Alu_chr4_055_02	NA	NA	SINE	Alu	Ya8	ttacctaatgttagagctctaataataagttaaagaactgggatttaaaccagttaaatataataatgataataacagtaaacaattcgatcctcagaag<br>tctttgtgtgagctctgagctctgatttccattattaacgccagcctgtctttcgagggttgtgaagattaaatgagatagtgcctgtaagaacttaaca<br>ctgacttgcccaatcaacaagattaatagttgttattaataatagtaactggatccagtattcagaaggctctactgggaggaagtatagggacaaatag<br>caatggagaagtgactgggaggaagaaagaggtaaccggtatagacttccctttggaaaatttcaggtttgaagtttgttttt<font color="green"><u>AAGAAAGCTTATTTACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAAAGCTTATTTACC</u></font>atgactgctatggactgaattgtgtctcccttccctcccccaaatcaacaaattcatagcctgaagccctcatcctcaa<br>tgtgatgatattagaaggcagggcttttgggaggtgatgaggatggagcctttgggattgaattagtgccctaataaaaacagactcaggagagctctct<br>ctctctccctgccatgtgaggatataatgagaaggcaattatctgcaagctgggatgtgggccctcaccagacaccaaatctgttcgcaccttgacattg<br>gacttcccagcctccagaactgtgagaaataaatgtctgttgtttaagccactcattctatggtattttgttgtagcagctcaagctaagacagtggctg<br>caag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	61569242	61569558	1001262	0	-	pAlu4-61506906; RIP_Alu_chr4_061_01	NA	NA	SINE	Alu	Ya5	tactatgggatttagaaatattgtttttcactataagatctttaggttaaactgttttttgtttgtttgtttgtttgttttttgaaatggagtctcactc<br>tgtcaaccaggctggagtgccgtgttgctatctcagctcactgcaaactccccatcctgggttcaagtgattctcctgcctcagcctcccgagtaactgg<br>gattacaggagcctgccaccacgtctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctca<br>ggtgatccacctccctctgcctcccaaagtgctgggattgcaggcgtgagccaccgctcccaatctaggtcaaactgattttttaaa<font color="green"><u>AATGTGTGCTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTGTGCTGTA</u></font>ttactttaatgaaaagtaaaactttattttaagtgatcaatatttttaatgaattcctaaatattataat<br>ctcataatttcactaaaaaattacttggaagcatatacgtttggtggaaaaaatcagtgaccaaaatatcaatagagaaaatattgaatactagagaaaa<br>actagagactgggtataatagactttcattaattcgaaagaatttgcacattgtagtgcctgaatgtaattcgttatttatacaaagagtgattagtacc<br>agtgatcaagactgagaaaactgaaatgactgatggaaatattaatatttggaacatcattctgcttaatatacttttgcaatacttaaaggaattggaa<br>agggtgaagaatgtgag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	69790874	69791166	1001263	0	+	pAlu4-70040703; RIP_Alu_chr4_069_01	NA	NA	SINE	Alu	Yc1	tttgttccatcacaaaagagtaacagcacagcaggcactactgaaaaaattggtacaaattactaaagagagaaaatcaagtattaacaggaattattgg<br>agtaaattatgtcttttaactgactcagtcactcagtttcttatcaagacaatgtataatatgaagatagctggcctctactaagggtattcatgtaaat<br>atgtgtatgcatgcagcacacgatggttttgaatacggcccaacacaaacttgtaaactttcttaaaacgttgtgatttctcttgctatttttttctcag<br>ctcaccagctatggctagtgttagtgtattttaagtgtagcccaaggcaattcttcttttcccactgtggtccagggaaggc<font color="green"><u>AAAAGATTGGACACTCTT<br></u></font><font color="red">GGCCGGGCGCTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAGAT<br>TG</u></font>gacactcttgttctataggtatattttgtgcttaccatgaggattgtataaaaaattttataataaacattgtgtaataaaaatattttaaaaaataa<br>atacataaataaaatagaaataaaataaaaatatagaattaaattattttacataattaatgaaaaataattataaattataaaaaataaagcataaata<br>aataataaataacattaaaatattttaaaataacagtccattttaaaccaaaaaaacctttaattatatatgaaaactgtatttctttacatctcccatt<br>tctactttatgttagtaatatcactagttatatattttatcttctgtcccaattaatataaatgtaatgttacttttatgcttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	81302537	81302865	1001264	0	-	pAlu4-81695227; RIP_Alu_chr4_081_01	NA	NA	SINE	Alu	Yb7	ttgcctatggctagcttatttttctcttttaaatctggcatacattttgaacactaacctcaacctcagcttcactccatttcttcaaccttttctttct<br>ctccatcttttaaaatctttttgtcataagatatacacatttcccttgttaattgcctcaaattcttttgtaggaatgcagactatagatagctgataga<br>tagaaggaagatagtagaaggaaaaaggaacaggaggaaggaaatgttttgaaactatttcccagaagcataatcgggcagcagatcataatgaactatg<br>aaggatgttgagactgaacaaccaggtaaggcattgcaacaaaccaagtcaactggtttgactggattagcgatttacaagaattttaaa<font color="green"><u>AATGTATATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTATATG</u></font>ttaagagtaattataaataaaagaatcagcaagagtccatttttcattaccaattagaatt<br>ttcatcaaggagattttgaagacactctaaaatataaaatctatagggccaaaaatatggtattatcataataaaaatggcattttggcatgggaaatag<br>aattcagtgaaagaaaaataatgagctatttttaaaggcattttgttattggtttgacaaaaagtaacaataagaagtagatatggagctaaaagcccag<br>aagaacagacatgcttgaacatctgaccaaagttaatagaagacataaaagtgtgtgacatattgaagtagtggaatataaaagaggtgtaaatgagaga<br>aatgtcatttgggagagatccaaattagt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C4orf22:NM:152770:2/6	
0	chr4	87385694	87385984	1001265	0	+	pAlu4-87778373; RIP_Alu_chr4_087_03	NA	NA	SINE	Alu	Ya1	aaacccatttagctgactttgtgggtattctcgataaccattttcttaaaacgaaactgtttccatttttgaaattaactaattggattttccctaaaat<br>aactaatttaaaccaattgaaggtgctaagaatgtttttacagatgggtctagtaatggtaaagcttcttattctggatcaaaaggtaaagttttccaaa<br>tgctctatacttcagcttagctgtaattgaggtattcactgcttttgatatgcctattaatgtgatttctgattcttcacacgtggttcattccacacaa<br>ttaattgaaaatgctcagttatgatttcatacagatgaacaactgatgactttctttactcaattgcaaacagcagttaagagt<font color="green"><u>AGAATGCACCCTTTTT<br></u></font><font color="red">GCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTCGGATGCTGAGGCAGGCAGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGC<br>GAAACCCCGTCTCTACTAAAGTACAAAAAATTAGCCAGGCATGGTGGCGGGCACCTCTAGTCCCAGCTCCTCAGGAGGCTGAGGCAGGAGAGTGGCGTGA<br>ACCCAGGAGGTGGCGCTTGCAGTGAGCCGAGATCATACCACTGCACTCCAGGCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAA</font><font color="green"><u>AGAATGCAC<br>CCTTTTT</u></font>acatcactcacattagggctcatacacctcttccgggacttttgactgcagggaatcaaatggctaatcgcctagttgctaatgcaatatcta<br>atgctagacactttcacaatttaacacacgttaatgtctctggtctcaaacacagatacagcattatctggaaagaagctaaagctattatccagcgatg<br>cccaacttgtgaaatggtacattcctcatcttttacaggaggagttaatcctcgaggattggaacctaactctctttggcaaatggatgtcacacatgtt<br>cccttgtttgggagactagcttatgtacatgtatgtgtggacaccttttctcactttgtctggactacatgccaatcaggagagtcttctg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	88032153	88032469	1001266	0	-	pAlu4-88424830; RIP_Alu_chr4_088_01	NA	NA	SINE	Alu	Yc1	acattatttgggtgttgtgatggaaaaaatgttttcataagggattgattaaaaatattttttaggctgggcgcagtggctcacacctgtaatcccagca<br>ctttgggaggccgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatta<br>gccagacttagtggcacgtacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagat<br>cacaccactgcactccagtctgggtgacagagtgagactccatctcaataaaaataaataaaaatgaaaataaaatatttttaaa<font color="green"><u>AATAAAGTTTAAGTA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG<br>GAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAATAAAAAAAAAAA</font><font color="green"><u>AATAAAGTTTAAGTA</u></font>gataaaagtgccaaggttttaagactttcaaatatcctgggaatattttatctttgtttagaggatca<br>aagtttggactttcatttcttcctctgcgtctcctcatcccacccccaatctgccctcccagtgctggtgcaatccaaatactgcaaattggaaatagga<br>aaaaaaggatataattattttttattaggtgttttaataaattggcaaaagttagtatatttgagaatgaattatgattttgaattaagaagttttgagc<br>ttattattatgcacaatatagatttactcttttagtaacactacatagctatggggaatatgagtgcaaaatttttttttaaaaagagcattaaaaaaat<br>ggaagatacacactaat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:AFF1:NM:005935:10/20	
0	chr4	88775650	88775952	1001267	0	-	pAlu4-89168327; RIP_Alu_chr4_089_02	NA	NA	SINE	Alu	Yb7	ctcctagtttcaagcgattctcctgcctcagcctcctaagtagctgggaccgcaggagcatgccaccacgcccggctaatttttgtattttttgtagaca<br>atgggtttcaccatgttgctcaggatggtctcaaacttctggactcaaatgatctgcccatcttggcctcccaaagtgctgggattacagtgtgagtcac<br>cgtgcccagcctgattgcatttttgatcttattgctggtcttgtaggtttaggaaatgctgtagagctcagcatattgatattagcaaagcatttgacaa<br>aattcttttgtgagcatatctaggccagttaataatagagccatagtcattattaaccaaacagctgcacccaaaaagtattgatt<font color="green"><u>AATAGATCAGCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AATAGATCAGCATC</u></font>aggctacaagggggccaacttcaatatgctgcaggcactgtcctagcctgccctctgccctgttcaaaatttcttcaaactgg<br>tgaatgaacacccaggaagtatttgcatcttaagaactgggagtgatagttaatatttaggatcacaaaatcgagattgaagaaacttcaataaaatagc<br>attgtgaaatagagcattatgcatcctggatcagaaaataaatgatataatactgtacaaagagcagagctggtctaatattgttttttatggagtaagc<br>acatgagcaaacaaaaaccagaaggaagttagtacttatataattagaaattaaataaggagaaagggaaactaatatgaatttagcctgtattttggac<br>caa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	89681474	89681782	1001268	0	+	pAlu4-90074152; RIP_Alu_chr4_090_01	NA	NA	SINE	Alu	Yh9	caattataaacaaaagtgtttatgaaacagtttgctcacaaatgtattccttaagtagcacagatgggtacacaagattttctttaggaatagctagaaa<br>tgtattttggcaaatatactatcattaaatgaaaaaactaagaacatctggaaatcataagtgatttcattaatgtatgagaaacgtttctgtgctgaaa<br>gcactacttaagacttgcagctacttttaatagccacccaaccaacccactttgaaatcatcagggaatagccagggctttttactattatatttccatg<br>aaatgatgcatggagacatattttcttcacatttgggataaaatgaaataccatcaatcgggtcctgatgagctactaaagtcttat<font color="green"><u>AGAAATGCCAAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AGAAATGCCAAGT</u></font>atatctggagatttaagatagtttaaaaatgcagtttgtttactggggaaaaagccagattaggcatttatgtcacaa<br>aaagtatttttcccttaagctaaagcctaagtggaccagggttaaatgcccaaatctagttctcagctttttaaattacaaagccactcagttaccaatc<br>atgagtgtgcctgggttgcgggggaggggtcgtgggcggggggaagcaaaagagagtaagaatatgcatacagcaaataagcattttctcaaaaagattt<br>ataatgcttattacctttacagacatcaaaaaatactagaaatatgatttcatttttaaagtatggtatttccttcacgaggaacatacatcaagtcatt<br>taagccctc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM13A:NM:014883:13/24	
0	chr4	97572115	97572421	1001269	0	+	pAlu4-97964793; RIP_Alu_chr4_097_01	NA	NA	SINE	Alu	Yb10	ccttttcctctccctatggctttgtgaacacgtctgtccaacactgatatttcttacaagtgtcaggaagagagaaagttattaaataggtaaaaatcgc<br>cctaaatgcctcaaactccttaaatatatgccagttttcctccatacctcatacctactcagtatttattgctttcttttcttatgttcaaaatctttca<br>aatctttattttcctaatttttttgtatcaagttaataaagaagatatactacagtgttttccttcctcatagtacttgcattttcaccattaaatacat<br>tttaagtgataagtgtgatgctcaccagaggtcctgaatttgaaagaaattttccacgttaatgtttttcaattcagtgatgtgagaa<font color="green"><u>AAACAAAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAC</font><font color="green"><u>AAACAAAATTTC</u></font>taggacacttgcatgaaaatgtatgtgggtgaggaggagaagggattgtccggatgtaaatatgactccttggacaattat<br>gacacatttgttccactccccactttatgactgaaaaacagtcacctgtctatcaagtcaacttaaatcagtaccatcacccttcattctgttgccagcc<br>acttctgctttcacctactttcagattctgtcccatatcatgaggaacctttgtcagataaagcccaataactagcataggatatgaagttgtgtcaaat<br>aacaggtattagaaaataaggaacatgcttccttatctgataaaatttattcctttaggacaattctggttggtctgagagttgatttcttcccttagac<br>agatagt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	115624609	115624870	1001270	0	-	pAlu4-116017714; RIP_Alu_chr4_115_01	NA	NA	SINE	Alu	Yb9	agaaggtcatgtagttgaaatcatacattatgtagcctttcagattggcttctttcacttagttatatgtatttaaatttcctctgcattaatcaaataa<br>ttttatgtatagaattccaggcttcactaccagaaattatgctttggtaagtttgagataaggccaagaaatgtgcattccagaggattctaatacaaag<br>gtacatttatcagtttttgagaaacactgttctaaatgtcctaataataaacacatgatgctctttcctatagagtcagtcatgctcatggcaatatgcc<br>aaatgcaatcaagcaaaataaatgatgtgttacatttatatataatataatacagtttcagggcataattttctgataatgtggctatt<font color="green"><u>AAGATAGACTT<br></u></font><font color="red">GTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCG<br>CCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG<br>TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACAAAAC</font><font color="green"><u>AAGATAGACTT</u></font>tagagtatctgggtgtggaaactaggg<br>cccaaaggataaaatgagaagggcacatgtgccttgtgtggccagcacagtgttttacaaacaaacaaatcacatttgataaatgcccttgggaattatt<br>catgctcttgatatatattttgtgtgtatatgtatatgtacatgtatttgtatatgtatagaaatatgtatatgtatagaaatacagactaatctacctt<br>tacttgagtgggcccctaaaggcctttgggcttgcaacctcaattatagcaatggttttcagattgttcattgcacagctgggggtcccactaaagacaa<br>catggttcaataggagtccctggggtaaactcttctttaaatccattttatttactggactg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	121407661	121407970	1001271	0	-	pAlu4-121800764; RIP_Alu_chr4_121_01	NA	NA	SINE	Alu	Ya3	agaaaagcaggactcctgtctgttttcttcccattattgaagccttagagcctaataaagtgcctaacaaataattaacactcagcaaatgctgctttga<br>ctgagggcattatggtgttatccaagtacctcttaggataggtagcatggaaatagcgatgcattataacattgcatattctcccaagtttatgcaatct<br>cttaaaccatgccaatacacatattggaaatctggggcaagtataaacgtttaggactctattttcactaacaaatacaccacatatcacaaaggatagc<br>caagaaaactcctctgatgaggagaacaattatgcttttgtacttgctttctctagagcatctctcttaggcatatattatcctttt<font color="green"><u>AAGATTTGTGTGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGATTTGTGTGA</u></font>attatatttttcctattactcttttccctcctgtttgagttactggatttgagctgtagatgtaagttctttctttg<br>tttccattcctatattggtatatttatcaccaccaagagtttctagttgatttttccaagtttctctgttataagttttatcctgttgtttgtctttcac<br>tggcatttccattgataatttacttttcttctttgatatttaacaagcatttatccttcaacttttaagtttctcaagaatttacttccttgaggagcac<br>aaagcaatgtgtaacatttcaggagcttgagaaatttattttaaatttggtaaaaaacccaacagtaaggttaggtcacactggggagcaagacttttta<br>gatcaaacaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	125867374	125867690	1001272	0	+	pAlu4-126260480;55248; RIP_Alu_chr4_126_02	GGTCACAAGCATTTCAGACAAGG	GGAAATAGCTGGTGTGAGGAGTGG	SINE	Alu	Ya4	ttgaacatccctaaactgaaaatccaaaattcaaaatgctccaaaatttaaacatttttgtgtggcaacttgatgtcacaagtggaaaattctacagcta<br>agtacataatgcaaactttgtttcttacatattattaaaaggtgtatatgaaatataaattaattttgtgttgagacttgggtctcatccccaagatatt<br>ttattaagtatatgccaatgttctaaaatctgaaatctgaattcttaaacacttctggtcacaagcatttcagacaaggaatactcaacctgtagtagac<br>atttatgtatgctaaaaaataactctacctgcttgcataaaataaaagtgccttagtaatgatactaatatattttaagaaataattt<font color="green"><u>AAGAGATTTTTC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATTTTTC</u></font>aagcgatgataatataaatggatacaactctggatgtcctttttaattcccataaaattacataatttaga<br>cttcccataagtacataatttaagatattgatccattttctactccactcctcacaccagctatttcccactgctaaacagaggattttcaagggattga<br>cattttgtttcatagacagccacttagagtaccccacattggtgctcctttatttattccttgtttcataacatcatcatcacatcatagcatatgtgta<br>tgtgcatgtccatgttgtttcacactctcaggttatctctgctgaaattgaaactaggataatggtcacacattgcctttaggaatcttggcagcaaact<br>aaggaagtgaacccgtc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	133819614	133819923	1001273	0	+	pAlu4-134212719; RIP_Alu_chr4_134_02	NA	NA	SINE	Alu	Yc1	taaatggtgtttagaaaactggatatctatataaaaaagaataaaattggacatttaccttataccatacacaaaaatcaacacaaaatggatcaaatgc<br>ttaaatataaagcctaaatttgtagaaatattaaaggaaaacagagaaaaacactacacaacactgatttggataactttttaaaatatgaacccataaa<br>cacaggcaacaaaagcaagaatagactaatgggattacatcaaattaaatagcttctgcacagcaaaagaaacaatcaattgagtgaaaagacaacctac<br>atcatacatctgacaaggggtcaatttccaaaatatataaataactcaaacaactgaataatgagaagacaaatgactcagtttaaa<font color="green"><u>AATGGCTGGAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AATGGCTGGAGGA</u></font>aaagaatacatatttctcaaaagaaggcagtcaaatggtcaacagctataagacaaatgcttcatatcactaatcat<br>caaggaaatgtaaattataaccacaatgagatattaccacacacctgttagaatggcaattatggaaaggaaaagataaatgttggtaaggatgtggaga<br>aaagagagccattgtacattgctggtgggaatgtacagccattcccacatctgtttagccatgtatacaatcattgtggaaaacagtatgaagtttcctc<br>aaaacgttaaaaatcaaactactgtaaaaatctagcaactccacttctgggaagacatccaaagtatattaaatcagtatgtcataaagatatctgcact<br>tccatgttca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	134141618	134141912	1001274	0	-	pAlu4-134534717; RIP_Alu_chr4_134_03	NA	NA	SINE	Alu	Ya5	aagaaactagacatactataaaattcatacgctctactctgttttccccacaacaatctttagtaaatttctaacccacttaataaagaatagtgatttg<br>aaagagcaccaagttagtaatctaaagatggcaattgtatttctcaaatccttgtgcataatggatttcactttataaagtcatgtcacatcagtagtcc<br>tggtaatatataccctgtaatgtttcatgtgtttgggtataagtagtctcttataatgtctgaaaatgtagaaaactgtggtggatacagaatgacaaac<br>aatatcaggagcagatgtacacaggagatttcagcaggctttcttgtccagcacatcattcattagatggcccaagatatttttat<font color="green"><u>AAGAAATGACAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGCCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAA<br>ATGACAGAAG</u></font>gacataaaagttacactgtttaaagtgtttctgagtcaaatgacattgatggtttaagttactgcaatatacagacacaaaaaaagagaa<br>atacattctcagaaaaaaacatttgcctcttaacacccaaagttcaatactgaggaatcattaagtttatcagagatttcttttaacattttaagtgtaa<br>agatcagttactactaatgcctaacttgcttccatgggaaaataaaagcagcattttttacctatctatatattatgaactttattaggctactcacatt<br>ttgctctattttagacttgatttcaaactcaaagaatagtttgtctgccttggagctcacagcagatcgtaaaccagaaaatatgctcaagaaaca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	157002045	157002343	1001275	0	-	pAlu4-157468140; RIP_Alu_chr4_157_01	NA	NA	SINE	Alu	Ye5	gatatactctcaaataagcaacaatatagaattctttactaacagacagccccacgtgctatattaaaagagatttcttccggtagaaataaaaggacac<br>tagaaacagacttaaagacacatgaacaaataaataatattggcaaaggtagtaaaaataaatagcaacaataataatacccatattgtaagtatactac<br>atgaaatttgttatcagttttttttactttataactcttttctatctaaacaaaagacaacttcataaggcaattatcataaaactgtgttgatggactt<br>atataaacgtataatttatgtgacaatactagcacagtgaggggaaacaaatgaagttatatttgagcaaagtattttatactattaa<font color="green"><u>AACTAAATAGGT<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCC<br>TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>ACTAAATAGGT</u></font>attaatctagattagatcactttaaattaagatgtaaattataatccccagggaaaccactaaaagggtaactcaaaagaatacagtaa<br>aagaaaaacaagaagattataataatacataagaaaatatcaaattaatacaaaaagtgttataataaaaaagggaaaaatgacacaaggcatacagaaa<br>gcaaaatgcaactttaatccgaacttatgagtaattatatgaaccataactgaataaaacaatctaattgaaagacaggcactggaagaatggttaaaat<br>aaaaccgtagctcaactatatattttcaacaaaagacacatatttaattaaaaaaaaacacaaataacttgaaaataaaaggatggaataaagatatgc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	187795712	187796018	1001276	0	-	pAlu4-188380059; RIP_Alu_chr4_188_01	NA	NA	SINE	Alu	Ya5	ctacattattaaaggccattaaatcataacagagaacctttagggctgtgtagaatggatacatttaactgggaataataaaatcattcatttgatttga<br>acaaatgtttaaggtttagaatcaatctgtcattaaaatcctataagcagaccacagtggaaaatgctagttgaagcagggcggaagagcctgaagtctt<br>actcgtatgttcccagatcatccacctccttcacaatcaatatcatccccaccaccaccaaagttaccccaaagagcttatagagcactgttctaaacca<br>tagagcactataagaatgtcctctccataatctctctgggaaaataggacgacttatcctattggcaataaggaggattctccataa<font color="green"><u>AAGATAATTTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGATAATTTGTTG</u></font>gctggactcacatgaagtaagagaaacctccaggagcctcccaagcccctcaaagtgaaatgaaagtggagcattccat<br>ggtgggtgaagaaaagggcagcagtaatccaagggcagatgtccattccatatctgtggccagcaggctgagccttgggcttgaggaaatgtaggaaagc<br>tgaacacaagactgatgcaactgtggaatgcagcaggggtctaaataatatttagctgagaaaaaagagaaagaaagaagccatacacattgtacatttt<br>gagaatttattttctagaaaagtcagaatgtatcatgtccactgaatctcagcacaattccctctggtatgcacaattctctcccgccaaaagcaatatc<br>gatataag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	81456499	81456677	1001277	0	+	pAlu4-81849177; RIP_Alu_chr4_081_02	NA	NA	SINE	Alu	Ya5a2	aagaatcttcaagcttctaaattctatagagtgtttacttgatttctgaataataaaagtaataaagattaaaagagaactgtcatttcacccttgtatg<br>acagagaggagagactcggagtttagcaatttgtgtgtgtgtgcctattccattaagaagaatcatcttcaatctgggtaggacaaagcacccatcataa<br>aaatataataaaataagtgggaaactagttcccgcttctcagacctagcaacttacctgataggaagttacacagaatgatcattttgttttcagagttc<br>tttagaatgggaaaaataccatgatacctgaaaggggacccttccctcattttcccaatgggaaaaatatttaatttcacact<font color="green"><u>AGAACTGAAGAGCTTCA<br></u></font><font color="red">ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACTGAAGAGCTTCA</u></font>tatc<br>actctctagccatgtttctggatggataaataaacagctgattggtgaacgtttagtggagagaagacattaacattaaaagagaacctagattctcagg<br>tacagaaatctcaaaaaactctcttcctgtttttgataaatttactagcttggcagtcacccatttgctttgtgctttaactgggtatgactgaaccttg<br>ctcatgccttaggcaattaagtaaaaatagcttttgggtttgttaagatcagtatgtgtcaatagcatggtgtaattatttagaagtgtaaagcacaaat<br>tatccttgtatcctcagttggccacctctagagtatagtgctagaatgtgaaaactatattttgtagaaaatacactct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C4orf22:NM:152770:2/6	
0	chr4	137218859	137218860	1001278	0	-	pAlu4-16634501; RIP_Alu_chr4_137_01	NA	NA	SINE	Alu	Yb7	gaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaactccaagacacata<br>attgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttaccctcaaaggaaagcccatcagactaacag<br>cggatctctcggcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagc<br>caaactaagcttcataagtgaaggagaaataaaatactttatagacaagcaaatgttgagagattttgtcaccaccaggcctgccctaa<font color="green"><u>AAGAGCTCCTG<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGC<br>AGTGAGCCGAGATTGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAGCTCCTG</u></font>aaggaagcgctaaacatggaaaggaacaaccggtaccagccgctgcaaaatcatgccaaaatgtaaagaccatcgagactaggaagaaact<br>gcatcaactaacaagcaaaatcaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatataaatggactaaattctgc<br>aattaaaagacacagactggcaagttggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctc<br>aaaataaaaggatggaggaagatttaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaac	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	31205828	31206134	1001279	0	-	pAlu4-30894070; RIP_Alu_chr4_030_01	NA	NA	SINE	Alu	Yb7	atccccatcgcttttttttccagagtgaattagtcatagataatcactaacaaatgcacacctattttattatagaactaaagaaactggtattgtttaa<br>acaatgcctgactgccttcctcctcttgaattagattcccttacaatgtcaaaaacaaatactatgaaaaacaatagtataatttatttctaaactggat<br>tcatgaaagatattaaatagccaagtcattttaaaatgaagcacaccagctgcaaattttacttgataaccattggttgagcggggcgggccaggggtag<br>ggggggaaacactagaaaccataagaagtcataatgattttatttattcatgatcttgtacacacactccctggtctgaaaaagatac<font color="green"><u>AAGAAGCCTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGCCTTCA</u></font>atttcaggttactgaattagataatttctcagtgtaacttcttcaagaattgagtgctgacagcatataccatggagagac<br>agatccatgatgagaggtctaggtaacagataatgggaggatggccagctaggcaattagagacaggcaaccagaactgtgatgataatcgtctggtggt<br>agaaatcacagcagatggctgaatgtaggaagaatgatcaatcacagcattgtttgtagtaactaaaatttggaaataactaaatgcccaccattagaga<br>aatagataatgagaacatggactattaatggaacaatgatcaaaaatagtatatacagggagagagagacatgcaagtagagagaaattggttttaagga<br>ctaaata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	46668145	46668146	1001280	0	-	pAlu4-58017031; RIP_Alu_chr4_046_01	NA	NA	SINE	Alu	Y	atctctcagcatttgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattctttact<br>ttaagaaagttgaatattggcccccactctcttctggcttgtagagtttctgccaagagatcagctgtcagtctgatggggagctcctgaaggaagcact<br>aaacatggaaaggaacaaccggtaccagccactgcaaaaacatgccaaattgtaaagaacatcaaggttaggaagaaactgcatcaactaacgagcaaaa<br>taaccagctaacatcataatgacaggatcaaattcacacataacaatattaacgttaaatgtaaatgggctaaatgctccaattaa<font color="green"><u>AAGACACTGACTGG<br></u></font><font color="red">GTCAGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACAGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCTGGGACGTGGAGCTTGCAGTGAGCTGAGATTGGGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAC<br>ACTGACTGG</u></font>caaattggatagtgagtcaagaaccatcagtgtgttgtattcaggatacccatctcacatgcagagacacacataggctcaaaacaaaggg<br>atggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgatagaacagactttaaaccaacaaagatcaaaaga<br>gacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactattctaaatatatatgcacccaatacaggagcacccagattca<br>taaagcaagtccttatgagacatgacagcatgctggcagccctcgctcactcttggtgcctccttggcctcggcgcccactctggccatgcttga	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	147459043	147459354	1001281	0	-	pAlu4-147925127; RIP_Alu_chr4_147_01	NA	NA	SINE	Alu	Y	ttatctcatgtcctgagctccctctgtgaaatgtttagtcaactgcctgacctccacctggatttgtaataggcaccttaaagttgtctccagcgaattg<br>gattttgctcactaaatctgctttcccatctcttctatctttgtaaatgatactaactgtgatggttaatactgagtgtcaacttgattggattgaagga<br>tgcaaaatattgatcctgagtgtgtctgtgaagtttgtcctcactggaatagacattctgaatgtgggtttgcctaccctgcacacaatgcttctgccaa<br>gactaccatccatggactcatggaatgctttatccatcgtcatggtattccacacagcattgcctctgaccaaggcactcactttatggcta<font color="green"><u>AAGAAGTG<br></u></font><font color="red">TGGCAGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAA<br>CATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAAGAGAAT<br>GGCGTGAACCCAGCAGGTGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGCGACAGAGCAAGACTCCATCTTAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAGTG</u></font>ccgtcatggaattcactgaccttaccatgttccccatcatcctgaagcagctgaattgatagaacagtggaatggccttt<br>tgaagtcacaattacaatgccaactaggtgacaatactttgcagggctgggtcaaagttctccagaaggccgatgctctgaatcagcatccaatatatgg<br>tactatttctcccttagacaggattcatgggtccaggaatcaaggggtggaaatggaagtggcaccactgaccatcaaccctcatgatccactagcaaat<br>tttttgcttcctgttcctgcaacattatgttctgctggcctagaagtcttagttccagagggaggaacgctgccaccaggagacacaacaacaattccac<br>taaactggaaat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	151473950	151474251	1001282	0	+	pAlu4-151940026; RIP_Alu_chr4_151_02	NA	NA	SINE	Alu	Ya1	gctcaccatcactggccatcagggaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaa<br>caggtgttggagaggatgtggagaaacaggaacacttttacactgttggtgggagtgtgaactagttcaaccactgtggaagacagggtggtgattcctc<br>aaggatctagaactagaaataccatttgacccagccatcccattactgggtatataaccaaaggattataaatcatgctgatataaagacacatgcacac<br>gtatgtttactgcggcactactcacaatagtaaagacttggaaccaacccaaatgtccatcaatgatagactggattaaaaa<font color="green"><u>AATGTGGCAGCTGGGCAT<br></u></font><font color="red">GGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGATAGCACGGTGAAACCCCG<br>TCTCTACTAAAAATACAAAAAAATAGCCTGGCATGGTGGCAGGCGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGA<br>AACGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGGCTCTGTCTCAAAAAAAAAAAGAAAAAAAGAAAAAAAAG<br>AA</font><font color="green"><u>AATGTGGCA</u></font>tatggaatattatgcagtcataaaaaaggatgagttcatgtcatttgtagggacatggatgaagctggaaaccatcattctcagcaaac<br>tatcgcaaggacagaaaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacagggaggggaacatcacacacca<br>gggcctgtcgtggggtggggggaagggagagggatagcattaggagatatacctaatgtaaatgacgagttactgggtgcagcacaccaacatggcacat<br>gtgtacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaagtacaaaaagaaaaaaaaaataacactccctcacctggca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	44870723	44870899	1001283	0	-	pAlu4-44720539; RIP_Alu_chr4_044_02	NA	NA	SINE	Alu	Yb7	acagaaccttagccctctgaaagcacccagaaatgaagccaatcaactatgtacaacatatatcataggcaaatcctcagagaaaaaagaatataaaaac<br>aaaaagacccattcaaatgacaacaacttcaaaaagataaactctagccctctcagaatagaaagaatcagcacaagaactctagcaattcaaaaaatcg<br>gagtgtttttcttacctccaaaggattgcactagctccccagccatggatcccaaccagattaaaatgtctgaaataacagatgtaaaattcagaatctg<br>gatagcaaggaaattcaacaagattaaagagaaaactgaaaaccaatccaaggaatccagtgcaatgatccaagagttgaaagaaacaaactgaaccaa<font color="green"><u>A<br></u></font><font color="red">TTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGA<br>GATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A</u></font>aagaataaagaaaactctatca<br>tgcaaacaaaaaccaagaagcagcagaggtcattattcttatattagataaaacggactttaaaccaacaacagtaaaaaaagaaaaatacaaagaagga<br>caatacatcatgataaagggatcaactgaacagtaagtgttaactgtcttaaatatatgcacacccagcactgaagaacctggattcataaaacaactac<br>ttctagacctacagaaagagttggctacagaataagagtgggggatatcaacacttcactgacaatgttagacaaatcattaagacagagaaataacaaa<br>gaaattattgacttaaattcaacaattgaccaattggacctaatagacatgcacagatcttcattcaacaaccacag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	13855316	13855616	1001284	0	-	pAlu5-13887951; RIP_Alu_chr5_013_02	NA	NA	SINE	Alu	Ya5	tatttacccagtaggcattcaggagctggttgttcagtttccatgtagttgtgcaattttgagtgagtttcttaatcttgagttctaatttgattgcact<br>gtggtctgagagactgttttttatgatttgcattcttttgcatttgctgaggagtgttttacttccaattatgtggtcgatattagaataagtatgatgt<br>ggtgctgagaagattgtatattctgttgatttggggtggagagttctgtagatgtctgttaggtccgcttggtccagagctgagttcaagtcctgaatat<br>ccttgttaattttctgtcacattgatctgactaatattgagagtggggtgttaaagtctcccactattgaagagtatgggcattaa<font color="green"><u>AATGTAAGATTTAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATGTAAGATTTATG</u></font>gatgaaaatctatgtggagtggttcttgttagtttacttttcatattgagtgatgcatgaggtaggtgttcagagtaatattct<br>gcatcatagtgagagagaagcattttttattttacttaaaattaagttaaatgtaattaaattactagtgaatcattttactgattgtacttttatgcta<br>taaaatgcagtacatttgaaaatttttaggttatgtgtaagcttaattttgtaattaaacatttctttaacatgttaaaaaaagtctcccactattattg<br>tgtgggattctaagtctctttgtaggtctctaagaacttgctttatgaacctgggtgctcctgtttcgggtgcatatacatttaggatagttagctcttc<br>tc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DNAH5:NM:001369:30/79	
0	chr5	17924042	17924353	1001285	0	+	pAlu5-17923529; RIP_Alu_chr5_017_01	NA	NA	SINE	Alu	Yc1	gaaatgaaatggcatagttttttcatagaacttttaaataatgtctatgttacttataatacttagtacaatgtaaatgctatgtaagtagttgttatac<br>tatattgttttagtgtgatttttattattattgcatttttttttttttaatatttagatccttggttggctggaatcagttgcgcaggaacctgtggcta<br>tagcgggtggactgtgtgtttcattctaattcctaacattcattttctttgtagaaagaattcttgcccactctgttctgtgttctttttgagtgctttg<br>ctcagatgtttctcgggtgagggattgatctagagaatataattttccattacactaagggctggatatggttggaggaacat<font color="green"><u>AAGAAAACATGGAAGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAACATGGAAGGG</u></font>aaactgaaggcaaatattgaaatgacagatgagatttataaaggagaaggggagtgctaacattcagaaag<br>cagatactagaatttcattagtttgaaagcattggcttttataaagtctttgatcaaattagtttagatagaaaataacctctttttttttttttttttt<br>tgagacggagtcttgctctgtcgcccgggctggagcgcagtggcatgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctc<br>atcctccccagtagctgggactacaggcgcccgccaccacgcccggctaatttttttttttgtatttttagtagagacggggtttcaccgtgttagccag<br>gatggtctcgat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	21338256	21338545	1001286	0	-	pAlu5-21337738; RIP_Alu_chr5_021_02	NA	NA	SINE	Alu	Ya5	tatagttaatgatgaatgaaagaaggaagatgttaagatgttagggaaggactcaaaagatgcagtgcttgagttagaattttaagggagattatgcaaa<br>agcagtcacttaaggtgggttggggtaatctagaatgtgggaatgaggtatgcaaagtcacacaggagagatacagcatgcatgtttagaaaattgttaa<br>ttacatatggaaagtttgcaggacttgcatcctagaatgtcaggattttaagctaagtagggttcaaattaaatttttcacatacttcgctgcattataa<br>taactagtttatgtttaactcatccactaaactaagttatttgaaaagagatgccagtgttcactcaatctagttgtctgtcattaataattt<font color="green"><u>AAAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAATA</u></font>ata<br>ataatttaaaaataattgagattttaattttggtctgctaagcctgtttaattaaaatttgacattaaataagattttacaggcttctaatttttttttc<br>agtcatcacagtttgaatattaaacattactacttttatctccctcagtcagcataaaacatactacttatggttttaataaccaaattcaatgagcacc<br>aacaaaatttgatgtaactattaactttgaaattttattgaaatagaactatgccttgggtatcattcaaagcatttaattgttgcaataaaaaactttg<br>agataaattgaaatgatggacaatatgggtcgaaagcaacattggcttgagggaaaaggctaatgtttgagaacggaattgttaatgaca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	23413766	23414067	1001287	0	+	pAlu5-23413253; RIP_Alu_chr5_023_01	NA	NA	SINE	Alu	Ya5	ataggagagatgccatgtgacaacagaggcttagattgaaatgttgcagctgcaagccaaaagatgcagaggttactggcaaaccactctaaactaggca<br>gtggcaaggaaggaattgtcctctacaaatttcagaaggaataaggccctgccaatatcttgactgattttggactattgatatctataactgtgaaaca<br>atatatttctcttcttatacctactcctctcctccacatttgtactgtttagctatggtagccctaggaaactaatacactcattgatggagacttgttt<br>aatattggataggattacagatcccaaaacattaggaacagcatttgctgtcccctgcagtttcatcccaccatgtatttagcta<font color="green"><u>AAGAGACAGAAACCG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGACAGAAACCG</u></font>cttcttgaaactgagactatgagctcttttaagttggagttcttttttcctaattaatttttaagagagacgtcaagctttga<br>gagcagtgtgtgtgtgtctataaggatctttgcctgccggtgggtttgctagtgacttcctatcattgataaaatactacttactttcatacatggagtg<br>taaatgaaaaagattaattaaatgtaaaccaatccacagtgatccaaattactaagtgattgaattaccaggtagtggattaatatatggtgacatatag<br>tattagttatttccaagcaattttgtggttttatacattatagcaaacttaaaattttgtaagtgtttctcttctagtctgcactcattcatttagtgtt<br>tt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	24091623	24091932	1001288	0	+	pAlu5-24091110; RIP_Alu_chr5_024_01	NA	NA	SINE	Alu	Ya4	agatggagctggaggctagcatcttttgcaaactaatgcaggaacagaaaaccaaatactacatattctcacttataagtgggagcttgtgttacaagtg<br>ggaatgtgtgttgttctcccccaaccatccatgtgtccttaccacgtgtgcagggtatgcagatttattacataggtaaatgtgtgccatagtggtttgc<br>tgcacagatcatcccatcacccagggattaagcaaagcattcactagatgttcttcctgaccctctcccctcctcctaaaccctgccctccaacaggccc<br>aagtgtgtgttgttctcccccaagcatccatgagatagaacttataagatagatgaaccattattgtcacccccattttccacat<font color="green"><u>AAGAAAACTGAGGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAAACTGAGGCA</u></font>tagggagattaagtaacttattcaaatttatatttctagtaagtgacagagtggagatttgaacccatgacatct<br>ggctctggatcactatgagtaatatctcaaggggcagcttaaattctcactcacctagtattttatcaagtgacatatgaaataaagaaatataagtata<br>taatttattaatatcagaaatcttggccctaaatttctattttaaatgtaggatttagaacctttaataattgtaaatgtcaaataatgttagttatact<br>ttattaaaataagaattggcatacttatctttattatttttcatatgtatttttcttgcttcatcttcttttgtttaactccacatgtgtatgtggttaa<br>tacaacaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	24452853	24453161	1001289	0	+	pAlu5-24452340; RIP_Alu_chr5_024_02	NA	NA	SINE	Alu	Yb7	aaaaacttcaataatgattgtatttagtatgataattcatatgtagttattcacttcaattttatattttctgtaatacaatattctggtatttttgaca<br>gtattactatcaaagaaaaaaagtgtgttcatatactatagtaggtaactggcttaaggaactacagaattcaatgaaagtcctcaaaagggctgacctg<br>ttacaatctctaattttccatgttgaaaaaaaaatcattaattttaaaaatgtgttcacatgtttaaaggcttggaaagtcaacagtgagtctttaaata<br>attttgtgtttttctcatcattaaaccaaatgaaattgacaggaatgagaacctctgccaaggggagacacttgttattttctgctt<font color="green"><u>AAGAAAACAATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAAACAATAG</u></font>aacttggacattttagtgtctaagacaaccaaacactcaaacttagaaaaaaaattagagtatgtggttgtataattt<br>tagatttctgaattccttgtataagtttatttgtaatgtagattttattaaatttattttctattgtataaatgattgcatacatgtaacagattctaat<br>agattattgttaaatatagtagttaagagcataaattcaggtgttaaccttccactgttaaatcttattttgataaattattatctgcatgaccttgagt<br>aaattaatagcacctttctcgttgagatgttacgggaattgaatgagttgacatgtgtaaatgacttataatggtctgcacgacattcagaaatcaatca<br>gtaaaattt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	26111203	26111514	1001290	0	+	pAlu5-26110690; RIP_Alu_chr5_026_01	NA	NA	SINE	Alu	Ya5	ttacttataattgtaaaatgaaaaaagaatggatctttatactatcaacattacagatatgtccccaataaggagtaattaaaatgctagtctcacccat<br>gtttccagatcatagttcaactagagaaaaaaaaaaaaatcatcactcctaattatgcaaatgtgggaatattgatagacattatccttggattacgatg<br>ttactaagggatgaagtctgttctctgatatatatctggtgtaaaaaatttgtccttgcagaagtcattggccaatttaaagaggctttcttaaaatgtc<br>taaagccgacttcctgcagatcctctttctctcattaccaagtatcacactattttctctttatggtgcatatatataagctataa<font color="green"><u>AACAATACATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AACAATACATTACTG</u></font>gcttcttcccttggacttataatgtcacctctttatttgaagcaagcatctagtcattttctttcatcttttc<br>acaagtgcatattatactttagttctctagataattacctctttcacttttatcaccctgcttctggctaacttccacatcacagctactatgaggtaat<br>atgaaccactcctaagtaaatgatattcttgaaactgctgaccagaaaattttacatccctatagaagttatagatacagcaatgccttaggatctcttt<br>tgaaaagtggcaaatacatctggttattctgcaaatttctaaaccctgagttatacctgtcatcattgcaggattcaaaaaagtgttcctgctctatctt<br>tgtatgtcaaaca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	31677442	31677748	1001291	0	+	pAlu5-31676929; RIP_Alu_chr5_031_01	NA	NA	SINE	Alu	Y	ggactgctttccccaaggccagagacatggcggatcctattccttcccctgccaggtgacttaactcactcccttgttgtaggcctttgtgtcccctcga<br>tagggtcagccctatgaaaaaaggatgaatctacctaggagcaaggccctgcttggggaaaaacaaccaaaatgaaaagtggttcatggctgataagagc<br>tgaaagctttgaaagcttcagttgccaggaagggttgcattactgtcaagccgaggcggtggggaatgacagcggattattgtgtcctgccctccctagc<br>cttgcactgggtttcaggggagcttctgggacaaaaccattcgagagtgagaccctgtctctaaaaaaaatttttatttgtttaaa<font color="green"><u>AAGGAGGTATATCC<br></u></font><font color="red">GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAGCACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGGAGGTATATCC</u></font>atgtgatggagtactatttagtgataaaaagaaatgagctattgacacatgcaacaatgtggatgaatctcaggatcat<br>tatgctgagtgaaagaagcaagacaaaaaagagtacatacggcataaatgcacttatatataataaaattctagaaaaggcacgctgatctttaggggta<br>gaaagcagaccaacgtttagggggtcgaatggggatggtaggacagcagcagaggaggaaggggggaggaccaagggaagggagggactttgggggctaa<br>tgagtatgtccgttatcttagttgtaaagatggtttcatggataatgatggttttatatataaccatatgtaaagatggtttcataggttaaaagttagc<br>aaacctg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	61776732	61777044	1001292	0	-	pAlu5-61747158; RIP_Alu_chr5_061_02	NA	NA	SINE	Alu	Ya1	tcaagtgggcttcattcctgggatgcaaggctggttcaacatacgcaaatcaatgaacgtaatccatcacataaacagacccaaagataaaaaccacatg<br>attatctcaatagatgcagaaaaggccttcgacaaaattcaacagcccttcatcctaaaaactctcaataaactaggtattgatgggacatatctcaaaa<br>taaaaagtgctatttatgacaaactcacaaccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggataccc<br>tctctcaccactcctattcaacatagtgttggaagttccggccagggcaatcaggcaagagaaagaaataaatggtattcaattagga<font color="green"><u>AAAGAGGAAGTC<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACAAGATCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGG<br>TGTGAACCCAGGAAGCAGAGCTTGCAGTGACCCAAGATCACGCCACTGCACTCCAACCTGGGCGACAGAGCAAGACTCTGTCTCCAAAAAAAAAAAAAAA<br>AAAAAAAAAAATG</font><font color="green"><u>AAAGAGGAAGTC</u></font>aaattgtccctgtttgcagatgacatgattgtacatttagaaaaccccatcatctcagcccaaaatctccttaag<br>ctgataagcaacttcagcaaagtctcagaatacaaaattaatgtgcaaaaatcacaagcattcctatacatcagtaatagacaaacagccaaatcataag<br>tgaactcccattcacaactgctacaaagagaataaaatacctaggaatccaacttacaaggcatgtgaaggacttcttcaagaagaactacaaaccactg<br>ctcaacaaaataagaggacacaaacaaatagaagaacattccatgctcgtggataggaagaatcaatatcgtgaaaatggccatactgtccaaggtaatt<br>gatagattcaatg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:IPO11:NM:016338:9/30	
0	chr5	70190930	70191245	1001293	0	-	pAlu5-70347702; RIP_Alu_chr5_070_01	NA	NA	SINE	Alu	Ya5	taataaagtgttcacagattgcatattttatttggaaaactatcaaggataattaaaggggcaagagattagctaagatataattggttctgggaacaaa<br>agcaatagagttccatgaagcaaagagcattcatgatttgggtgaagcggggcattcacccagaataaaagacttgctaagtttgctcaggttacatcag<br>ggacacatgtaatataggtggttaaatagatgggggggttaatgcccataaattcttagtccagcattctcatgatgacaggaaaagtaagaagatattg<br>tcctatttatgtgaaaactggcatggaaaagggagaagcaaaagagaaaattttacaatccattaattagtttcattagctt<font color="green"><u>AAGATATACTCACATATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>GGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATACTCACATATA</u></font>tgcatcatcaaaattctggaaaattaggccactactaacacagcttccaatatgttggtaaagcaa<br>tagttcatcaagattaaaaataacttagtatatacatttctcaggtacattttatatttttagtcaaagagcccacacaattgttttatgttgatatgga<br>aaagacagtgctgacccatttctcgtaaagtgagaaactagaacttttctttctttctttctttccttctttctcttttttctttttttttttctttttt<br>tttgagacagtttcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccaaatggctggaattacaggcaaccgcca<br>ccacgctcagctaatt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	77105233	77105550	1001294	0	+	pAlu5-77143846; RIP_Alu_chr5_077_03	NA	NA	SINE	Alu	Ye5	actctcatagactgaaatgtaaattagcaaaatcactttggaaaacagtttatgtttgtattgtctagaaaagttgaacatatgctaagctagtagttct<br>acttctatagttctacttctatgattatacccaagagatattcttgcatatgtgtagcagtaaatgtgaataagtatgctttagaagcattgctcataat<br>agcaaaaaaagataaccaaatattcatcaaagtagaatgcatgagtatcatacagcagtagaaatgaatgaactgaaactacacacattgacatgaagaa<br>tctcaaagacaatgtagagcaaaagaagcaaattacacacaatcacagacagcatgtttgcatttatattaacttcaaaagcagacaa<font color="green"><u>AACTAAACATTA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACTAAACATTA</u></font>tatcttggagagatatattcaaacatggtaaaacttcaaaagaatggcaaagaaaagattgctcaaacat<br>tagcccaattgttagtcctggcagggaagagaggcacaatattgggaaagaacatatggagagcaatgttttacttgttatcttggatggtggctacata<br>atcacttactttgttactgagaggtgaagccagctggacttcctgggtcaagtggggacttggagaacttttgcgtctagctgaagggttgtaaatgcac<br>caatcagcactctgcagaaacgcaccaatcagtgctctgtgtctagctaaagaattgtaaatgcaccaatcagtgctctgtaaaaatgcaccaatcaaca<br>ctctgtgtctgactaaag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	88032030	88032343	1001295	0	+	pAlu5-88070642; RIP_Alu_chr5_088_02	NA	NA	SINE	Alu	Yb7	aggcattttgccttgtctcacagagctcacttgaacatgtagctctctttgagctcaaagttctgaaactttcttttatttggatgtttaggcattttga<br>gttttcttcacttgtttctttttcttttctaggactttgaattatgaatacaagcatataagactaataagcataaacagaattagtcactatggaccat<br>ggctaattctgccattggcataaccattttttaatctaccaaactgtcatcttctattatcccctctcctccttccatctccatatccaatgagatacca<br>aatcttattcatttttcttcagaaatgcctgtctctacttccactgccaccatcttagctttggcttccatcaccatttgaata<font color="green"><u>AATATTTCAGCAACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATATTTCAGCAACTC</u></font>tccatctgggcctctggtctctacttgaggggttcttcaccaggccttaagaggagtttcaggccttcag<br>aggagttccttaaagctgtatgcaaacttttgtgcatttgtgtgatgctaaccaacccactcaaggaagtctttctgaactgctacttccatcatgttcc<br>tttttcatacatgagtgcttaacacagttgagtcagtgccctgcctggctctcagaactgtctacagttgacacactctatctatgaaacctaatttcca<br>atggtcacagcctgccttatggtcctcggaatatatgcaaatctttgctctagcagttcaataactggcagtattggctctcctgtttaattcaaattta<br>tcttttaaggatca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MEF2C:NM:001131005:7/11	
0	chr5	95909732	95910061	1001296	0	-	pAlu5-95938354; RIP_Alu_chr5_095_03	NA	NA	SINE	Alu	Yb7	acatccatatccaaaaagatgaacataggcaagaaaacttcatgcctcaaagaaaaattaaccaaaaatggattgtaaacataaatgtaaaatgtaaaat<br>tacaaaacttttaggaaaacacaaggaaaatttgagaattagggctaggcaaagagttcttagactccatgcatgaaatacaatccataaaaggaaaaat<br>tgatgcattgaacttcatcaaaataaaaacgattgctatgtgaaagcccatgttgaaaaaagatgaaagacaagctacacaatggagaaaagattagcag<br>accgtatgttcaataaatgactagtacctaagatacacaaaaaagctatcaaaacccaacagaacaaaatgaatcaatccaatt<font color="green"><u>AGAAAGTGGGCAAATG<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGTGGGCAAATG</u></font>tgtgatgtttggataacaaatttggtgtatttccaatggaatactacgtagcaa<br>taaaaatgaatcaaatactgaagacaaatcatagaagatctcaaaaacattataataatcaaaacaggccagaaacaaagaatatactatatgattccat<br>ttatatgatgttctaaaacaggcaaaaatcatccctcatgaggaaatcagaagagtggttgtttgagaaagttggattgtctgagaaggggcacaaggga<br>actgtttaaatttatgtaaatattctctatcttgtttgcagtgtgagttatatggatatgcctatgtcagcattcaccaaactgtgcatttatgatctgt<br>gcatgtcattttttttttgagacagggtgt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	103030568	103030879	1001297	0	+	pAlu5-103061322; RIP_Alu_chr5_103_02	NA	NA	SINE	Alu	Yc2	actttttgttttctaatttattatccccacactattgcttttattctctattcttctaaactgtcattcaaattatacaactaaataaatgttaaaaaat<br>tataatttatatctggtcttgcggtcaaagatagtttgataacataacaaagatttcttacacatttttctttagtatataacatatagttaagactgat<br>acagaaaccttaggatgcatttgcaggtaactagttacatatccaatctttctgtctctctatctagtcttggaacctaaaaatacagaaatatgcacct<br>tgctaaagacaaaagaagcacagccatgctggaatgcaagaatttgtacagatgttaaggatgtgcttcagcctggttctcgcattt<font color="green"><u>AAGAATCAATTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACCGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAATCAATTGT</u></font>aaaaaataaagaaaattctaaagtgtatcgtcaggttcctagaaataaatagtataaagtagaggcagaaaggag<br>atgaaatgggggaaatagaacagaagatgaaaataaatgccaaacttggaggcattaaaataattctgtaagcatattttttacttgaggttaattctca<br>tttttgttaggacattctgtcttcttaatagcaaagagttgattgaccattttgaccctaatttccatcctaagcaagtcaaaaccacaaaggcaaatca<br>cagttattttttgtgtgaaaatagtccagatatggaccattactcttgatgcttgtatttttgtgttagaatatgtttggggaatgcctgtatttgtgaa<br>ccctatggttat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	116428196	116428500	1001298	0	-	pAlu5-116458955; RIP_Alu_chr5_116_01	NA	NA	SINE	Alu	Yb7	catataccctggaaatttctataatcataatgcatcgattttttaaaaaaaggaaatttctttagtggagaaccttatcatctaattacttctttgtcaa<br>aatgatatattgacttattaattatgaaatggccccaatcaatgatgatattaatatcaatgtttgttactataatttaaatatcattattctgtgtagt<br>atcagtaaagtctgtcattggttgaatttgtgttttatattgatattgttctgatttttaattttaaaaatttttaaattaatttattaaaatcttaaat<br>tagtttaaaaattttatactctgccagtggacacatatagtaacagttgtaaaaagagtaatctggctaggagaaatgctacccttt<font color="green"><u>AAATTGGAGTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTCACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAATTGGAGTATG</u></font>tcaccgaatggtttgcctttgcatggcctaatgaaagttagcaaaagagaacttggccacatgtgtggccctgtgggaagag<br>gtaggatgattttatgaaaagccccctgggctgagagccacaactcctaaatcattagttatcagtcatgtatacttgtttgatcagttcattttgtgag<br>cctcggtttacttattgtaatagagaaataatatttacccttcagaatgagaagctaatgatatgatgcacatggaagggttttgtgaattattaaagcc<br>atgaaaggatagggagttccttggcatctcagtagaagactagcaatatatgatcacctgtaatccgttaaactctgattctggcagtcgttggctttat<br>tgcag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	141423770	141423771	1001299	0	-	pAlu5-119142738; RIP_Alu_chr5_141_01	NA	NA	SINE	Alu	Yf1	tgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaa<br>gaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcat<br>ggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattc<br>ctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttgttggtgtat<font color="green"><u>AAGAATGCTTGTGATTT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCACGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAAGCACACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAATGCTTGTGATTT</u></font>ttgtacattgattttgtatcctgagactttgctaaagttgcttatcagcttaaggagattttgggctgagacaatggggatt<br>tctagatatacaatcatgtcatctgcaaacagggacaatttgactttctcttttcctaattgaataccctttatttccttctcctgcctaattgccctgg<br>ccagaacttccaacactatgttgaataggagcggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcag<br>tatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttattgagagtttttagcatgaatggttgt<br>t	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	147321650	147321651	1001300	0	-	pAlu5-130120284; RIP_Alu_chr5_135_01	NA	NA	SINE	Alu	Ye5	gatatagatcaatggaacagaacagagtcctcagaaataacgccacatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaa<br>aggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattc<br>aagatggattaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttc<br>atgtctaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggttctaattaaactaaagagcttctgcacagcaa<font color="green"><u>AAGAAACTACCATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAGAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACTACCATCAG</u></font>gagtgaacaggcaacctacaaaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatc<br>cagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagac<br>atttatgcagccaaaaaacacatgaaaagatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctctcatcagtta<br>gaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttca<br>accattgtggaagtc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	158592405	158592736	1001301	0	+	pAlu5-158527851; RIP_Alu_chr5_158_01	NA	NA	SINE	Alu	Ya5	ttgagaattaggacgcttttcctttccttttttaattcccagtacactgaattgaattcatcacaatccttgattgacgatgtactgtcatcatttgtct<br>gtgcatgtccctccttttatttagtcagtaatctaattaactattgtcaataatgtaacaagcatttatgaacccacttcccacatacaggtgaaggcct<br>ggagaataaaccacatctaacgacaggggcaggcctgcctatatataccatgttctcgcccctctgccccacgaaaccactatcttgaatcctgtgtgct<br>tcattctcttccctgcttccctttttatagtttggttttatctatatgtatttctaagtattacaaattttaaaattttgtttttaacat<font color="green"><u>AAAAATAATA<br></u></font><font color="red">TCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAATA</u></font>atatcctacattatcatctttttggatttacttttttacctcgtgctgctatgatcat<br>tcatactgatttgtgggtcactatttttaacatagcactgtgactattaccacattttatcatctactttcttgttgcattggcatctgggttgttccca<br>ggattctggtgaggtgaactgttctacgaacattcttctacatgtctcctactgtacacatgcaagagtctttgaatatatacctatgaggagatcatgc<br>caaactctcttccaaagtgactacaccactttacactctcatcagtaccatgggatatcctgtggagctgcaacttcccccatcataggtattggcagat<br>tttttccctcccctttctatctccttcctttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RNF145:NM:144726:8/11	
0	chr5	160431315	160431636	1001302	0	-	pAlu5-160366767; RIP_Alu_chr5_160_01	NA	NA	SINE	Alu	Ya5	gtgaagctaccatagaagttcaaagattggtcagcctggtggtccttgaccccagcaaagccacaccataccctccacaaacacctgcagcagaggccac<br>tgagacacttatagacaccgtgaacattgaatacagccataaaaaaaaatcacataaagagtatactactgcacccacccagaaccaagtcaaaacatcc<br>taccaaacatactatggacacatatacaggaaaaagtcttttcctatgaaagctacttcataaaattagaagctgttggtccactaagtacatagatatc<br>aatgtagaaacaaaagaagaaaaaaaagaaaaagaaaacatggcactttcaaaggaacagaataattctccagtaacagatcccaataaaa<font color="green"><u>AAGAAATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATCT</u></font>atgaaatgtcagaaaataaatctgaaataatgatcttaaggaaactctgtaggatataatacaatacaa<br>agaaacaattcaacaaaatcagaaaaaaaaatcatcatctgagtgatatattcagcaaagggatattataaaaaataaccaaatggaaatatttaaacta<br>aataatttaatgaataaaataaaaaatgaaatcaagagcttcaataatagagtagagcatgcagaagaaagaatttctgaacttgaaaaaggtgttttga<br>aataacccagtcagacaaaaaagaaataaatttattttaataaatgaagaaagcctatgagacttatgggacaacattaagcaaacacattttacattgt<br>ggaagtttcagagggtgaacag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	89860436	89860742	1001303	0	-	pAlu5-89899055; RIP_Alu_chr5_089_01	NA	NA	SINE	Alu	Y	gcaaaagctaatgggtagagagcttcttttggaggtgatgaaaatgttctggaatagacagtggtgatggttgcacaactttttttttgagatggagttt<br>tgctcttgttgcccaggctggagtgcagtggcgggatttcagctcactgcaacctctgtctcccgcgttcaaacgattctcttgactcagcctcccaagt<br>agttggcaatacaggcgcccgccaacacgcccagctaatttttttggatttttagtatagacagggtttcaccatgttggtcaggctggtctcaaactcc<br>tgacctcaggtgacccgcccaccttggcctttcaaagtgttgggattacgggagtgagccaccacgcccaggccacaactttttaa<font color="green"><u>ATATATTAAACGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>TATATAT</font><font color="green"><u>ATATATTAAACGCC</u></font>atggaaatgtgtactttgaaaggtgattgtttttcatatgtgaattatctatcaatttaaaaaacaatcaaacctctgc<br>acttccagctatctctttctcttctttcaacatttccagccaggttaatctaatacgtgtctgggacaaaacacttgtattattcatgcttctgcacctt<br>taatctaagctagtcccagtcctctctacctttttccactccctctcttccaccatttttcaaagtcccaatcaagtcccactttttccagaacactctc<br>caaccttagcttactagtctgccagagaaggaacaagctctcttcatttcattcctgctcatcaacactgttgaaattagttaaataaaactaatgattc<br>taactat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPR98:NM:032119:1/90	
0	chr5	11339039	11339349	1001304	0	-	pAlu5-11371677; RIP_Alu_chr5_011_01	NA	NA	SINE	Alu	Ye5	atttgtgattaggtttcagcctacaaatctagggggtcacaaacattcagaccatagtggctgccataatagattaccacaaagtgggtggcataaacca<br>ggagaaacttatcatctcacagttctggaggctggaagtctgaaatcaaggtgtcagcaggaccatttcccttcaaattcagtttttcctgtggcaatac<br>catctgttcctcaccatgtaccagccctcacctcctcccgcggtactgcttttgtcacatctgccttatttccccatagcatgatggtcatttgtagatg<br>tccctttccctctcacacaactttgaaagctcattaaaaaatgaggctgtttaaaaaatgaggctgtttaatgaaagctcattaaaa<font color="green"><u>AATGAAGGAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AATGAAGGAACTG</u></font>tgtactcagccctcatagccaagagggaagataggaagaagggagagaagactccaaggcaaaaagacctttttgt<br>tttataaaacttccttttcaagagttcttttatcagtttaaaagaaagtaatgttcacacacagtatttgtctgtgataatattgatttttttcagtact<br>tataataaacaattgcattccaaaataacaactcatttctaatgctacctaaatatacccacctaatttatactaaggcaggttctggcataggggcctc<br>catgatatcatgtggtcaagagtaatgagagacaggcaatcatgcctgatgcatagtcctacccaaagtactagttacttaattcctcgttagcaaatac<br>cccatcctttg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CTNND2:NM:001332:9/22	
0	chr5	62704452	62704761	1001305	0	+	pAlu5-62674875; RIP_Alu_chr5_062_01	NA	NA	SINE	Alu	Ya5	atttttattttgtcaaaattaggaacattttctcttccaaataaagtttctttttagaaaatggaaaagcaaggcagatgagaaaatatttgcaaaacat<br>atctgataaattacttatgctgcattatatcaaggactctcaaacttcaataagataaataataaaaggaatttgcaaatgattttaacacatttatcaa<br>agaagatatacagatagttaataaatacataaaatatcacaaattcactagtcattagagaaatgcaaattaaatccaaaatgagataccactgtacatt<br>ctttatagtgggtagaaataaaaagcctgatcatgtaaaatgctggtgagggtgtgaaacaattttaactcttaggtaatgctgatt<font color="green"><u>GAAATATAAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATGCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAATATAAAATC</u></font>atacaactttggaaaacagattatcatgtttaaaaaagtgaaatatacacgtttcttccactcttaggtattactta<br>atgaagataaatgaaaacatatgcccacacaaaggaatgtgaatggaataaaaaagacaagaaaactatgattcaattccataaaattccagaaaatgca<br>agcttgcctgtcataactgtaagaatatcagtggttgctggagacaaaagacaggtgatgacagggaagaatagctgtattacaaagtggcatgaaaata<br>cttcttggagtgatggatatgtttatttccttgattgtagtgatggatttacaggtatgcacatatgttaagttcacgaaattttacactttaaatatat<br>acactgtgct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	168742540	168742760	1001306	0	+	pAlu5-168677982; RIP_Alu_chr5_168_02	NA	NA	SINE	Alu	Ya5a2	ataaaggagtcgattcatcaagaggacacacaaatcctaaatgagtatgcatccaacaacagagcttcaaaacacataaaaacacataaaaagagaaatt<br>agtagaacaaaaaggacaaatagacatattcagaattatagttggagatgttaacactcctattgcagtaattattggaacaagtagacatgaaatcggt<br>aagaatctatatgagagacttgcaaaacactagcaatcaaataagcctaactgacatttggagaactttctacccagcaacagaagaatagacattattt<br>tcaagtctacttggaagatccagataaataatagtctgaagcacaggacaagtttcaataaatttaaaaagagtgaaattatataaa<font color="green"><u>AATGTTCCCTGAC<br></u></font><font color="red">TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAG<br>GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTTCCCTGAC</u></font>caaaacagaattgaactagaaatcaaaaacacaaagatatgtggaaaatcaccaaaaattttgaaa<br>attaaatcatattcttctaaataaatcatggtcaaaggagaaatcacaagagagattagaaaatattttgaatggaatgaaaattaaaatataatatttt<br>aacattcgtggactgaagctaagatagtatttagagggaacattaaggcattaaatgtttatattagaaaagaaggaaggtttaaaatcaataacctaag<br>cttccacattcagaaaccagataaagaagagaatgttaaatccaaagtaaacaaagtaaggaaagaataaagagcagaaatcactaaaattgaaacagaa<br>atgcaatggttttgaaaagca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	172700248	172700559	1001307	0	+	pAlu5-172635719; RIP_Alu_chr5_172_01	NA	NA	SINE	Alu	Yg6	cataatcaacagtcggcctcataagacaccgtaggctctcgatagctgggtgaaggcaggaaggcagctcggctccactaagacatctagggccccaggc<br>tcctcctatcttgttggtcaccagcctgtgtgatgggagaaagagagatagttgagggtaggcaatttcctttccaggaagagatgtgggaatcagacac<br>atcaagtcttctcactgtcattggtgaggacttggtcagggaccacccctaactgcaaagaggtctgggaaatgtaatctctgctggggcagccaggatg<br>cagcctggggttttattattaaaaagaaggggaaaatgagactgggggaaaatgaaagtcttcggccacggggacttttaaaataa<font color="green"><u>AAGAAGGGCTAGAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACG<br>GTGAAACCCCGTCTCTACTAAAAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGGCAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAGGGCTAGAA</u></font>attgttgactgtaccagactatcttgcagtcttttattttagctaaactcatacaactctgttactatgggaat<br>aattgaaatgctatagtagtaatggtattattataatagcattatctctgttttcctgtagttatcactcaataaactgccttctctcaggtgagcactc<br>agttgtaacatccaattattcgatttggcagtttgtcaaatgacatccctgtcatatactttcttaggtgctgggtgcttacaaaaagggcaaaggatag<br>agccgctgctccccagacgactcaaaatgactttcatgtggaacacaggaggagtgagaagggcctcccatttatttaccatctactaagacgttgtgtc<br>cctgtcacgtac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	177381365	177381659	1001308	0	-	pAlu5-177449513; RIP_Alu_chr5_177_02	NA	NA	SINE	Alu	Yb3a1	aggtgtggtctcctttagtaggtattacccaggggttttccaaagtagttgtgctattttacattcccaatagtatatgaagtttcagttactccacatt<br>cttgcccaaacttggtatcaacagtgtttttaattttagccattctggtaggtgtaatattgatttctcactgtggtttaaatttgatggcttatgaggc<br>tgagcatgttttaaatgctttttggccatttggatgttcatttgctctttcctctccctccttccctccctcctccctccctcccccctcctccctccct<br>ttcttctttcccttttgtgtccctcttcatttctttcacccattgtcctattggtctgccagcttttttcttaattttttaaaaaatttat<font color="green"><u>TTTACTTTA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCATGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAGGCAGAGCTTCCAATGAGCTGAGATCACGCCACTGCAATCCACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTAC<br>TTTA</u></font>agttctgggatacatgtacagaacgtgcaggtttgttacataggtaaacatgtgccatggtggtttgctgcacttatcaacccatcacctaggtat<br>taagcccccgcatgcatttttattaacttacaggaattctctttatactctacatgtaatttatcttttcaccctcctccattccccacctctttttttt<br>aagagacagagtctcaccctgtcacccaggctgcagtgcagtggcacaatcatggctcactgcagcctcagcctcccaggctcaagtgttcctcctgcct<br>cagcctcccaagtatctgggaccacaggcatgcaccaccatgcccagccaatttttcattttttgtagagacgaggtcttgctaagctgctcagg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	57923181	57923343	1001309	0	+	pAlu5-57893600; RIP_Alu_chr5_057_01	NA	NA	SINE	Alu	Yb8	atcacctggattgctctcaccaaccactggtaaattttaatatgcccaagtgcagtgagctgtgttgttgaggtgtttcctggtgttttggagccatcta<br>tgcatttaaatagagtcatcaactgcacaggaaaggcaaaaccatacagcttatttattaaatgctcataaaattgatgccctgccctagagcaaaacaa<br>ttataaatcactggatccacagagagctgtaattcacctattgggatatgatttcctcaggatattgcctactgatgtcagcagcttctggtctaagatg<br>tgagctgtgtccatgccaccaggtcacctgtagttatttttctattgattcatttacagttatactgaactgaccagtttttctggcatt<font color="green"><u>AAACACAGCT<br></u></font><font color="red">ACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGAC<br>AGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACACAGCT</u></font>taaattcggtgcaaattaagcatttaa<br>ttaccccatatttatttttcaagccagacttaagaaaaaagtacagcatttttctagttggatagtacttattttcagtagtaggcatattcttcttttt<br>ccttgtgcttttactttcctaacactaattttgctagtcctgaacattgccactgtggcagctaaacagcgagataagagatagcaaatgtgagcatcac<br>ttgatacaaatcactttgctgaaggtgctgatgcatatgaagggaaggaaagcaaggtctccatcttgttttactatctctggagcaactaaatcaattt<br>aaaaatgtttacaaagcatcggggccaggcgcaaaggctcacgcatgtaatcctagcacattg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RAB3C:NM:138453:2/5	
0	chr6	9075297	9075608	1001310	0	-	pAlu6-9065197; RIP_Alu_chr6_009_03	NA	NA	SINE	Alu	Yg6	caatgcctgaaactttcccagagttggtccccaaaaagtacataaagctaaagattcaagaagctgagaaaatctctcaaataggataaatccacagaaa<br>tcgagatcaagagatatatcactgtaaaacttttgaaaagaaaaggaaaaagtcttgagggcactcaaaggaggagaaaaaagaaaaaaggaaggaagga<br>aaagaagaaagggagggaaggaagagaaaagaggaaggaaggtagagagaaaaaaacgggagggagggagtgttgggagaaggaagacagcagagatctc<br>atcagataccacagaagtcagaaggaaatgacacacatttttcaagtgctgaaagaaaagaattgtcaactcaaagttctatgtcaatt<font color="green"><u>AAAAATATCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAT</u></font>aggaatgaaggagaaatcaatgcactctgtaatacaataacctttaaaatatgtaaaatgtatataatagtatatattttca<br>ctgaatcataaaagtaagtatgtgacatttttgctttgccctggtaaaggcatcattaaactgcaaatacttcattattcttaatctttaaaataactat<br>tattgctttttaaaattattaaaaatatttcattaatgacatataactaatggttatgcttttccttgatcttttaaattacatacactgagagctgttt<br>cgtgtaacacactaacacttctctgtgatagtacagatacaaacatgctatttataaaagttaaaattttcagattttttttcaagaaatttggatactt<br>tgtgaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	11556107	11556412	1001311	0	+	pAlu6-11618553; RIP_Alu_chr6_011_01	NA	NA	SINE	Alu	Y	attatttttgaaaaattttcagcatctttcccttcaaatatcttttcttctccattgtctctttcttattctggactccaattacatatatgttaaacca<br>tttgaaattgtgccatatctttttttctaaacttctagcattttcatttggctctcagaatttccatctctactgaaattcccaatctgttcatgtgtgt<br>tgtctgcttcttccactagagactttaacatattaacaataattattataaagtctctgtctggttattctacaaactgggccatctctgactctggttc<br>tgtagattgctttatctctcaacagtgagttgtttttcctgtttttgagtgcttcttttaattttttgattgaaaaagtctcacta<font color="green"><u>AAGACTGAGGTACA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGACTGAGGTACA</u></font>tcgtgtttatgtctggagatggtctgttgcttccgttagaccaatagtgagaattgatttaatctacttaggagttgagc<br>tgaatttgaattttgttgttgtggttaccttcagtgcactgcacgcttcacattctgtaaggttgctgttgttgccttgtgcttagggtgggagctctgt<br>actgcagggttattctcagtggcaatgctccattgtagcttttagccatttcttcacaactatgcctcaaaaggggtctctctccacacactagcctccc<br>cccagtggtggaatgctgatgcttgttacttgctgctaggctcctgaggggagctgtcctgtttctgtgttaggcatgctctgtgtatggggatctcagg<br>aggtgg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMEM170B:NM:001100829:1/3	
0	chr6	23686003	23686314	1001312	0	+	pAlu6-23748441; RIP_Alu_chr6_023_02	NA	NA	SINE	Alu	Yb7	cttgcattttgtaatatggatggcctttactccagttttcaataatttattcctcatttccatctgataccccaacagaatggccttcacggtccatatt<br>tctaccaacattctggtgacaaatcacttacgtaatctctaagaagttccttactttccctacagcttttcttttcttctgaggtctcaccagaatcacc<br>cctaatgctccatctatggcaatgcaggcttttcctagcacactgttccaaactcttctagactctacccattacccagctccaaagctgcttcttcatg<br>ttcagttatttggtatagcaacagctctacttctgggattgttttgtgctgcaagagcagaatacctgagactgggtaatttatt<font color="green"><u>AAAAAAAAAACAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAC</font><font color="green"><u>AAAAAAAAAACAGGA</u></font>atttatttcctcacagttcttgggactgagatgtcaggatggagaggctagcttctccatcttgaaggccttc<br>ttactgcatcatcccataatggaagggcaaagagagagagagagagcaacagggtgtcaaagtcatccttatataaggaacccgctctcacaataatgag<br>cccacctccacaataatggcataaatctattcattagggtggtgccctcatgatccaaacaccacctgttaggttttacttcccaacacgtacacattgg<br>ggatcgagtttccaacacataaactttggggaacatattcaaaccatagtatgatcttagcaaactcatccctgttctacctgttccagacaaggaataa<br>ttgaagtataaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	29998496	29998497	1001313	0	+	pAlu6-30058815;AluyHJ;1104685373436; RIP_Alu_chr6_030_01	AAGAAACCCATAACTCACTTG;NA	TGTGTCCAGGTTAAACTTCAG;NA	SINE	Alu	Yb7	tcagcgtgtagttttttgttgttgtatccttccctggttttgataacaaggtaatgcttgcttcctagaataaatttgaaagaactccttcccccttcaa<br>ttttttggaatagtttcagatgaattggtgtcagtctctctttaaatgtttggtggaactgaacaatgaaggcatccagtactgggcttttctttgttgg<br>gagactttttattcctgattcaagctcattactcattattggtatgctcaggtttttaatttcttcttggttcattcttggtatattttatgtgtccagg<br>ttaaacttcagttgcctttataatctaatgagagctatggaccaaaattttgggtaaagcactttccgtggcagttagattttttaaaaa<font color="green"><u>AACTTCTTTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTACGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACTTCTTTC</u></font>attgcccccaccttttttgttgttgttgtttcaagtgagttatgggtttctttttaactgaa<br>ttgtataagcaaaatatctccaagtagccttgaattagtaacaaatcaatcttttgtttaccagtcttgtttgcttaattagcaaatgtggggagggaag<br>aattttagctgtttttttttcttcacctttttctttttggcttttgcatggcacaaaaaacaaaatttttctgttgaacagggataccttctattattgc<br>tctgagatcaagattttgacctatttggtctgagagcctaacttttataaacatttatttttttttcttttatgttactaatttttcaattaagtgtttc<br>attattgtacacagttgttagggaaacc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 and HLA-B57 haplotypes.Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID: 15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK.Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the northeastern Thais.Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID: 15996165</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	68;NA	501;NA	173;NA	MHC related;NA	intergenic
0	chr6	41404077	41404383	1001314	0	-	pAlu6-41405388; RIP_Alu_chr6_041_01	NA	NA	SINE	Alu	Ye5	ggtgagctgagatagcgccattgcactgcagcctgggcaacaagagtgaaactccgtctcaaaaaaaaaaaaaagaaaccgataaccataatagctgaca<br>aaacctgcgctgtttggctcagcatcatgaacgcttgttataacaccctgcatggagtgggtgcttggggagggtcggtggtgccactgtgaggagatac<br>ctggtcttcaggctggcagcaagcagaggcctgggaaacctcagtgcagcagtgtgaccaagaaagaacgaaagagtccggcaggagtgaggagcagttg<br>ccagaacatgtgagcaaccaagaacacctttagaggaggtaagtgggaccaagttttattttaatgttttaacatttttactct<font color="green"><u>AGAAATTTCAAGCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGAAATTTCAAGCATA</u></font>tactaaagtagacagaacagtatacacagtccctatgcatcccatcacccagcctcaacatagagcaattcatggtc<br>aatcttgtttcttcttcttcttctttttttttttttgagacagagtctcgctctgttgcccaggctggagtacaatggcgcgatgtgggctcaccgcaac<br>ttctgcctcttgggttcaagcgattctcctgcctcagcctcccaagtaggtgggattacaggcgtgtgacaccacgcccagctaattttttttgtatttc<br>tagtacagatggggttttgccatgttggccaggctggtcttgaactcctgacctcatgatccgcctgcctcagcctccccaagtgctgggattacaggtg<br>tgagcca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	41953365	41953665	1001315	0	-	pAlu6-41954677; RIP_Alu_chr6_042_01	NA	NA	SINE	Alu	Ya5	ttctgatgacattttttacagaaatagaaaaaacaatcctgaaattcatatgaaaccacaaaagatcatgaatagccaaaacaatcttgagcaaaaagaa<br>caaagctggaggcatctcactacctaaattccaaatatactgtaaagctatagcaatcaaaatagcatggtactggcataacaatagacatatagaccaa<br>cggaacagaatagggaacccagaaataagtccacacatttatggtcaattgatcttaaacagagctggcatgtatgcacactggggataggacaatctct<br>tcaataaatggttttgggaaaactgcatatccacatgcagaagaatgaaatcggacctttatcttagaccacctcaaaatagatta<font color="green"><u>AAGACTTAAACTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGACTTAAACTGG</u></font>ccaggcatggtggctcacgcctgtaatcccagcactctgggaggccgaggcgggtggattacctaaggtcaggagtccgagacca<br>gcctggccaacatggtgaaaccccgtctctattaaaaatacacaaaattagccaggtgtggtggtggacacctgtaattccagctgctcggaaggctgag<br>gtaggagaatctcttggacccgggaggcggaggttgcagtgagctgagatcaagccattgcactccagcctgggcaacaagaacgaaactccatctcaaa<br>aaaaaaaaaaaaaaaaaaaaaaagacttgaactgagacctgaaactgtaaaactactggaagaaaacttagggagaaagcttcttgacattggcctgggc<br>a	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCND3:NM:001136017:1/5	
0	chr6	109860128	109860183	1001316	0	-	pAlu6-52728751; RIP_Alu_chr6_139_01	NA	NA	SINE	Alu	Ya5	atacagcacactgatgggtcttgactctatccagtttgccagtctgtgtcttttaattggagcatttagcccatttacatttaaggttaatattattatg<br>tgtgaatttgatcctgtcattatgttagctggttattttgctcattagttgatgcattttcttcctagcctcgatgatctttataatttggcatgatttt<br>gcagtggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatctctcagcatatgttt<br>ttctgtgaaggattttatttctccttcacttatgaagcttagtgtggctggatatgaaattctgggttgaaagttcttttctttaag<font color="green"><u>AATGTTGAATATT<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTTGGGGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCAGTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AATG<br>TTGAATATT</u></font>ggcccccactctcttctggcttgtagagtttctgcagagagatcagctgttagtctgatgggcttccctttgtggataacccaacctttct<br>ctctggctgcccttaatattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcaaggagtatctttgtggcgt<br>tctctgtatttcctgaatctgaatgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattc<br>tccccgtcactttcaggcacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcatttctttttattctt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:AKD1:NM:001145128:27/41	
0	chr6	88320258	88320570	1001317	0	-	pAlu6-88270309; RIP_Alu_chr6_088_01	NA	NA	SINE	Alu	Yb7	caagtcctaggatctgggctgggtgcgatggttcatgtctgtaatcccagcacgttgggagactgaggagggcagatctcttgaggccaagagtttgaga<br>ccagcctgggcaacacggcaaaaccccatctctacaaaaaatacaaaaattagccgggcatggtggtgtgtgcctatagtcctagctacttggggacctg<br>agaagggaggactgcttaagcccaggaggtggagggtgcagtgagccaagatcatgtcactgcgctctagcctgggtgacagagccagaccctgtctcaa<br>aaaaaaaaaaaaaaaaaagaaaagtcctaatatatagaactcttagaatcaatgaaggaaaaaagatcctatcaaagtagaaatt<font color="green"><u>TAAAGTATATTAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>AAATAAAAAAAAA</font><font color="green"><u>TAAAGTATATTAGTA</u></font>aattagctgggtgtggtggctcatgtctgtaatcctagcactttgggaggccccaaagagcactaaggaagg<br>cagatcacctgaggtcaggagtttgagaccagcctggctaatatggtgaaaccctgtctctactaaaaatacaaaaattagctaggcgtggcagcgggca<br>cctgtaatcccagctacttgggaggctgaggcatgagaactgcttgaacccgggaggcggaggtggcagggagttgagaaggcgccactgcactccagcc<br>tgggggacagagcgagactctgtctccaaaaataaaaataaaaataaagtatactagtaaattatttaacacaatatatagctttaggcaaatgtagcta<br>taactattaaaac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ORC3L:NM:181837:7/20	
0	chr6	114755512	114755823	1001318	0	-	pAlu6-114755536; RIP_Alu_chr6_163_02	NA	NA	SINE	Alu	Y	atggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctatcaatggtttcttcacagaattggaaaaaactaaagttcatatgga<br>accaaaaaagagcccgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatactacaaggctacagt<br>aaccaaaacagcatggtactggtaccaaaacagagatgtagatcaatggaatggaacagagccctcggaaataacgccacatatctacaactgtctgatc<br>tttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgt<font color="green"><u>AGAAAGCTGAAACTGG<br></u></font><font color="red">GGCTGGGCATGGTGGCTCAACCCTGTAATTCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGCCGGGCACGGTGGCAGACACCTGTAGTCCCAGCTATTCGGGAGACTGAGGCAGGAGAATGGT<br>GTGAACCCGGTAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAGCTGAAACTGG</u></font>atcccttccttataccttatacaaaaattaattcaacatggattaaagacttaaatgttagacctaaaaccataaaaa<br>ccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacagcaaaagcaatggcaacaaaagccaaaattga<br>caaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacagacaacctacagaatgggagaaaatttgtgcaacc<br>tactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggtgactcaaaagaa<br>gacatt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	163263931	163263932	1001319	0	-	pAlu6-117139445; RIP_Alu_chr6_163_03	NA	NA	SINE	Alu	Ya5	caaagcctccaagaaatatgagactatgtgaaaagaccaaatctatgtctgatcggtgtacctgaaagtgatggggagaatggaaccaagttggaaaaca<br>ctctgcaggatattatccgggagaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgaa<br>aagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaagaaaaaatgttaagggcagccagagagaaaggtcgggttaccctcaaa<br>gggaagcccatcagactaacagcggatctctcagcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaa<font color="green"><u>AAGAATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTTC</u></font>aacccagaatttcatatccagccaaactaagcttcataagcaaaggagaaataaaatactttacagacaagcaa<br>atgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagcgctaaacatggaagggaacaatgggtaccagccgctgcaaaatc<br>atgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaactaacgaacaaaataaccagctatcattataatgacaggatcaaattcacacat<br>aacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcagattggataaagagtcaagactcatcagtgtgctgtatt<br>caggaaacccatctca	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PACRG:NM:152410:3/7	
0	chr6	159652128	159652425	1001320	0	+	Yb8AC880;pAlu6-159485453; RIP_Alu_chr6_159_01	ACAAGAAGGAGGAAGCAGGTAAG	CATGAATACACCTGGTGCAAAT	SINE	Alu	Yb8	gttttcttttctacttcctcacatttatgctggatattggcggcttttccttcattatgtgctatgaagacccatggtagactgcaatattagacaattt<br>tgtcatggaaaaatctgtgaaatggatgacatttgcccctccggcactctcactgcaatataggttcctctcccctatagaatctcttccctcagtcagt<br>ctgctctgaagacagggtgattacagtacatttaatatactgtttgcctatcccaggagttttttttttattttaagccttattttagaattataaatgt<br>gtccactattaatggaattttaaacaagaaggaggaagcaggtaaggacatgctatgggaagagggaaatttttgtactgcctt<font color="green"><u>AAAAATTACAAATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAA<br>AATTACAAATTGG</u></font>ttgctcgtcacacattccccatcactttgagtatagattattcagcaatttgcaccaggtgtattcatgtttcttgtctattaagga<br>cagctataatgcatttgtaatacactgacaattagttttattaagaaaatcctatataagattttgcatttataaaataaatgagttacttcaaagtact<br>catttcagaatttcttcaaataataagatgtggcataacctggttcaatagagattcaattcacttatattttctaggactatatttgttacttaaagca<br>aaatataagttttaaaaagaatgctatcgttgagaaaacacgtttccagtgttctaaggaattagaagttagccattatgactactgatttgaaatgcct<br>	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	459	146	NA	intron:FNDC1:NM:032532:10/23
0	chr6	6277356	6277602	1001321	0	+	pAlu6-6267254; RIP_Alu_chr6_006_01	NA	NA	SINE	Alu	Ya5a2	taaaattggcattccagaagatgaggattaaacaatagtgtgtgtgaagggcatttcataaactgaacaaattattattctccgtattatatggtgtctg<br>atggctataatagcaaagaaatcttactaaacttattttatttttatttctgagcataaccacacaggtagtgaataaggtgtgagaactaaaagtaaaa<br>tcttatccccaccccactcccaaccaactgtacagactctttcttggctaaggggaccccagagaaaccttaaaaactgagccgcagccatgatgggatg<br>ggaggtggtacacacctcactatattccctttccttttgctgtttagacaaaattgaacagaatcaatgttaaaatagagatcat<font color="green"><u>AAGACTGACACTGTG<br></u></font><font color="red">CAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAG<br>CTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGC<br>GAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTGACACTGTG</u></font>gcaataaaatatataattataaacaagacccaaggcca<br>caccaggcaaggattaagtcatgaacccctgcatttaaagaataaactatgttctaactgccacaaagtttttctttttgtctagcagctaaacaagccc<br>tggtctcaagatgagcaatgttggaacaactacagttcatccatcaccagatgctgactaactaactcacattccaccagccacaactacagttttgatt<br>gcgtaagagactgatttcagcatctttctcctggtaagagactatcaaccatggactggttctggacgatttaccgaagctgcacactacaatgcattcc<br>tgtccctgcttcaccttttgatgtatagggcctaactgaagcacata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:F13A1:NM:000129:3/15	
0	chr6	17472284	17472582	1001322	0	+	pAlu6-17534722; RIP_Alu_chr6_017_01	TACCTCGATAGTCTCACTTC	GTGTTGGTAGTGAAGAGAGCCAAC	SINE	Alu	Ya5	aaacccgtctctactaaaaatacaaaaatttagccaggcatagtggcgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaa<br>cccgggaggtggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagccagactccgtctcaaaaaaaaaaaaaaaggtttca<br>ttctttgtatcacgcttagttatgtttcagtttagccatttagccgtggtatttcccagtggtctggattgacagtttcaggaaggagtagcaccttaga<br>atctaaaccagtgactcactttatgagcttttccaaattacctcgatagtctcacttcataaatatgcgtaagtttctgctctgtt<font color="green"><u>AATAGTGCTGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>ATAGTGCTGAATGGG</u></font>ggttggctctcttcactaccaacacaaaagcacccaaaggcaatatatgcttttaatttctggagaagtgtattagtttaagttc<br>aactaaaatatctgcttaaatataatttatgtagtataggtaaaaaccaattgcattctgatacttacaagattgcttttatgtaaacagcagctttctg<br>agtagcagaaggtggagaagtgaggcaaaaagaaggcttttttccttttcctatgagccttccaatggcaagagaattaccttggtaattacatggtggc<br>tagcatgtgacggctactgcccgtgctggatgtagatgctggttaacacacaataaaacaccaaggaaggaaggagaggcaggggtttgtgtgatatcat<br>c	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	400	102	NA	intron:CAP2:NM:006366:4/13
0	chr6	68260201	68260505	1001323	0	-	pAlu6-68210256; RIP_Alu_chr6_068_01	NA	NA	SINE	Alu	Yb3a1	tagttctagatccttggggaattgccatactgtcctcgacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttcttcacat<br>cctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatgg<br>ccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcatgatcaagtgggcttcatcccggggatgcaaggctggttcaacatatgca<br>aatcaataaacgtaatccagcatataaatagaaccaaagaggaaaaccacatgattatctcaatcgatgcagaaaaggcctttgacaa<font color="green"><u>AATTCAACAGCC<br></u></font><font color="red">CTGTCCAGGCGCAGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTCAGGAGATCAAGACAATCCTGGCCAACAT<br>GGTGAAGCCCCATCTCTACTAAAAATACAAAAAAATTAGCTGGGTGTGATGGCAGGCACCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGAAGAATGG<br>CATGAATCCAGGAGGCAGAGTTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCAGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATTCAACAGCC</u></font>tttcatgctaaaaactctcaatatattaggtattgatgggatgtatctcaaaataataagagctatttatgacaaacccacag<br>ccaatatcatactgaatgggcaaaaactggaaacattcgctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgtt<br>ggaaattctggccagggcaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgatt<br>ttatatttagaaaaccccatcatctcagcccagaatatccttaagctgtattagttttaccttaaattaaaatatactactagagcaaattacttttaga<br>caaag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	77920121	77920413	1001324	0	+	pAlu6-77870174; RIP_Alu_chr6_077_01	NA	NA	SINE	Alu	Ya5	aatgtgattactccagtattgttccttttgctcaggatggctttggatattctgggtcttttgtagttccacttaaattttaggatttttttctatgtct<br>gtgaaaaatgtcattgatatttggaagggattgcattgagtctgtagattactttgggtaatgtagacattttaccaatgttgattcttccaatccacaa<br>acatagaatagttttccattttttcgtgtctgcttcaatttctggtatcaactttatagttttcattgtagataactttccctcctttgatttagtttat<br>cgctaggtatgtgttttttttactttgtaaatggaattactttcttaattcctttttgggttgtttgctgctggaacataaa<font color="green"><u>AATGCTACTGATTTTTGT<br></u></font><font color="red">GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGCTA<br>CTGATTTTTGT</u></font>atgctgattttgtatcctgcatttttattgaatttgtttaccagtccaaatacttttttggtggagtctttagatttttcagcagtaac<br>atttttgtgtgtatatttctatcccaaatcaatttattactacgacgttatgctttttggtatttcttttttaaaagagcagttaatggatgttgtagaa<br>aagcaaagctcaatttcaccttccatttttaaaataaaggcataaaatcattgtcctgtgattgattgttcacaccttttagtttcaacttttagttttc<br>ttaaaatttttgatacaagatatttaattgcaacatagttgaaacatttagcatggcaccaagaagtttatttgtttattttttcatttgttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	107124533	107124834	1001325	0	+	pAlu6-107124562; RIP_Alu_chr6_107_03	NA	NA	SINE	Alu	Yb7	ggctggtcttgaactcctggcctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccggcctcaacacatttt<br>caatagaatcatggtaatcattagttttgttagtcaaatatttccagttctctccagtttcagaccctcttatggttaggtgggatcttgtgtttagttc<br>caaccaatgcatcgtaagtggaagtgtcatgtatctgggccagagtttgctaggttgatatcctctagggttttcttctccctccagcaatgttcaaaat<br>ggtggccgctctatcagcccaagtccctgagtgacttaagtgtcagagagctctgtcaacctaatggatgggtagcacaagcaaaaaat<font color="green"><u>AAAACTTTTTC<br></u></font><font color="red">GGCCGGGCGCCGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AA</font><font color="green"><u>AAAACTTTTTC</u></font>cacttttgttgttttaagctgctgaattttggggtggaatgttagtgaagcataacatggcccatcctgagcatctaccagtcactg<br>tctttccgacttttcattcactggtctgcttttcaaaccaacccaatagtaccatagatagttttgggttttttggggggtttttttgtttgttttttta<br>aatgaacatagaaattgacccttctggccttaaagcttgaaacttatatttgttttatctgagtccctttctcagtaaccaccttcaggcctctcaaaaa<br>aaagtttcaaagaactgaaactctccagatcaccatatccagacaatgagatgccagacccctcaggacccctcattcattgtgattgcttccttgcccc<br>tc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	18547956	18547957	1001326	0	-	pAlu6-107487595; RIP_Alu_chr6_018_01	NA	NA	SINE	Alu	Ya1	aggagttgataccattccttctgaaactattccaatgaatagaaaaagagggaatcctccctaactcattttatgaggccagcattatcctgataccaaa<br>gcctggtagagagacaacaaaaaaagagaattttagaccaatatccctgatgaacattgatgcaaaaatcctcaataaaatactggcaaaccaaatccag<br>cagcacatcaaaaagcttatccaccatgatcaagtgggcttcttccctgggatgcaaggctggttcaacatatgcaaatcaataaacataatccagcata<br>taaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgagaaaattcaacagccttcatgctaaa<font color="green"><u>AACTCTCAATAAA<br></u></font><font color="red">GGCCGGGCATGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGATAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCAGGAGACTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGAGTTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AACTCTCAATAAA</u></font>ttaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaactgg<br>aagcattcccgttggaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcagga<br>gaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcc<br>caaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaaagtgcaaaaatcacaagcattcttatacaccaataacagacaaa<br>	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	159666777	159667084	1001327	0	-	pAlu6-159500102; RIP_Alu_chr6_159_02	NA	NA	SINE	Alu	Ya1	aagcccctcacatgtgaactcccctgttcatcagtcttcattcctccacctcctccatcttgcttctggaatattctagaagagggtaatttcctacctc<br>ttctacatcccaacttggcaaactctaccaatgagagttccttgtgcttctccacttcctactgagttcccacccactctcactgactcaggagataaat<br>cagatttcttaatttgcataggaaatttggaaacatatgccaatcattgcaaatttccctttacagattgggctgtactaaccaatagatctattttgac<br>tacagaattatactttaaatgtaatataaaatttcagatgtgatttttggaaaagccaggaaaccctggttagaagaactattaa<font color="green"><u>AATTACCATAATGAC<br></u></font><font color="red">GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACCTGGT<br>GAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAAATTAGCCGGGCGTCGTGGTGGGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCAAGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATTACCATAATGAC</u></font>taaactgatattatgagcataagtaacatatgagtgatttaagaaaggtgagtgatttaagcataaaaggcatcttc<br>acctccattatcagggtagtttaagcagaagtcttttgggaaagatgtgatggaattgattatactatttctctacttgggagatacagatgtagctgta<br>aaaaggagaacatctcactgtagctgataaaatcttgaggcaaaaggttttatagctaaaaaaaaaattgtaggaattcctttcctccctttgacctgaa<br>gcccacagcaattaaatagaactctctaaacttaatgcaccctcaaaagggggcaaggtggggaaaacaggaagaagtgactagtggatgatttcccaga<br>tgtcttct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FNDC1:NM:032532:14/23	
0	chr6	160981933	160982205	1001328	0	-	pAlu6-160815263; RIP_Alu_chr6_160_01	NA	NA	SINE	Alu	Yb3a1	atatggaatagaaaaagggcctgtatatccaagacaacctaagcaaaaagaacaaagctggaggcatcatgctatctgacttcaaaatatactacaaggc<br>tacagtaacaaaaacagcatggtatggtactggtaccaaaacagatatatagaccaatagaacagaacagaggcctcagaaataacaccacacatctaca<br>actattggatctttgacaaactggacaaaaataagcaatggggaaaggattccctatttaataaatggtgttgggaaaactggctagccatatgcagaaa<br>actgaaactggatcccttccttacaccttatacacaaattaactcaagatagattaaagaattaaatgtaagacctaaaaccataaa<font color="green"><u>AACCCTAGAAGAC<br></u></font><font color="red">ACTTTGGGAGGCCGAGGTGGATGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACAGTGAAAGCCCATCTCTACTAAAAATACAAAAAATTA<br>GCTGGGTGTGGTCGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAGCTGAGGAGGTTGAGCTTGCAGCAAGCCAAGAT<br>TGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCAAAAAAACAAAAACAAAAACAAAAAATCA</font><font color="green"><u>AACCCTAGAAGA</u></font>aacataggcaatacc<br>attcaggacataggcatgggagaagacttcatgactaaaacagcaaaaccaatggcaacaaaagccaaaatttacaaatcagatctaattaaaataaaga<br>gcttctgcacagcaaaaaactctcatcagagtgaaaaagcaacctatggagaaaaattctgtggtctagccatctgacaaagggctaatgtttagaatgt<br>acaagcaacttaaacaaatgtacaagaaaaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctgacaggaagacctttatgtg<br>gctgacaaacatgaaaaaagctcatcatcactgttaattagagaaatgcaaatcgaaaccacaatgagatac	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LPA:NM:005577:29/40	
0	chr6	171014846	171015145	1001329	0	+	pAlu6-170690219; RIP_Alu_chr6_170_01	NA	NA	SINE	Alu	Sg	cagtaaaatatttgaagagatgtattctgagccaaatatgagtgaccacggcccttgccatagccctcaggaggtcctgagaacatgtgtccaaggtggt<br>cggggtacagcttggttttatgcattttagaaaggcatgagacatcgatcaagtacatttaagaaatacactggtttggtccagaaaggtgggaccaaag<br>caggaggagaggggcgcttccaggctataggtaaatttcagtgagtttgtctaaagacctgggatccatagaaaggaaattttcaagttaagataaaaga<br>tggtggagaccaaggttcttttgaagtcttatagaggctgtcctcagagacaatagatggcaaatgtttcctattcagatctttaaaag<font color="green"><u>GTGCTAGACTT<br></u></font><font color="red">GGCCAGGCACGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCCAGGTGGGTGTGGATCACAAGGGCAGGAGTTTGAGACCATCCTGGCCAATGT<br>GGTGAAACCTCATTTCTACTAAAAATATAAAAATTAGCTGTGTGTGGTGGCGGGCGTCTGTAGTCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCGCT<br>TGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGTCACTGCACTCCAGCCTGGGCGACAGACTGAGACTCCGTCTCAAACAAAAAAAAAACAAA<br></font><font color="green"><u>GTGCTAGACTT</u></font>tcagttaatctctttaggattgggagggcctggaagaaaaatatctagctatgttaatagagattctttacagatacaaattttccccc<br>acaaaggacagctttgcagggccatttcaagatatggacaaaaaagcctatgttttggggtaaaatattttgattttcttccttgtctcataatgttatg<br>acagagtcaggttggaaagtaagtcacaatatatagggttaaataaaatccatctgatgagaatttatggtttgtaggacatcactccccagacccttta<br>gatagggaatttgggtaagataaaaaaaaaaaaagtcagagcttagtcttcacttgcaagggtgcccctgtcttcctccactctccatccccaagctggg<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	16936301	16936626	1001330	0	+	pAlu7-16646537; RIP_Alu_chr7_016_01	NA	NA	SINE	Alu	Ya4b	tgagcatggaatgttttcccatttgtttgtttcctctgatttctttgagcagtggtttgtagttcttgaagaggtccttcacttcctttgttagctgtat<br>tcctaggtattttattctttttgtagcaattgtgcatgggagttcattcatgattttgctgtctgcttgcttgttgttgatgtatagaaatgctagtaat<br>ttttgcacatagattttatatcctgagacttcgcttaagttacttatcagcttaagaagcttttggggttttctagatatagggtcatgtcatctgcaaa<br>caaggataatttgacttccttaattcctatttgaacacactttatcttttctcttccctggccagaactttcaatactatgttgaat<font color="green"><u>AGAAGTGATGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTGATGAGAG</u></font>gagggcatccttgtcttatgtcgattttcaaggggaatgcttccagctattgcccattca<br>gtatgatattggctatgagcttgtcaataatggatcttattattttgatgtgtgttccttcaatacctagtttattgagagttttaaacataaagggatg<br>ctcaattttattgatggccttttctgcatctattgaaataatcatgtggtttttatctttagctctatttatgtgatgaattacgtttattgatttgtat<br>atgttgaactaaccttgcatcccagggatgaggtcaacttgatcatgatgtttaagctttttgatatgctgtggattcagtttaccagtatgctattgac<br>aatttttgcatcaatgttcatcaaggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	27783389	27783723	1001331	0	-	pAlu7-27491577; RIP_Alu_chr7_027_02	NA	NA	SINE	Alu	Yb7	ggtaattttgttatgtgtgataatataattatggtgattctgtgtttttctagtctttatcatttaaagatactaaactaggccgggtgcggtggctcac<br>gcctgtaatcccagcactttgggaggccgaggcgggcggatcacgagttcaggagatcgagaccatcctggctaacacggtgaaaacccatctctactaa<br>aaatacaaaaaattagccgggcgaggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccctggggggcggagcc<br>tgcagtgagctgagatcacgccattgcactccagcctgggtgacagcgagactccgtctcaaaaataaaaaataaataaaaataaaa<font color="green"><u>AATAAAGATACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATAAAGATACTA</u></font>aactaactgtaagtgaaatgtcttgatgtctaagatttgctttaaaaactcc<br>aggggaaaaaattaatgttagagggggtaataaaacaagattagtaaagtgtcggttcattttactgttcattctcctttgtgtatgtttgaaaatttct<br>gtaatagtaaaaccaaagcaaataaagaaatgaaacagattagtaacactccacatatgacccactgtagcagaaacactgcattttagaatatgaacgc<br>tttgtacccttagaagtgttgtaattcaggtaatggttgatagagttactgaaagtttttcacatcttcagctaaaaaacctttagaattatctccaaac<br>tttaatccgataggacacacaaacatatgaaagga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TAX1BP1:NM:006024:1/17	
0	chr7	47895192	47895497	1001332	0	+	pAlu7-47601872; RIP_Alu_chr7_047_02	NA	NA	SINE	Alu	Ya5	ccttagccattgcctgttgatgggtcttctgctggagcaggtatagaggttgaggcccacaactccaccaatcttggggaacaaagaccatctcagagca<br>aatgacagcaagcaatggacttaagtgagaaaagcagcaaaccaaagtatcgtggtgctgctattacacttacataaaattatatgcctgatattagaag<br>ctagcatacaaaaataaaccagttttactagtcaggatggcaggattggagtgaatattatgcttcatttgcatcattcttattaaaattaataatttct<br>aaagtattttgaagtattttttattttaaaagctaatgcaaaagaaatatctgctcattgtagataatcaggaaggtat<font color="green"><u>AGAAAAGTATATGCAAGAGTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTATAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAAGTATATGCAAGAGTG</u></font>aagaatagctattctatagtcccattgctcatagaaatcatatttcaggatgttgagtatcaaattttgctat<br>gtaatagagtacatatttggcagacaatttagttgtctatatgtatatctatatatttttttgacacagagtcttgctctgtcgcccaggctggagtgca<br>gtggtgtgatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacgtgccacca<br>cactcggctaatttttgtatttttagtagagacgggtgtttcaccatgttggtcaggttggtctggaactcctgaccttaggtgatccactcgcctcggc<br>ctccca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PKD1L1:NM:138295:28/57	
0	chr7	104033041	104200524	1001333	0	-	pAlu7-86696097; RIP_Alu_chr7_131_01	NA	NA	SINE	Alu	Yb3a2	atactgtaaacacccctacataaataaactagaaaatctagaagaaatggataaattcctcaacacatacaccctcccaagactaaaccaggaagaagtt<br>gaatctctgaatagaccaataacgggctctgaaattaatagcttaccaaccaaaaaaagtccaggaccagacagaatcacagccgaattctaccagaggt<br>acaaggaggaactggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgat<br>accaaagcctggcagagtcacaacaaaaaaagagaattttagaccaatatccctgacgaacatcaatgcaaaaatcctcaataa<font color="green"><u>AATACTGGCAAACCGT<br></u></font><font color="red">GGGCGCGGTGGCTCACGCCTATAATCGCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAAGAGATCAAGACCATCCTGGCTAACATGGTGAA<br>ACCCTGTCTCTACTAAAAATACAAAAACTAGCCAGGCGTGGTGGTGGGGACCTGTAGTCTCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAGGCGCAGCTTGCAGTGAGCCCAGATAGCGCCACTACAGTCCGGCCTGGGCGAAACAGCGCAACTCCGTCTCAAAAAATAAATAAATAAAATAAAA<br>TAAAATAAAATAAAATAAAATAA</font><font color="green"><u>AATACTGGCAAACCGA</u></font>atccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcacccctgggatgc<br>aaggctggttcaacatacacaaatcaataaacgtaatacagcatataaacagaaccaaagaaaaaaaccacattattatctcaatagatgcagaaaaggc<br>ctttgacaaaattcaacagccattcatgctaaaaactctcaataaattaggtattgatgggaggtatctaaacataataagagctatttatgacaaaccc<br>atagccaatatcatactgaatgggaaaaactggaagcattccctttgaaaattggcacaagacaggatgccctctctcaccactcctattcaacatagtg<br>ttggaagttctggccagggcaat	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LHFPL3:NM:199000:1/3	
0	chr7	133107691	133108004	1001334	0	+	pAlu7-132510000; RIP_Alu_chr7_132_01	NA	NA	SINE	Alu	Yb10	tgcttaaattagatgggagccagtgaaattatagtcaaactgcatgaagctgattttagaaccacattttcttaaaatggaggttatgtaggttacatgt<br>tttactggctcatggagctcttcaaaatgacccagttcagaatgacattcaacttagagctgattgaaatgggcattggtggaaaatcccttggggattt<br>gtggagcaattaaaaataacctaggaatctaattctttttaataatagaaaaaaaatctgtagttagaattttagagaagtatgtgaaagttttatctta<br>ctacagaaattatgggaaatgcttactttttaaaaggagaaagggaaagaatctcatgttgaaaattgtcattaggtaaagt<font color="green"><u>AATAGAATTAATGGAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATAGAATTAATGGAGCA</u></font>atccaaaatgagctaaataagtttctttgtgagaattcttctagagattaattctagaattcttctag<br>agacttcataatatatggtaaaactaatattgctgcttagatattctgtgtcgtcttttgtcctcactttaggtaagcaatatgtacgccatagcactct<br>ctatcttactttacatcactttgctcatttggtgattgtgtaggtgtgagtatgtgcatgtgtgtagacttttgtcagtttccttcctgctaaattttaa<br>gctcattgaaagtaagaaccatgtgattagcttattattattatgtaccctgtacctagtgctgttcttggacataatagtgagaggtgacaacgtgcta<br>gcagccctcggtcg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EXOC4:NM:021807:7/18	
0	chr7	142860634	142860635	1001335	0	-	pAlu7-144624675; RIP_Alu_chr7_142_01	NA	NA	SINE	Alu	Yg6	atcctaaatatatatgcatccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccaaacaataataatga<br>aagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggaaatccaggaattgaactcagctctgcaccaagtggacct<br>aatagacatctacagaactctccaccccagatcaacagaatatacattcttctcagcaccacacaacacctattccaaaattgaccacatagttggaagt<br>aaggcactcttcagcaaatgtgaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggatt<font color="green"><u>AAGAAACTCACTC<br></u></font><font color="red">AAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCG<br>TGAATCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAATAAAATAAA<br>ATAAAAAAAAA</font><font color="green"><u>AAGAAACTCA</u></font>aaaactgctcaactacatggaaactgaacaacctgctgctgaatgactactgggtacatgacgaaatgaaggcagaaat<br>aaagattttcttcgaaaccaatgaaaacaaagacacaacataccagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaat<br>gtccacaagagaaagcaggaaagatctaaaattgacatcctaacatcacaattaaaagaactagagaagcaagaggaaacacattcaaaagctagcagaa<br>ggcaagaaataagtaagatcagagcagaactaaaggagatagagacacaaaacaacccttcaaaaaatcgatgaatccaagagctggttttttgaaaaga<br>tcaacaaa	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	154941933	154942244	1001336	0	+	pAlu7-154256716; RIP_Alu_chr7_154_01	NA	NA	SINE	Alu	Yb7	aattcaattaaataagtatttattgagcccttactatgtgcacagaggtctctgtccaagcttcatttgcaaatagattcatttgacaaagatgagaagt<br>ggacatgcaaactactctaatgtaaagaaaaaggaaataaacttgtatttgaataaataaatggtgtcttcacaaatctgtggccttagtcaaaagctct<br>tcacattctcacccaatcagatcaatccattctgcctctccacttatcaatcttatttatctataaaggtccagtaaaaacgttactatatcctgtgaac<br>agtctagttttgaattcatagacataaaatcttagcacctgaaggatacgtagaggtctggcctcacccttagtgttactgct<font color="green"><u>AAGAAAAGTGGGTGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAACCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACCCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAAAGTGGGTGCAA</u></font>ttgatggacacctccgggatggccagagacaaggccaggaggagcccaggcaccctcccttctgggtacca<br>ctcctctggggcttgagctctccgtggctttgttgtacgtttaccccttgaccccctgctgagattataagctctatatggcaggaattgcgacttggga<br>cttttgttccacctatgtggctttacatggagtaggacctcagtaaacatttttgcacagctttattgaagtataattggtgtatggtaaactgcacata<br>cctaaagtgcacctttgatgagttttgatgtatatttatgcacctatgacatcatccccacaattaagacaatgagcatctccatcagtaaacatttttt<br>gttcattgttgt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	77959653	77959960	1001337	0	+	pAlu7-77557801; RIP_Alu_chr7_077_01	NA	NA	SINE	Alu	Ye5	tatgaagtctaaaatgatttaaagaagcaagaggtgtctttaaatgttcaatgcagaatcattttgtctccaggatccaaagggtgaacatcctaagagt<br>tcataagatcttttcatgtatccattacttctagaatattatagctttaatttattgggagatagtcttatggagattcataatggctaccatttccgag<br>agattccatgtgccatgacctaagtattttatatataataacacatctggtgagatgtttggttaaactagactaagaaaagctttaaataattctgtaa<br>ggacaacataatcatagaagactctatgatgattacagcaaatcttctgcctccatagtaatccatgtcagactagtgctgcat<font color="green"><u>AGAAAGATTCCTTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAGATTCCTTCAC</u></font>ttatttaatcaacaagttgaatattttccatatacctggttatgaactaagccttggggatttattaacgatcaag<br>tcagacacaggttttgatctcaatgaacttattatagtcaggttggggaggcaggggctggcaaataagaatttccaattcagctgagggaggatcagat<br>aaaaataagcatctttcataaaaagcagattgtttcctgatgaaccaaaggctcagttcagagagacagagtagtacgaactgaacgaatctgacattgt<br>ctataagagtgcatatggtgcgtatacacgtgcatgtgtgtacacacatacacacaccatagaacacacacacaccacagaatactatgcagccataaaa<br>aatgatga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MAGI2:NM:012301:9/22	
0	chr7	82946478	82946780	1001338	0	+	pAlu7-82544626;Yb8NBC5; RIP_Alu_chr7_082_02	AAGGTCTAAGCGCAGTGGAA	TGTATGCAGGTTGCTTGCTC	SINE	Alu	Yg6	ccaaacaagtgatacaataactatgagattattattcttcctttcaggaaaaaaaaaaagaagcaatggcacgtaaacaaacttctccaatatgttaatc<br>tgagaaggagaaatgagaatctgggttggggaacaagtttgtctaaattcaaagcccaaatcagttctactaataaatagtgggattgagcattctaata<br>aaggatactcccgtgttccatcctggagattaatgcaagataaggcaggagaataaagcagatagcaatcatatttcatgtttgctattgataaaagcta<br>ataggaaatcttataagtatgtggctgtagtatggatttcaagactggaccccaagaagagtgtgtcatcccgtctatctgctag<font color="green"><u>AAGATCTGAACAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCTCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAGAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGATCTGAACAACC</u></font>atggccatccctctgaaagaccagtacctgtttctgcaacatttggagagaaaagcagaacagaataaaaattttctgcagg<br>aaatcagatccttaggagaatgggagggaagctatcggtgctaaggtaagtgcaaccagctcttgatcccagttttaccaatcagttaaataacttctta<br>atcagagatttattgaccaggcttgacctccccagagtaaagctacagtaagacagtaaactcactgtatgcaggttgcttgctccaagtctatcgcttc<br>tgcaaaaatatcttccttctgatcagtctacagagcccccagggtttttttttaatgtgttttgtacagagttcttaattgcagattgttttattagaat<br>ccc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	503	167	NA	intergenic
0	chr7	31070591	31070906	1001339	0	+	pAlu7-30778761; RIP_Alu_chr7_030_01	NA	NA	SINE	Alu	Yb7	ctcagtgcaatgagaagccatttgaggaactgacccagaagcgactctagaacaatgattctcaatcgggtgttatcctcgcaactcccagggattttta<br>gcaatgtcaacagagggtgagggtaggagtggtactggcagctggtgggtagaggccagggacactgctaaacattctgcgacgcacagggcagacagct<br>ctccactcccaacaaagaattatctgaacccaaatgtcagtaataccgaggttgagaaactctgctctagatgttggtgtcccccgggtccttgctcttt<br>tagaataacccagggtcactgtactccagcctgtggctctttctatatatactctgggttcaaattttatcttcaccgcttgtccaa<font color="green"><u>AATGTCAACGGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATGTCAACGGTG</u></font>cagaggttgagaaactactgtacaggaagaagggaagcagcacaactacttagacctgtgctgaatgcagt<br>agccactggccacatgtggcttttgaatacctgaagtggtcgggcgtggtggctcatgtctgtaatcccagcactttgggaggccgaggtgggtggatta<br>tttgaggtcaggagtttgagaccagcctgaccaacatgacgaaaccccatctccactaaaaataaaaattagccgggcatggtagtgtgtgcctataatc<br>ccagctacttgggaggctgaggcaggagaactgcttgaacccgggaggtggaggttgcagtgatggtgccactgtaccccaggctgggtgacagagcaag<br>acttcatctcaaaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	136834467	136834751	1001340	0	-	pAlu7-136236560; RIP_Alu_chr7_136_03	NA	NA	SINE	Alu	Yd3	tccaaggattgtctgatcctgtagaggtgtctgccttcattttattctgtttttaactaggctgtttcacaatgctgacaagaagttaacctgtagaaat<br>ccaatagcaatgcaaatgattcctgtccatagaaatccaaattatgtctggtggaatgcaattgattatcaatctgtggatattaaatatgaatcagttt<br>tattagtttttgcatccattgtaaatgtttcagcatttctaataagactgagtgtgtgatactttgagtgctttttgaaatagttacagcatctatgatt<br>tctcttattaattaatgagttaaataaaatcttccaaatcttccatgtgtttacatctgtatgtcatgtttatatgtcttttt<font color="green"><u>AAGAATTGTCCTTTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGTGGATCACAAGGTCGGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGTCCTTTG<br>TC</u></font>atcctttttgtgaatgccactttaatttagttagaagaaatttgttcgttgcagcaccaaagggttctaactattgcatagagtacctttcttgcttg<br>ctttttttgtctgttttttttttttttaactaagacaatctacttgacaaaacaaaccatcatgagaaggaggttttgacactttaagcttagaataaat<br>tgaagtgtgtctataaaaacatgaaatattctttttgaaagtaccatataaatgctagtgcctattgctaatgaacagaattgaatggtattaagagaaa<br>agttattaagcttcagtgatactccttcatattgtgtgtaaccaccacaggtattgctttctttttttaagtcaatgattttgag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	4222065	4222392	1001341	0	+	pAlu8-4372545; RIP_Alu_chr8_004_01	NA	NA	SINE	Alu	Ya5	tctctcttgtacttcataaatatatatacctactaaatgcccacaaaaatttaaaaaataagttattgtaaaaataagtagttaattaacattaaaaatg<br>ctttacatctcaaaggggcagaaaggattacaactttctttaagccaaggggaacattaaggtcctcttgataagactagggcccttaaaataaagagaa<br>atcttacctaagaaaacagctttcccctcttcagttcctgtttactgttatagcttccattattgccctagtccatacaagattcatttgtttttcatgt<br>tttttccaaagtaatctatttttagtaatacaatttcctctcttgctttctagaagactctacattgtcagttaaaacattttttaaa<font color="green"><u>AAGATAATCAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGCGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAATCAAT</u></font>ataatacactgcctgttactaaaatcataaccaaatattgaacctaaatcaaagcacccg<br>acaaaaacgtgcaagggatttaatatgtttaaattttactcgaaaacatttatattctaatggaactcagatgatattttatgaaatatgttctctttca<br>attgtgaggacattttccatattcatcagttgtaatggcaagtttacaagaaaaagtttaaatactttaagtgtgtagacatatagtgaactaatataca<br>gcatatcatatttttattttgaatttggtagttttgctcacaataaatatttgcaccttgtctatatataaaaaaagagttttgttaatgcttaagtagt<br>ttggaatgtaattttactttcttaaaga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CSMD1:NM:033225:3/70	
0	chr8	11934307	11934616	1001342	0	+	pAlu8-11805240; RIP_Alu_chr8_011_01	NA	NA	SINE	Alu	Y	cttcacagagaagcagcaggcttgaaaataatgcccagattcttaacaccaatgccagaagaaacagaatggacctcattcatgaaaaattggtctgcct<br>gttgactccctgtaatatattctcagaagccttgttttttcacctaacctggacctcacgcagtggtaaagctgctacttggtgtggggcggtattagaa<br>aacatttacagaaaaacattataaatactgtcgcctgaacactggggaaaacaatagactaaacaaaagtcttcagaggaagtcctgggaatgagatgct<br>ttggggaatgtgggctttgaaaagcttcaacatatttctgagaatttgcaaaactgtgtatgtcaaggctgtgtgcatgtttagtaaa<font color="green"><u>AACCTGGGAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AACCTGGGAAAT</u></font>ttctaccttccctgcacaagcagaaagtgtaagccaaggcagagtcgtaatctgtctgtctgagtgttgaaagcaggg<br>cccaacacatacacaaagcccctctgcaagttccaaacacatatggaaatctttgtcaaattattagctgacctctaagctaatggaaaaaatattttaa<br>tcgacataggtgacaaaaaatagagaccaaaaagtttattcagaaaagatactgaacaaacaaataactacaatgaggagtacaacgtggggaggacgga<br>gaatcttatttctagagtggccacattatcatgtttaaaatgtctggtattcaaaaaaagtatgagacatgcaaaaagaaaaaacccaagaaagtatggc<br>acatggaaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	12528717	12529030	1001343	0	-	pAlu8-12303806; RIP_Alu_chr8_012_01	NA	NA	SINE	Alu	Yb7	acttgttatctccacttggctgtctgtcttgcattgacctcatcttaccttgcctctcctgatttcctcttctgcctgggctcaccacgtcagattcaca<br>ccaccatccacccagcttccaaaacacctgggcctcctccttcattcctccctctttctcagtcaagttagtctactgtctcctctccatcctcactgcc<br>acagccttggtccagccaaccatcttgtctcacttggtgtattgcagcctcctacctggtctactcacctcccactctcctccagccagactgctcttgt<br>tctagcacaaagtggatcattactcccctgtctaaaaacatctactgtctccctttgtctacaggatagacacgacaaagagccttt<font color="green"><u>AAGATTTGGCTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTGGCTCC</u></font>aacttacctctatgttagtcactttttataattatatgaacatctctcagctcctcaccctctcacgtctcga<br>tttttgcacatgctcttccctctgctgggaatgatcttccacacctctcctatcgacctggctagttcctaccattttctagtcttcaactgaggagtcc<br>tgtggtggagagggatttctcacaacctgatatagattgcacgcccacccacctccgggctttttcttttttctttcttttgttttttttgaaggagtct<br>tgctctgaccatgcaggctggagtgcagtggtgcgatcttggctcactgcaatctccaccacccgggttcaagcaattctcccacctcagccttctgagt<br>atctggaattacag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	31571256	31571594	1001344	0	-	pAlu8-31427348; RIP_Alu_chr8_031_01	NA	NA	SINE	Alu	Yb7	atactcatcaggattcaaaaggaaaaatggaggaaaaaaagtaaatgtgctttatccaccttaccattctaaaccctggctaattttatagcctaaaaat<br>ccacacttcattttaaactacatacatgaccaccaatacaaaaaaaatcttaataaaataaataaaattatcccaaaatgtcagttttcaaattacagta<br>caaacaaggcatcagaataaataaccttccacttgctgggtattacacaaaagcaacaaagaaaagaaaaaaatgaggaaaaaaataaactccttaatca<br>taaaagttagaacagatataatgttcacacttccaagcatacatagtctcccaaaggcaactgatattgtacagaaaaatcattat<font color="green"><u>AAAGAAACAGAGAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAACAGAGAA</u></font>tagttggttcttcaagggcaaatttccaaagacactggcaaaaatat<br>tttctcaacatgtgtggcaccctgcaatgctaaaattgtatttttggtatactcaactatcctgtcaatagggcaaaggtctgatagaagcaaaaggaaa<br>taaattaaggagaaaatgaagtgaagagtgaggttaagtagcttaccattaacagttctcagaaaataccaacaaaaatacaccaccatggaaaagaagt<br>tacaataacagtagaatataccaatatgcaacacctcaccatgtgttaaaaattagaaggagtggccaggcgtggtggctcatacctgtaatcccagcac<br>tttgggaggccgaggccggcggatcacgaggtcaggaga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	47381319	47381640	1001345	0	-	pAlu8-47071828; RIP_Alu_chr8_047_01	NA	NA	SINE	Alu	Yi6	aagcacactgaggcctacagtgaaaattcgaatatcccatgataaaaactacaaagaaagtatctgtgaaactgctttgtgaagtgtggatttacctcac<br>agagttaaaactttcttttaattcagaaggttggaaatactctttttgttgaatctgtgaagggacatttaaaagtgtaatgtggcctatagtgaaacac<br>caaatattccatggtcaaaacaagaaacaagctatttgtgaaactgctttgtgatgtgtggattctgctcacagagttacacctttcttttgagtcagga<br>ggttgaaaacactgttttcccagaatctacaaagggacatttaagagcaccctggggaatatagtgaaaaacaatatatcccacaataa<font color="green"><u>AAGCTAGAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTTCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGCTAGAAAG</u></font>aagctgtctgtgataatgcttcagatgtgcagattcatctcacagagttaaacctttcttttaatta<br>accaaatgtgaaaacatgctctttgtagaatctgtgaagggatatttcaaagcccactgagggctatagtgaaaaactgaatatcctgtgataaaaactg<br>aaagaagctgtctgtgaaactacgttgttatatgtggattcagctcacaaagttaaatctttgtttttattcagcaggttggaaacactgtttttgtaga<br>atctgcaaagggacatttaaaagcagacattggcctacagtgaaacattgaatattccattataaaaactagaaagaagctatctgtgaaattgctttgt<br>gatatgttgattcagctcacag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	48919429	48919732	1001346	0	-	pAlu8-48642507; RIP_Alu_chr8_049_01	NA	NA	SINE	Alu	Y	aaaagatttttcacatcccttgtaggttgtattcctaggtatttttattctctttgtagcaattgtgaatgggagttcactcatgatttggctctctgtt<br>tgtctgttattagtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttgtcagcttaagaagatttgggg<br>ctgagactatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctcttttcctaattgaataccctttatttctttctc<br>ttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatctttgtcttgtgccgg<font color="green"><u>CTTTCAAAGGGAATGCTTTT<br></u></font><font color="red">GGCCGGGCATGGATCCCAGCACTTTGGGAGGCGGAGGCGGGCGGATCACGAGGTCAGAAGATCAAGACCATCTTGGCTAACACAGTGAAACCCTGTCTCT<br>ACTAAAAAAAAAAAAATACAAAAAATTAGCCAGGCATGGTGGCAGGCCCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCG<br>GGAGTTGGAGCTTGCAGTGAACCGAGATGGCGACACTGCACTCCACCCCAGCCTAGGGGACAGAGCGAGACTCCATCTCAAAATAAAAAAAAATAAAAAA<br>TAAA</font><font color="green"><u>AAGAATCCTTCA</u></font>ttcgcccattcagtatgatattggctgtgggtttgtcgtaaatagctcttattattttgagatacattccatcaatgcctagtt<br>tattgagagtttttagcatgaagggctgttgaattttgtcgaagccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatg<br>tgatggattacatttattgatttgcatatgttgaagcagccttgcatcccagggatgaagccgacttgatcttggtggataagcttttttgatgtgctgc<br>tggattcggtttgccagtattttattgagtattttcgcatcaatgttcatcaggggtattgagcccacgtagccaaggcaatcgtaagcaaaagga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	89392219	89392515	1001347	0	-	pAlu8-89060843; RIP_Alu_chr8_089_01	NA	NA	SINE	Alu	Ya5	gtaggaagaggaatgagagatacctttagaccaaaaagtcagtcagtgatggaaatctgaaaccaaaagaaggtgatttgggagagggaggcagacagga<br>atgggtaccggtaaggtgagaaataatgtcacctttcatagtgagcggtttttttctccaaagtaattaatgagaatcttaattttttgaatgaattctt<br>tacttatgtaaaattatatcgaaatgctatgctatttatcagcctagtgatggataacatggcaaaaaggatttaagggctcaggatcatgaaaatttaa<br>atatagttgtttgaatatatgcctgtcttaaggtcaataacaggaggatacttgctgatttttttcacacaagttctgctttatattatt<font color="green"><u>AAAAAAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAAATTG</u></font>gacagtgacatttgacaattccataaaacatgcaacaatttagtggcatgtgaagtgctctaaaataagaatagacgcatagcaaaaacgtt<br>atattgcatgaaaaattatatatatgtaaactaaatataaattatattacattgtttcttggagttacttgaataattttcccattatttcttgagagga<br>atactgatacattaattaattaatgaatatgaaatataatccagtcttaataaatctagttacagtacaaatgcataataattctaataatcacctcttg<br>gtattaatatgactcctgtgcttacaggtcttctttggattgcacttttgaaacctgatgaagccccactttcctatggggtaatgaagtctaacatg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	92152870	92153180	1001348	0	-	pAlu8-91821562; RIP_Alu_chr8_092_01	NA	NA	SINE	Alu	Ya4	atgaggtcatatggattagagtgggccacaatccaaggactggtatccttctaagaagagaaaacaaagacatgtcctttaagccccagtttgtgatatt<br>ttgctatagcagcctcaggaaactaataaaacaagcatcactgtttcctgcactaactgaacaaccgacagtgttgccataaattgtccagtgtccacta<br>aaggccatacttcagatatgttattctctgaaagacagatacaaataaaagacattttatttcagatcatccttgttctcaaaggcttgttcattcaaaa<br>tccaattctaattccagcaataaataaaaatgtcagaaaaagtgaacacacgataaagaaaaggtagaagaacacccaatgattaaa<font color="green"><u>AATCACATATTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AATCACATATTGA</u></font>agaatattcatttaaggaaagtgcttaatatataatgttaaatgaaaatgacaaagcaagacacgtatttctttat<br>gcagtatacattgaatttttttaatgagaatataaaaatgagattcttgaagaaaacaataaagtgtagtctctggaaggtaaacttaaagacaccttac<br>attttactctttctatacttatttacttattttctacaatgaatgaattaccagaaaaatgctacttacaaaaggataaatgaagacaacatcttaaatc<br>ttaatacccattcattcaagaagcagaggacacttgcaaactaatacaataaataatttggtatgtctcagacaggaattaggtatcaaaaaattgtatg<br>tgagaaaactg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LRRC69:NM:001129890:5/8	
0	chr8	98595407	98595731	1001349	0	-	pAlu8-98264106; RIP_Alu_chr8_098_02	NA	NA	SINE	Alu	Yb7	cctgaatttctagattcatttattattttttgtcatgttcattttctcttcttggactaatagtcatcccacttttttttgttttttccttgcctaaatt<br>ctatgcattttaaaaaaatggatgaaccccagtctcacagttatgtagttgaaggaagtaggagtattttaatagtcttttaaagtaattgggggatatt<br>ctttgctattatgataaaaccaatggtagcttcttaaaagttagttgcaatataaaatctgaaaccacaataaacagagtaacaagctctgttacataaa<br>acccattggcctgtcttgtactttgaattagtcttttacctatgtgtgatttggtgacatcttgcactggttcatatgcatttaaa<font color="green"><u>AATTTATTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTTATTATTTTT</u></font>tttgtagaaaggggtcttgtcatgttgcccaggctggtcttgaacttttgggctcaagcaa<br>tcctcccattttggccttctaaagtgctcaaattatggacatgagccatgataagcatttttagagtcaatttaggcattagaaagccttctctgaattt<br>gctagaattgaaatgctgtctaatgcaactttttgccataacaaaatatcctatatctgtgttgttctatatggcagccattaggcacatgtgattttga<br>caacttcaaatgtggccagcatgactaaggagctgaatttttaattttaattaatttaaatagccacatgtggttaatggctagcataatggatagtgca<br>gctctagaatgaggtgggttctcct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	106670535	106670838	1001350	0	+	pAlu8-106339227; RIP_Alu_chr8_106_03	NA	NA	SINE	Alu	Ye5	cccacagtggttcaaatctaaacaaaaaataatttattttgaaaatcactaagaggtaggagactcattcatgtttttttgtgtatcagccattattctt<br>ttcattgttgaccagtgcttccattgtatgactatgccatttttttatcccttttcctattggcgaatatttgggatattttcttcacatcaacagcaat<br>ggattcttcaaaagaggaaagcagtttttattgaaagagtctggaagcctctggtgagttatggcatcaaatcaggggacattttgactgaacgagttct<br>gccagaaaaggaaggacacaagtcaaaatcctttgcttttgtatttcagtgacctttgaatcttattgaccccagtcagtcttt<font color="green"><u>AGAAATCAAAGCAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAATCAAAGCAGAC</u></font>tgcatcactagattttcctgtaccttcagtctatctgttatcttcttgactgtctaaccaaagtgatccaaagatgaatg<br>aatttaaagattttctactggtcttggtgtgtgaatatacatggacttcttcacttttcaggtctttatttctctttgtcttattaattgccttccacaa<br>agcaatagagctatcttaaaagtactttgaaatccctggatgaaaacagccaaagccctgaaaaatatcagcattattatatcagttaataggcaattga<br>agctatgaaaggaataaccagaaagacaaatgaatggccaagaggtaaaacaattatttaaaggagaaataatgggtaacagtaaccagggttctgagaa<br>cagg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZFPM2:NM:012082:5/8	
0	chr8	118712804	118713119	1001351	0	-	pAlu8-118381506; RIP_Alu_chr8_118_02	NA	NA	SINE	Alu	Ya5	ttgctgtgggcttgctaatgcaggagagctggactggacaataacatgcaaaggagtgatagggagatagggcttggccggtagagcaggtgccacctaa<br>aaggagaacacgatgaaactgaacatcttctcaggtatttattggcatttgatttattcttctttgaatcgtctagttgagtcacttgttcattttttct<br>attttattttttgagatttatgggtgctctttgtatattttgatgttttgaaatgtcacatgtgtctgtgtgtgtgtgtgtatgttgtatgtgtgtgtgt<br>gtgtgtgtgtgtgaaagaggcagagagagagataatgatactatatatctctatatgaattgtattagtttgctcaggctgccat<font color="green"><u>AAGAAAGTTCCATAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTTCCATAG</u></font>aatgggcattttattttttatttttttaagatggagtctcattctgctgcccaggctggactgcagtgg<br>caccatctcggcttactgcaaccttcgcctcctgggttcaagcgattctcccacctccacagtagctggcattagaggtgcctaccaccatgcttagcta<br>atttttgtgtttttagtagagacggggtttcaccatgttgttcaggctggtctggaacttgtgacctcaagtgatccacccattcggcttcccaaagtgc<br>tgggattataggcgtgagccactgcgaccagtctgagtgttttaaactcagaagtttatcttcttacggttctggaggctagaagtccaagatcagtgcg<br>tcagcaagtttggttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	121681686	121681991	1001352	0	-	pAlu8-121350381; RIP_Alu_chr8_121_02	NA	NA	SINE	Alu	Yb7	catatttcgtttgtgtcctaaagcacataataggtgctcaacaaatgtctgacaatagactagaggaatgtatggataacaagaaagctagacctatact<br>ttctaggacatgatacatttttatgagttgaaaggaaccttagagaaaaatttatactaaagtcaaattgagaaggtattccaggctacaacagtgactt<br>agcatcaaaatgagacaatgaatgatgtcttgtcgttttctagcttcttgctactcaaagtgtattacagggacaccagcagcatcacatcacctgggga<br>tttgtaagaaatgctgagtttcagaccccactccaggcctgtggaatcagaatctgcattttaatatgattcatcccattacagttt<font color="green"><u>AACAAGCATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AACAAGCATTTTC</u></font>attttgaatagatcactgagctttcaccaaactaatctctcatcctttagttgaatgtcctttttttgttattttctagag<br>atgaaattcaatttcttagtgaatccacatgtgtgaggaatttactaaggaggggatggtgctagtgaaattaattaaattcactcagtgccttggaaat<br>aaagcttgaacaaaggatcagaaaaagttcctttagtgcagatgggataactgttttctcatttagaatagcgcccactctggctcagatccaggcaaaa<br>tgtcaactgctccaactcatgaaaggtcaatgaattgcctcaaacattttatgaaatgctcatctcaaagctggagcccccatggagatggttgatggtt<br>gtatgc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SNTB1:NM:021021:2/7	
0	chr8	132168302	132168597	1001353	0	-	pAlu8-131839072; RIP_Alu_chr8_132_02	NA	NA	SINE	Alu	Ya4b	gcaggcaagaaaagagcttgtgcagggaaactcccgtttttaaaaccaccagatctcatgagactcattcactatcatgaagacagcacaggaaagacct<br>gcccccatgactcaatcacctcccactaggttcctcccatgacacatgggaattgtgggagtcacaatccaagatgaaaattgggtggggacacagccaa<br>aacatattagctagtgtgtcttggaaaagtggtaaaagactaggtctgcatgactttgaattatggatgtccttgttgtcaggtatttatattcattaac<br>aagcaggttagaaccatttacacaataaaaggcttccttccagaaagctcccttccatgaagctctgtccacattttgtctct<font color="green"><u>AAAAGAAAAGAAGGGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCGCTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAAAAGAAGGGAAG</u></font>gaaaacacgactgttttttggtcaaaagaagttaaagccaaaagacggtcattgatttggttgggtatgatcagtgaagtctggga<br>tttcaggggtccttgcgtggctggaactggttaaagaacttctataatccctgagaggaggtggacaggagtctaggtatgaggatggtgggtttcacag<br>cagacaagcgagcaggctaagcaaagacattagttgtactccataaaaaaaatcctgagcaggagttaagagacctggatcatttcaggctctaccactt<br>tgtagttacagagtcttgggaagatcattttccctctccggacttcatctttttcttctttcaaagaagcaattatacaaaaagatctccaagttcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	138860562	138860873	1001354	0	+	pAlu8-138544858; RIP_Alu_chr8_138_02	NA	NA	SINE	Alu	Ya4b	gttcagggaactgagaattactttgtccctcacactctgctgagagctttacaggagctgacttaatacactttcctttaaatctcccaagataggcacc<br>acttaccttgttttacagatgaaaaactgagtccaaaaagctacgaattttgcctaaaattacataccaaaaaaaaaaatagaacaagcatttgcaatta<br>ggtccctttgacactaaaactcatgaactctccactgcttgatctttagaaaacaaacagatgtttgatttatggtaatatatttaatttaaatctctaa<br>aaatcactgtacttgtatttgctgtatattgagcatatgcttcctaaggtcatttctaccataagcagcacagactggcttgctctta<font color="green"><u>AAGAGAAGGATA<br></u></font><font color="red">GGCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCAGGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGAAGGATA</u></font>ttggggccgggcgtggtggctctggctcacgcctgtagtcccagcactttgggaggctgaggcgcgggggtcactt<br>gaggtcaggagttcgagaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggtgggcatctgtaatcc<br>cagctacttgaggggctgaggcaggagaatcgcttgaatccaggaggtcgaggttgcggtgagccaagatcgcaccacagcactccagcctgtgcgaaag<br>agcaggactctgtcaaaaaaaaaaaggagagagggagagagagggccatcggggtgaggcaacatctctcgcagatcttcagctgtgactcttcaggaca<br>aatggccatggg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	144723615	144723934	1001355	0	-	pAlu8-144498249; RIP_Alu_chr8_144_01	NA	NA	SINE	Alu	Ya5	ctgaagcaagttctccagatctagctaagatggttgactaaggtggctactctaaaaagattttcagtgtggataaaaccgctttctattggaagaagat<br>ggcatctaggactttcgcagctagagagaagtcaatgcctggcttcaaagattgaaaaggacaggctgactctcgttaggggcgaatgcagctggtgacg<br>tgaagccaatggtcatttcccattccaaaaattctaggacccttaagaatgatgctaaatccactctgcctgtgttggaaatggaataacaaagcctgga<br>tgacagtgcatctgtttacagcatggtttatggagtattttaagctcactaatgagacctactgctcagaaaaaaagattcctttcaa<font color="green"><u>AACACTACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACACTACTCAC</u></font>tgacaatgctcctggtcacccaagagctctgatggagatgaacagggagactgatgttcttcttttgc<br>caacacaacgtgcattctgcagcccctggctgggagtcactccaactttcaagtcttattaagaaatatgtttcacaaggctgtaggtgccataatgatt<br>cctctgatggatctgggcaaagtcagccgaaaaccttctggaaaggagtcatcattatagatgccacgaagaacattcatgatttatgggaggaggtcaa<br>aacatcaacatttggtattttggaaaaacctgattccagccctcatgaatctttgaggggtttgagacttcagtggaggaagcaactatagatgtggtga<br>aaatagcaagagagctagat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF623:NM:001082480:1/2	
0	chr8	39765331	39765646	1001356	0	+	pAlu8-39506177; RIP_Alu_chr8_039_01	NA	NA	SINE	Alu	Ya5	acaaaaaaaaagcaagagagagaaacagattttgtgtgcctcatgtcttgtcatgcttcttcagaaggtgttttgattatttgcaaaaccgagtctctta<br>tcaatcaaacagcaaaggtttttgctttttgaaatcttctaattatcactttggctaaatgaatgactattattttttcattggacctatgatcctattt<br>tgatcaagtatttgaaacctttaatgtatttgagaggcttctcacaattatatttcaaaatctaaaattaagtatttttgacctcaaactaactttgaga<br>tattccaaaaagctgctgaagcttccaaaagaaataataaacaggcttatttgatatgttcattatgtaaaaagattttcaaat<font color="green"><u>AAGAAATAATATTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCAGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAATATTTAA</u></font>ccttttcaaaattatatttgtattgtcatgttattagtatttgctccaaaattatatgagattcctaa<br>aaattggatttgttttgttatatgttattagtcataattatgagtattatgttaaattgttgtaggtcataaaaggagaaaatgacctagttttcttgtt<br>aattccatctttaaccacggccatttttagtcttgctcacaattaatttttttatgctgatcctttttttctgaaagctctttgcaaatcctaaagtgtt<br>gtgtcttcaagaaagctcatggaaaggactgcaacaagtactcttggctgggcacagtggctcatgcctgtaatcccaacactttgggaggcagaggtgg<br>gtggatcacctgaggt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	57014383	57014679	1001357	0	-	pAlu8-56737468; RIP_Alu_chr8_057_02	NA	NA	SINE	Alu	Sg1	taccattttccattatggccaaaatacaaaaatttgacaaatataattggtgaggcatggggaccatggggaaatgcctaggcactcttggatattgctg<br>gtggaagtacagactttagggaaaataatctgggaacatctattaaaattacaaaattgctggtgtgattccatcctgtgcagctgttctcttgagcagt<br>ggtcatttatctctgtcccccttctctgccacctaagtgcgtgctgccacccgatggaagatttgatggacatggacatgagcctcctgaggccctagaa<br>ctatcttttcggttgtgaactgaaggccaacaaagattatcactttaaggtggataatgatgaaaatgagcaccagttatctttaagaat<font color="green"><u>GGTCAGTTTA<br></u></font><font color="red">AGGCTGGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGCATCACGAGGTCAGGAGTTTGAGACCAGCCTGGCCAAGATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATCACTT<br>GAATTCGGGAGGTGGAGGTTGTGGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCGACAAAGCGAAACTCTGTCTAAAAAAAAAAAAAGAAC</font><font color="green"><u>GGT<br>CAGTTTA</u></font>ggggctggtgcaaaggatgaattgcacattgttgaagcagaggccatgaattacgaaggcagcccaattaaagtaacactggcaactttgaaa<br>atgtctgtacagccaacggtttcccttgggggatttgaaataacataaccagtggtcttacagttgaagtgtggttcagggccagtgcatattagtggac<br>agcacttagtagctgtggtagaagatgcagagtcagaagatgaagaggaggaggatgtgaaactcttaagtatatctggaaagcggtctgctactggagg<br>tggtagcaaggttccacagaaaaaagtaaaacttgctgctgatgaagatgatgatgatgatgatgataatgatgatgatgaagatgatgatgatttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	72551419	72551739	1001358	0	+	pAlu8-72274503; RIP_Alu_chr8_072_03	NA	NA	SINE	Alu	Ya5	tctttcactcctccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatcataacaataaaaactaaatctggaattatgctcagttaatga<br>cagctacttctgttcatgtagttttagatgtactttattgaattacttgtgttgttttttgtaatggacatatatccttttatctgaaattatgttagtc<br>ctctttgagaattttgacagaagtagggtgagttggataatgcctaataaacgaattttcctcatttccattcagcaggacctgtaatctctgttagcag<br>tggagctgctcagcaaaggttaagcttgatagtgaacaacctctttatgtacaaaaccgtatttggtaggcctcattgctggtaata<font color="green"><u>GTTTCACTATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAATT</font><font color="green"><u>GTTTCACTATATC</u></font>ttgatggatatttaagccacattgattttttggtatgggctgtttggaaggaatgtccgaagtaac<br>tatagatgcttagccttctttttcaaagtttctagcacctatgtcccacacacattaggaactgaatgtttattctactgaactgaaataatagagtttt<br>tcacatatttgagacttacctgttaaagagagactttgtttttttttgttttacatcagacagaagtataagaaccatgggggaatgttgttggaaggta<br>gatttgactcaatataaaaaaaaaatttagccattcagaaatcaaacaagttgcttcagaggtgaaatagtctccactgcaacatgttcaagagaatctg<br>ggggcttatttaaaaggtcat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	83004812	83005117	1001359	0	+	pAlu8-82727897; RIP_Alu_chr8_083_01	NA	NA	SINE	Alu	Yb3a1	tttctcagctgtgaggaggtctaggcctcagcaattttggaaagtcactgctgtcaaagagtctatttgagattgtagagtaaggatagattctgttatt<br>tcttgcaaattgagaaaccctttgagagtttgtggtagtaggataatgaagtagataaacctgctattccagtttctgtagcagtagccactcgtaatcc<br>tataagtagggttattagttttatggccctgcactgatggacttgagctttgaggggcacagatatgctctgctttccaccaggttagaagttaggataa<br>tacatgttacactgttaacttttagcaaactttacttttgttgaaaactttgtaagtttgggatttcaattattctttgctatt<font color="green"><u>AATAAGACCCCATTCA<br></u></font><font color="red">GGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGAACTTTCGGAGACCAAGGTGGGTGGATTGCAAGGTCAGGGGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCAGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGTATGGCGT<br>GAACTCCAGAGGCGGAGGTTGCAGTGATCCGAGATTGCGCTGCTGCACTCCAGCCTGGGCGATAGAGTGAGACTCTGTCTCAAAATAAATAAATAAATAA<br>ATAAAA</font><font color="green"><u>AATAAGACC</u></font>gtccatattaacttagaattggtatagatggcaccttcctgattctgtaagtactttaaggtttgactgagtgaaaacagcttgc<br>acgtttgagcagacctcactggacagcctcactggaccttttccagctcctgcagtagctcattcactatcctgcttcagagacttcgtcttaccatttt<br>ctttccctgagacatttctctctctactgtacctttttgctttactcaggtattcaaaggattggatgaggcccaccacaatagggagtgcaatttcctt<br>tactcaatctactgattcaaatgttcatttcatctaaatactctcccacaggcacacatcacataaacatatgtgatatgcatgtatatatacatatat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	108120235	108120537	1001360	0	+	pAlu8-107788927; RIP_Alu_chr8_108_01	NA	NA	SINE	Alu	Yb7	aaaagaaccataattttatttggtaaatacaagctagggccaaaacttttatggaaaatgtaatgcttcagaaaacagcatacctgcaacttcacattat<br>gggagggtccctatgataaagagtagagactggctggaggagaaagcttccacaggaagatgacagtgacaactttcagatttgggaaagtaaaagacac<br>ctggaaaaaatggattggggacttcaagcaaataaaaaaaatcttcctttctttgcacatacttaagatttgaggaacaaagggcttcaggtcctatgct<br>agcataactagcatgcacttgacggggcatcagccaaatgcaggtggagccaatgaacaccagaaaaggactatgctgggt<font color="green"><u>AAGAATGCATGAACATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATGCATGAACATTGG</u></font>aaaagcacagaggaagtgggggaaagacgtctccagattctgctgtggtagtctgactcatgcgcatcagggttgtgc<br>agtgtcaggcaaattttttgccagttccatacatcaaccattgaaatgatgcaccaccgaaaccaccaattaaaaaaaaaaactatcaataaaatattgt<br>acaattttttcccaggagtaacagaaattgggaggaagggttgaggaggaatgaatctctatcatcttgttgtccatgggaatgctgacaggaaaacaaa<br>tcagggaggaatggcctgacaaggagcccctaaacccaaggtgtcccagggttactgtctccctttgcctttccccttcatgagcagatttctctcccac<br>ctt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	126336817	126337115	1001361	0	-	pAlu8-126005510; RIP_Alu_chr8_126_02	NA	NA	SINE	Alu	Y	gttacccaagctggagtgcagtggctattcacaggcactatcatagtgtactgcagccttgaactcccggactcaagtgatcctcctgcctcagcctcct<br>gagtaactgagactataataagcatttaagtaagtagcttcctgtccccatctttaatgaggcataattaatatataattaactatgcatataaagtata<br>taatttgataatgtacacatctgttcaatcattaccacaatcaagagagtgaatatttgttgattgttcacaaagttgccttgtgcccttagtaatccct<br>atcctctgcactttcaggcttctactccccactccaacacaactgatctgttttctgatgccttacatcaatttgcatcata<font color="green"><u>AAGAATTTTATCAAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGTCTAACATGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCCAGACTCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATTTTATCAAAATGG</u></font>gaatcacataggatatgctcttttttttttttttttttggtctggcaccttgctgcatgtatcaatagtcctcatttttttt<br>ttttttgctgagtagtattctgtggatatgacatacaatgtctattcatttatcagttacgggatattgggcttgtttccagtttgaactaatagaaata<br>aagctgctatgaacatttgtgtagtagaagtctttctgcgggcacatgcttccaatggtcttgaataaatatctcgaagtgggatgcctaggtcatatat<br>gtttaacttttaaagtggttgtatcagtttacatttccaccagcagtgtgaagagactcagattctgcctagacttgccaacacatggtatgatcagttt<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NSMCE2:NM:173685:5/8	
0	chr9	4346672	4346969	1001362	0	+	pAlu9-4336570; RIP_Alu_chr9_004_01	NA	NA	SINE	Alu	Ya4	tcctttctctcttgatgcagcctagctttcaacagcactttctccctggggatacaatacatacaaagcttcatttgacagtcaaagcagagcgatgact<br>ttggtgttctagccagtgactgccctgccctgaagcattaaaactcattgattaaaaggatgaagagccatatggcatcttgatttaggaagaataaaaa<br>atacattaaataatttctaaagtattatatccattattcataagtgtggccattactttacatccagagccacaaaatgtcaatcaactgatagaaaaag<br>agcagaattgccagtctcagttgcacctttatggccatccttggtcagcttctctagtaggactaacaagcagtggcaacaagattt<font color="green"><u>AATAATGGATGGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>TAATGGATGGA</u></font>atttcaggcaatagctgtgtcttagtccattttgtattgctataaagaaatatctaaggctaggtaatttataaggaaaagaggtttat<br>ttgactcacggttctgcaggctatacaagaagcctggtgctgtcatctgcttggcttcaggtgagggcctcaggccacttccactcatggcagaaggtaa<br>agagaagcaggcctgtgcagagatcacatgacaagaaagagacagaggaagtgtcagactcttcttaacaaccagctctcatgggaactaatagagcaag<br>aactcactcactacccctcctcggggagggcattaatctactcatgagggatctgccctcatgacctaaacacctctcattaggctccacctccaaca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	10498752	10499050	1001363	0	+	pAlu9-10488651; RIP_Alu_chr9_010_02	NA	NA	SINE	Alu	Ya5	agcaatatgaaacacagtatttttgtttgcataccaaaaaaattaactgttagctttattggcactaataattatcctatcatttgcttcatgtcaattg<br>gttataccacattaaaggaaggcttccttgcacctgggtcaaaacaggtcacatcaaatttctcttttatttcaaatatctcctcaaatctgtaaacaga<br>atgacaaagaaaacttacttttaagatatacgcatttttgtatgaaccaacattttcagtaatttgactataatagatatcttatagcctgagacacaaa<br>aaaaaggtaagaacaattggtgttgtatattataaatagcaattaaggtaaaattttcacaccaataaacttataagaaaaaaagactt<font color="green"><u>AAAACCTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAACCTTCTTG</u></font>gaatatctattccctcagcaaaagttggggcaactttatatctcagttaatgttacatttgttaccaaagaaaattcaacaagattcaa<br>gtatttaagctgaactgtctgcccagctaccactagatttatccttctgtacacataccaagcttgaggtttttaaaatgagaaggtcctcattgttcaa<br>ctcccacttatgtgtgagaacatgcagtgtttggttttctgttcttgtgttagtttgcccagaacttaatgtataataaaaaagagaaagtccttactaa<br>actcgatagattattattactagggataaacaaagaccatatattcaacctgccaccatcttttttgtatctgcccaaaacatcttaaaatctcttacca<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTPRD:NM:002839:2/46	
0	chr9	13655423	13655745	1001364	0	+	pAlu9-13645322; RIP_Alu_chr9_013_02	NA	NA	SINE	Alu	Yg6	cagtaagtaaatatctcaactttgctggtaaccagaaaaaaaaagaaaagccactattaatatcacttttgtcttttatattggcaagaatagcaaaggt<br>tacaaaacacaaggaagtgaatactttgcactgttgatttgagtggaaatgtttaaaattttttcaaaagcaatttggcaatattaatacaaaattaaca<br>tgaaagcatcctttggtagcaaaccagagaaataactattcatgaatattttatatctgtatcattatattggtatctctatatctttttccctctctat<br>atgcactacagttttgtgatagtaaaacaatgtagttaattacctcaataagtgaagttatagaagaaattaaggtatacccataatataa<font color="green"><u>AACACTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACACTTGG</u></font>taattctgggggggacaatttttttaactaagtatgccatagcaagattcccaagacatattgttcag<br>cgaaaataaaaaggtgtaattatttatttacaaattgaaattttaatacaaaaatatctgttcatgtataccaatatatagtaagggaaatagtagtaca<br>cattctgaattcctgacagaagatactataggaagggcagttggaattaaaagtgggagaatgattaaggagatttttctaattttacctcgttgactat<br>gtttggatgttttatcataaaattaaaaatgaattgatgagacttggacttctatccaagacggaatttcagcaaatggagttacattccagcctaaaac<br>aaacaaaaatggaaaaaatatct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	16389408	16389730	1001365	0	+	pAlu9-16379307; RIP_Alu_chr9_016_02	NA	NA	SINE	Alu	Ya5	tgggctcctcacctctctcttgcaagattcctaatttttaggcactcttacttggtttgatatagctaaaactctgatacctttcattgtccttcatgat<br>tttaccaacctccttggttctaacaattggagtttaagagttactatagaaaatgttctgtattttaatgtacaatatgattgctggccatttatataca<br>aggtatagacttcaaaggaacagagtaggagtgatcaaatgactgaattatccaagtatttcttccacaatcccttttttggtgtggggtcattgtcttg<br>gtgcatgtagacatctgcgcgatagagcaaccaggggagccgcaacactcagcccagcctaagcctttgtgtacaggatcaggtcct<font color="green"><u>AAGAGTGACAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTGACAGCC</u></font>atctccaggtcatattcttccaaggaaaagtcagtggtaccatgaaggggctgggtaagcattt<br>ggaagctcacccagaagagggggcctcattggtccacgcctgtccttctgaaggcccacagttggacctggggccgccccctccgggatggcttcgtgtt<br>aattatgatgcaatcccctggccatgcagcctcagcaacaatttcgggagtcagggtccatgcgcaaggccattaacactaaacatgttttaatccataa<br>ttgtgtgagatttatttaatttaggggctttatttatagttcgattggaattgtaatgtattttcagccctccgcactgtgatctgtcaatttttatggc<br>gtcttttaattgtgttcttccag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	29624707	29625012	1001366	0	-	pAlu9-29614605; RIP_Alu_chr9_029_01	NA	NA	SINE	Alu	Ya5	cccagactaaaagacactgtggttagtgattgcagacaggaaacaatccatcaactgagggagaatgcagcactaaggacactaggcaaggaatatgata<br>caaaagtactttcctactaggataaaataagcaaacataaaattcattctgagcacttccttccttaagcaatattattaagggctgccaaaagcaaagt<br>ctcactactcagaaaattactgagaaaaaatgaggtaaggaaatatgaaagaactgagactaatggataaaagttaaggataatctagaaaaaagtgaaa<br>gccaatcttcatcatatatatacacaatttatgtttatgtatttatagagaactaacaaacttgcactgagcaaccttttttaaa<font color="green"><u>AATCTACCCAGGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATCTACCCAGGCTT</u></font>atggattcagccagatcacctcatcaagaactgattcctttctatgattttttttttgccgggaaaaatgtgagttttg<br>ttgtgtatataccattgttactttcaccgtgatatgcaagctttgactatagcatatcgttataccctatgtgtctgaccccaggagacttgggtgggga<br>agaggaagaaatattttaagcttgcagctaagccagaggaaatggatattagatttttcaattttgtgtgtttgagaatagttaataaaactaagaaatt<br>agatcagtctctttgggagcatttttttaaactatgaaatacaaagctatgggtatggataccgaaccaacatttctgaatcccacgaatttccaggttt<br>aaagtt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	41673269	41673573	1001367	0	-	pAlu9-41588821;pAlu9-40699651;pAlu9-40496918;pAlu9-40700328;pAlu9-40497593; RIP_Alu_chr9_041_02	NA	NA	SINE	Alu	Ya5	gggattacaggcgtgagccaccgcgcccggccaaaacacagatcttatagcaacaagaggaaagaactatgggccaaattttcttagctatgcttgaagt<br>aaactttgacaactaatcactctttattttatttaagaattcccaaccaggagtaaaagtccaaacctgacttataaggcatataatttaaaaaataata<br>aagtgaaataacttaatacaaataacaaaatgttgaaggtaggcatgttaaatccacactatcagattgggttttaaagagaaggagaggagacttcaag<br>catttagaaatcaataggaaaaagattgttctatttttataccataatgcaaaggaggcagagtgattttaagaacattgaagttaa<font color="green"><u>AAGCAATTAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGCAATTAACTTGG</u></font>ggtaaaataaaatagaggtaggtagataatcagatatatgtaaaaacaaacttcaaaaattattttaacatcataatttt<br>agataaattgaatcagtggcttattcttgaaggtatagtagcaaatgagatgactgttaagtaacaaacaactttttgtttgacatagttgaagttagta<br>ccatctgtgtgcaagagacaccgttcctatcacacagatagcatgggaaatacctgcctgcatgattcaattacctcacaccaggtccctcccacgacac<br>gtagaaattcaagatgagatttgagtgggtgtgagaaatctactcatccatccaaacccaaagaatggacttagaggcatgaagaaaagcgaaagtgaga<br>cttaata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	119832262	119832263	1001368	0	-	pAlu9-61393723; RIP_Alu_chr9_079_01	NA	NA	SINE	Alu	Ya5	gacagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagtcaaactaagc<br>ttcataagtgaaggagaaataaaatactttacagacaaccaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagcac<br>taaacatggaaaggaacaaccagtaccagccgctgcaagatcatgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaagtaacgagcaaa<br>atcaccagctaacatcataatgacaggatcaaattcacacataacaatattaacattaaatgtaaatggactaaatgctccaattaa<font color="green"><u>AAGACACAGACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGACACAGACTGG</u></font>gcaaattggataaagagtcaagacccatcagtgtactgtattcaggaaacccaactcacatgcagagacacacataggcttaaa<br>atgaaaggatggaggaagatctaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaaga<br>tcaaaagagacaaagaagaccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacc<br>cagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacattaataattggagactttaacaccccactgtcaacattagacaga<br>tca	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ASTN2:NM:014010:4/22	
0	chr9	75669531	75669796	1001369	0	+	pAlu9-69239549; RIP_Alu_chr9_072_01	NA	NA	SINE	Alu	Ya5a2	ctgatgtttcaggctgcaagctgtaagagagggaagtgattatcctgtgtacctaatggcagcttcacaatctctgtaaacagaaagatggtagaagact<br>atgcatatgctgtcccactgcaacacttactgtcacagagattgacacttccattctccacacctaggcattttgaaaccactataagaagaaatacagc<br>aagtgtatatttaataacatttattcttacttagtataatcctaagtattctattaataatatcctaagaactggtgattataatgaatattgagtaatg<br>tgcaaacaaactgagttaacatgggtgctcctaaagaaataccatttgtatggaggcacttgtttaagctgaacgagtatgtaactt<font color="green"><u>AAGACTTGATATT<br></u></font><font color="red">GGAGATCGAGACCATGCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTA<br>TTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG<br>ACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTGATATT</u></font>atgggaaaattcttcatattt<br>aattaatctaaagcataggtcacaaactcaagcacctattgagcaatgaaaaatacgaaaaataagtgaattgcacttggtgaagcactgtgaggagggg<br>aggtcatctgccgcacctaactcggctcagtaaaccgttggcaagcaggacaatgtcccaatgttgtcagcttttacaattataaaagagaacctggaaa<br>tgcatattttcatgtgaaatctgatttttaaatgttagcaatagtgaattatttttaaaagattatgagagcaaaccaaaatgtattggaggactgtgta<br>cagaactaatcctctaggtctgtggtctctggtacagacagaaaccagtttctccttctagagaga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	97292924	97293233	1001370	0	-	pAlu9-90591952; RIP_Alu_chr9_094_01	NA	NA	SINE	Alu	Yb7	ttaaaattgcaggaagaaatgactaagtattccttcttttcttgaggctttaagtaggaatccatttccttgcattttacagtttgtaaagactgctcga<br>attctttatttcatgcccccacccacctttcattttcttttctttttttattaagtttaagtccgggtacatgtgcaagatgtgcaggtttgttacatag<br>ttgaacgtgtgccatgatggtttgctgcccctatcaacccatcacctaggtattaagcccagcatgcattagctatttttcctaatgctcttcccagacc<br>tactccatcacccaacaggccccagtgtgtgttgttctgctccctgtgtccatgtgttctcattatttagctcccactcataagc<font color="green"><u>AAAAACATGGTGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAACATGGTGTTTGG</u></font>ggttttccgttcctgcattagtttgttgaggataatggcttccagctccatccatgtccctgcaaaggacatg<br>atctctttcctttttatggctgcatagtattccatggtgtatatgtaccacattttctttatccagtctatcattgaggggcactagagttgataccatg<br>tgtttgcaattgtgagtagcaatagctaatatttttaaataatatataaattattatagtcatactggaaacctgtaaaaatgatcagtgaacttgaaga<br>catagcaatgttgaactaaacaaaacaaatcacagagaaaagtataaaggttaaaaaataaaaagagctctagaatagtttgctgtaatatcaagcagct<br>taatatttagta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	112430213	112430515	1001371	0	-	pAlu9-105887562; RIP_Alu_chr9_109_01	NA	NA	SINE	Alu	Ya5	agagacagacagactctatgtgccccagacaatggattttccttttatgtatcctgcactctgctttgcctttgcccagacacacaatctatacataatt<br>aatctcccaatacatatgattaagcttcagctgtgctctgactaaaagtctgagttatgctttgacaggcttctaacagagagcatgatattttccagtg<br>ggataaaacaagaatgtgttttgttcctttctctttgggatgagctaattgtaagccctcctgctagaaagaaacagcaaattaagttttcctctatatg<br>caaatgacagttttataaacagattagtagtgagtttccatcttttctctctagttgttggcagagggatatgtagctcaattacttt<font color="green"><u>AAAACCAAAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAACCAAAGCC</u></font>atcattttcaaaggtattcccaataattccatgcatattacctcatttgtttatattttacaactaacctatcctgagctatagg<br>cttctggttatatttaccttattgttgttgttgctatttgtgtgagacagggtctcactccaatgcccaggctggagtgcagtggcaacatcttggctca<br>ctgcaacctctgcctcccagtgtcaagtgattctctcacctcagcctcctgagtaactgggattacaggtgtgtgccaccatgcccagcttatttttgta<br>ttttttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatacacctgccttgacctcccaaagtgctggga<br>tta	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PALM2:NM:053016:1/8	
0	chr9	41011834	41012140	1001372	0	-	pAlu9-40093744; RIP_Alu_chr9_040_02	NA	NA	SINE	Alu	Y	aagtgtggttaatatatgggtattcgtgcattttatgacattgtgtattaaaagatacatatttacaatactacattatttaactctctaagtagatttc<br>tatgtagtataatactgccattatgttttgtctttgacattgcatattgtcaattttattcagtttatttagtgcatactttatgtaaggtactctcata<br>ttcaaaaattcttctaataaaataaatggacaaatcaagaatgtatcaaagaatatgagttctgtcttgatcattggtatagtttggatatttgtgccct<br>ccaaatctcatgttgaaatgtgatccgcaatgttggaagtggggcctggtgggaggtatttgcatcatagggatgggttcctcat<font color="green"><u>GAAAAGCTTGGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAGGATCGAGACCGTCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAGATACAAAAAAATTAGCCAGGCGCTGTGGCGGGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAATAGCTTGGTGTC</u></font>ctccctgtggtaatgagtgggctctggttgtattagttcacaggaggtctgattggtaaaaagagtctggcacttcgt<br>tccctctctcgccacctgagaggccaactcccccttcaccatctgccatgattgtaagcttcctgaggcctcaccagaagcagatgctgatgccatgctt<br>tttgtacagtctgcagaactgtgagccaaaataaatctcttttccctataaaccactcagccttggccggccgcggtggctcacgcctgtaatcccagca<br>cttcgggaggccaagacgggtggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaaaa<br>aattagc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	115937098	115937379	1001373	0	+	pAlu9-109390659; RIP_Alu_chr9_113_01	NA	NA	SINE	Alu	Ya5a2	ttcccattacctgctctgcagctgcttggtctgtggacactcgagtctttttcaagagctgtcgaagtttgtccaattcctcctggtatgacttgcgaat<br>ttcatctatctcctcctcggcctgagaacgctcttgagctgacttctttttcctttctgagaggttcttaggaacaagagaaccatcatcagctctagct<br>tgttaacagagaataaagagggatgatggcggtggcagttaattaccttgtggaatccttactccatttctgaaaactccattttttagttgaattttcc<br>cctaaatatttaacattcttggctactgggtgaggaaaatggtgacaggagaaggaaaacaagaagagctgtatctacccctctatt<font color="green"><u>AAGAGCTAGGGAA<br></u></font><font color="red">ATTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAG<br>CCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC<br>CCGCCACTGCACTCCATCCTGGGCGACAGAGCGAGACTCCGCCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGCTAGGGAA</u></font>catcc<br>taactttaataaaggtacaggaaatcagacattctcataccctgatagtaagaaaacgaatggatatactctctttggatagtaatcctgtgaaaagcct<br>ttaaaaacatacgtatccagaaattccacaaattgtaattaaggattcaataagtcatagtcataaagagtgtgttacaaggatggtcactgtagtagta<br>tctatagtaatgacaaactgaaaacagccaagaggttagaaggaattggttaaaaataaataaataaaatggaaaaaatcctggaaaaaaatgcaattgc<br>agaccaagatttaccctcttaaaaggcactgggccaaaacagctttacctaatgagatttactgaagcctcaggagcagttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FKBP15:NM:015258:21/28	
0	chrX	40505185	40505498	1001374	0	-	pAluX-39349696; RIP_Alu_chrX_040_01	NA	NA	SINE	Alu	Yd8	atcagctcttttttggctataggatgccgtaaggatgacagagtaagccaagggaagttagggctaaaatagcaccttaagtgcccagttaaaggcactt<br>tgggtagctgggaatggggtaggcagccggatctgtcttcagatcttggcaatgtcacttactaagtagatcgagtaggaaatttttttgcccagtaagg<br>gacggagagggacagccagaagtggcttcctaacacaaattgactttagcagtcagtctacatgccagtagttatcagcaggcacagggtgggcactgga<br>aaggagcagtgcctgggaagcagatgatctgagtcctggatcagctgccgtggtgtgacactgggccagcttgtgctccccaatctcaaa<font color="green"><u>AATGAAAGGA<br></u></font><font color="red">CGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATGAAAGGA</u></font>attggggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggaggatggcttgagct<br>caggagttcaagaccaccctggataacatggcaaaaccccgtctctacaaaaaaatacaaaaattagctgggtgtggtggtgcatgcctgtagtcccagc<br>tactcaggaggctgaggtgagaggatcactggagcctgggaagtcgaggctgcagtgagccgtgatcacaccactgcattccagcctgggtgacagagca<br>agaccctgtcttaaaaaattgaactgtatcaggggtccccagacttttgggtatcacgagccggtaaacccaccacacctacaccatcttccccattttt<br>ttccactgcagcca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CXorf38:NM:144970:2/7	
0	chrX	48050349	48050638	1001375	0	-	pAluX-46876575; RIP_Alu_chrX_047_01	NA	NA	SINE	Alu	Sc	aggaaggaccatctggtctctgatctgttactggggccacttgcatggcttaggaatcgctttgactgttggcccctccctactgtgagctccttgaggg<br>ccttgtctgcacctggggcatccgggaagtcccagtcccagcccaggggatccctcggaggcccctgaattagtgaccctacaagtgcagattcaactct<br>ggtttagagggtaaagggatctgggagttgggttgccagtgtggagaccgaattcaaagaaggatcatgaaaggtattaattgttattattactacattt<br>aaacagtgtttacaagctcagagaggccttcccttagcctattttacatgtattgttcactatttcataagtgaggaagctgaataaa<font color="green"><u>AAGTAGCCTAAG<br></u></font><font color="red">GACTGGGCGTGGTGGCTCACGACTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAAGCGATCGAGATCATCCTGCCCACCATGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAACTTAGCGGGGCGTGGTAGTGCCTGCCTGTAGTCCCAGATACTCTGGAGGCTAAGGAAGGAGAATCGCTTA<br>AACATGGGAGTTGGATGTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGCAAAAGAACGAGACTCCATCCAAAAAAAAAAAA</font><font color="green"><u>AAGTAGCTTA<br>AG</u></font>agtgttggtcagtgatacatcccaatgcaaccagaattgttatgggtaccacctcactgaattccacattcaatgttggtgcctcggtaggctggtat<br>gccagatctggtactgctttctttgctgcctggattaatttcagcaaaccatttctttccctctcccttccctgtatacatctccccacaccatcttgtt<br>cagcagtgttttgtcccctctgtatgtctttacatttactctcccagcagctgtctacgagcttatatgggatcccttgtattttacggaaactcttccc<br>tttgtagaccttgtgaattcttagaatgctatgctccaaatcttctgtataccaaactctcaattacatggagatatttgctgtttgcaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SSX5:NM:021015:6/9	
0	chrX	55680236	55680548	1001376	0	-	pAluX-54285500; RIP_Alu_chrX_055_01	NA	NA	SINE	Alu	Sc	aaagccatattgaatcataaatatgagagcatattcttacttctgattatacccaacaactaacaattttcagattattttctcatttctgcttttaaca<br>aatacataatgcatttctaataccagtttgtgtgaaatatcctgagcaccctaagcagattctagtaccagctctgacattattcgtgagattctggatg<br>aattccataaattctacacccatcttttgctgttattgaaaatagtaaatgcaaatcagatatttaaaatctgtttcaaagttgatttctgtatcctcat<br>gttctgttggatagaatacaaagatatgacttgtttttcataacaatcagtttcactccagttataatatctgagttgaaatttcatggttcct<font color="green"><u>AAGAAA<br></u></font><font color="red">ATGAGTGGGCAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGAGGGCAGATCAGAAGGTCAAGAGATCGAGACCATCCT<br>GGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGG<br>AGTATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAAATCGCACTATTGCACTACAGTCTGGCGACAGAGCAAGACTCTGTCAAAAAAAAAAAA<br>AAAAAAAAAAGGA</font><font color="green"><u>AAGAAA</u></font>gagaaaacgagtgggcaacttgcttgatgaaagtatcttttccacacatttttcaacttggcgactgttaatcagaagagc<br>ttctgaatttataggaagtattccatgtttatggaagaaattacctaaatgattttactctacactgctgaaccattccattagactatttacattgaaa<br>gatagttttcagttatttccaggagcccgttgaacaagcctcaatttcattcttaggaagcttatagtcttaaacgattatcttgttaaaatagttagca<br>aattacatgagaaaggaaaataataaaaaatgaaaataataaagagcaatagaataaatctaagggaaaagaggtacttactaaaagacagctatgaatc<br>attagtaaaagga	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	88480732	88481031	1001377	0	-	pAluX-86516355; RIP_Alu_chrX_088_01	NA	NA	SINE	Alu	Ya5	ctctctttaatcctataaaaggcgaggaagctgcagaagaaaaagtttgaagctagcagagtttgattcttgagatttaaggaaagaagccgtctccgta<br>aggcaaaacaggaagggctgatgtgaaagctgcagcatattatccagaggatctagctaaaataattgatgaaggtggtgacactaaacaacagattttc<br>agtacagacaaaatagggttatattgatagaagatgctataaaggactttcatcgctagggaggagaagtcagtgtctggcttcaaatcttcaaaaggca<br>ggctgaatctcttgttatggcctaatgcagctagtgactttaagttgaagctgaatctaatttgccattctggaaatccttgggtcttt<font color="green"><u>AAGAATTATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAATTATGC</u></font>taaatctactaagcctgtgctctatacatggaacaatgaagcctgggtgaaagcccacctatttacagaatcgtgtattaaatatttta<br>aacccaattttatgatctatggctcagaaataagatttctttcaaaatattactacttattaactatgcacctggtcacccaagttctatgatggacgtg<br>tccatggagattaatgttgcttttatgcctgcaaacacaacatctattctttagctcatggattaaggagtaatttaagctttcaaatcttattatttaa<br>gagatatattttgtaaggctctagctgccatagatgttgattcctctgatggaccggggcaaagtacattgaaaaccttctgtaaagaattcacccttct<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	90923453	90923751	1001378	0	+	pAluX-88959081; RIP_Alu_chrX_090_01	NA	NA	SINE	Alu	Ya5	gacaagaaaggttatattttgagcctaatattcaaatcagtcactcggcttttcacatatctcttgctaatgacgctgtttattttattagacaaattat<br>ataatgccataaaacaggggaccttctccaggtattttctcctatgggagactagctgataaagtatggtataaccataacattgtggtttcttccaaga<br>taaggatttccacagtgtttttcacataaagagtcctagagctaagtttcacttaataaaataagaggcaacttaaaatgatggttaaaaaaaagatact<br>cattacaacatgatgtagtgatgtagtggtggaaaataaatagaatgcaaagaaatgaaaaatagaaacttatatataagcttctta<font color="green"><u>AAGTGTTGGGACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGCGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGTGTTGGGACT</u></font>taggcaataccacacttgggctcagatatctgttgattgattaactgggtaatggcgtgttctcctggactttgtaaaaacattgtaa<br>atattgacatatatttgaaaatacattataagctatattaaattttagaatatgtaaggggcagcagtagtatctgaagtcaatatctttcactttttat<br>tttttttttctgaaggttcatcctatagttaatgctttggtaagtaaagaggatagggtactgggtcctgcaacttagctctgagttctcagctaaggta<br>agtagttagtgcttcatgcaaacagtggtatagaataacttcactccagttacttattagggaggatcgtcttaaactctgcctctcaacattataaat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	91729883	91730190	1001379	0	+	pAluX-89765511; RIP_Alu_chrX_091_01	NA	NA	SINE	Alu	Ya4b	ttgttatttgttttctgttcattttgtggccttctcttccttctttccttccttttttcttcttttagttaagatgattttctctggtgatacaatttag<br>ttttttttttaaattttttgtcagtcagttatctgttttttgatttaaggttaccatgaaacttgcaaatactatcttataacccattattttaagctaa<br>taataatttaacactgtataaacaaacaaacataaaaatgtagagaaaactcataaacactctacattttattaccctactttttaatcttttgttgttt<br>ttattgatatattgttatactgtctaggtcttgaaaagttgtagttattattttttattggttcctgttttaatatttctacttatgat<font color="green"><u>AAGAATAGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAGACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAATAGTTT</u></font>acacaccaaagttacagtgttataatattctgtattttttgtgtatttactattaccagtcagttttgtacctttgtatga<br>attcttgttgctcattaacattctattctttttaattgaggcactctctttagtatttcctgaaggacaggtctggtgttgttaaaatccttcagctttt<br>gttttttggctgaagtctttatttctccttcatgtttagaggatattttcaccagatatactattatagagtgaaagtattttttctccagcacttcttt<br>aaatatgtcatgccactctctcatgccctgtaaagtttccactgaaatgtgctgccagatgtattggtgctccattgtatgttatttgtttgttttctct<br>tgctgctc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PCDH11X:NM:032969:5/6	
0	chrX	135157998	135158313	1001380	0	+	pAluX-133102677; RIP_Alu_chrX_134_01	NA	NA	SINE	Alu	Ya5	tctttgcctggaaactaagatcagatcctcagtgggctgcgcaggggaagtcattccagagaattttatgttcaatcaacgtgtaacacctaacacgctc<br>ctacttgacacaggcacactctttcctaaatgcattccattccctcaactttccaaagttcccataaggagtcctactatgtgctaggaatccagcacat<br>gcatgataaaactccatcattcttttttcatcattttcaactggctactattaagtgcaccatatgggccctgagaatgaagcattgaaaaaggcaaatt<br>catggagtttacaatctagtggaagacacagataaggaaaacaataaataaacgtgccatttttctgacagcaatgagtgcattc<font color="green"><u>AAGAAAATAAAACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATAAAACAGGG</u></font>ggtaataggataagtagtgatagggcaggggagtgacagagtgtgagaagggctcctttaaccagga<br>tggcagagaagacctctctgtagggaagacgtttgcattcttttttcttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcagt<br>gccgtgatctccgctcactacaatctttgtctcctgggttcaagcaattctcctgcctcccaaatagctgggattacaggcacccaccaccatgtctggc<br>taatttttgtatttttagtagagatggggtttcactatgttggccaggctggtcttgaactcctgacctcgtgttccctctcctcagcctcgcaaagtgc<br>tgagactacaggtgtgag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	138384911	138385220	1001381	0	+	pAluX-136329590; RIP_Alu_chrX_138_02	NA	NA	SINE	Alu	Ye5	aatggaagcagaggtttgagtgatgcaacaagaaatgtgggaggcctctagaagccagaataaccaaggaatggattctaccctagagcctccagaagga<br>acacagccctgtgaacaccttgattttagcccagtaagacccaatttggatgtctgacattcataattataacataataaatttctgttgttttaaacca<br>caaagattgtggttatttgttacagcaaaaataggaattcagtaatatatatacaacacatatgatatttaaaggtctttctaatcaaaaccaggcctcc<br>tttaacctacaggtagagagttttcccagagcagtgcctctccataactcttcctagggcccgtctaatcctgacactgcaggt<font color="green"><u>AGAATTCTAGGTGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAATTCTAGGTGCAAG</u></font>gctacccaaaggctgccattttgagatgattctgcccccaccagtttctccaggccagaagctgattgtctgt<br>tgttttaggtgcagctcaaaacctccagttttgccttctgtaagagcactgacccaactctgcaaaccattgctagttagtaacaatcagaaaaggatat<br>gtgaatgcttattcttctccatgctattttctaacctggctgtattaacagctaatcagaaattaacgctatgagtaggcactcttctgacttaagaggg<br>agcaagtcagcgaaatatttaagtgaccatttcattgcccgcctccattccaacagggttaatgatcatgaggcctggaacttagtcgtcatcatttccc<br>attgggatttt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	144436003	144436313	1001382	0	+	pAluX-142293100; RIP_Alu_chrX_144_01	NA	NA	SINE	Alu	Sq	gcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaattcaagaa<br>acaacataagctggtgaacttgcagagaaaaaagaatatgcttttacattgttggtgggagtgtaaattagttcaaccatgtggaagacattgtggtgat<br>tcctcaaagacttagaggcagaaatatcatttgacccagcaatcccattactggatacatccccaaaagaatataaatcatcccattataaaaatacatg<br>cacgtgtatgttcattgcagcactattcacaatagaaaagacatagaatcaacccaaatgcccatcagtgatagactggata<font color="green"><u>AAGAAAATATGGTACATA<br></u></font><font color="red">GGTCCGGGCACGGTGGCTCATGCCCGTAATCCCAGCAATTTGGTAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGCTCAAGACCAGCCTGGCCAACA<br>TGCCAAAATTCTGTCTTTACTAAAAATACAAAAAATTAGCGGGGCATGGTGGGGGATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATCA<br>CTTGAACCCGGGAGGTGGAGGTTGCAGTAAGCCGAGATTGTGCCACTGCACTCCAGCCTTGGCAACAAGAGCGAAACTCTGCCTCAAAAAAAAAAAAAAA<br>AGAAAGAAAGA</font><font color="green"><u>AAGAAAATGTGGTACATA</u></font>tactccatggaatactgtgcagccataaaagggaatgagataatgacctttgcagggacatggatggagct<br>ggaagccattatcctcagcaaactaaggcaggaacagaaaaccaaacactgcactttgtcacttataagtgggacctgaatgacaagaacacatggacac<br>atggggaggaacaacacacattggggcctgtcagaatgggttgagggagggaaagcaccaggaataatagctaatgaatgtgggcttagtttctgggtga<br>tgggttgatctgtgaagcaaaccaccatggcacacctttacgtatgtaacaaacctgcacatcctgcacatgtaccccagaactaaaaataaaagttgaa<br>gaaaaataaaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	149551149	149551472	1001383	0	-	pAluX-147322023; RIP_Alu_chrX_149_01	NA	NA	SINE	Alu	Y	aaaactgtgttaagagaacacataccatttacaactgctgcatagaaaatgcaatacttagatatttaatataatataatgtgtataggatctgcatcca<br>gaaagttacaaaatgcttttgtaagaaataaagactcctgtgcatgtatcctggaacttaaaataaaataaaatataaaaaatcaaagaggagcacaatg<br>agatttcctgtgacctattaaaatccataaaatttatcaaagaaatttacatacgaagtaaatcttgatagtagttccaatcacaataaattatacttgc<br>aactgacatttataagcaatttcttttctctctttaaaaaaactctatattttctttatgaaaatagtgattttttaaaactctactc<font color="green"><u>TAAAATGGGACA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAGAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAATGGGACA</u></font>aaatatttgtaatctgaagtgtttcaaattttgtactctattgctgcagtcttatactacatca<br>acaagtatgaatacatttataagaatatatttaaaatattttcacttattgtatttcccttgaaaatattgacatttttgaattttaataaaaagaattc<br>agaaaaaaagagttgaacatcaaatagaaataataataaacaccttttttgtgctcataaaagaataaagacctaaataaaagaggagacatactatgtt<br>tactgcctagaagactcaacatagtaaagatgtcaattcttgaattgacctgtaggtttaatgcagttctcatcaaaatctcagcaaagttttttgtaga<br>cgtagacaaggttattctaaaata	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	79072217	79072510	1001384	0	-	pAluX-77113362; RIP_Alu_chrX_078_01	NA	NA	SINE	Alu	Ya5	gcactaaatatggaaaggaaggaccactaccagataatacaaaaatacactgcaacccacagatcagttttactatagagcaaccacacaagcaagccaa<br>cgtaataacctgctaaaagcacaatgaaaggatcaaatccacacatatcaatactaacattgaatgtaaatgggctaaacaccccaattaaaagacacag<br>atagacaaactggatttaaaaagtaagacccaatggtatgctgtcttcaagagacccatctcacaaataatgacacccacaggctcaaaataaagggatg<br>caggaaaatctactaagcaaatagaaaacagaaaataaggagggttgcagtcccaaattcagacaaaaccgacttcaaaccaacaaagataaaaaaaaa<font color="green"><u>A<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A</u></font>aaaac<br>gaaagaagggtgttacataatggtaaaggtctcaattcaacaagacttaactattctaaatatgtatgcacccaacacaagagcaccaagatttataaac<br>caagtttttagatctctacaaagagacatagactccccaataatagtgggagatttcaacactccactgacagtattagacagatcatcaaggcagaaaa<br>ttaacaaagatattcaggacctaaactcaacattgaaccaaatggatctgatagatctttacagaactctctacccaaaaaacaacagaatatacattct<br>tctcattgctccatgacacatactcaaaaattgaccacataattgaacataaaacaatctaaaagaacacaaatcataccaaacacactctcag	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	92140606	92140901	1001385	0	+	pAluX-90176234; RIP_Alu_chrX_091_02	NA	NA	SINE	Alu	Yg6	tcggcctcccaaagtgctgggattataggcatgagccaccgcgcttggccataattgagaagtttgaaccagaaaaataaaatgatcagacttgtattag<br>gttggtcaccattacttttaatggcaaaaaccgcgatcacttttacaccaacctagtattttatgaagctcactctgtttgcagtgtggaaagttgattt<br>gcagtggacaaaaagcagatatagtaaaactaatgagaaaattacaacagtagttcaggtaggagatgatagggaatttgtcttagatgttattaattga<br>aatgatacaaagtgggccaaatcgtagtttctttaaatccagggagttagtaatggaatataggagaaatacaaagagatacat<font color="green"><u>GAAATATCAATGTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGATATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCTCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAA<br>TATCAATGTTCT</u></font>tggattagggaggtagctgatttatgtgtattattttataaattaaaatagaacaatacatagaacaatggtgacaagttttcatgaa<br>gcaaagattgtgactaatcttacactaagcaactgacacccataagaaataagaaaggaaacacaaaaaactttactaaatagaaaatgtgaatttaatt<br>gacaaacatgtcctaatgtaacagtagtttcaatgcatgtaaatggattatagtgattaatgaagcaaagcaaatatacagttttgaaaaaaagagaaag<br>aataaccagatgttcttttaaaggacacagaataatcagaaatagaggagaagaaaaagaaatactaagcagtatgaatcaaagaaagctaggagt	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	120090625	120090922	1001386	0	-	pAluX-117985277; RIP_Alu_chrX_119_02	NA	NA	SINE	Alu	Sg	tttgaagtgaatttggcaggattcattaaacaccttccagtgtctgtcatttaccacctcaacactcagtgatgactgcatccatttcaactctgcacat<br>tcttttctaagtagctttaactacgttaactcagtgaaattcttatgtctcttgggaggttttcactactgcttagctatgaactatataacatttttat<br>gacactatctctactggcatgagccattactaggtggaaataagtgaactctgtgaccgccttgcagttcccatgctccagggtgcctccacatgggact<br>actatagtgttgctaataatcataaaattaaaagggcaggacttgtgtggacctaaagggtagccctggacactaaggcctc<font color="green"><u>AAAGAAAAGGTGGAGCTC<br></u></font><font color="red">GGCCGGGCACACTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTAGGTGGATCACAAGATCAGGAGATCGAGACCATCCTGGCCAACATGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAACTAGCCGGGCGTGGTGGCATGCACCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTGG<br>AACCCAGGAGGCGGGGATTGCAGTCAGCTGAGATCATGCCACTGTACTCCAGCCTGGGCAATAGAGCAAGGCTCCGTCTGAAAAAATAAAAATAAAAA</font><font color="green"><u>AA<br>AGAAAAGGAAAAGCTCTGGATTC</u></font>tggattctggattctgagttgtcctagagcttaagggccttgatcattcattggacaaagagcatgtcaatctgaag<br>ttttcagcaaatgagcttagggctcactgagagcccctcgttgacccttccggtcccgccccctgtctcctgccaaccagaatctttcccgccttatcta<br>agtcctctcaggccagacttggtgggaggttcctaggattcgctccctgcccttcccaccttagggtgtcctctgagacagactcttatttcctcaataa<br>agagaaagactcttattccctcagcggccagctcctcgcctcccctcggccgtagccacctcagtggtcaccgtcttcaccgtggtcgcctcagcccgct<br>cgcca	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	promoter:CT47A7:NM:001080140	
0	chrY	9012975	9013273	1001387	0	+	pAluY-8978451; RIP_Alu_chrY_009_01	NA	NA	SINE	Alu	Y	caagagacatgccccagattaatactttgtatccctcaatccagtgaaattgacacacagtatgtcatatgttcaccccttttcaacttgaatctatcca<br>catctcctgagataatacgtactcttaaaataaagacaaaaatgaggttatagttacacctaacataatacaaaaatgaggtcatatttacacgtaacat<br>aatagaactatccttcatacaatcaggaacacaccaatccccaacccgaacactattacgtaaagttacgtatactcaaatgatgatatgaagtcaatat<br>atcttatgtcacataataaaaggaaagaaaaaatgaagatattttcttactacatgtgtatatatgcacaaacttttttagcaa<font color="green"><u>AAGAAGGAGGAAATAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTGGC<br>GTGAACCAGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAGGAGGAAATAC</u></font>ttaagacaattaaagtcgtcatttctgcagctggtcacgtgttttcaggcggtattgatgactggcttctactccccattgtgtg<br>ttttctttgccttcagtaaggtattcagcaggtcattttttttttcctggtttgtgacccaaaccttaattcctgaaggatctgaaccatttggagtcct<br>gccaggattgggctcttgtagtttcctattgaccttaatcgcaggtcatagtaatactaagacacatcctaatgtaccttctctattccattcatactct<br>tccttacctaaattgtggagcagtagactgatttcctccttgatagtttgggtcaatcacctcagtcaatactgtgccttccttcttagactgttgact	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	48419952	48419953	1001388	0	-	pAlu10-48355753;1104685007159; RIP_Alu_chr10_048_01	NA;NA	NA;NA	SINE	Alu	Ya5	gggatgcgggccggctgcagtgagcggccaccttgccaagacacagagagatggagcgtgaagccaacacagtgtaaggcaggactgagagaggagaaag<br>catggctagaactttgcctgtactgtagctcaagccacgctaaagccaaaccgttgccaaccaagaaggtttcattagtcaggtgcaatccactttgctt<br>aggcctgtttggattctgcttttctgcaacctgtgacaaaaggaatccaaatgacaacattttaaaaattttaattaaaaaatttttgtcaaagagaagc<br>aagcctgtatatatcaaaccatgtatacctcaagtggcttcgaaagtaaacctaaggcagagactgaagacactttggtgtagattttctta<font color="green"><u>AATTTTAT<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AATTTTAT</u></font>gccagtctttgctttatttaggtatagacacataagactaccataattcagatcgttagtctttgaataatcatgtggactgacttcc<br>ctgggaagtcggtgaagaattagaaagtacacaatttggaggaagaggggggaaaggagagataaataagaccttctgtggttcaagtgaggcagctcct<br>tcctgaggccccaacaatgcaaagctggtgatagcagagggaggggtccttctgcaggagggaacatccagggtctgtttcctcctgggaaaatcagagc<br>aagtttgagacttgttccctaagacccagagttagggggattttctcagatggaccagggtccatttgtatgaaaaggtaaccaggtccctgaaatcacc<br>acct	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr10	132145588	132145589	1001389	0	-	pAlu10-132075177;1104685055881; RIP_Alu_chr10_132_02	NA;NA	NA;NA	SINE	Alu	Yb7	agataataaaagaataatataatacactttgtgttcaaactgtcaaaaatgtagacagaatagaaaaagttattaaaagacacaaattaccaaactgact<br>tgagaagaaatggaaaatctgcatagtcccattcttatatttgttaaagaaattcaacttataatgagaattaccccattaaaaaaaacctcagtacgag<br>atgccttcattgatgaattctatcacttaaaggcaaataagacaaatattgccaaaaatatttgagaaaaaagaatatcatttatcaaaccattttgtga<br>agctagcggaactctgatatcaaaaccaaagatattagaagaaagacaaaatattcagataactatcacctgtgatacatgatgc<font color="green"><u>AAAATTCTTTAACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAATTCTTTAACAG</u></font>aagattctacttctactcaaaatgaataaaagggtctagctttactcacctgcttgaatcaactaaaaaaaaaaaaaaa<br>acagacaaaacgtatgaaacaatggtatacaagacattgggtatcagacaacaaaaaacaataacccacagacaataagaaaatgaaacaagccctatga<br>ttgtcccgcttactgcttggagaaagttttcaggtctcagggaaaggtggttttcctgaattgaggagatgtagctgagagcctggggaaaccaaggcag<br>ctagaattcacagggcagagtatcatagaggaaagagcttcacaaagagagaactcaggagatcagcagagtctccctcaagtattcagttgaacactga<br>ccagtg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr10	117006343	117006344	1001390	0	-	pAlu10-117137554; RIP_Alu_chr10_116_01	NA	NA	SINE	Alu	Yb7	gatgaatagtttgcaaatattttctccccttctggaggttgtcttttcattctgttgattgtccttttctttgcaaaagctttttattttatatgatccc<br>atttgtttacttttgcttttgttgcctgtgctgttgcggccttttgcagaaagtcttctccagacccatgtcttgaaggattattcctgttttctgttgt<br>tttattgttttgatccatttttagtttagaggggagggtctagtttcatactgctgcaaatgaatgtcaacttttcccagaactatttattaaagaggct<br>gctttttcagagcatttttttcattaatctttattcagtaatttttgtattcaatacagtctctcaaaatggatacagacttgtt<font color="green"><u>AAGAATGAGAGAGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCTACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATGAGAGAGAT</u></font>tcattatccattatccttttctttctcctggattttctatcttgaggtcactattttccaatcaacttattcgggaggggg<br>acaggtagagtgaaattcaaatacctctcagaaatatgattaaatctattgataaaaactatttttgaatgtctcactacactaacaagttctttccaac<br>taaaattccttttttttcctgttaaaccaggaaaaataaatatcacggtgtatagtgttaatatcaaaaggactctgaatgtagacttaactttaaattc<br>tgaatacaacatcttatagcctgtgtgagtttgggtttaaccatggtaaatcacagtgtcttcttctataaattaaatatactaatgtacactacacaga<br>tgta	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ATRNL1:NM:207303:10/29	
0	chr10	96763985	96763986	1001391	0	-	pAlu10-96895199; RIP_Alu_chr10_096_01	NA	NA	SINE	Alu	Yc1	tcaatgaatggataaagaaactctggtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgatggaatact<br>actcagccataaaaaggagtgaattaacagcatttgcagcaacctgatgagattggagactattattctaagtgaagtagctcaggaatggaaaaccaaa<br>cttcttatgttctcactgatatgtgggacctaagctgtgaggatgcaaaggcataagaatgatgaaatggactgtggggacttgggagaaagagtgggaa<br>gggggtgagggataaaagattacaaatatggtgcagtgtatattgctcaggtgatggatgcaccaaaatctcacaaatcaccactaaa<font color="green"><u>GAACTTATTCAT<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCC<br>GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG<br>AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GA<br>CCTTATTCAT</u></font>gtaaccaaataccacttgtaccccaataactgatggaaaaaaataaaaataaagataatttgacatcttccattctaatttggatgccct<br>ttatatctttctcttgtctgattgctctagctatgacctacagtactatcttgaataacaatgatgacagtgggcatctttattgtgttccagatcttag<br>agaaaaggctttcagtttttccccattcaatatgatactagttgtgtgtctgttgtatatggattttatgttaaaatatgtgccttctatccccagtttt<br>ttgagggtttttttcatggagggatgttaaattgtatcaaatgctttttcagcatcaattgaaatgattatattgtttttaatgcttcattctgtgaa	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	89814978	89814979	1001392	0	+	pAlu10-89946192; RIP_Alu_chr10_089_01	NA	NA	SINE	Alu	Ya5	agctctgggtgaaatggaaaaaagttacctaatgtcattaagcctcagtttctcatctgtaaaatggggaaataatagacaataataaaaaaaaaaaggg<br>cctattgcataggcttgtgtgtagacgggatgaaggaatgcataccaaacatgtagctcagatcctggctcacagtaagaagtcgggaaatgtaagctac<br>ggctctattccttgttgtgtgctaggcacttttgtgtatgagatacaatttcatttcccctgcatccaatagagtgggttatatgatccccattttatag<br>atgaggagattgaagcatggggaggttaagcaaatttgttcaaggtccacagccatagatgatctggtataagttattccattt<font color="green"><u>AGAATGACTTGATACT<br></u></font><font color="red">AGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAATGACCTGATACT</u></font>tttagaatctttaggaaagttcctgtaggcccataggaaaaggagtttatagttacacctagttcatgactatattaattt<br>atgtcagaagggaattagaatcatcatcaaaagttagagttggaagtaactttattgagtatttggaaaaatgaattgcaacctcatgtctcctgatgtg<br>tagtttaaaacataacaaagcaacaacaaacaacaacaacaacaacaatccaacatactaccaaatttatgccaaaatcccaaatggaaaacaggtaatg<br>tggttctatgctggctggaggacaggcaggacagtttgagccctttcccccacctgttctaaaagggtgtcacaaagccccaaggcacactttaaaaatc<br>aca	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	122140604	122140605	1001393	0	-	pAlu10-122271816;1104685660173; RIP_Alu_chr10_122_01	NA;NA	NA;NA	SINE	Alu	Ya8	tttgacttacacaagaaaaatgtatttcaaatgccagtgaacaaaaaaaatacatctatgtatgtcacctttgagttcatttgtcaagaggagaaaaggg<br>gaaaaatgatgtgtcatattactgaaaagtatgttgactgaattccatttttcataaatcagatattttatattaaaaaggagactgctttgaggagaaa<br>atatgagtttattatccagataatttaaattgaattaatagtatttgaaatatttaaattattagatccaatctgaggtagaatgatttgaattagttat<br>acaacatggtgcatcgtctttttagtatttttgtcactttctgttctagaattgttcttactctcagcaagaccaattgctgctat<font color="green"><u>AAAATTTTGATGTT<br></u></font><font color="red">CGGTGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAA<br>AAAAAAAAAACAAAAAAAAAAAAAACCAAAACCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTTGATGTT</u></font>ttccgaactatctatccaaaaagatctagattgct<br>tttcccccacgtaaagcaagaaactaattttgctgactggaaactagaaattgccctgtaacgaattgcaactcgttagttgcaaatgggctttttcggt<br>ggcatagactcaacttcccaacttctgggcttgtttcagagccatttggccagaaagctagcaaggcaagccctcttcaccccacattcacccaggagca<br>ggatctcagcttcgtgtctggatagcttttgttgacttctccagacctgccttttcccttccaccactgtaagctgcatcagctggacgtccacttggtt<br>ccacctcaagaggcactgccaggaagcagagaaagggaggaaagtgaagct	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr10	68084666	68084667	1001394	0	-	pAlu10-67977053; RIP_Alu_chr10_067_01	NA	NA	SINE	Alu	Ya5	acccagcacatttttaatgtttctttttctttcaccctttaatgtacagaaaacagtcaatactaaacaaaaaccgataagcatgtagctgagggactac<br>agtcattactgattatcgttaagtgtatttgcactcctgcctttcgtgtgcctattcttattttaatgtttgcttttggtcccaaaagactcatggggat<br>ttctgtggtgatttctaaaattcttcctctgtgtagctccctcctctctgggacagtgcctcacaaatccagctatcccactcttgcaaatctgacctct<br>ctccacagctgaggaagactgccaggctctgtttgggtttacttctctgtgatttggtccagaaaatatctccaatgttttgttgt<font color="green"><u>AAAATTATGATGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAATTATGATGTC</u></font>tcagaagttgtaaaattatgacagggtatcttcatttggctgtgcttggttctaccttagttccttttgaatc<br>tccatatccagtttaagcatgatgataaactaattaaagcaaactgaaggccaaccggcatgcatcgggttaaatgatggcttctcagagcatcttgtca<br>tcatgaaactgaagagttccctgatcccccatgcaggacatggaacaggtttgtggctcacttgttcagttgccatcactgctcaaaccccttgcaggaa<br>ggggagcatgcagatgggcaggtgcagaggctggggccagtgctttgggctctggccctgtggtagtgtctaggggtgggtgcctgcaaccccagtgtta<br>caatgctgtctta	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CTNNA3:NM:001127384:12/18	
0	chr10	68336767	68336768	1001395	0	-	pAlu10-68229160;1104685136577; RIP_Alu_chr10_068_01	NA;NA	NA;NA	SINE	Alu	Yb7	tgcaaagaatttatgactaagttcccaaaagtaattgcaacaaaaacaaaaattgacaagaaggacctaattaacttaaagagcttttgcacaataaaag<br>aaactatcaatagaataaacagacaaccttccgaatgggagaaaatattagcaaactgtgcatctgacaaaggcctattatccagaatctgtaaggaact<br>taaatcagtaagcaaaaatatattaattgcatttaaaagtgggcaaaggacaagaagagacacttctcaaaaaaagacatacatgtggccaacaaatacg<br>tgaaaaaatgttcattatgactaatcactagagaaattaaatttcaaactatgagatactatctcacatcagtcagaatagctattattaaa<font color="green"><u>AAGTTAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTTTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTAAG</u></font>aaacaacagatgctgtttaagctgcagagaaaagggaacgcttatacactgctggtaggaatataagtta<br>gttcagccactgtggaaagcagtgtggagatttctcaaagaacttgaaacagaactatcatttggcccaacaattccactattgggtatacacccaaagg<br>aaaataaatcattctaccaaaaagatgcatgcactcatatgttcatcacaatgctattcacaatagcaaagacatggcatcaaccaagatgcccattgac<br>agtggaccagataaagaaattgtggtacatatagaccacggaatactgcacagccataaaaaagaatgaaatcatgttctttgcagcaacatgaaatgta<br>gctggaggtcattatcctaagc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CTNNA3:NM:001127384:10/18	
0	chr10	72605421	72605422	1001396	0	-	pAlu10-72497815;1104685138101; RIP_Alu_chr10_072_01	NA;NA	NA;NA	SINE	Alu	Yg6	cttcttggttgtcaggttttgcaatgtttactgcgccataaatggctaagaagctatttgcagggtaaagagataaaaatggaatctggcttctaaattg<br>actttccttgaacaagagaagaaaagcagaaaaaacacattaaagagcccttttaaacaggtgttatcagggaagcaaagtggtggggaaatttcaagca<br>aatgagaaacagctaatgattatcttcaatgttactgttttcttatcccaaggaagttaactcccataccctactaagagtggggaaaaggtgcagggga<br>gtgttatagaacatccagcaccaaatccactacttgtgtttaggtactaacaacactcaccaagcacagactgcagaggaaaataactcataa<font color="green"><u>GAAGGTA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAG</font><font color="green"><u>GAAGGTA</u></font>acacacaaccaggtttctaggcgggaaaaaggtgggtgggcaggagaggggcttaatcctaagcaaaggtggaagattcag<br>aagcagatcactgagactgctcatcttctgcaccctgagaagtggcctcttcttccccatgttgatctggcactgagtcacttctaggaagctcaaagta<br>tacgatcccctgataccagttcaactccaagaggagagagatcctgtactacttgtgcagatatccccacagcctgatggcagtgcctggcacatagcaa<br>gcactcaaatggtcaccatgtaagtgctgttccaatttcacctaatctttactgaaaaggatagcacaaaatgaaagcaataaattcctgctctgggaac<br>tccaggtgacat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SGPL1:NM:003901:3/15	
0	chr10	73193548	73193549	1001397	0	-	pAlu10-73085955;1104685145945; RIP_Alu_chr10_072_02	NA;NA	NA;NA	SINE	Alu	Ya1	tggatatctgggaggaatgccttccaggcagagggagcggcctgtgcaaaggccctgaggcaagagcatgcctagtgcgcttgaggagcatgaggaggcc<br>agcgtggctggaaggggtgcacagcgggaagagttgcaggagatgagggcagagagatctcagggtccatcatggacactttgtaggccactgattgtga<br>ggaaacacgtgatatgaataaccagttttcaagaagcaccctggctgctgtgatgaggacacactgtagggggcatgggtgggagtggctagactggtgt<br>ccaggctcctgcagggatgcaggcagggatgatgagctccaggcaggggagcggtgtgggatctggcagattctgggcatgttt<font color="green"><u>CAAAGTAGAGCTGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACAA<br>AAAACAAAAAA</font><font color="green"><u>CAAAGTAGAGCTGAGAGG</u></font>gggtttcctgctggtggggatctggctgtgcaagaatgaattgagcccaagcacctgggaggatggcattg<br>ccattagctaggacaggagaggctgcaggtggagctggctgagggacaagatcggaagttcatttgagacatggcgagtctggcatggctgttgacaacc<br>aagtagcaacagtgggtcagcagctggacatgctcagccaaggtccaggatgggctggaagcagaagtgtgggagccaccagcagggaggtggtgcttac<br>cgccaccagaggggcaagatcagcagggctcccaaacccctgagctgaggcaactggacagagaatcagtccgtctttgaaaattgtccaaagagcctga<br>aaatgcatatacc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CDH23:NM:022124:1/68	
0	chr10	29105299	29105300	1001398	0	+	pAlu10-29255537;1104685338171; RIP_Alu_chr10_029_02	NA;NA	NA;NA	SINE	Alu	Yc1	gcggggcccgccaagcccacgctcacccggaactccagctggctcgcaagcgcggcgcgcagccccggttcctgctcgcgcctctccctccacacctccc<br>ttgcaagctgagggagccggctctggccttggccagcccagaaaggggctcccatagtgcagcgctgggctgaagggctcctcaagtgccaccaaagtgg<br>gagcccaggcagaggaggcgccgagagctgtgaggactgccagcacgctgtcacctcgcaaaagtaaggaagatcgattatttttcacccattagctggg<br>caattcaaaaaaattctgttgcattccattttgggggagtatgcattggtaatagccttttgaagattgatttggcagtgtttattaa<font color="green"><u>AAGTAAAAATAC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGTAAAAATAC</u></font>ctattttctttgcatcatcacttctgtatttctgtccaagagaattctttgcacatgtacaaagttatacaggttgaaagaggca<br>tgggtaaagattttcaatgcagcattgttcataattgcaaaaaattttcaatttaaatgtccatcattatggaaacaaattgtgatatttccaatactac<br>atagcattatgcagcagtaagagagaataaggtaagtggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaagtgggcagatta<br>cttgaggtcaagagtttgagaacagcctggtcaacatggtgaaaccccatctctacaaaaacacaaaaaattagctggacatggtggtgtgtgcctgtaa<br>tcc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr10	3569026	3569027	1001399	0	+	pAlu10-3669258;1104685348900; RIP_Alu_chr10_003_01	NA;NA	NA;NA	SINE	Alu	Yg6	ctgacatgaggcccttgggtctctgtgcctcagtgtcctcgagttccagttgagatgggtgcccatggctatggattgttgatatccttctggctctgaa<br>atttggatagtttcttctccaaagaactaagtgttactggaggctcttgaaagaaatctgcagcggcctgggatgttacacatccagccccagattaccc<br>caaggatgggcttgaacctcaccccatatccagcgtgaaatgacctgcaggcgtgtctcggggtctggatatcaaggcatccagtgactatggagcagga<br>acgaggccttcaagtcctgatggcgaatggccacttctgcacatcccctaaaaaccttatcttctaaagaccttcaacacattaaa<font color="green"><u>AATTCTGTGAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATTCTGTGAACTT</u></font>tactatttctaaaaatatcctaccagctccaccactaaatataacgtctcttccaacgatgagtcaaatgcattttgcatcaatg<br>gctctgcatacttgagaaacggagttgtttgtggtgaagatatttttccatggtgctgctccaacagaggtcatttctaagaaatttctaatttccctgg<br>agaaaaatgaatgcttcaaagtcaaagaagaaggattttttactccagagcaacttctaaatctttttcaaaactggctttttgcttttgagatcaaact<br>ttgctctgtccagtttcaaatatcttcctttttttctgtctctactccagcttttttaactgatgcaaactttgagtatcagggtaaaccactaacctca<br>t	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr11	106044582	106044583	1001400	0	+	pAlu11-106078653;1104685398698; RIP_Alu_chr11_105_02	NA;NA	NA;NA	SINE	Alu	Ya5	aaagaatgcaaacatttgtgtctcacctatgtgttatctggaagctccctaccagctctgagttttcctgcctttgctgtaagttgtccctccttcccag<br>acggaaccaatgtacttcttatgtatatggattgatatctcatgtctccctaaaatgtgcaaaaccaagctgtgccttcaccaccttggacacattgtca<br>ggacctcctgaggctatctcacgggcacatcctcaaccttggcaaaataaactttctaaattaactgagacctgtctcaaactttctaggttcagaggag<br>catgaggcagggaatccatacacttgtctcccatcccattcctctgtatgcagatgtttgaaatgcttcttccccaacgccata<font color="green"><u>AAGAAATAGCACTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAATAGCACGTGA</u></font>acataaatttaatttcctcagcaaggccatttttatactttctgcagaaacggcacactcgtcagcagttttgccacaagagtac<br>actgaacaaaggagacagggtgatttataacctcacgtgtccaccctactgctgtgtccggtttccactggctggaacgggacctcacattctgtatttg<br>tcctgattggctagcaacttagaacgttttaaaagaggcaaaggcagaggagaactaaggaaggaggaagtaacttgtggaatgctgagaaaggtaaaaa<br>cgccttcaaataaggaagaggaacaggctatgacctaatgcctgcttggaccagtataggcatgccagggcaaatgtttaggctaaattgtgggagcta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr11	122277650	122277651	1001401	0	+	pAlu11-122311562; RIP_Alu_chr11_121_01	NA	NA	SINE	Alu	Yd3a1	tcgtcatttctctcaccttcaatcaagcaggaaaatttgccctacactgtctattcttcttctctttccattcaaatctcctagtctgggatgacataat<br>gcctggtatttaggtgcatgctacagcctccgggctgtttttcctgtttccaacctttccctagattgatcctgcacgtatatgccacctttatcttctt<br>aaaatactgtttttttcctcaatatgcttccaaaacggaagaaaggaaacataagaaataagagaatatgttcatgactgagggacaggcaaatattttt<br>agacaaaagccaaaaagaaaaaaatgataaataaattgacctatattaaaatcaagaacttctgtccctcaaaagaagcattaa<font color="green"><u>AAGAATGAAGGGCCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATAAAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAAGGCTGAGGCAGGAGAATGGCGTGAACCC<br>GGGAGGCGGAGCTTGCAGTGAGCCGAGACTTGCGCCACTGTACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGA<br>AGGGCCGGG</u></font>gccgggcgcggtcgctcacacctgtaatcctagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagaccatcctggc<br>taacacggtgaaaccccgtctctactaaaaatacaaaaaattaactgggcgtggtggcgggtgcctgtggtcccagctactcgggaggctgaggcaggag<br>aatggcatgaacccgggaggcggagcttgcagtgagccgagatcgagccactgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaa<br>aaaaaaaaaagaatgaagggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaagcagatcacaaggtcgggag	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	38801076	38801077	1001402	0	+	pAlu11-38840229; RIP_Alu_chr11_038_01	NA	NA	SINE	Alu	Ya5	ggttttgaataagatattccttgcctgtttaactttgtccaatgcaatttttcttcgaaacgcttacaagtgaatagagcacttatacacacaggatccg<br>aatggttattatttggcatggagataatagagaaaatgattcttcagaaagaaaaatgaagcatatgcaaaaataaatcagtgatgtaagtaataagtgg<br>ccatgagagaaagaggaagaggaagagtcgttggtcttcattactggcagtttccaaatattgactgcagaccctcaggagagcttcctgcaatataaat<br>ctataagatatccctgtattcctggtttttgtttagttgttttcaaatgattttctgttaattataaccaaaataattttgacttag<font color="green"><u>AAAGTGGTTTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGTGGTTTATT</u></font>taacatgggaacacgccaactcaaagtgttgactatgtgttaacattttttgactagcatgcaaaatcaaggacaggagttacg<br>ggaatatgaatggcattttgtcaaagattttctctaatatgcctgcttcattttgagaaaatatgtatttggtagaacatcttgtcatcacctctaattg<br>atacttctataatgtggtagtgatgggaagcataatgtgactggagagtcgacagtccttctgtaggagtatgtcactttgcttttccagtgaataacac<br>tgactcaaagcaaagataatttgaaaaccagaaaaaaggatgggtggataaaattggagatggggcagaaacattagaagctcatggcttctaaaaaaaa<br>aaa	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	16019995	16019996	1001403	0	+	pAlu11-16059148;1104685628913; RIP_Alu_chr11_015_01	NA;NA	NA;NA	SINE	Alu	Ya4b	cagcctgggcaatagagcaagactccatctcaaaaaaataaaataaaataaataaaataaaataaaataaaaaataaaaagcatacaaattataaaggaa<br>taaataatgtcatctgttcatatataattgtttacataaaaaatcctaagggatttacaaaatactagaactaataagtgaattaacagtattgcaatga<br>acaataaaaaataccaaaatcaatcatatttctttatactagcaacaaacaattaaaaaataatattcaaatatatatttataatagcatcagataataa<br>aatacttgggaataaatttaactgaaaaaagtattcaacacatctacactaaaaacaaaacaacatttgtaacttaaagacc<font color="green"><u>TAAATAAATGGAGGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA<br>ATAAATAAA</font><font color="green"><u>TAAATGGAGGAATA</u></font>atttcctgaatcagaagactcaatattgttacaatgtgattgttcccaaatttacctacagattcaaccaaattcca<br>ataaaaattcctcaaagttttttcatataaggtgacaaactgactttaaaatttatatgaaaaataaagcagtaggacaaactaaaacaaacttgaagaa<br>aattagaggattcaaactaccttaatgaaaactaaggctgttaaagtggaaaacgatagttttttcaacaaataccgccagaacaagttgatagacacat<br>tggaaaaaaatcctgcatcttgtatcacacattatatacaacaattagagatgaatcatgacttaaatcaagaaagaaaaaactataacactcctctaaa<br>tatac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SOX6:NM:017508:12/15	
0	chr11	48933126	48933127	1001404	0	-	pAlu11-48964719;1104685619728; RIP_Alu_chr11_048_01	NA;NA	NA;NA	SINE	Alu	Yb7	ggactgctttgaggacttcgttggaaacaggaatatcttcacataaaatatagacagaagcattctcagaaactactttgttatgtgtgcattcaactca<br>cagttttgaaccttccttttgatagagcagttttgaacctctcttcttgtagaatctgaaagtggatatttggactgctttgaggtcttcgttggaaacg<br>ggaatatcttcacatgaaactagacagaagcattctcagaaacttctttgcgatgtgtgcattcaactcacatagttgaacataccttttcatagaccgg<br>tttccaaacactctttttgtagaatctgcaggcggaaatttggactgctttgaggcctcctttgcgaacgggaatatcttcacat<font color="green"><u>AAAATCTAGACTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>A<br>AAATCTAGACTGAAG</u></font>gcattctcggaaacttctttgttatgtgtgcattcaactcacagagttgaaccttccttttgatagagcagttttgaaatgctcc<br>ttttgtagaatctgcaagtggatatttggagcactttggggcttacggtagaaacgggaattcttcacataaaaactagacggaagcattctcagaaact<br>tctttgttatttgtgcattcatctcacggagttgaacctttctgttgatagagcagttttgatgcactgtttttgtacaatctgcaagtggatattttga<br>ctgctttgaggccttctttgaaaatgggaatttcttcctataaactctagacagaagcattctcaggaacttctttgttatgtgtgcattccactcacag<br>	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr11	61145213	61145214	1001405	0	-	pAlu11-61396087;1104685019270; RIP_Alu_chr11_060_02	NA;NA	NA;NA	SINE	Alu	Yx	tattcaacatcagctgggtgtcctacaattcgattcaattctgacactacatggagttagcatcagagcccacaggttaagtaaggctcagtcccacaag<br>aatgtccccacttcaaatgctaatcgcaagtctggctctctggtacttctgacccactggctatgaatcagagattcccacaaccctctccttgggttca<br>gtaatttgttaggatggctcatagaactcatgaaaacagtttacttactagattgctggtttattataaaaggaaagaactctagaatagccagatggaa<br>gacatgcacagggcaatgtatagaaaacagccaggaagcttccatgtcctccctggtgtagaccaaaagtaatattctaagtcccccaa<font color="green"><u>AAGACTGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGACTGAATG</u></font>aaccctcctctcggccaaggggattccaaactaaacctgaaagactagttcaggtcatgattggaaggggtgtttggacatgcttcatt<br>atactgtcctccctttggaattcaggcacatctgaccagtgtgaaaggaaaataaatcttggatcgccaagtgagtgtgaacccagaaaatttgagacag<br>gtctcagttaatttagaaagtgtattttgccaggttgagaacacgtgcctgtaacaacacagcctcaggaggtcctgacaatatgtgctcaaggtggtca<br>gagcacagtttggttttatacattttagggagacatgagacatcaatcagtatgtgtaagatgtacattggtttggtccagaaaggtgggactactctaa<br>	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr11	65503489	65503490	1001406	0	-	pAlu11-65753620;1104685201932; RIP_Alu_chr11_065_01	NA;NA	NA;NA	SINE	Alu	Yc1	aaaagaagtcagaccatgacaggaaacagggggccaaacatgcctcactgtgccaccccttagaatttaggctaggcacaaaggcccttcaaaaattata<br>ataacaaagtacttccctttcccacataggaaagaaatagctcctctgttcaacctgaacacctagtcttacaaaaaactttttgttaaaaaggatcccc<br>agaggatcaattacaacccaaatggaagagcccctatcaggtattgttaagtaccttccctgctgttaaacttcagggaatcactagttgggtacacctg<br>tccaagattaaatctgtttcttatgaatccctgacggcataagaggaggacaccatgatttacacctgtgagctcctataagactta<font color="green"><u>AAGGTGTTGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGGTGTTGTTTC</u></font>acaaacacaaagataaaaaacatgatgccatgggcatagatgcattaattttctcatcctccaaattataattttcctgttgacctc<br>ctacttaagtttatgtcttctagattccacataaagatgatgctggcacaaggtttcaacccatcccatcttatgacctgaaaaatgaaaatatcctgtt<br>ggaccccttagatcaggtatccagagattaccagaggctaggggcatgggagagtgggaaatgggaagatattgctcaaaaggtacaaagtttcagttag<br>acaggtatattagagttctctaaagggacagaactaataggatagatgtatatatgaaggggagtttattgaggagtaatgattcacatgatcacaaggt<br>	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	22123797	22123798	1001407	0	-	pAlu12-22024050;1104685706556; RIP_Alu_chr12_022_02	NA;NA	NA;NA	SINE	Alu	Ya5	tggttagagcaggggtgtgccggggctgtaagtggtagagtttggttggaatataaggaatcagtgaagatgggcaagctttgtgaagactttaaatgac<br>agagtgacaacatcagtgagtcatgggaggtttgtgtgtgtggtaaagctgtaattggagatgtattctggaaagattaacatgatatgtatgtgtaaaa<br>tggttcaggtgggagaggccaattagaagattgatacaataattaatgattgatataataactaataactatcgatacaataacattactaatacaataa<br>ctaatctaaaaggagaaaagaggcagaaaggaagagatggaggccagtcattgctgagtgtatcgtaaatgattgaatatttgtat<font color="green"><u>AAGAATGGAAGGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAATGGAAGGGA</u></font>acagagagacagtgagtgatgaattcaagactaactccaagcaaggctttaagtcagaggcaccagtgcaatacatagg<br>aaagttggaggtggaattagtttaggagcagggaaagagaagaaatagactatgggtagtttaaatttttattatgcctccaaggcactctaatattatg<br>aattttatataagaaaaaagtttagattttaccaaagtcctaatgatatgtagaaatttttcttgaccaatatcaatattctaggtttttcctactgtcc<br>ttcaaaataatgtctaaccctcactgtatttgtgaagcagacatattctaattacctgcctatttatctccactccataatgttctctatgctccttgct<br>cctggaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	61704148	61704149	1001408	0	+	pAlu12-61420894;1104685241273; RIP_Alu_chr12_059_01	NA;NA	NA;NA	SINE	Alu	Ya4	ctctattttatttcttaagagcaattcctagcatttcaattgttttctgcttaaaactgttttatatcacattaacacatgatctccattggaacaatca<br>atatcaatcaaatttaatttatgattcccataactgtagaatttctttttcccccacttttaacacatggctgaagttttaatttttttaaaatattttc<br>tctactttgtctatcagtatattacctaaaactatgttttttaaaagttcgttttttaagagagtctccaaaatatttcaaacctagatgaatatttttg<br>tgaaacaaaaggaaataaattaggaaaaggaagatggatttcaaaaggaaaacacaaaaagcatgctttccttctttttattttgatt<font color="green"><u>AAAAATTTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAATTT<br>TCTC</u></font>aatgaaaaattttcattacgtgtatcttgaacaaaaaagtatttcaaatattatttttagaatatttatattcataacacattttttctcccctgc<br>atgtttataaggatctaatggaacagatgaggcaaagaccaacaaatataaaattaatgactagagggacttgaaaaatacaaaactacagctagatagg<br>aataagttctagtgttctatagaactgtagggtaactatagttaatatgtaatttcaaatagctagagggcggatattgaatgaccccaacacaaggaaa<br>tgataaatgtttgagatgatggataagctaactaccttgatctgatcactatacattataagtattgaagcattgctacgtactccacaaat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	85617739	85617740	1001409	0	+	pAlu12-85550686; RIP_Alu_chr12_084_01	NA	NA	SINE	Alu	Ya4	tatatctcatgcagtttatagaattgggaaatacctataaattatgagaggaaagtagcctatagtttagaagatttggggcaaatatataaatctatgc<br>ctacagaaaatgaaaattgccccttttgaaaacagagtagaaactaaaatcaaccaatggtcaggagaaaatatttgcaccagggataacagaaaaagaa<br>ttataaatagtcaaaaacaaaaaaggaaactagaatccagtagataattgaagaaaacaaaaaagatattttacaatgtacaaactaaaattattaaata<br>attataatgttccatttcactagcaaagatgtataaattaagaccataattagacagtattgttatcaaattatcagcagtt<font color="green"><u>TAAAAATATATGCTCTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA<br>ATAAAAAAAAATAAAAA</font><font color="green"><u>TAAAAATATATGCTCTCT</u></font>tactgttgaccaggactcagtaaaataagcaatctcataaagtatgtaattggtgagacctttta<br>aaaccatttgacaatatagattatatcaaattctttaaaatatttatactattagatattttattcttaattccatcttttaaaatggattaattattta<br>tgcagacagcaaacatatgaaaaaaagctcatcatcactggtcattaaagaaatgcaaatcaaaaccacagtgagataccatctcacaccagttagaatg<br>gccatcattgaaaaatcaggaaacaacatcctggagaggatgtggagaaataggaacacttttacactgttggtgggagtgtaaattagttcaaccattg<br>tggaagacagtgtggca	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LRRIQ1:NM:001079910:24/27	
0	chr12	87870824	87870825	1001410	0	-	pAlu12-87803763;1104685533884; RIP_Alu_chr12_086_02	NA;NA	NA;NA	SINE	Alu	Yc1	aaaagagagcaatatgtgtgatataaaatgtgacagtagcctgagggtgatgctgatattgctcctttcccatccggaacatgaactaatgacacacagg<br>ggctagaagctcagtcattcgagacaggcacactaaatagaaatgacacaagcaaatagttgaacaaaaatttcttgtaaagaaacgcattatcatctcc<br>aaatacttacagaaaaccaatattatgaaacagacctaagcttaaaaataataaaaaataaaacaggagaaataatattgaagaaatgcagttaatcagg<br>taaagttaaggaaagcttgaaatagaattaatatattcagaaagatgagagtatatgctagacagaaaatgcaaagaaatttgtagaatat<font color="green"><u>AAGAAACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACAG</u></font>tattgaacaaatgcacctataagaatgaagaaaaaaatgaaaggaaaaaatgcaaggaggggaaagaataaagggaa<br>gaaaggaaaaaaaaggaaggaaggaggaagaaggaaagaagcagagatggagggatggaggaagaaagaaagaaaggaaaaaagagtgtttagttacatg<br>aaactaaaatcttaggtgttctcaaatcagcagttgatgttggatggagggagaagagcaaatgataccttctgtgtcctagtttgtgggtttataggta<br>taacctgcttctagattctaacaaaaaacattaaatattttgttagaaatatttatttacacagcaaaggtatattaggtggctaatatttggcaaactc<br>cattttaggtacta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	98163403	98163404	1001411	0	-	pAlu12-98096334;1104685531076; RIP_Alu_chr12_096_02	NA;NA	NA;NA	SINE	Alu	Yh9	attcaggtacaccccacaggctagcagtttagtaccagtttctagatgacaggagatgagtagacaaggagctgagcaagctatgggtgaagtccggaat<br>ccaataaaaatgggtaagttccaaggaaacaggaagttcacaattgcgcagatttcttctaatgctctcctcccagggcctaatgctatgggaatctctg<br>ctgtcgatgtcgggtacagtatgaaatggaagacatacagactctgcctttgtggtacttctgtacaagcaggaaagaaaaaattctaaggcactgtgat<br>ttaaaaaaaaaaacaaactacaggggctatggagaccaaacgggtagacctagacttggctgcagggttagaggaagtgtctt<font color="green"><u>AAGAAAAGTATTGTTTA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGGT<br>GAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAAAGTATTGTTTA</u></font>aactgagattgaaagtaggattaatgctggttcaggaaaaaagggaacagacactccaggaagagaatgttctggcgctcc<br>ccatatggataggtaagagttgtggctgggagcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcaggagat<br>cgagaccatcctggctaacacagtgaaaccccatctctaataaaaatagaaaaaattagccggaagtggtggtgggcgcctgtagtcccagctactcggg<br>aggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcagagagagcaccactgcactccagcctgggcgaaagagtgagactctg<br>tc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	131424211	131424224	1001412	0	-	pAlu12-131163186;1104685140167; RIP_Alu_chr12_129_01	NA;NA	NA;NA	SINE	Alu	Yc2	ctgaacaatagagaaaaattattaaaagaaaaacagtagaatatcagggacctctgggacaataaacacagcctaacatttatgtcttcgatattctggt<br>agaagaggagagagtgtggggctaagacaatctttttaagtaataataaccgtaaactttgcaagttcaataaaaaacataaacctacatactcaaaagc<br>tgagcaaatcccaaacaaaaatccatgcccagagacatcataatcaaactgcggaaaactaaaggcaaaggaaaagtagcaaaagtaggcagagaaaaag<br>agcacattacctataggcagacactatttaaaataactgaagatttctcatcagaaaccatggaggcaagaaaaaaaacatttttcaaaaa<font color="green"><u>CTAAAATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAACA</font><font color="green"><u>CTAAAATAA</u></font>aataactatcaacccagaagtctacatccagcaaaaatattcctcaggaagaccagacacggcggctcacacctgtaatcccagca<br>ctttgggaggccaaggcgggcagatcacaaggtccaggagattgagaccatcctggctaacatggtgaaaccccgtctctactgaaaatacaaaaaaatt<br>agccgggtgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtaaacctggaaggcggagcttgcagtgaggggaga<br>tcatgccactgcactccagcctgggcaacagaccaagactctgtctcaaaaaaaaaaaaaatatatatatatatatatattcttcaggaagatgataaaa<br>tgaaa	UCSC;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	59396896	59396897	1001413	0	-	pAlu13-58333517;1104685359979; RIP_Alu_chr13_058_01	NA;NA	NA;NA	SINE	Alu	Yg6	ccgctctttgcaataaattttactgctgctcattctttgggtccgcactgcctttatgagctataacaccgtgaaggttggcagcctcacttctaaagcc<br>agcgagaccacaaacccaccaggagagacaaacaactctggacgtgccactttatgaactgtaacagtcagtgcaaaggtctgcagcttcactcctgagg<br>ccagcgagaccaggaacccaccggaagggacaaacaactccagacgcctcaccttaaaagctgtaacacttacagtgaagctctgcagcttcactcaaac<br>ccagcgagaccacgaacccaccagaaggaagaaactcggaacacgtccgaacatcacaaggaacaaactccagataccatcttt<font color="green"><u>AAGAACTGTAACACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAACTGTAACACTC</u></font>actgcaaggtccgcaccaattctggacacaatagtacacttcccaacagtattttaaatttgttttagtattgccaatttga<br>taggcaaataaatgtcgtaatttaaaatgagaaatggggaaaacagctaacctaaactattacggaaagggaaatagcaagtgctccataaatgagtgag<br>agaaggagggtgactgaggatcagagatatttagcaattctgggtaaatctcaaaagattcatgaagttttgcactgataagagctggttagccttccat<br>ttttattccatattggtccagggatagaataaatagaacctcaaaagtccaaatgggaaaaattatatcccaattttattaactttataatagtattacc<br>aa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	61787419	61787420	1001414	0	+	pAlu13-60724055; RIP_Alu_chr13_060_01	NA	NA	SINE	Alu	Ya4b	atagctgtgtctctgtcatgtgaggaaatcatgggaaggcggctgttggcaatgcagcaagagagccctcaccagaaccgaaccttgtggacaacctgag<br>cttgaacttccatccttcagaattatgagaaaatcaatttctgttgtttaagccagtctatgatatttttgttatggcaggttaaacttactaatacact<br>cctaggtttattaacatggatccaagttcactgtaacttaactttaatgctttgaaagcattgaaaataaacttattccttcaaaaactctattaaccac<br>caaaaacattaatatgcttcaaattcccatgaagtaaatgcattaaacttcaggaaaacatgaggcttattaagttagtgtgtaa<font color="green"><u>AATTTAATTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCCTCTCAGAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AATTTAATTATTTTT</u></font>attatagagtataaaacatactgtataaattttttttaaaagatgataactttacagtcaaatggtaggttctgagaggag<br>tttaaatagtactttgtgtacttaggtaaatggtctcctctggaaaaaacgatatcagagttgaaagaaaaaagtacatatactacagaaaaaattctac<br>agactaaaccataaattattattttaaaaaattactactagaggcattaattttatactccttatattaactcagtctttatgtttgaaatgagtcacaa<br>tgcagtgatagaatgacttttacctgccattctatgccaattatttggagttgttagatgggataatggatgcttttgtctcttttgctctaataatagt<br>aatt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	67903471	67903472	1001415	0	-	pAlu13-66840092;1104685500433; RIP_Alu_chr13_066_01	NA;NA	NA;NA	SINE	Alu	Ye5	actccacagacatgtctgaaaagaaaaatgggcaggttaaggtgaggcaggtcaaagtgaggtcgcctggagtgaaaaaagtgatacgcaagtgatgatt<br>gtatccctagacctctcgtcaaatcagccagtcagtgacatgttctgcatttggccatgtactgtggaatatccaaataaatataggacacaggctttct<br>gctcaaagagcttaaagttcaagtcacatgccaacatatacagcattaaagtatgaacaataataacttaagagaaaaataggatgtaattcaaatggaa<br>tggaccaacttactgtaaaactcctgaaatgtttgagggctttctgcagaagattgaagttgatctggttcataaaggatgtta<font color="green"><u>AGAATACAGATAGATA<br></u></font><font color="red">TCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGA<br>GGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATACAGATAGATA</u></font>aagaaaaggtgttagagaataccatggaaaaacaggccagaataagcaaagctgttacg<br>ttagcaatgagtatgccttgtctttagaagaaaggaggaatacggcctgatgaaatgtcatggaataatttgataaatgtttggctaagaaggagtagat<br>ggctcatggaaaatattgaaaaagtgcagatgtttggacttgatctgttagataataaggaaatactgaagaaaatacaatttcatgcagagctaataca<br>tattaatgtaattcccagctactgcctggccattgtgcaggatgttatctcgctaaaataatttcccctgctttatagttctgaaggaagaggaagtctc<br>ctggagttatattatctaggattac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	78651688	78651689	1001416	0	+	pAlu13-77588325;1104685165797; RIP_Alu_chr13_077_02	NA;NA	NA;NA	SINE	Alu	Ya5	tcaagttttctaggaatagtgaaactagttaaaccaaatatgagagcccttttcaccaatgaggaatgagttcttttcatctactagtagtacttttcat<br>catttttcacctgctagaatggcaaaacaacaataataataatcatggcttggccattgtatagctaagtactctgttgataagaccataaattaattct<br>actttgtgataaatttgatagtatctagttaaatttaaaatgcaaaaagcatatgacctagtagttatatttcggctatctattctagagcaatacatgt<br>gatgttttcaagtaaaaggaagtatataaaagatgtttattgcagtcttggctttaaaaaaaatagagaaactttaattgccat<font color="green"><u>AAAAATGGGAATTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATGGGAATTGTT</u></font>aaacaagttttgacatattaatgctgcagaatgcactgcagcacttaaaaagagtaagataatagacagccaaaataaaattgct<br>agatcctatgttatttgtattttaaatttaatcagacattgtcacagacagtgtcaaattcatcacaaagtagaaccaagttataatcttaccagtagag<br>tatttacttatgtcatttatttctagaaagttctactagatgaattgttagaactacattccaattagcaccatgacatagagtaatacttttctataaa<br>tatgcaaaagaaaatattcacaaatataaaataagtgtaaatgtgtaaaaagaaaaataaacactaaattacaccatatggcctgatatgcatgaatag	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	80772343	80772344	1001417	0	+	pAlu13-79708980; RIP_Alu_chr13_079_02	NA	NA	SINE	Alu	Ya5	cttgaacccaggagatggaggttgcagtgagtcgagattgcaccactgcactccagcctgggtgacacagcgacactctgtcaaaaacaaaaacaaaaac<br>aaaaaatttataaagatgacatcttgccatcttgcccaggctggtctcaaagtcctgggctcaagcactcctcctgccttggcttcccaaagtgttggaa<br>ttacaggcatgagccacggtgccccactagcctgactttaatattttcatgaggcaatgcttcaatgctaacctccaatataatttcatgcatattttca<br>ggaaatacatgatgttttgctataaataagtcattggtgttatctgtttctactttgcatatagggatgaagagccagccattgtt<font color="green"><u>AGAAAGGCAATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AG<br>AAAGGCAATGTG</u></font>actcagaggcaagacaaagataagatccttcgtctctggtattcagagcaggtcctcaatttatggaaatagtgacattgttccattt<br>tccccgcatcccagtgaaagtattcaagtgactgtttacacacaactggtgatgttcacagttgtagcacttttgccctcaatgtgttatatctatagga<br>attcataagttgaaagttagtaagtggagatgcttttgtattgaaatccgatttctattaaccaagcgaagaggaaactgaaggtctatttattctagtt<br>ttagacacacttctaaaaagtttggctatctattgtgctcacaacactaaaaattaacaaataagtagaaatagtgccttagagggaaatagtgcctt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	22188495	22188496	1001418	0	+	pAlu13-21118494;1104685715564; RIP_Alu_chr13_021_03	NA;NA	NA;NA	SINE	Alu	Ya4b	accttcctccatgccccgcctcttcatcttctgcagggctcttagaggccatgcatgccagcaggcatagctagggtaggtctcttgttgacggagagct<br>gctgaggagaaacacacaatctacatttcactgactttcttgtgttaagagactgagatttttgtggttggttgtcacagcagctggcatggattacctt<br>gactaatacactggctatctattaatattccctatgtaaattctccaatgcagctctcaattatttactgtctatcattgccatcactttgaagaacatt<br>gtacagcaaaatgaaacccaatattatattattaaaagactgttgttgaggctttagctcagtaagccatattgcatgccctgat<font color="green"><u>AAGAATCAATAGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGTTTTGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGAACATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAATCAATAGGGG</u></font>aagtttctcttagttctagtgataataaaagacccctcaccttgtacccagcctgctcttttggacactctgcatcttggttgt<br>gatcatgttttcctcagttctgactctgtggctcatgtctagtaattgtgtgggctttctgatctgcattattctagttttctacctttgttttcctgcg<br>acaccacaatttcttgctaaaaaataaaaacaattccttttttaggtgtttattcaaatgtctcaaatattttttggtaaagaagctgatataaagatat<br>tttaaaatatgtagacttttatcattttgttttatttatttatttttttgagacggagtcctgtgcttcttgcccaggctggagtgcaatggggggatct<br>c	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	41858211	41858212	1001419	0	-	pAlu13-40794835; RIP_Alu_chr13_040_01	NA	NA	SINE	Alu	Ya5a2	cattctgtcacccaagctagagtgcaatctctgcttactgcagcctctgcttcccaggttcaagtgattctcctgcctgagcctcccgagtagctgggat<br>tacaggcctggctaatttttgcatttttttttttttttcagtagagatggagttttgccatgttggccaggctggtctcaaactcctgacctcaggtgat<br>cctcccacctcagcctcccaaagtgctgggattacagtcatgagccaccgtgctaggcctaatcagctaacttttaatttttttgtagagatggtgtctc<br>cccatgttgcccaggctggtcttgaactcatgggctgtaaagttctaatggaggctacagataggaaagtgttgatagaattaaggta<font color="green"><u>AAGGTTTATAGA<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAGGTTTATAGA</u></font>aaagttagtgtgtttgaacacaatgtaatgtg<br>gttgcgtcttacctgattgtgttatggggatggacattgtacccaactggggaatgtttcccccacctagtgctgtaaaacaggaggcatgtcaatctgc<br>cctttaagcaatattatttgaacatgctaaacgggaacaaataagattgtcagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggagg<br>ccgaggcgggtggatcacgaggtcaggagatcgagaccaaggtgaaaccccgtctctactaaaaatacaaaaagttagccgggcgtagtggcgggcgcct<br>gtggtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	42940089	42940090	1001420	0	+	pAlu13-41876724;1104685158428; RIP_Alu_chr13_041_03	NA;NA	NA;NA	SINE	Alu	Yb7	tttctcagtttgaacaatcttggcattcttaaaataaaactcttaattatatgcattatctctttattgtatgaataatacatgaatatttgctttttta<br>tttttggctactaaaatatttgccaatattaaatttttctcttggataaatattcaggaacaaaactataaggcagttatttctgtttgttgtcatgatc<br>gagttttgggatcagagctatgtaagtcttaaaaaaatgggaaagtttcagattttttctttgtctaaaacccataaatatcacagagattatctatgtc<br>ttgaatgtttgttgtaacttttctataaaattaatcaggccttatccactttcagggtgtaaatctttacctgtgttttcaatt<font color="green"><u>AAAAAAATAGTTTTTC<br></u></font><font color="red">GGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATAGTTTTTC</u></font>tatctcttcttgagcaaattctgttaattttaatttcctacaattattatagtcataagttttttacacag<br>tattcctttatgaaaaaatctgatctctatgtagggttataaactctctaaaaaattcccaatattatgcagttgtgctttctattctcacaggttagtt<br>tattttaacatctattcaatggtacatcttattcattctgatgcttttatttttttctaaataatttatttctgattattatttactcctttttaatttt<br>gtttttttagcttcttaagttgaatgcttttttgatttaattgaaatttttcttatgtgataacaatgttaaaagtaatggattttctattgaaagtgac<br>attggctatattt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	87392964	87392965	1001421	0	-	pAlu13-86229585;1104685253903; RIP_Alu_chr13_086_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	tatctgcaaatagttgtgccctgagcattacacataaaactaatccaaatctaaactcattataatccttgaaaaatatattctactgtatacattccat<br>attttaccataaacatttcctattgccagtcaccataaaaaggaaccccaaagaaatgtaaaggtgcatcttctatgcactattcacattaaaacagtca<br>agaaatatttttgattctacctcctaaatattttataaatacattaaatttcttccatacttagtatatttctttagttatggttttcattatttcatat<br>cagaaaaataaaaattttcattgcttctttttattcagcttccaaactaatacagacacaaatatacatttatacactaaaatt<font color="green"><u>AGAAATGTTCAGTTAA<br></u></font><font color="red">CAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGTTCAGTTAA</u></font>aagtaa<br>cctttatttaaaattctgatagcaattgcttaatggctctgcataacctttgtaccaatctatacttctagtatttcttccaaagtgttatattttttat<br>tttttgtgctgttgttagctaataatagtaatacatagaaaaagtgttcatataccctccttttaatatttttttattgtcataagtaaatttcccagac<br>aatgttcaagtcatgatataaaagcaggtatatttgtcttgtttctgaatagagggttatctcttgaattcagtagataggagaaaatttgagatagaat<br>tttgggtatgtttacacaagcaaattagaggagattcaaaaaagtatttaatcagattaattcattaaaattattaaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	92261287	92261288	1001422	0	+	pAlu13-91097923;1104685252576; RIP_Alu_chr13_091_02	NA;NA	NA;NA	SINE	Alu	Yg6	aaaagcagattgtatcatcttaaatacctacagctatctagggctgttcaggggactttgtggggtgagccaagagaaaatgttataattaaatagatat<br>gaggtaaaagagaaccaatatttgctcatttaaattatatttagttttgtgtaataagatttagaaagttccaaactgggatgatctgagctggtttcaa<br>tggtatttgctgttaatgattggacatcagttctgtgtatttgctttcccctttgatcatagggaaggtaaatttgtttatttagaatttgtttatttag<br>aattttgttagactaattgaatcagactattaataaaaagtcaaattcagtgtgacaacattgtaggtgtgtgccatcaaggcataa<font color="green"><u>AATTTAGATTTGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAG</font><font color="green"><u>AATTTAGATTTGA</u></font>ccagcaatctctaatgacacaggagttggtgatagtgtccttgtcagggaaggaaaatcaatctttcaggcatatt<br>aagtgaggtaaatattttgttgaagaggttctatcactgcaaattccagttaacagcaccagctctctgaaattaacaggccatgtaattctgaatctaa<br>taagattcgaatgctgtatcatattaggtgccagtagctaaagctctgagagccgggagtggtgggaagatgtaaacatgatcagttagcttctttttga<br>cagcaccttggaatgaactgacacaggcaacaaatgggatagaactgtgaaatagccaaaaacaatacaagaggctgagataaaaacagttcatttggca<br>acgtactgatt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:GPC5:NM:004466:2/8	
0	chr13	93828419	93828420	1001423	0	-	pAlu13-92665044;1104685252182; RIP_Alu_chr13_092_01	NA;NA	NA;NA	SINE	Alu	Ya5	ttttgcatcctgaaactttactaaatttgtttatcaaatctaggagcatttgggcagagattatggggttttctaggtataaaatcatactatctgcaaa<br>catatagtttaactttctatcttactattatgatgtcttttatttctttctcttgccttttcctctagctaggacttacagtactatgttgaataggaat<br>ggtgagagtgggctttcttgtcttgttctggctctcaagggaaatgcttccagctttttcccattctgtatgatgttggctgtgggcttgtcatagatgg<br>ctcttactattttgagaaatgtttcttcaagacctactttgtagagcctctagctttttaacatgaagctgtgctgaattttatcaaa<font color="green"><u>AACCTTTTCTGC<br></u></font><font color="red">GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAATGGTGAAACCCC<br>GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG<br>GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACCTTTTCT<br>GC</u></font>atgtattgagatgatcatggggtttttgtttttagttctgcttatatgatgaatcacatttattgatctgtgtgtgttgaaccaactttgcatccaag<br>gaataaagcccacttgattatggtgaattaagttttttacatgtggttggatttgggttgctagtattttgttgaggatttttgcatctgtgttcatcaa<br>ggatattggcctgaagttttattttgtgtgtttgtgtgtctcttccagattttgctatcaggatgatgctgccctcataaaatgagttaaagaggagctc<br>ttcctcatctatttcttggaatagtttcagtaggaatgatatcagcttttctttatttacctgtagaaattggctgtgaatccatttggt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	100082628	100082629	1001424	0	-	pAlu13-98919250;1104685250318; RIP_Alu_chr13_098_02	NA;NA	NA;NA	SINE	Alu	Yc1	atggggggtgccaggggctgggggaggggaaatggggagtcagtgtttcgtnnnnnnnnnnnnnnnnnnnnaaaatcaatggctctcacatccgttagga<br>tggctattgtcaaaacaaaatcacaagtgttggtgaggaggggcagaaatcagaacccctgtgcgctgttcgtgcgaatgtaaaacagtgcggcctctat<br>ggaaaacactatggtggctcctcagaaaattaagtctagaatcaccttaggacctggcaattccacttctgggtatgtatctaaaagaattgaaagcagg<br>gacttgaagagagatttacacaatcatgttcacggcagcattattcaccttagctgaaaggtggacgcaacccaagtgttcatc<font color="green"><u>AACAGATGGATGGATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AACAGATGGATGGATA</u></font>aagaaaacgtgatatatgcttacatcagaatatgattcggccttcaaaaagagggaaatcctgacatattctacaacag<br>gatgacccttgaggatgttatgccaagtgaaataagccaatcatgaaaggataaacactatatgaatcctcttgtatgaggtccctagagtcatcaaatt<br>cttagaaagtagaatggggggtgccaggggctgggggaggggaaatggggagtcagtgtttcgtgggtacagagtttctgtttgggaggaagataaagtt<br>ctggagatggatggtggtgatggttacacaacaatgtgaatgtatttaatgctatgtaatcatgtttaaatggtaaattttacattatatgtattttacc<br>acaat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	108669031	108669032	1001425	0	+	pAlu13-107505668; RIP_Alu_chr13_107_01	NA	NA	SINE	Alu	Ya4	ttccttggtacacattgactagtaacagtgtcctataggaattaacacactttatttcccataattatattttactttatatcttgctatttaattatac<br>tgcataagtgcttttccgtatgtttgttaaaacttgtggaatagggcattttacacttaaaaaatagccaaacatttgttttgcagctcatacctttcct<br>tcagcacatttcacattatatgattattgtttcatcaaatcattcatatcttttactatttgagtgcaaaattaactctcattacaaaaagaatagggag<br>aagaactaccttggatttttatttcagtaacctggctttccttctgagcaggcaaaacataattaaaggtcaaacctggttt<font color="green"><u>AAAGTATGTTCTAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGAGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGTATGTTCTAATCTG</u></font>atcgttaggcagtttgtctccagtggatgagcattcttgcactctgattgtttcatgtaggtggtagctggttgcaag<br>aaaggaggtgggtggctgatatgacgggtgggttcagattttatgacacttcctcatttccaggtagcattcttttcctacatgttgttaactaagtata<br>atcctcctcctgcctcctgggtgtggcttgtgcaggagtcattcttgacagttatctatgtttggtgccactcgtgagctgcctcctttcaatttggaga<br>atgctccaggtgtgctctttggcttccctggtgttgcaggaagtcagggaccccgaatggagggaccgggtagagctgtggcagaggaacataaattgtg<br>aaga	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	112993799	112993800	1001426	0	+	pAlu13-112080437;1104685140405; RIP_Alu_chr13_112_02	NA;NA	NA;NA	SINE	Alu	Ya4	tattccatctgttatggtagtctgtgatcagtgacctttgatgttactattgtaattgttttaaggtgccacaaacagtgcccatataagacagtgaact<br>tcacggagaaacattgtatgttctgactattccatcaaccaatcgtctccccacctccctccttctcttcagtcctctctattccctgagacacaacaat<br>attgaaattaggccagttaagaaccttacaatggcctctaagtgttccagtaaaagaaagagtcgcacatatctcactttaatcaaaagctagaaatgat<br>tagctgaaggaggaaggcatgtcaattgctgagatgccaaaacctaggcatcttgcaccaaatagccaagttgcaaatgcaaagaaaaaa<font color="green"><u>TTATTGAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TTATTGAACAG</u></font>gaattaaaagtgctactccagtgagcacacaaatgatgagaaagtgaagcagccttattgctgatgtgaa<br>gaaagtatgagtggtctggacaggagatgaaaccagcacaatattcccttaagccacagcctaatccagagcaaccccccaactctcttcagtgaagaga<br>gttgtggagactgagagaggtgaggaagctgcagaagaaaagttggaagctagcaggagtttagttcatgaggttgaaagaaagaagccgtctccataac<br>ataaaagtgcaaggtgaagcagcaagtgctgatggagaagctgcagcaagttctccagaagacccagctgaggtcactgatgcaggtggccacaataaca<br>acagattttcaacgtagaag	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr13	113520968	113520969	1001427	0	-	pAlu13-112607592;1104685140540; RIP_Alu_chr13_112_03	NA;NA	NA;NA	SINE	Alu	Ya5	gcccaactcggaagaaaatctcataaaagatacaaaagaatcaacaggtagctctgtttgatgacgttcatggcctggtggcattcaggaattattcaat<br>taaaataaatgaagacaaagaataagttctagaaaacttaaagcttttaaaacagtgaaataatatttgaattggttctcaagatagacctggtaaaaac<br>tgatttaagtgatgacgaaggataacagcagtgtttagtaaagaggaatgaaaacgactaaagcaggtaaataatggtgcacaggacacatagcaggact<br>tttgtgtttgaacccagcagtctgagggacaaacacacagggagagagaggtcaggctaaacaaggaacgaagccgatttctgttt<font color="green"><u>AGAAGTCACCCAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAAGTCACCCAGA</u></font>aggggctgctgaagagggactttctccgaggtcagcgctggtgtctgcttgtacggctagttaaatacctgaggcatttaagcaggg<br>atggtctctgacatctaccgaatgcctggtgtggctctctcaggaagcacagggccccaccgggcctcccacacatgcctgtgctgcctttaatttaaaa<br>tcgagggaagctcccatgaatccagtcaattcggaaaacatccctggctcaatgggccaccctgacatggcaaccgagggaacacagcaaggatgtgcgt<br>caggaggcgcacacacccttctaacacagagctagctctggggtgtgtggggcagcagcggctaacagcgtttctaccgacaaagcacacaggaattca	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ATP11A:NM:015205:25/30	
0	chr13	90947656	90947657	1001428	0	-	pAlu13-89784280;1104685252837; RIP_Alu_chr13_089_04	NA;NA	NA;NA	SINE	Alu	Yb7	tatacaccaagttttcttgagataagaataaattgaatagaaccatgataacctatcatttatattcctctatttacaacctaaatattctatgctacat<br>ttggtagttacacattattcccttaccaatactcttcactccactacattttagtagttctccaaaacaaactcaagtgtaataataagtttgttatttg<br>tactttacagttcaatagctgcagaatcaaataggaatgatttcttgttttcttaatgtagattttaagaatatacataaatatttttgttaaatttaag<br>aggatcatttatttgaattgcataaagaaaaatacaatttaaaagtaaattttcttgaactaaatgatcagtgttttttcaagcatg<font color="green"><u>TAATGAAACTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCATAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>TAATGAAACTGCA</u></font>cctctgtccttattttatgattaatacataagttagttttaaatatttaaacaaaatatacacttgcttgtttacgga<br>ctaaacattcagtagctttttcttaagccgaggatgttttgcaagtaacacagtaaaatgtattaaagaattcaaatttcagattgtggaagaagcttca<br>tttgaattcaatgaaaaaatttttgaatctgtaaagcagatcattctcttaaattttctttctgacaaaatagaagaaaatcgcttatgttaaagcaaaa<br>ttgatgctttaaacctagaagttttaaatataaaatagtttcataatttaacatttgtaaatacttaggggtatgctgaaagtaatttagcatgaaaaca<br>tcaacagaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr14	40312963	40312964	1001429	0	-	pAlu14-38302987;1104685636736; RIP_Alu_chr14_039_02	NA;NA	NA;NA	SINE	Alu	Ya4	ctaaagggcacattgcattaagcacatgatttacagctgtgatggtttagcatttgctctgctacttgagaataatggagagcaggttcttttaactaaa<br>gatacaatcgatcctgggagagcaaggagcaaggagtcagcaagtctagacacattccagagccatgagccctggattctatacaatccatgaggggttt<br>tatggcctgggctcagattatggtgtatcagggtattcttccaccctttagcacagagcttggcgctccaaaggccacaaggggttttagaccctggacc<br>ccagacattttccaggactcttttacattatgtcagacatgcaagccctgcctcagcttctcccaacactcagcttttcccaaaa<font color="green"><u>GAGTTGATAAGAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>GAGTTGCTAAGAATC</u></font>tcttttctagatcattttcaatgagtttgtattggtagaaaatactagtatctagatttattctgtattccagttg<br>tccatgaagaagacaaatgacacctggctgtaaaacttaacaagatatgttgtccattaagtgaaaagtgcccagcttgcaggcatgagatacaagaata<br>aagcttcttcaacaagattacttcagcacagcatgtgtcaaataagctaaaccactctattacctctcagaaattatagctgcattatcaatatccaaag<br>aacttgtctacaatttacatttccagaactgggcatacaatagagataatttcaaacaaagatgtctttattttccctgggatagacatgaagatgaagt<br>agaaaagat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr14	38359644	38359645	1001430	0	+	pAlu14-36349682;1104685636232; RIP_Alu_chr14_037_01	NA;NA	NA;NA	SINE	Alu	Yi6	tcttgtttgggaggagcaggagatgaggtcaggaaggtgggagatcacactgaatataattattcaatgccaggctgaggattgtcaatctatttttctc<br>cctataataacgttagggtaaacaaaataaaattatttcaagaaacatatacaatgaaataataaaacataaatgaaaactaccagacaaggggaaatac<br>aaattaaaataagaagacaagaacagatgacattgctaaggaaaaactatttataagcctcctagtggccaaagcaaaaaggaacataagattgataaaa<br>ttattactgtccatgagaaaaaaactaattctatgagaaaagtgacaccaaatttaaaagaaatttcttatgtgggttt<font color="green"><u>AATAATGTATAGAAAATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAGAAAAAAAAAAAAGA</font><font color="green"><u>AATAATGTATAGAAAATTCTTT</u></font>taatcatatagatttatttaaatgtccttttataaaataagagagaaaatactgtgtatag<br>tggtgctttctaagtagaatgtgcatacagtcacctgggatctcattaaaatacaaatcctcttttgattactatagccttatagtatgtatcaagttgg<br>gtaatgtgatgtctccagctttgttctttttgcttaggattgctttggcaattcaagctcttttttagttccatatgaattttaaagtagtgatacggtt<br>tggctgtgtacccacccaaatctcatcttgagttgtagctcccataatccgcatgttttgtgggagggacccagtgggtgataattgaatcatgggggca<br>gtttcccccatactgttc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr14	56437926	56437927	1001431	0	-	pAlu14-54427953;1104685122315; RIP_Alu_chr14_055_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	aaaagcattagatttggatacagacagatttgttcagatccccaactctgcccttaactaaccgttttacctcagaaaagtaactaaagccctctgagcc<br>ccagtttttaaaatcaatgcattcatttaaaaaatacttattggtgaacaaagagacttagttcttgtagctctgcagctcaccctctgggttggagtgg<br>agggatgagggagttgctcaatctgggtgctggtccagtgagtggtgggcagtcagagggaggtacagaggagagaactgaaagactttgagtaactgga<br>ggctggaggtgcaatggagaatggtcccaaatgaggctggagaaggaagcagaggttggattatgaaggctttttaagctttgttc<font color="green"><u>AAGAATTTGGACTT<br></u></font><font color="red">CAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGGACTT</u></font>tatttgaagggaaa<br>tgaagagcaatcacagggtcttaatcagaagaatgtgacccagtttgcatcctacaaggatctctctggctgctgtgtggggaatggattggatgagaat<br>gggtgggagggtaagaccaggagcagcaatgccagctagcagaaggtggttgcaatagtgcatgaaagatcatgtggcctggaccagggacaaggcagcc<br>aggcaccaggaaagtgggtggactccagggatgtttagaggttgggatcaacagggctggatgatgctgatgggcggagtggggagaggcaagaatcatg<br>agcaggactcaagtttgggcaacagaatggacagtgatgctattaactgagacagacacacaggacacaagg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr14	60575500	60575501	1001432	0	-	pAlu14-58565528;1104685123410; RIP_Alu_chr14_059_01	NA;NA	NA;NA	SINE	Alu	Ya5	catttttgctgtgtcctcagatggcacagagagggacaaatcaagctctctggtacctcttctcataaggggactagtcccatcataccaaggacccacc<br>ttcatgacctaattacctcccaaaggcctcatctcaaaataccatcacattggggtttaagactgtaatatatgaattctggagagacacaaatattcag<br>tccataacatgctgaacatttctacctggacactaacctaagaaaagaaagctgcaatctacggagacggagaaagaaaagtcaaacttgaaaaggcaag<br>taaaaggggttatcaaacaattttgtgaacaattatgtctgttaaaaaaactattttctacttttcttctgtaataagttggttttt<font color="green"><u>AAAAAATCAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAATCAATAT</u></font>tacttctactattgttgctatcataaaattagaaataaattttgtatttgtcttaaattcattcaatctgtatataatatttata<br>tgtataaattttaatttcttctttccccccacaggaaagttccatctccttacacaggttttagccaggctatcttaaaaactcaaagctccttatttaa<br>agtgaaacacaaaattgaaaagttccttatctcaaaaagggttttttaaaaaaactctttagtaagttttaactattgctttagtatgttttacagagat<br>taatcctaaaagaataattatcaaaataacctgtcacccaatggtttgatgatttttaatccatggattcatttttttgtaacactaaaaggaaagctct<br>ct	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:C14orf135:NM:022495:1/10	
0	chr14	95024622	95024623	1001433	0	-	pAlu14-93014647;Ya5-MLS68; RIP_Alu_chr14_094_01	GTCATAAGCTGAACACCAGGTTTG	AGCACAGGCTCCACTTATGCTG	SINE	Alu	Ya5	atttaaggaagcagggataagttgcctgaccaggaaggccagggtggatgtggggaagcagagggcttgactgcctctctgcccctaggaaataccactg<br>ggccagatggggcagctgctgtgacaccactgatgtccccggcagggagccgctttttccagcatcccagaaactgcctgaactgtgctgtaggcatgaa<br>tcccactccctgacaccctcctctgctccactgcatcctaaattgcaacccagccctttctcaatggctgtcttggtctcccattccagcacaggctcca<br>cttatgctgccctcctgctaactgctcccaatccccttcccattccctggattccaaatggagccaggaaattaatctgccctt<font color="green"><u>AAAAAGGCTGTCCTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGGCTGTCCTTG</u></font>ttttgaatttgattggcaatgcaataatggtcatcatgaaaaatatgggaaagtaaaaaaaacctggagaagaaaataaaatcatt<br>tgcaaacctggtgttcagcttatgactagatataattggtttccttccagtcttgtaagaaatgggtatgtgctcatacagaacagcaacaacaaagctc<br>ttccagtcttggtttggatggaggtaggaagactatagatgctacagtccaaagagagctccatgcaaaaattccagagtaggtggtcaagaacaggtct<br>cctgattcttaaatgctttactcatgtgaaagaggactgaaaggtgttgagaggtggagactgagaaggaattacaaagaggaaggagagaagtgctt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID: 15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	NA	224	NA	intergenic
0	chr14	60741401	60741402	1001434	0	+	pAlu14-58731441; RIP_Alu_chr14_059_02	NA	NA	SINE	Alu	Yi6	cccttagattaagtgacttggaggaacttgatttagtaaaatggccagacagccttttggagcatcaacattttttttaagaagtttaactgtaaagaga<br>agagaggcacatgggtagctcgaggggaataagtcacatgaaaagttatttttaatgggtaacatgggtgacacttgtggctttaaaagtcacactccaa<br>ctgagaaatgttgataaaaaggagaaaaaggaaaatagtgtaacattcctgaaaaaactgtcatttaagactcctttgaaacatgggcaccaaagctagt<br>ctagtagaggatttattatcagtgagaggacagagtcctattacagcagaaaagtaggaggagagggttatgaaag<font color="green"><u>AATTCATTGAAATGGTTCACTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>GGAAAA</font><font color="green"><u>AATTCATTGAAATGGTTCACTCAT</u></font>ttattgatcttttttttctgtagtatccaatctgccattcattgtctctattgcaattttcagttcagta<br>aattgcttctcatttccatgaaactattttcagagtacctcttttttaattgacagtctgcaattgttttattcattcaatgtcatttcatatcttggtt<br>agtttctaattttgagctaatgaatactgagtctccctctttttaacttctgaattaaaaaaaaagtcatcttatttttctctgttcatttttacacttt<br>atttagcctaagtatctgaaattggctttgctagaaattacaattagttcactgttgttttctttcagtcccagacaaaaaagaaaaattttagatttct<br>ttcttt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPM1A:NM:177951:2/4	
0	chr15	26872524	26872525	1001435	0	-	pAlu15-24290570; RIP_Alu_chr15_024_01	NA	NA	SINE	Alu	Yc1	cacaacatcctcaccaggagtagattccatctcaagaaaccactctttgctcatccataggaagcaactcctcattcattcaagtttaatcatgagattc<br>cagaaattcagggaaatcttcaagtttcacttctagttctgttgctattcccaccacatctgcaatgacttgaacccctcaaagtcatccatgagggctg<br>gaatccacatcttccaaactcctcttggtgttgatattttgacctcctcctataaatcatgaatgttcttactgacatctagaatgacatctagtccttt<br>ccagaatgttttcagtttactttgcccagatccgtaaaaacaatcactgtctatggcagctacagccttgtgaaatgtatttcttaaat<font color="green"><u>AATAAAACTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA<br>ATAAATAAATAAATAAATA</font><font color="green"><u>AATAAAACTTG</u></font>aaagtcagtttctccttgatctatgggctgtagaatggatgttgtgttagcagacatgaaaacaacattc<br>atctctttgtacatatccattagagctcttgagtgaccaggtacattgaaaatgagcagtaacattttgaaaggaatgttttttctgagcagaaggtctc<br>aactgtgggttaaaaatattcagttttgtaaacgtgttgacacccaggttttattgttggattttttgagcataggcggagtagattagcagaattctta<br>agggccctgggattttcaaaatggtgggtgagcattggcttcaacttaaagtcagcagctgcaattagcccctagcaagagagtcagcctgtcatttgaa<br>gctccgaagccagacaatg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GABRB3:NM:021912:3/9	
0	chr15	44502015	44502016	1001436	0	-	pAlu15-42081141; RIP_Alu_chr15_042_01	NA	NA	SINE	Alu	Yb7	aaacttgttccctagaattcaaggaagagccaggcgtatttagaataacataaaaacttaattcgaaaactcacattttgtgattaccagattagggaaa<br>tggaatggtgtttggaaggagaattgcactagttatagaggaaaatgaccttctgtgagagttggatgccctgtggttgctcttagattaatttgcctcc<br>ttacttgtcactgatcacacctacttcttgttgcagaaaaactgttcctttccatagctatagtcttaacctgttgtctaaataatgtagctaaatcagc<br>tgagcacatgggaatcagagactaaaagaagcacattaggcattcaataaatatttgctgaatgaatgaaatgctcagtaagcattaa<font color="green"><u>AAGATGATGATA<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATGATGATA</u></font>atgacaat<br>ggttaggatgaagaagaaaaggaaaggggacagaggaaggcatgaatagctgtaactctaaggcaattggctcaccaattacactgctgaagcgataaca<br>taacaatcacagttttcaggtactcggatgctggttctccagtttgtgtatcatctcagatttttggtttagattttcccttaaactgactcccttttag<br>tcctccatttaatgtctattaatccacagagaaaatgaaggaacaagagattaatagtagctaaaactttccaatgttttctttgtgcaaaggcttatct<br>cattttactctcacagtctctcatagagagggactattattatacctgttttacaaataaggaaactgagccttcgcagc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	60657244	60657245	1001437	0	-	pAlu15-58236395; RIP_Alu_chr15_058_01	NA	NA	SINE	Alu	Ya5	actgtttctttcattaaacaaagttattaatcagtcaggagagagacttttcacattctgaatttacaaactgtgctttcttaagttaaatggcatgtta<br>ggagtatttctgatatgaaattggaaacttgcagacaccagaaggcattgcttatctttgtaaatacacatgttccaattaaaataggtactaaaatatt<br>ttggtggcacctcaaaactcccaatttagatttaatttagattaaaacacttactctttttaataaagttataaaattaattattaaaattgcctattga<br>agattaaaggcagtggaacgtttattttccttacaaaacaattttgtcttcaataagtgtgattgtgttaatcaattatgc<font color="green"><u>TATTAAAAATACAACTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAATTCCACTGCCA</font><font color="green"><u>TATTAAA</u></font>gtcatgacagtttttataattatagaaattatacctagctgcttatatagccataatcctgcaataagtataaata<br>attatctctattaattcagtttgcagttactctctattaaatcccgagttaaatggcaatttggggaccttcatttaaaatcctactaaatctctgttgt<br>tccatctgactgccaaagccccacatatgcacctcctactgttgattccagaaaccaatttatgaataaaatagtttttaaaccacaagtatttaaaagg<br>tccatttaagcttgaggtttgaggctctcaagaaaaaaggaaagagagtgtacacattgggtagaggatgctgacgaaagagatagaacaaatcttggtg<br>tctgg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ANXA2:NM:004039:3/13	
0	chr15	36096322	36096323	1001438	0	-	pAlu15-33675447;1104685379493; RIP_Alu_chr15_033_01	NA;NA	NA;NA	SINE	Alu	Ya5	ctaagagttttagttattgtagcattataagtttcaatatctaggaaagcacaaatctcctgatgacttttctacttttgaatttccctgacttatttat<br>gtatatttattcttcaaaaatgtcttttacatcagcttgtctagttgccaagaaaccatttggatgccattaaatgtatcgattattttagtaacaattg<br>atacctgcagtactgagtctatgtaatattgaaaaattcctttctagttatagcatcttagcatttccacttagtaacatgtcgtttcctttatatcaat<br>cttacatatttattgttttatttactgctaggtatcttaccattttgttgcctttttaaattgaaaagttttgaaatgttcattaaa<font color="green"><u>AATACTGAAACTG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATA<br>CTGAAACTG</u></font>acatataaatacagaaatcacattttgagacagaaaagagattacaaataaacaacacttaatcacacaaacaaaaatcagacttctcatt<br>tgcaacgtctgaagttacaaaatgctagaagtcaaaaagagattactgatggaaaaaaatagtcatatatcaggaaggaaaatcattttagactaaaaaa<br>aaaccagagaggaatcacagagtcactctgtgtcaaaaataaataaataaataaggactaaccgaatataaatgagccaaaaatcagacttcataatgat<br>gaacgatgaagaggagaagggagcatgacatacatgtcaaatgatagatagatagacatagacactgaaagataacagaaatatgttatatgaatg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr15	39691606	39691607	1001439	0	+	pAlu15-37270743;1104685378596; RIP_Alu_chr15_037_03	NA;NA	NA;NA	SINE	Alu	Yc1	aagctgtaccttgtgctagatagggaatcatacccttcccaaatttgcctgggaaaaagcagagactccaagcaaggcgtgaggtcccaggctgctgagc<br>taagcctactattctcatgatcagggcagctcaggtttctctgcagtggggaatagcaaactctctgaaatatctaatatcaaaaccgtatgcctttaag<br>gtgaatagtcatggacacattctcctttgggagaaaaaagaaaaaagttctactaaaactaaagtcccagctgatttccgacacactcagcaatgaacaa<br>attgttaccaggccagccttccaggctagaggttctgacttcactccctcaggaccctcctcccaagtggaaactaacttatttt<font color="green"><u>TAAATGTCTGTGTTC<br></u></font><font color="red">GGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGT<br>GGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACT<br>GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAAAAATAAAAATAAAAAAAATAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAATGTCT<br>GTGTTC</u></font>cctgtcaatgcaggcagacattttaaggagactttagacactatgcattgttacatgaataaccacatctgcatgcaaagcagtaagagatact<br>aactccaatagaccaaatgtgtgcttttccccattgctttcaactccaagaatctgaacaaacagaaaaggtcattctgatcttttttcttcaaagatta<br>acaataggaaaacaggaatagtatattttcttatgataaaagcagaagcttgttggcaacttcttttgaattcttactaccaaccacagtactggtgtta<br>aattaaaaaattactcatgacacttgtgtcaaagaacacaatttcaacaaattgagttttaaagatctaattggcttttactagtgattca	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr15	82035666	82035667	1001440	0	-	pAlu15-79611584; RIP_Alu_chr15_079_02	NA	NA	SINE	Alu	Ya5	ccaatttcgaaaacgttaaaacatgagaaaatgggcctcttaagatgaaaaagttataagacgttaaggaggaaatcaaatacacattaataagtgatta<br>tgaaaatgagactattacatatgaaaacctatgggaagagtaccaaatttccacgagaaaaaacaaaaccctaaatgttctggttttttactaagacaaa<br>aaaaaataagccctctaggaaagtgaaagaacaagaaaacagacatgaggaaagacaataataatgaatggagacaaaattagaaataaacaaatctgga<br>aaaggataacacatgtcctaggaagagattatataaaacagaattaactcctccagaatattaaaaaatatggacatctgcccagttagaaaa<font color="green"><u>TAAGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAGGAAAGAAGT</font><font color="green"><u>TAAGCTT</u></font>aactttgaagccaatttctatcaaagagtacaaccagaggaaacctatggctaaggagattcataacattc<br>gtacatatatatatatatatatatttttttttcacgttctgaattcaatatcactttattggtaaaagaatattgtgcctgaacaggaattaacctacca<br>atggaagttagattattaggaatctattaataaatatataagaatagataacataagaaaaacaataatagataatgtaagaagaatgtcattgcaagac<br>attttcaaaatgtatttaacatccatggatgcacctagaggacattatgctaagtgaaataagtcaatcacaaaaagacaaatactgtatgattccactt<br>atatgaggtatttagagcagtg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	78936672	78936673	1001441	0	+	pAlu15-76512598;1104685618267; RIP_Alu_chr15_076_01	NA;NA	NA;NA	SINE	Alu	Ya5	acgatgtcaggagatcgagaccatcctggctaacacggtgaaacctcgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaattagctgggcatggtg<br>gcgggtacctgtagttccagctacttgggaggctgaggcaggagaatggtgtgaacccaggaggcagagcttgcagtgagcggagattgcaccactgcac<br>tccagcctgggtgacagagcgagactctgtctcaaaaaaaaaaaagattctattcacaatagtaacaaaaaccttagaatatatctagcaaaatatacgt<br>aaggcctttcatgaagagtgttgctatggtctgaatctgtcttccaaaacacatttgttaaaatttaattgccaagataatatt<font color="green"><u>AAGAGGTAGGGCCTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAGGTAGGGCCTTT</u></font>aaggagtgattaagtcataatggcaagtcctcatagatgacattagtgtcttataaaagggcttgtgtggggggtttatc<br>tgttccttctgctgcatgagaacatagcatttgtcccctccagaggagccagcattcaaggcaccatcttggaagcagataccaggccctcactagacac<br>tgtacctgctggtgccttgatcttggacttcccaacctccagaactgagaaaataaacttctgttgtttgtaaattacccagtctctggtattttgttat<br>agcactacaaaaggcctaagacaaatacaaaaatactcaggaagagctgactaaattgaaatatagaccatatatattatgaatgggaggactcaatact<br>ataa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr15	100810991	100810992	1001442	0	-	pAlu15-98403706;1104685149308; RIP_Alu_chr15_098_01	NA;NA	NA;NA	SINE	Alu	Yc1	gtggaagcaacccaaagtgtccacagatggatgagtaggtaaataaatatagcgtataggtataatggaatattattcagccttaaaaaggaaaacaatt<br>ctgacacatgctgtaacatagatgagccgtgaagacattatgctacgtgaaataagccagtcaccaaagaacaaatactgtgattccacttacgtagggt<br>agtgaattcacagagacggaaagtcgaatagcgctggccagatggctgagagggaggagggaatgaagagttgtctaatgggtacagagtttcagcttta<br>caagatgaagaaagttttggggataggtagtagtgatagtgtataacagtgtgaatatatttaatgccacttaattgtaagcttaaa<font color="green"><u>AATGTTTAAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AATG<br>TTTAAAATGG</u></font>gtaaaattttatgttatgcatattttaccacaatttttaaaaacatcctacatatcacctgccttttcagtatccataagctcatcaagg<br>taggactatgtctacaccatcaacattttgtcagtgcctggtacgcatgcaggagatgatccagaaatatttgtgtagtcagtgaatgcataaatgaatg<br>actgatgccatataccagcatcctttgcgaaggattcagtgctgaagtcacagaaacaaacactggctttacttttttaattcctaggcaaatttgcttc<br>tggagagccttttgtattctaagcacatcccacggatatggtgtattaaactctgtttgaaagtgtttatgcataaatataataatacacttacact	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ADAMTS17:NM:139057:4/22	
0	chr15	100812818	100812819	1001443	0	+	pAlu15-98405546;1104685149304; RIP_Alu_chr15_098_02	NA;NA	NA;NA	SINE	Alu	Ya5	tagaatggatttctctatctctgcaaaaaagtcattgggattttgatagaaattgcattgaatctgtaaactgctttggataacattgatatcttaacaa<br>taagccttccactccatgaacatgatggctttccatttatgtcttctttaatttccttcattgatgttttacagctttccatgtaaaactctatccctta<br>tttggttaattcctaagtattttattctttttgatgctgctgaagacagaactgttttcttaattgtcttttcagattattgttagcatatagaaatgca<br>actgatttttgtggttggtttagtacgtggctactttgcaaagaatttattagcattctctctgtctctctctctgtgtgtgt<font color="green"><u>AAGATTTAGGGTTTTCT<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTATAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGATTCAGGGTTTTCT</u></font>acatgtaataaatatgtcatctgtgaacagagatcattttactacttcttttcttatttggaggccttcaatttctttttct<br>tgcctaactgctctagctagaacttccagtgttatgttgaacagaagtagcaaaagcaggcactcttgccttgttccagattttaaagaaaaagctttca<br>gtctttcaccacggagtgtattattagctgtgagtttttcatatatgacctttataatgttgaggtagtttccttctattcctagtctattgagtgcttt<br>tatcatgaaaggctgctcaattttatcaaattcttttcctgtataaattgggatgatcattttctcttttcattttgttaatcaagtatatcactttttt<br>t	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ADAMTS17:NM:139057:4/22	
0	chr16	22846018	22846019	1001444	0	+	pAlu16-22773455;1104685117330; RIP_Alu_chr16_022_01	NA;NA	NA;NA	SINE	Alu	Ya5	tagacaaatcatgtgtatacttaatataccattttatactgctattcatatcagtacatatagtagatataatatgctttatattccattttataacttg<br>caattttatttaacaatgtgatgcagatatctctccatgccaataagtatatctacagaatcattttaaatgctcagaattattttaaatagcatctagt<br>tggatagatatactattatttatacaatcattaaccaaatcgcctactgatagacatttagattgctcccactttttgctctttaacaatgaaaggacag<br>cagcaagtatcgtacccaatgattttcctcagaataaatttatttcagaggaattttggggtttgtgggtaaccatgcttt<font color="green"><u>AAAAAGTATCCATTTTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGTGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>GTATCCATTTTTTG</u></font>atacaaattaccaagttttccccacccctatggcaatagagctgaagcatttatacttccctagcacagtctgaaaggactttttt<br>ccacatccttgtcaacattgactattagcaacctatttatttgctctttgtcaatctaatgcatgaaaactatctccttttaatttgaattttggggtat<br>ttaaaaatatttattagccatttgcattcattttctgaaatttttggttaattttttccctgttggagatatttctttccatttttaaaagaggatgttt<br>aatgattaatgctgcttatactggattgactttatcttttagtgttttattacttcagatgtttctagtgagctgaatttggcttggttctacat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:HS3ST2:NM:006043:1/2	
0	chr16	73075311	73075312	1001445	0	+	pAlu16-72810817;1104685106508; RIP_Alu_chr16_071_02	NA;NA	NA;NA	SINE	Alu	Ya5	ggccacctttccaaagagtgggcttttttgattcacctttgcttctcccattcactgttgagtccccatttgaaggggattcacaagcagtgctctggtc<br>ctcagccagaccctgccctgttttattctgtaattatttcctaccttcaaacaaacaatgaggaagaccacacctccctccagttacacatctgggagtc<br>cgcaccaggatttcctctgtcacccaatttttccactgtctggacaatttttatagtttcaccagcaagggcaaaatatattgacagtcctttcccacaa<br>ggtgtaaaagttctctgctttccccaaatatacctctggatttcctatctgttgaaggaaaaaccagcttcgactgcctccgtt<font color="green"><u>AAAAAAGGGTGTGCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>AGGGTGTGCAGGGC</u></font>ggctgaggtgaccctactaccgtcatttctgccattctttacttgaacaacattttttaagtgggcaaaatactatcttatgaaaa<br>acaaaccaacaggggcccaggtaacacacattcatatagtcagttacacagactgaaagtcttcatcaatgcccatctcaattacgttatcaaataacat<br>aaggggacactattcaagattccatcagaacagagatggcatttaaaagcagtcgcttgagtagtgacaccaacctcctgccgcacacactgaaatccat<br>gagcctcttctaaagtgtccaaaagttgacctgacactttaacgctgatgcagatactccacaaaaaaaagcggagctgttaaaagggaagcagaaac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ZFHX3:NM:006885:1/10	
0	chr16	83666375	83666376	1001446	0	+	pAlu16-83405281;1104685107429; RIP_Alu_chr16_082_01	NA;NA	NA;NA	SINE	Alu	Yb7	tcagtgtcctcacttacagaatagggattttggtaatgaaggccaccagctccgtgcatgacaaggtgctgaatgctttctgtttattatcacgccgaat<br>ccttatgatttctttgtgaggtgcattctactagaccctccagttctcagataaggaagctgaaggttagagagctaaggtaatgcacccaggttacagc<br>aggttatcctcaagttccccacggagtagtgacattttgtcaccattgatgctatattactgataatgatcaatagataggttactggaaaggggtccag<br>atccagatcccaagagagtgttcttggatctcatgcaagaaagaattcagggcgagtccatagagtaaagtgaaagcaagtttatt<font color="green"><u>AAGAAAGTAAAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>TAAATAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTAAAGGA</u></font>ataaaagaatggctgctctataggcagagcaacagcatgagctgctagttggccatttttatggtta<br>tctcttgattatatgctaaacaaaaggtggattattcttgggttttccgggaaaggggtgggcagttcccagaactgagagtttctcccccttttagacc<br>atataggtaacttcctgatgttaccatggcatttgtaaactgtcatggcactggtgggagtgtcttttgacatgctaatgtattataattagcatataat<br>gagcagtgaaaatgaccagaggtcactcttgttgccgtcttggttttggtaggttttggccagcttctttactgcaacctgttttatcagcaaggtcttc<br>ctgatctaaatcttgtgct	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CDH13:NM:001257:8/14	
0	chr17	30893860	30893861	1001447	0	-	pAlu17-30742559;1104685008941; RIP_Alu_chr17_027_03	NA;NA	NA;NA	SINE	Alu	Yg6	atagccatgaacaggataaacaaggttcctgtcctcaggatgcttagacaaatgctctaattcagctcttcttttttcatttcctgctcaatttattgac<br>ttctgccaccccttcatttgttgccctttcccagcatcctctaccttcagccagaaacccctgttttctcagtagctttgtcctgttaatatcccagaag<br>cctacagccgcatcatctgctcctttttgatttcctccattctgtgaacatggatggagcacgggctgccctcagtcccagctctgccgctccccacctt<br>ggatgcagaggctcccattcctctgttggaaagatcacacagatgtgtctcagaggcttggtacacagtgcctgcctgatttggttaaa<font color="green"><u>AAGAAGCTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGACATGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAGCTTAA</u></font>aagagaaagaccaaagagggaagcttttacaagttgctttttaaagctttggaagtttgtgtttgaggcttcaaacagataactaatt<br>aagttttagcactccctgtgattcggacaacaaccgtaactactgtcatgttactactattaattgattctatttggttccaatgacacgagtcaaaaaa<br>tgttttcccaactgtggttggactcagttgactttccaatcatatcactcccctccttcagtggctactcaagatcaggtctgaggtcactcccacagcc<br>tacacgatgtggccccacctcctcactctgcattttcctgcacttacctgcaggctcacctgcaggccacaccagctttccttggcttcctcaaggaaag<br>c	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MYO1D:NM:015194:21/22	
0	chr17	66094734	66094986	1001448	0	+	pAlu17-63077263; RIP_Alu_chr17_063_04	NA	NA	SINE	Alu	Y	ggggtttcaccatgttggccaggctggtctcaaactcctgacctcaaatgatccgcccgcctcggcctcccaaagtgttgggtttacaggcgtaagccag<br>cgtgcccagcctatctgtggtatttttagtgtgatgtctagaacttcatatacttttttggattactttaattgtagggctgtatccaaactgatcaaat<br>gctctcggaggtaactatttggagaagtgacttcactgattgattaaaataaatgactggcatggaataagnnnnnnnnnnnnnnnnnnnnactggcatg<br>gaataaggattaaaatatattaatctgaaacatttaaaattgcattaatgttataacagcctaaagcaaaactaatgaatcacataaaa<font color="green"><u>AATCCCCCACG<br></u></font><font color="red">TGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGCCGGGCGGATCATGAGGTCAGGAGATTGGGACCATCCTGGCTAACACG<br>ATGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGCCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTG<br>TGAACCCGGCAGGTGGAGCTTGTAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACGGAACGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AATCCCCCACG<br></u></font>ctgttgtccttactagtttactttgtgctagacacttttgcatgtatatgcatacaacttttattctgtttttaaactttgcattacatatacattcttc<br>catattatatgatcttcattaaaatagttaaatggctgcataaaaaaccatgtggttcctggaccattatgctgttccctcattccccttttgtttttaa<br>tggaatagagcaaagaacatcttctgtattattgtcaagaatagtgagaggtgacagcgtgctggcagtcctcacagccctcgcttgctctcggcgcctc<br>ctctccctgggctcccactttggcggcacttgaggagcccttcagcccaccactgcactgtgggagcccctttctgggctggccaaggc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	66088276	66088578	1001449	0	+	pAlu17-63105691; RIP_Alu_chr17_063_05	NA	NA	SINE	Alu	Y	tgagccaagttccactttcagaaatgctatgggcaaagcttcatgatgtttatgaattcatacataaagactataaatttcagccaggggcaatggctca<br>tgctgataacagctactcgggaggctgaggaaggacaatcgtttgaggctaggaattagagaccagcctgggtaacacagctagattccccgctgtcttc<br>ccctctaaaaataaatacataaataaattagtgtggtggcatgcacctgtaatcctagctactaggaagcctgaggcagggaggatggtttgaacccagg<br>agatcgaggctgcagtgagctatgattatgcaattgcaccccagccttggcaatagagaaagaccccactctctatttttttaaaaaaagg<font color="green"><u>CTGTAAATT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAGGAGTTCAAGACCATCCTGGCTAACATGG<br>TGAAACCCTGTCTCTATTAAAAATACAAAAAATTAGCCAGGTGTGGAGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGA<br>GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGAGGGCGCCTGTGTACTCCAGCCTGGGCAAGAGTGAGTGAGACTCCATCTTAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>CTGTAAATT</u></font>tctgaatgagttcttaagatgaaatacatcttacttgtgcccacttccttttcttagaaattaactccaaaggccagtcacggtgg<br>ctcatgcctgtaatcctagcactttaggaggccaaggtgggtggatcacctgaggtcaagagagtgagaccagcctggccaacatagtgaaaccccatct<br>ctactaaaaatacaaaaattagcctggcgtggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaagca<br>gatcttacagtgagccgagatcatgccactgcactccagcctgggcaaccgagcaagaccccatctcaagaaaaaaaaaaaaaagaaagaaattaactcc<br>aaaat	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	14527655	14527656	1001450	0	+	pAlu17-14470710;1104685551722; RIP_Alu_chr17_014_04	NA;NA	NA;NA	SINE	Alu	Ya5	gtgatcgtgggtgtgagtgagctgagaaagctcagtttcctttgctcgtcatggcctcttcttttgagcctctcacagcacaacatgataacaacatgac<br>aggaatatgagataaggagtttgtggaacaaagacacaagctacaagtcacattggattttcaggctaagaacctttattatgcagacaacaaatattcc<br>ataatgtggcctatactacgtaagtacaaatacaggtgaagcatctttgtatggtacacacttcaatttgatcactctgtctaccctgtgtacaaatgga<br>atgcactggacttttatttgtcttactgatattggcccattattattcagtctcctgttgtagcaattgtcactatcttcctctt<font color="green"><u>AAAGCTTCCATTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGCTTCCATTTGC</u></font>ttgtgctgaccgtttcctatcttctctccaattgctaaagctcttatattctttgttgagcaggtgatcaacttaggtgacaaa<br>ttcacacttctcaccagctcccttaaaactactgacagcaactgatgtctatggagtgacttactgtatctgtcaagagctctgctaggcacttaacata<br>cattatgtcatttaatcaaaacaatgccttactttaactattattattgttcctgttgcatagacaaaagcccgagactcagtaatactctgtgacttgc<br>ccaaggtcacagagctaggcagggatggacctgggttcaatgacaggctgtatgacttcaagtcttatactttttgatttgagacactgccttagaacac<br>t	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr18	54706194	54706195	1001451	0	+	pAlu18-54491185;1104685560273; RIP_Alu_chr18_052_01	NA;ATCCATCCCTGATTTCATTCC	NA;TTCTCATCGGAATCTACCAGAA	SINE	Alu	Yb7	atccatagtgtacacacgcccgcagcccctccttctgatggtttaacttggagcaatcctcaatggttgtgcatagccagatacacgcactgtgcacaca<br>ggcactgggttctgggtcacctccctggcatcccaggcctctgtctgcttccttcagtgcttccttcttcagccgtccctccctggatcccagccacctg<br>agctccatccatccctgatttcattccttttttttcctcttccagctctagtccacagccttcctccccaggacatgtgattcaagcctgaagcatacaa<br>tgggagcacaaaggaggaggggacagagaaaagaaatgagcatcagccttgggaatgtctcctctgactgtagagtcaggagacatt<font color="green"><u>AAGATGAACATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGATGAACATTC</u></font>actggaacatatacattctggtagattccgatgagaattaagcccattcattcatctggtaaatatctagtgaacatctac<br>catgcatcaggcagagaactaggtgctgggattgtagtggggaaggcaacagttgtgacacctgcccttatgggctcacagtctagtgggctggggtggg<br>gactaagccagccacaaattgtaacatgagcagtgatggaaacaagggcagctgagacccaatagcccagggaaggagtgggcaaggtcaacccggggtc<br>tctgaaggaagataaggagctggatgttggtggagcagttggaagcgggaagagcttctagagaagaaaatagcacgtgtgaggtccctgaggcagaagg<br>gagagt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;60	NA;550	NA;231	NA;NA	intergenic
0	chr18	62173797	62173798	1001452	0	-	pAlu18-61958756;1104685562324; RIP_Alu_chr18_060_02	NA;NA	NA;NA	SINE	Alu	Yh9	attttgctaagtgaaataaaccagacacagaaggacaaatcctacataataccaattatatggtaaatatagtcaaactcataaaattatggaggcgatg<br>gataggcttatggcgtaaattgaagtaaggacttcacaaccgtatttttctccaaacttaccaaattatatagatataacatatacaagtttttgtatct<br>caaaaaattatataaaaattttaaatttgataaatcattttaagattagaagcaatatctgtcaaaaagattatgtattaatatcttcatggtcatcatt<br>ttgtagttgtacgattttgagtgatttttgtctgcaatgctctgcttctgaattataaagacatctatttattatatgaagattaa<font color="green"><u>AAGCAATTCCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGG<br>TGAAACCCCGCCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGCAATTCCTTTTG</u></font>gtaaaaatttttaaaaagtgcatagttaaattatactgaaacaaacatattagaagtaataaaaatggaaaaatgtata<br>gacttgaatttgcacaaaataaaaaatgataaggcaaatataaaaatggaaaaaattgtaagtacagtggaaataatgtctttaaaatgcagaaatgcag<br>aaacccaatatacatatgaaaaattctccattgccactaaaatgaaagaaatgcaattcagaccatgtcatttctctccttgaaatctgcgtcgttcttt<br>tttttcaataaaaattgaagtccttatgtattagtccattcttgcactgctatgaagatatgcctgagactgagtactttccgaagaaatgaggtgtagt<br>tggctca	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr18	73953940	73953941	1001453	0	-	pAlu18-73716907;1104685089338; RIP_Alu_chr18_072_01	NA;NA	NA;NA	SINE	Alu	Yi6	tgtaccttgttagtatggtggattactatcttagtacatttgggctgctataacaaaataccataaatgtgtcccttataaacaacagaaatttatttgt<br>cacagttctgaaggctgggaagtccaaaatcaaggcactggcagaattagtgactggtgagggcccactttctggttcatagaaagcatcttctcactgt<br>gtcctcacatggtagaagggatgagggagttctctggaatctctagtatcattcacaagggctgtaccctcatgacctaataactttcaaaggcccatct<br>ccaaataccatcactttgagggctctgctttcatgacttaataacttctaaaggcacacctccaaataccatcactttgagtgtt<font color="green"><u>AAGATTTAGCTTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGATTTAGCTTATG</u></font>atttttgagggagatataaacattcagtctataacaattatattgattgattttcaaatattaaactagaataa<br>acttctggaactaaactcctggaactcctggaataaacttctcatgatcattacacacagacatattttagattttttttttttactgaatgctatttga<br>taatattttcttaaagatctttacatttatattcatgagtgctattggtctatagttttctttttttgcactgtctctgattttagtatcaaggcactac<br>tgacttcacaaaatgaagtgggaagggtttctttctcttctatcttctggaagaaattgtgtactattggtgttaattttttaaatgattggtagatttt<br>gctagtaaaat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr18	65138871	65138872	1001454	0	-	pAlu18-64923829; RIP_Alu_chr18_063_01	NA	NA	SINE	Alu	Ya5	acacggtattaaaatttaggaatgtctgactcctaaggcccacagttgggcctatttgtagtgtgacttgggacaagtcacttaaccattctgagccata<br>gtttcctcatctgtaaaatggcaatactaatatctaccttgcatttttattctaaatatggctgatacaaagaacacattaaatagtgcttttccatgtg<br>ttggaaaaattatttacaatttatttcaatgaagttcactaataaattatttctttttcaatatatatattcacttttatatatagtttaataaggcaat<br>agctattaatatacacattgaaataatttcaccaatactagtttttttacaatgacaggttttcttacaatgacagattttctt<font color="green"><u>AAAATGACAGGATTCC<br></u></font><font color="red">GGCCGGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAATGACAGGATTCC</u></font>tatacatatatttggagaaattattgagcaaggccaatctaaattacttagaaagttaaaaaataaaatatg<br>taaattaagcttaataatattactctgaaatacagaatacttaaaactttgaaaaatttagtgtttattctatgaccaagtcactttctcacatccaatg<br>aacctattctctctctctcttccataaaaatttctctggtactttcattagtccttttcggaacttttaaaaatttagtgtagctagtattctagttctc<br>aatcaaatgcatgttacacatcaagctaccataatgtactggtttttttttttttattgtgttttgtttgtctaaggcaggtcttcaaaagcatgataat<br>tttcatcaagga	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	36512547	36512548	1001455	0	+	pAlu18-36400538;1104685178894; RIP_Alu_chr18_034_01	NA;NA	NA;NA	SINE	Alu	Ya5	tttgagccctgtaatctttttacaaagatcgacccatgtgattcttatgagtgccccagatgagagccaaggccctaaaggaaaagatggctaacatgac<br>tggattctccaaaaaagtatattgtcattgacattattcatcacatggctacacaaaagtcaatgtcaaaattatttttagaattcggggctagaatata<br>aaataatatgtacagtttagctattacctatctactagacataattaaacattatacacttgaaaaatatataccaatacttttttaaaatgtgcttctt<br>tggtgttcagattataagtgattttcaatttattttaacaattataagtgattgttcaactatttacctcagtttcaagaaatctc<font color="green"><u>AAAAGCAAATTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGCAAATTTGA</u></font>aactcaagtcatggcaactagatagacaagttttaattcatattttgtcttccccttatcattgaagcagatttttaaaaat<br>tatacattattatttcaagtatacattttagtataaatttctttactgccatagtgtaaaacataaaagaaaagaacagaagagaaggtgtaggggcaat<br>gaataaagggaaaaaattatgtctcaaaaaggggaggatgaaaacaaggggaaagaaaggaaatgagacggcaagaaggaaagcatagcaggctcattca<br>agaggaactcctctgaacctgctgctatcatacattcagaaacacctgtgtttggaaatgaccaagtcattttcagcccaagtgaggggtgcttcaagaa<br>tgag	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr18	1235791	1235792	1001456	0	+	pAlu18-1225790;1104685493412; RIP_Alu_chr18_001_01	NA;NA	NA;NA	SINE	Alu	Yc2	ttttgttcattcttattcttctgcttctttgtactaaattagtgttttctagattatatatgttacaaacctaatgatatattgttataattattacttt<br>gtacaactttatgtcctttaaagaagctgagaaaagaaagaagagcaattaaatatttatgccttgttatattaacctttttagttctcttcatttgttc<br>cagtgaattccaggtactattggtatcatttaattattccaatactgttttgctctaattcaccttatttgtgatattttctaatatatcacatttctat<br>gtgttacaggcccaataatacagttatatacatattattcatatgattgcttttaagtcagttaagaaatttgcaaatatagtttttaaa<font color="green"><u>AATAATTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGAAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AATAATTACA</u></font>taaacaagtacttttactggcactctattttatcatgtggacttgaactatggtctgagttcactttcatttagaa<br>ctttaatgtttgttacaaggaatatctgcttacaacaaattctgtccatttttgtttatttgaagatgcttttatttcactgtcattttttaaagttagt<br>tttcttggatatatgattatttctcgacagggtttttttttcctttcaatttattactttactttgaatttgactttccactgcctctgtcctccattgt<br>ttctaatgagaagtcagctgcaaatatttcaaagcaaatattaaatattaatattaaatattacagtttacttgaagtgatgggttgtttttctcttgct<br>gttctcagaatttt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr19	57425530	57425531	1001457	0	+	pAlu19-62101553;1104685154230; RIP_Alu_chr19_062_01	NA;NA	NA;NA	SINE	Alu	Y	cccgtagtcccagctattcaggaggctgaggtgggacaatcgcctgagcctgagaagtcgaggctgcagtgagctgagatccttgcaccactacactcca<br>gcctgggtgacaggcagagtgagacctgtatcaaaaaaaataaaaataaaaaaaaggaaattcatggagaactttggactctccccagacttagctacta<br>atagcctaccaaagaccagcagccttaccaataacacagtcaattaacacatattttgtatgttacatgtattatatactatactcctgaagtaaagtaa<br>gctagagaaaagaaaatgttattaagataatcataatgaagaaaaaatatgttcactcttcactaagtggaagcagatcatcttaa<font color="green"><u>AAGTCTTCATCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGTCTTCATCCTCG</u></font>gtcatcttccattaagtaggcagcggagaaggaggaagaggaggggttggtcttgctatggcaggggtgtcagaggcaaagaaa<br>acctgtatataagcggactcgcacatttcaaacctgtgttgtttgagggtcaactgtatagtatataatgcaatataatatgtaatataggccaggtgtg<br>gtggctcacgcctgtaatcccattacattgggaggccgatgtcgggcagattactgaggtcaggagttcgagaccagcctgaccaacatggagaaaaacc<br>gtnnnnnnnnnnnnnnnnnnnncagtggctcatacctgtcactccagcactttgggaggccaaagtaggtggatcactggagcccaggagcttgagacca<br>ac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr19	20745988	20745989	1001458	0	-	pAlu19-20522022;1104685514400; RIP_Alu_chr19_020_02	NA;NA	NA;NA	SINE	Alu	Y	ggttgcagtgagccaagatcatgccattgaactccagcctgggccacagggtgattccgtctcaaaaaaaaaaaaaaaaagtaagcacttccttcttatg<br>taaacactgtgtttgagtaatttccctggatttttctaacacttagtttcaaaaaccaagtaaataactctgacatggaaatcaaagcttgaacctagtg<br>actccaagctaaggctgatattaagcctgcaacaggatgttactaaagactcagtttttttctggggagcctcccctgcacatgtcccagcctgctcacc<br>ccagccatagaaggaggctttatcctgagagaagctacagagccctggaaagctggggccccacaggcagatgcagctgaggtt<font color="green"><u>AAGATGAAAGGAAACT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAAGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGATGAAAGGAAACT</u></font>tagagggtcttattgatgatgaagttgttatgttttgtggcactttctacactttgtaaaataaaaaatattaatttatgtta<br>aaaaaatgaattccaaaaaaaattgcaacagcagaaaataccaactaatttaagatctttatggcttgcaaagatgtaagcagaaaagggctttcttttt<br>agggaggagcaaacaagattagaaaggaggtgggaggtgaatggcaaacggagagtgaaaaagtcatattttagatcagaggatgtcttaccctgaaatc<br>agcatgttcttaggagggacataaaatagggttgtatgctgactcagactgagggtagctcaaagttcaggagcctgagggagggagataagcttaagaa<br>g	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ZNF737:NM:001159293:1/4	
0	chr1	146346739	146347040	1001459	0	-	pAlu1-87235024; RIP_Alu_chr1_087_02	NA	NA	SINE	Alu	Y	ttaaaatttgcattttaaaaagtatttaaaatataaacttttatatcaagaaataagagaaacaaagcaaagtcaaatatacatatacataaaaacttca<br>aaatttatggctgagtttagatataccacaatccacctagaagataggtatttataccagggctctatttctgtgtgactcaaaggcaccaaaagggcat<br>tataaatattaataaaaacctcgaaagctaaaccacatttttatggagttagaagcacaaactgaaagaattaatttgagaaggagacggtggtattttt<br>ctatggttgttttgttttgcttttactgagaaatccagtagttccaattctgtcacaaaaaggaaaattgtatagcttgttgtttt<font color="green"><u>GAAAATGGGTGATG<br></u></font><font color="red">TGGCCGGGTGCGGTGGCTCACGCCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAT<br>GGTGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCCGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAATGGGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAGAAA<br>AGAAAA</font><font color="green"><u>GAAAATGGGTGATG</u></font>cttgggccagatgcggtggctcacgcctgtaatcccaacactttgggaggccaaggcaggcagatcacgaggtcaggagc<br>tcgagaccagcctggccaacatagtgaaaccccgtctccactaaaaatacaataaattagccaggcgtggtggcgggtgcctgtaatcccagctactcgg<br>gaggctgaggcaggagaatcgcctgaacctgggaggcagaggttgcagtgagccaagactgtgacactgcactccaacccgggcaatagtgcgagactct<br>gtctcaaaaaaaaaaagaaaaaagaaagaaaagaaaacggccaatgcatgattgtgtcaggccacacacaaacatgcagaggatcaagaatattgttttc<br>agcaca	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	105054083	105054084	1001460	0	+	pAlu1-104211118; RIP_Alu_chr1_104_01	NA	NA	SINE	Alu	Ya5	atattagtaaagaataaatgataaatgaccaatgattccaccttataaaatttaaaaaaatagaacaaatgcagtccgaagcaaaaagaaagtaattcag<br>aacagaaattaataaaattgaaaacagcaaaacaatatggaaaaattaaaaaaatgctcacttttggtatgataaataaaactgacaaacctgtatcagg<br>tacaagaaaaaaaaaaaggaatgtaaacacacatttccaatatcagaatgagaaaagagaaattactacagatattacagatgttaagtggataatgaga<br>aatattatggacaattctttgccaaaattattcaacttacatataatttaaaaattctacacaaattaccaaattcattttttagtgat<font color="green"><u>AAGAATAGCCC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGCCC</u></font>gtattttcaactgtgtcaccttcagaaatgtatccaaactcgccatgattcacttactatgatacaggaat<br>attaatagttcatacactagaagattgtatgagggttaaaggaattaacacatggaaagtccttcaaatagtatctatcacataatatgagtcatgtatg<br>tgtgtcaccattattaatttccttgattttaacttttttttttgtttgtttttggcttttagggttttttctttcagctaagctgtcctttttaaaatgt<br>gtgaagtgtttaattcaacaatttcattatttcaataaattgtagtttaattatttgatataattttccaaaacattgaagtcatatatatgaattaaga<br>caatccaccagagcatat	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	1584472	1647681	1001461	0	-	pAlu1-1516710; RIP_Alu_chr1_001_01	NA	NA	SINE	Alu	Ya3	ggggtttcaccatgttggccaggatggccttgaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgctaggattacaggcataagcctc<br>cgtgcccggcttcatgtgaaatttttgaagtgaggtttctttgcatgacactttatttctcattagggaagcatgctagagtgaaagaaaaagaaagaga<br>gcacgaacgtcggaaacggcatcgagaagaacaggataaagctcgccgggaatgggaaagacagaagagaagggagatggcaagggagcattccaggaga<br>gaaaggtgagtcggctgggtcagttgaggactttataaaagggctgtggtagtgtgtcccatcctagaaatgaagaagaatttggcaat<font color="green"><u>AGAAGTCACAT<br></u></font><font color="red">CTGAGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCATGAGGTGAGGAGATGGAGACCATCCTGGCTGACA<br>TGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGAAGGTGGAGCTTGCATTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAGA</font><font color="green"><u>AG<br>AAGTCACAT</u></font>gtagaagtcacatttggtgcagaagtggtagacatggaaacagcacagtgaacgctggacgaggctgaccaagagaactgtcctgagggag<br>tgagttttcactgcatctggaagtaagaacgggtgtgatttgattgagggaagacaatgaagggatcagaaatctgcatgtccggccgggcgcggtggct<br>catgcctgtaatcctagcactttaggaggctgaggtggttggatcccttgagcctggaggtcaaggctgcagtaagctatgaccatgctattgcactcca<br>gcctggttgacagagtgagactgtctcaaaaaaaggagaagggagatcctaaaaaccttgaaacagtctggaattcgggaccctggactcccaggactcc<br>tggccattagt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CDK11B:NM:033489:6/21	
0	chr1	228959931	228959932	1001462	0	-	pAlu1-225332040;1104685074864; RIP_Alu_chr1_225_02	NA;NA	NA;NA	SINE	Alu	Y	agcagacctaccctaaaagagtggccaaaggttgttctctacgtagaaagaaaacaataaaagaagcaagtttgaaacatcaggaaggatgaaagaagac<br>agtaagcaaaaaaaaaaaatgggtaaatacaataaactttcttctcctcttgagatttctaaataatgtttgacgttgaaactaaaactataacattgtt<br>tggtgtgactcttaatgtatatagaggaatacttgagacaagtatgttctaaatggcagatgcaagggatgtaaaggcaggtaagattttttttgcttca<br>cacaaattggcaaaatatgactgtaagactatatatagactacaataagtcatatatagaaaatgtaatacttagagcaaccattaaa<font color="green"><u>AACTATACAAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AACTATACAAAG</u></font>aaatatattcaaaaacacgatagataaaccaaaataaaatttttaaaaatgtttgttacccacaataaggcaggaaagag<br>caaacagggaaaagaaaagcagagagaacaaacagaaaacaaaaacataaaacaacagacttaagtcctaacatatcaataattactttaaacacaaatg<br>atctaaatacaccaattataagacagagattggcaaattagaaaccatgacctaaatacagcttgcctaaagacattcacttctaatacaataatataag<br>caggttgaaagtaaaataatagaaaaagatatactacacaaacattgaccccaaaaaacaaaaagcaggactgacaacattaatatcagataaaacagac<br>tacagagc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	234070565	234070566	1001463	0	+	pAlu1-230445829;1104685320621; RIP_Alu_chr1_230_03	NA;NA	NA;NA	SINE	Alu	Ya5	aagcaaataatttccctgataataactagtcagctagatgggttatactattgagttacatgtgcatttatcttgttttacaaattaccattagacaaga<br>aaaaaatcaattattacagagatattttaatgagctgtcttaaaaatacacttcttgttgaagtaaaatatccaaaatgaaatgaatgttaattataagt<br>gtacagcttgatgaattattacaaaatgaatatacctttctttactgcatctagagcaagaaacagaatattactggcatgtaagtgattttttcagata<br>ccactatacaggagatcttattaattttaaaataatcaaaaaagccactggctttccctctgaagcaaaggtagctccctatgcagat<font color="green"><u>AAACAATGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAACAATGTTTC</u></font>aatgaaaatctaagtggatcctgtcttttacaaagaagctgtgtctagcctggtattctgccaggatgatcaagatagcttacatac<br>attctaatcagtgtatcatgtgaaaaatgggatcttatcatgcttcttggaagctttaggttttctttgtaattttaatatccctttgcaagagctgact<br>tccaggcaagatctctgtgctgaaattcccatatgttatgtatgtttacttgcttttccactagataccttaacatttcagtcatgattattttaaagtt<br>tcattctggtgaaaccaggttgtctctgcatctggttctattgatggctttatttcttcacaatgagctgggttttccttgccctttttttttttttttt<br>t	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SLC35F3:NM:173508:2/8	
0	chr1	227602278	227602279	1001464	0	+	pAlu1-223987819;1104685057095; RIP_Alu_chr1_223_01	NA;NA	NA;NA	SINE	Alu	Ya5	cttcttatgtgggtgctgcccatgactccccaaaacaattacaacagtaacattggagatcactgatcacagatcagtataacagaaataataatgatga<br>aaaagtttgaaatattgtgagaattacagaaacgtgacacagagaccatgaaatgagcacatgctgttagaaaaatgtcaaagataggctggggcatggt<br>ggctcatacctgtcaccccagcactttgggaggccaaggtgagagaatcacttgagcccaggagttcaagacagtctgggcaacatagtgacagcctcat<br>ctcttaaaaaaaaaaaaaaaagttaaaccaggtatgcctttaattgcagagcattcccaatcactcagcccaccactgctccttt<font color="green"><u>AAGAAGGCTCTTTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAGGCTCTTTGTG</u></font>gatgttctgtggttctagccctgcacattcccagtttcctcttgcatgattctaccttccaccgaaacagagcaagatctgc<br>ttaagatcctataaaaatgactttggcatgtgccctttgcctgggaacagctttttcagttgctgctgctgctgtgtaatatgttaggttacatggacta<br>ccattttttgttaaagagaatgacttccaagttcagtaggtgcttcttgaaaatatagttccccgtgatgcaataataattgattctgttatttcctatt<br>cttgttcttatgtatgtgacatatgacatgtaactgagacacagttcctatatttaatatttgttgtttgttccacaatcttttcatagatgggattagg<br>ttg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	93498227	93498228	1001465	0	-	pAlu1-92835741;1104685457968; RIP_Alu_chr1_093_02	NA;NA	NA;NA	SINE	Alu	Ya5	aacggggcatgcatctgatccagatgtgcatcaggtaaaccaagagaggtctgatacaaagctcttcaacctcctaaccctctctaagaagcacagcaga<br>gcatcagaataaatggatagaaaggtagtttgtaaattaaaattgcaaatgctcaacgataataaatattgctttttatctacatgtcatttaatggcct<br>taataaaggtaatctatacagattgcctaagagaaatatttaaataacaagttatttataatacttactatttaaccagaaaaatacgttaatcagattc<br>atgaaggtaaagcacagaacaactctaagttattttataactatgatagtaatacaagctcaaaaatatttaccgaatgtagaatt<font color="green"><u>AGAAAAAGGAATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAGAAAA</font><font color="green"><u>AGAAAAAGGAATCT</u></font>aattttgaagaaaacactttaagctgtggtgatgggctgctagacactatcaaatgcagt<br>aaattctaccatccattgttctattagtaagaaatgcctgttatctgaacatttccctttttaatccggtaccatataattatcataggatttcatatat<br>tatttcattattataggatttcaattctgtgttcatggggcaaatctggagagccatatgaagaccctgggactcatgtagtaatccaaaatttttgaat<br>ggtgacattacattctattttatttcaatgatattatcacatttcagtgctttgaagactcagtttctagaatatcttatttataatgtacacatggtat<br>ttgattaccaacatatcctattctct	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	162761323	162761324	1001466	0	-	pAlu1-159457341;1104685472339; RIP_Alu_chr1_159_01	NA;NA	NA;NA	SINE	Alu	Ya5	agttctctttcaagacttaagctgattccaggcaaatatgttaatagttaaaacccaaaaagagcctggaaccatcagtaatctattagcaccaacaaca<br>aagcatcaaaaatatttatttgtcctcacatgagaacagtaggcatttaatatacaattgcacatgtcacaatatatgtaaaagaaacagacaaaatcaa<br>ttctgacttactcagtaccttccacataagaagcaccaatcaacggttaaagtcacttgagagggtatgctaaaaagttgccaaatgcagacacctacca<br>agctagcttagttaatatgcatgtggttaaataattgaaagtggatcaatcttaaatgtttaacatgtcctctgtcttaatcattt<font color="green"><u>AAAAATGCCAAATG<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCCGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATGCCAAATG</u></font>caactagtagaaaaatggtttgattggcttcatcctccacacatttttcacagaagtgcaaatgacaggtaaaacaagcaac<br>agaagaggctgagagactaaacgagcaaccctggaattattatgagctggttattctgcaccccaaccatgccttcataggaaaagattaattttctctg<br>ggtttctgaagagtatgttagctctctagcactgagctaaatgaaacgggattgttttctctccaccgtcctaatgttcatgggtgttcaaatttgtagg<br>caaaaggcttgtacagacaaaacacctggagtataagacatgatcacgtggtcaggagcaaaatattgggcactgacgataaatacgaacagtaggcaaa<br>gatg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:HSD17B7:NM:016371:1/9	
0	chr1	178397611	178397612	1001467	0	-	pAlu1-174978468;1104685261669; RIP_Alu_chr1_175_01	NA;NA	NA;NA	SINE	Alu	Yc1	agtaagtagtctatcatactttcttctccaaaggcaggcagactgcctgtaactggtttggctggggcaagtgtgtagttttgattagaattttgtaata<br>tcttaaactgggcctggtgccacagctcatgcctataatcccagcactttaggaggctaaggcaggaggattacttgagcccaggagttcaaggttacag<br>tgagctatgatggcaccactgcacgctagcctgagcaacagagcaagaccttgtctcttaaaaatatatatatattcaatatatatgtagaatatatata<br>tagagagaacatcaataagttctgaattaagatcttttatttaaagctatcacagatgaactctaaatggatcatagacttatatataa<font color="green"><u>AAGCTAAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGCTAAAATC</u></font>ataaaacttctaaaagaaaacataagtgaaaatctcttgggacataaaaaattcctctgcaaacattgcttatcaggatgtaaaatggc<br>acagcctctttggaaaagtttggtagtttcttacaaacctaaacatgtacataccatagaacccagcaattatactcttgggcatttaccccatagaagg<br>gaaaacacgttcacaaaaacctgtatctaactgttcacagcagctttattcatattaatgatagcaaaaactggaaacaacccaaacgtctttcaatggc<br>tgaatggttaaacaaaccgtagtacatccatacaatgaaatactactcagcaaccgaagaaacaaactactgatacatgtaacaatttggatggacctca<br>	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RASAL2:NM:004841:3/16	
0	chr1	191580782	191580783	1001468	0	+	pAlu1-188047238;1104685258146; RIP_Alu_chr1_188_01	NA;NA	NA;NA	SINE	Alu	Ya5	gcagataggctagaggcatgttttgctgtacaaaagatgttttaagataaatatccagtaataatagtagttatcttctataattaatgtttaaatatgg<br>taataatattttcaccttatagaaataaaaatttttctattatttacaaactgtaaacaagtgacttctattttgaatatttactagttcatacattttg<br>tacttcttccttgtatttatataaaatttatagtgtcagatataatgaaaaatacaattgcaaattgttagagaaaagtatagcattttaaagattaaaa<br>attatatataaaatcatgtagaagttttataactctttgcttatgtaaaatttactggaatcattctaatattctctagaataaatt<font color="green"><u>TAAAATAAAAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA<br>AATAAAATAAAA</font><font color="green"><u>TAAAATAAAAGTA</u></font>aaatttatgctaaataattaactatttaatgattaacgtaaaaatggatgaatggttaggttaggttacatatat<br>cagactcttctccagagtacagtagttcagtttgacttcaatttaccccattttgtgtgaagctcttttccagaatattttgataaagaagaacaagtga<br>aaattaaataaagcaaacaaacaggaatggaacacatatgtatataacatgtatgtctgtatgtatcattatatttatgtttctatgcatatatgcaaat<br>gtgtgtatgtacttgtgtgtgtgtgtgtataagtatttacttctccaaattcagtgagaaacactaatctatcaatactgaaaaactagtgaatctcaag<br>catgataaaaaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	208691493	208691494	1001469	0	-	pAlu1-205334897;1104685478513; RIP_Alu_chr1_205_01	NA;NA	NA;NA	SINE	Alu	Ya4	ttgagggtatgaaaatccaatctgtctggagtggtgtggggagtttatacactatggatctctttatataattgggagcaatgtggcctggatggctaga<br>gtgatgggtaagagcaccttccccaactcaggactggcagcaggaaagtaaaaaccctgatgagctttcatctttgtcccctctaaggcaaacaaaatgg<br>aaaactcatgccctgtgtatttcaaattctcaacctgatacatcaaccatagttatagatattagttatagcaataaccctgctggttccacagaattaa<br>gaaagtcagcagaaaacttctgcagttccttaagagaggcaaggtagaatttgccttagcagaaaaactaaatcagacttgcaaataa<font color="green"><u>AAGTAAAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGCGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGTAAAATCTG</u></font>taagaccacattttttaaaacatttgtttattcattcattcattcatttatttacccattgacatagtttggctgtgccccca<br>cccaaatctcatcttgacttttactcccataattcccacatgttgtaggagggacctggtgggagataatttgaatcatgggggtggtttcccacatact<br>gttcttgtggtagtgaataagtctcacaagatctgatggttttatcaggggtttccactttggcatcttcctcattttctcttgcagccaccatgtaaga<br>agtgcctttcacttcctgccatgattctaaggcctccccagccatgtggaactgtatgtccaattaaacctatttttcttcccagtctcaggtatgtctt<br>tatca	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr1	47542236	47542532	1001470	0	+	pAlu1-46743171; RIP_Alu_chr1_047_01	NA	NA	SINE	Alu	Y	ttcttctcacttttcttcatagttcatctaattaaagttttgtcaattttgttaatcttctcaaagaaataactttttgtttgttaatttttttctattg<br>tttttcctgcttttattttatttacctcagctctaatctttatcatttccttccttcagtagctttgggtttcatttgcccttctttttccagttcatta<br>aagtgtacagttaggttattgatttaaggaatttattttttaatgaagacatttaagctataaaaatctcattaagcactgcttttgctgaatcccataa<br>cattgggtaagttgttttcattttcatttgcctcaaaatattttctaatgtcttttatgatttattccttgtccctttggttgttt<font color="green"><u>AAGAATGTCTTGTT<br></u></font><font color="red">GGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGACCTTGCAGTGAGCCGAGATCGCGCCCCTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>ATGTCTTGTT</u></font>taatattcatgttttgtgaattttcccgttttacttctgatattgatttctagttttattctatggagaggtatttttgtatgatttcaa<br>tctttttaaatttattgagactttttttgtgacttaccatatgatctatgctaaagaatgacccatgtgtacttgagaagaacatgtaatctgctgttgt<br>taggtggagcttttagaacatgtctgtttggcataattatagtgttgttcaagttctctatttccttattaattttttgtatcattgttctgtccattat<br>tgaaagggatgtagtgaattctccaattataattttagaactgtctatttctcccttcaatgctgtcagcttttgcctcatatactgtggggttct	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CYP4Z1:NM:178134:2/12	
0	chr1	80299105	80299106	1001471	0	-	pAlu1-79690157;1104685761267; RIP_Alu_chr1_080_02	NA;NA	NA;NA	SINE	Alu	Yb9	gaaagtgaggtatagaaacagccagattggttacagcttggcgtttgccttatttgaacataatttgaacagttggccactttgattggcccaaactctg<br>tgatcagcacaagagtagctacagcctgcttacatgtccatttaggttatagttcatgatctacagagaaacctttaggtcaaacttaaaatatgtaaga<br>aggcagcttcagactaaacaatttaacagcttcaaagccataacttttggaattatattttctactagatagaaatctaaaaattaacatgcaacttcac<br>aatatctggcttctaatctattagataagcagcaaaaccaagcacaggtacattctcctagagaattaaacaatcattccatgtgcttataa<font color="green"><u>AACAATGC<br></u></font><font color="red">GGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAGAAAATTAGCCGGGCGC<br>GGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT<br>GCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAA</font><font color="green"><u>AACAATGC</u></font>atcagtatgaaa<br>tttaaagtatatgccattcctttttgcttatttctaagaattgtataattttttatgaaataaagaataacagtaaaaaagtagacaccccactattaag<br>aacaatggttgaaacagacattatttaataatgttttaggggaatgtgattcacttctggaaaaactataacagaactccagatggtggagatagaataa<br>cacgaaaaatattattaattgcagaaagaggcaaaattccttgaaatttatgcataaatcctgatactagaaaatattcattcatatactaacaggagta<br>tatatagaaagaataaaagttgctaaatgagaccaggacagtgattatcattagctacatggggctgagtattcctaggg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr20	53761851	53761852	1001472	0	+	pAlu20-54400272;1104685525155; RIP_Alu_chr20_053_02	NA;NA	NA;NA	SINE	Alu	Ya5	acctttctcattgatcttcaactaggtttacttgcccccttatttgcctattttctgttcccaaatctgtcagttcaaggcaaaaccatgacctcaccct<br>aacaattgcattctgggcatgttagttgtataatcacattgccctgtcacgctggcatctttaatcattttaaaggtagtcttgacttggccatattctt<br>gtttaactactttaagcaaattaattagctttgtggggcccccaatgccattaattcatggtctataaaacctcagacctaattgaactttttaatattg<br>tgtctttactacctgatataagtgtcttttaaattattagaattcctacagttaatgccttattaaatagctacatatatatggaagtat<font color="green"><u>GAAAAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GAAAAATTTC</u></font>caagattgcaaagtaatcaaaacccagattaaatcaaggatgattttatatctgttttattatatgtttaaaaattaccaaga<br>agtttgagtatgtaatgagaagtagtaggaatgcctcatatttctagctggcaaagaatacatgtggtgttaggtatctgagagtttatcagttaatttc<br>cattaactaaagtatatgaacaatgaaatactatcttaaagctacaataaaatgtcatttcaaaacttgtaagataactgaaatcaaagggacagataat<br>gacaagtgttggcaaagatgtggagaaattggtatcctaatacacagctggtgggaatgcaaagtggtatgtcactttggaaaacaatctggtagttctc<br>agccatt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr21	32784236	32784237	1001473	0	-	pAlu21-31704668;1104685580334; RIP_Alu_chr21_031_02	NA;NA	NA;NA	SINE	Alu	Yb7	tctcatcatctaccctctttgcaccccgccatcctttcaagtcttcgttgtctatcgttccacactctacagccatgagtacacattatttagctccgac<br>ttagaagtgagcacttgcaatacttgtctttctgtgtctgacttaagataacggcgtccagttccatctaggttgctgcagaagacatgatttcattcat<br>ttgcacaactgaatactattccattgtgtatatatgtcacatttcctttatccagtcatctgttgatagacaccgaggtggattctgtatctttgctact<br>gtgaatcctgctgcaataaatataaaatgcaggtgtctttctgatataacgatttcttttcctttgggtagccgtcttgtttcttt<font color="green"><u>AAAAGAGCTGACGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCTCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGAGCTGACGA</u></font>aatgcactttctagtgctgtccgattgcccattacatacgttcttacacttgatacccagcagtcggcaaaccatagcccgcctgca<br>ggccagatcccgcctgtcatctgtttttgtaaataacatttattggggctgggcatggtagctcatgcctgtaatcccagccctttgggaggccaagacg<br>gatggatcacttgaggccaggagtttgagactagcctagccaacatggtgaaacctcatctctattaaaaatacaaaaattagctgggcatggtggcagg<br>cacctgtaatcccagctattgaggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagatggcgccattgcactcca	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:TIAM1:NM:003253:2/29	
0	chr21	44385911	44385912	1001474	0	+	pAlu21-43280486; RIP_Alu_chr21_043_01	NA	NA	SINE	Alu	Yb7	nnnnnnnnnnnnnnnnngtttcaactgttcattgacctcattgagaaattacatatttgggctgggcgcagtggctcatgcctgtaatccctacattttg<br>ggaggccaaggtaggaggatcccctgaacccaggagttcaagaccaacctgggcaacatgatgaaatcgtgtctctacaaaaaaatacaaaaattagctg<br>ggcatggtggcacacatctgcagtcccagctactcttgaggctaaggtgggagggtcacctgaatgcagggaggatgaggctgcagtgagcagagatcct<br>gccactgcactgcagtctgggcaacaaagtgagaccctgtctcaaaaaagaaaaaaaaatctaatttcaattaaaataaaattaaa<font color="green"><u>AAGAAGGCCAGTTT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTTGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGGCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGGCCAGTTT</u></font>cgatggctcatgcctgtaatcccagcactttgggaagctgaggcaggtggattatttgaggtcaggagttcaagaccag<br>cctggtcaacatggtgaaaccccatctctacaaaaaatgcaaaaattagcccattggtagtggcatatgcctgtaatcccaggtactcgggaggctgagg<br>caggagaatcatttgagcctgggaggcagaggttgcagtgagctgagatnnnnnnnnnnnnnnnnnnnngtttcaactgttcattgacctcattgagaaa<br>ttacatatttgggctgggcgcagtggctcatgcctgtaatccctacattttgggaggccaaggtaggaggatcccctgaacccaggagttcaagaccaac<br>ctgggca	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	202631461	202631462	1001475	0	+	pAlu2-202595483;1104685654788; RIP_Alu_chr2_202_02	NA;NA	NA;NA	SINE	Alu	Ya5	cagaaatagttcattaagaacccctaggctgggcgtggtggctcatccctgtaatcccagaactttgggaggtcgaggcgggtggatcacctgaggtcag<br>gagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaataccaaaaaaattagctgggcatggtggtgagcacctgtaatcccagct<br>actcgggaggctgaggcaggaaaattgcttgaacctgggaggcagaggttgtggtgagctgagattgcaccattgcattccagcctgggcgacaagagca<br>aaactcagtttcaaaaaaaataaaataaaaaaaagcaaagacttggaaccaacctacatgtccaacaaggatagactggattaagaa<font color="green"><u>AATGTGGCACATA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AATGTGGCACATA</u></font>tacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaactggaaaccat<br>cgttctcagcaaactatcgcaaggagaaaaaaacaaacaccgcatgttctcactcataggtgggaattgaaaaatgagaacacatggacacagtaagggg<br>aacatcacacactggggcctgttgtggggtggagggagcggggagggatagcattaggagatatacctaatgctaaatgatgagttaatgggtgcagcat<br>accaacatggcacatgtatacataagtaacaaacctacacgttgtgcacatgtaccctaaaacttaaagcataataataataaaatttaaaaaaaaaaga<br>aagaaaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ALS2:NM:020919:3/34	
0	chr2	65100047	65100048	1001476	0	-	pAlu2-65057746;1104685777294; RIP_Alu_chr2_065_02	NA;NA	NA;NA	SINE	Alu	Yb7	gcttttagtttgtttatgtgggttgtacctctcaatagttaccagtttgtagattaaaactgaaccggcctggccaacatggggaaaccccatctctact<br>aaaaattttaaaaattagccgccctgtggtcccagctactactcgggaggccgaggcaggaaaatggcttgaatctgggaggcagaggttgcacagagcc<br>aaaatcgcgccactgcactccagcctgggtgacagagcgagactctctgtctctcaaaacaaaactggccaggcgcggtggctcaagcctgtaatcccag<br>cactttgggaggccgaggcgggcagatcaggagtttgagaccaacctggccaatatggtgaaaacccgtctctactaaaaatataaa<font color="green"><u>AATTAGCCAGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATTAGCCAGGTG</u></font>tagtgtcgcatgcctgtagtcccagctacttgcgtggctgaggcagaagaatcacttgaacttgggaggcggaggttgcagt<br>gagccgggatcgggccactgcactccagcctgggcaacagagcaagactccgtctcaaaaataaataaataaaataaaataaaataaactgaagcagtca<br>cggtggcccatgcctacaatctcagctacttgggaggctgagacaggaggatgcttgagcccgggagttcgaggtcagcctgggtaacacagcacagacc<br>cctgtctcaaaaaaaaaaaaaaaagaaacgtttaaaaagtgtaaaataaaatagaaaccgacggccgggtgtggtggttcatgcctatcatcccagcact<br>ttggg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	39315340	39315341	1001477	0	-	pAlu2-39273037;1104685771010; RIP_Alu_chr2_039_02	NA;NA	NA;NA	SINE	Alu	Ya4b	gacaaatactatatgatttcacttctgagatacctagaatagttcaattcatagagacagaaagtagaatggtaggttccagagcctgcagggaggagga<br>attggggagttattgtttaacaggtgcagagttccaggccgagatgatgaaaaagttctggagatggataatggtgatggttgcacaacaatgtcactga<br>attatgcatgtagaaatggttaaatggtaaattttgtgttgtgtgtattttaccacagttgaaaaaaaaagtcacttccttcgctccatctcaggcatac<br>taaagtagaatttctagtggtcgggcccagaatcctgcgtttaaaaaaaaagaaaaaagcttttcagtttattgttatgcatggttt<font color="green"><u>AAGAACCACTGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAACCACTGAT</u></font>atgtgggattatctaatggaaagtggggtaaactggattttgttggtattatctttaaagagaaatttatccgattgatgaat<br>taaagtataatcttcatctagatttttatgtttaattcagctgttaatatttacacattacttcatgtggtaatgtgaataatgactactaataattatt<br>tagcattctaccacattttaaagcactttcggctgggtgcagtggcctgtgatcccagcactttgggaagccgaggcaggaggattacttgagcccagga<br>gttcaagaccagcctgggcaatgtggctaagccccatctctaaaaaaattttaaaaattagctgggcatggtggtacacacctgtagtcccagttacgct<br>agag	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:SOS1:NM:005633:1/23	
0	chr2	31952211	31952212	1001478	0	+	pAlu2-31909920;1104685768855; RIP_Alu_chr2_031_01	NA;NA	NA;NA	SINE	Alu	Ya5	aatatcttgcatttattcactgatgtttgagatttatttctctgctaatcatttgcttctgttaaaaacacccgactaagaaaacacccatgaaagatct<br>gcaatccttgacagttcaatgagaacaaatatgtgtttagtctgtctttctgatcaacattttgaaaagtttttcatgtgggaaaagagaaaagagtggt<br>aagacaaagggtatatgagggcatgacaccaaatatatataattagaaagatggagaaggcacaagaaagagacactagggcaaaagactaattttccct<br>gttttaaaggtggaagatgatacaaaaagacttatggtatgattccacttatatgaggtacttatagtagtcaaaaccatagagacaaa<font color="green"><u>AAGTAGAATGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGTAGAATGG</u></font>tgattgccaggggttaaggggagaatggaatggggagttagtgtttaatggaaatgctttcagttttgcaagatgaaag<br>agttctggtgatagatggtggtgatgactgcataacaatatggatgtatttaccaccatacgtatacaagctttaaaatggtgtagtcaattatatgttc<br>tcagaaccacaattaaaacatctctgtggcccctaatatgatgaaattggtcaccacattaaccaatattttcaactttgcaaagcacaccaagagacat<br>ttttctggtaatctattaaagcttaacactgattttcaatgaacaccattaaaatccagagctcatcagggtttcaatgattttctagtacaacatgtag<br>taagcattta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	21796828	21796829	1001479	0	+	pAlu2-21754538;1104685452461; RIP_Alu_chr2_021_02	NA;NA	NA;NA	SINE	Alu	Yd8	actgcattataaacctgaattgaatgagaagtgactaaatgggaagaaatttacctgaaagcaacttgatatcagttttctgctactgagaagaatggaa<br>gcttaatgatagaaattatatttgactatagaaaaataagttacatttttgcatgtatcagtttgtggttacatttgaatccattatatagtcccagcaa<br>tttttcttttatggtttcaatttctgatgattttcttttttaatctactagcacttatttgtatgttctacctttgtttctggaaccattcgtcattcaa<br>ctatttcatcaatagtttttaaaacaatgtgggaaacagtgcaggaaagtcaagaggcagagaagcacttactcactgtagtt<font color="green"><u>AAAAGAATAGCATTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAGAATAGCATTCCT</u></font>ttc<br>cttagtcctttctttctgtctttgcttgctgaaatatcctcccctttcaacctaatcaaattgtattgagtaagacttcatttagattttaccacttcaa<br>ttccaatttcctggctactcaagcccacgatgtgatcccttcctctaaactcttaaagtatgtgcagtctctaccttcaagttaagaactgaattataat<br>agcccatctttgttgtctgctgttttcttcaaaataatttcttttctaattttgtcagttagactctccaattcaagtgagctccctaagatcttctttg<br>aacacaaggtcttacatttagattcaaagtaacattttgatttagaattaaagttgagtgggtttacataacctgggtgg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	652673	652674	1001480	0	+	pAlu2-642672;1104685353303; RIP_Alu_chr2_000_01	NA;NA	NA;NA	SINE	Alu	Ya5	ctgggccatacctgggcctgtggggccacctatgagtgcttcccttcacttcacccagaccgcagtgcaggaattgccaagaatccgtgagcggccgtgg<br>tatccgtcagagcatgggctgctcctgtcctcaggagtctcttggcagatccagggcctttgcactcagggtcactttcaggtcacactgggctgggctt<br>gactctgcagaccaatctggaaaccccttatgtgtgacatcagcttttcttacctgtcaatatggcatatgtttccattaagccatctttacatctttta<br>aaaaaattttgtaattttattcataaaaatcttgtacatattttagattagtttcttggaaacttacaattttggttgatattgtaaaag<font color="green"><u>ACATCTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAGC</font><font color="green"><u>ACATCTTTTA</u></font>taaaatgcatttctagctgtctattttgttataaaaacaaattgatgtacattgatctttatatcgagtgatc<br>tcccccaactctcttgttagtatttatcatctatctatatcttattttggggtttctctgtagaaaatatcatctacgattaagaacacatttttttctt<br>ctttctttcaaattcttacaacttttgtttgttttgtttatcttactctaggatagtgtttttattttcataagatttcttcttttcttctgagaatgtc<br>cttattcaacctttattctcaagagttgaattgatggacatggtttctgagcagctggaggcttcctgtctctgttgctggtgagaatttgcctttcacc<br>tagtcgctgttcctttg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	84728756	84728757	1001481	0	+	pAlu2-84686466;1104685781634; RIP_Alu_chr2_084_02	NA;NA	NA;NA	SINE	Alu	Yg6	gaagggatgttgaattttatcaaatgctttttcagcatcaattgaaatgatcatatggttgtgtcctttcttctgttgatatggtgtatcacattgattc<br>atttgcatatgttgggtcatccgtacatcccaaggataagtcccacttggttgtaatgaatgatctttctaatgtattgttgaatttagtttgctagtat<br>tttactgaggatttcttacatcaaaatttatcagcaatattagcctgtagttttctttttttaaaatgggtctttctctggttttggtatcagtgtaata<br>ctggccttgcagaatgggtttggaagtattccgtcctttcctagtttttggaatagtttgagtaggattgggattagttcttctttaa<font color="green"><u>AAGTTTGGTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGTTTGGTAAAG</u></font>gttcagcagtgaagccttcaggtcctgggtttttctttactgggagacttcttattatgactttgatctcattacttgttattg<br>gtctgttcaggttttggatttctttctggttcaatcttggtaggttgtaagtgtctagaaatttgttcatttttctacattttccaatttattggcatgt<br>aattggtcatagcagccactaatgatcctttgaatttctgcagtatcagttgtaatgtcacctttttttatttctgatcttacttattgggatcttctct<br>cttttttcttcattactctggctaaaatttgtcacttttgtttaacttttcaaaaaaccaactttttgtttcattggtcttttctattgtcttcttcgtt<br>acaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	65333803	65333804	1001482	0	+	pAlu2-65291512;1104685777384; RIP_Alu_chr2_065_03	NA;NA	NA;NA	SINE	Alu	Yd2	cgtttttgtagaagatatacatgattttgtattttgtcctttttgatttactttcaaaaatatgctaaagtgaaaaccacgtcacaatttagattaaaat<br>tatttacatgtaaacaagacataaaacttattttttttgttttaattgcactgccaaagaagagaggatataaaacttctataagcgattatctttgtga<br>atattcaactattacgtaggtttacataatgatatgcattacttaaaacattgtttgggttttagcaaattaccatattatacttattgttatacttatt<br>gtctttaattatatatgaggaaaataattttttaaaaatcccaagtgccagtcagcagcaaaatagaagtcagagaaggaaacaaa<font color="green"><u>AATCTTCTAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGTC<br>TCTACTAAAAATACGAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATCTT<br>CTAAACAAG</u></font>gtaaatcagaagaggggactgaagcatagaatgaactagacatcctttccagtttgagattttaaaatttttaaaaagatcgctattgtag<br>aatattatccttaataaatgattgatacctaataccaacaatttgtacttggcagttcagctggctgactttactactattgataaggttccttcttaat<br>taaaccaaatattcttctttctttttttgagacagagtcttgctctgttgctcaagctaatttttgtacttttagtagagacgggatttagccatgttgg<br>tcgggctggtctccaactcctgatctcaagtgatccacccgccttggcctcccaaagtgctgggactacaggtgtgagccaccatgcctggcccc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RAB1A:NM:015543:1/4	
0	chr2	63779236	63779237	1001483	0	-	pAlu2-63736931;1104685776976; RIP_Alu_chr2_063_01	NA;NA	NA;NA	SINE	Alu	Yb7	acagtgtctagctattttttaagttgaattacttctttattactttttaaaatgcagatatcttttaaacacttgttacttagtatgagaataaatcttt<br>aaaaattggcattttattactgctttctggaatctttaaaattaaataatttttatgcattagagtaggtgtatatatatctctgggaataactggaata<br>aacaacataaaagagaaagaatagagaaaatttattttttataagtcttcattctgctcagtttaacagtgcccaaatacagagtaaatattgatactag<br>tgaaataacttttcacaactttttttgggtactataatagaatacttggattttaaatagaatatagaatataaaatattgtttta<font color="green"><u>AAGAAAGCAGGGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGCAGGGCC</u></font>aagtgtggtggctcacacctgaaaatccagaaccttaggaagctgaggtaggaagatcacttgagccc<br>aggagttgagaccagcctgggcaacatagtgagaccctctctcttaaaaaaaaaaaaaaagaaaatgaaagcaaaacagaatattcatatttaggtttat<br>actaggataagaagatttaagaaggaaagactgtgatggggataggttagaaaaggacaatgacaaatctggcacattataaaaaaatcacccttttcaa<br>atgggtgccttttatgtaacaaataattcacatacgtgtctttggttttagaaaacaaaagcattatgccagcattttgcttttaacatattttgagtct<br>tatttgccttaatattat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:C2orf86:NM:015910:1/18	
0	chr2	11426376	11426377	1001484	0	-	pAlu2-11431276;1104685092216; RIP_Alu_chr2_011_01	NA;NA	NA;NA	SINE	Alu	Ya5	aaaattgtgaaaaaaatcagaggtctacagatgaaggcagaagactatgatgttgtaaaagttattggaagaggtgcttttggtgaagtgcagttggtaa<br>gaaagtgttttgttcttattgttctctatgacatcatggttttgtgaagcattatcaatagcagctgagtagatctaatttctatgcccacccatgccag<br>aaggtggctttgtgatcttggtcagtgtcctcatctataaaaggaagcctttgttgtctactctgggtctcttccagctctgaaacacattgtagaaaat<br>aaggccaatatagcttcacatgtgatctgcctagcagttactattccaccagaactgttgtatttttatttagaatgttcagatt<font color="green"><u>AAAAACATCTGCTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAACATCTGCTTA</u></font>aggaactgagatttatttagatgtataagaaacctaacagataaattttaataactgaaattaaatctgaa<br>atttattttcgcaggccatactggtaccaattggaattataagaaatgttgacaataactattacctttatattattggctttggaactcttcctaatct<br>cgtattcctgttttcatcacctgagtatatgaaactcctctattattgtccttatagttaaattagagtcaaattctcttcttcacactacagcgtttac<br>ccctcttgatggagcactaagaaaagtagtgatcattataagccagcatggattttgttaagaacaagtcatgatagacttttttttcctttcattgctt<br>ctttctttgggttt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:ROCK2:NM:004850:3/33	
0	chr2	182262201	182262202	1001485	0	+	pAlu2-182226223;1104685649812; RIP_Alu_chr2_182_03	NA;NA	NA;NA	SINE	Alu	Yc1	tacattgagcgtataacttgatataaacaacaacaaatattattttgtctgacaaagtctaggttctcaggctgaaacagggagcaaggcacacagatga<br>ctcttttcatggggagtacattatggcggggaagacctagaagcaataaataaacaaacaattaagaaaaaaatattccagaaagacatgatatggaaat<br>aagagttggctgggcaactactttcctggaagatcttttacaagtctactctctgaggaagctagaagagcataattctcatcaagaggtagcaaatccc<br>tatcatgcctccttttgcctgctggaactttagagggagaaagaggaacaggcatgactgaagacaataagtaaaagagccaac<font color="green"><u>AAGAAGGAATACAGAG<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAG<br>GAATACAGAG</u></font>ccaaacgtggccagatgaacatgtgcccacgggaatatgtgggcatactgagtggccagcgccaccacagaggctctaagcctatcaagc<br>taaagtcacgtacctcaagccctcttctttacagatggcatctaaagaatgacaagactcacccaattcatatttagagattttgaaccagagctggaag<br>ttagacttcctggtgtatttcatttacatatctaccaagaattgccttcatctgagttacttgcaatgtgggcactaataaatatgattactgagcaaga<br>atcaaggaatgataccatggggtttacagtacccacaaaattagatatccactaaatgtactatgtggcagataatagatcagtgtgtcagtac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr2	178318730	178318731	1001486	0	-	pAlu2-178282738;1104685648842; RIP_Alu_chr2_178_01	NA;NA	NA;NA	SINE	Alu	Yb7	ctggagatgaaaaatataatgtctgagattaaaaatatatttaatgggattaagagcagaaaagacatagcaaaataaaacagtagtgaacttcaagaca<br>tagcaacaggaactaaaagaaaaaaatgagaagagtagcagtgagctgtggaacttcaaagagcctaataagtgagtaaatagagtccctaaaggtcagc<br>ggggaggggggtttattggatagttgaagaaataatggacaaagtttttcaaaatttgatgaaaactataaagccacaaatcaaaaaagcttaacgaatc<br>ctcaacaaaagaaacacagagaaaaactacaccaaggtccatgacaatcaaattgctcaaaccagtgataacaagaaaatcttaa<font color="green"><u>AAGTAGCCAGAGGGG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTAGCCAGAGGGG</u></font>gctgggcacagtggctcacgcctataatcccagcactttgggaggccgaggtgggcggat<br>cacctgagatcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggctcaagcttgta<br>atcccagctacttgggaggctgaggtaggagaatcacttgaacccgggaggcagaggttgtggtgaaccactgcactccagcctgctgagcgacagagta<br>agactctgtctccaaaaaaaaaaaaaaaaaaaaaaattactactgattttcttagacatgataatggtattatagttatgaagaagaacactattcttct<br>gtctttaggagatggtgctgatgta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:AGPS:NM:003659:8/20	
0	chr2	178351467	178351468	1001487	0	-	pAlu2-178315479;1104685648848; RIP_Alu_chr2_178_02	NA;NA	NA;NA	SINE	Alu	Yb7	gacatcgttatttccaaactaacaattttatttatctcttttagagaataataacacgttatatctaacactgatatgctgattaaaaaacattattttc<br>ctcctcttcataggctacagcaggaaatgtattttctgagaacgtcttaaaaatcatttacccatctactgaataaaggaggagattatactggactgcc<br>acttatgagaaagaatcacattaatcttccactaaatcctcctttctagtttctcacaaggcagtgaagtattgaaagaggatacttcctcacatggaca<br>aagatcggatgagagactttagtagaatccttctaatgctagtataaggttgcttaatttatttccttcagtaagaatagtaataaaa<font color="green"><u>ATATACATATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGAGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAATATATAT</font><font color="green"><u>ATATACATATAG</u></font>cccactttgctatttgtgaacagtcatgtatgttctttcccaaaagatatttatcca<br>aaattacagtttcccatttcaaaagcaacttgaatctgaaaatattgcaaagatggaagtgctataaaatgacagtgaagaattacaagcaaccaattca<br>ttattcaatcaagaatttggcacaatcataagccatgtaccatctactttaatggatcttaattcccctgctatcaactgaaattccaaatcccaaattg<br>aacaatgactagttccaaaacctgattttttcaatttttctgcctgaaaacactattacaaaggaaggcagcaaatactgtaccactcttgacatatgag<br>acttgtatgttctacaaactaatatacaact	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:AGPS:NM:003659:11/20	
0	chr2	154752616	154752617	1001488	0	-	pAlu2-154716616; RIP_Alu_chr2_154_01	NA	NA	SINE	Alu	Ya5	tatgtatatacaatttacatcttcatatatatttaatatttatatattcagattaaatgaaagatatatttattcataatttacatattgatatatacct<br>attaaatatataaaatacaggagaatgagaacaaatgtaaaaccaactttagagttttaaaataaatcacacaaacaacattatattatagtcagaaaat<br>taagcaatgtaaagttaaataataaaatggtaatcaaaaaataagtgaaagtagtcaggacttaaagaaaaaagacaaaaggttatcagtctttaaagat<br>tagcaatataagtggtttttccttatacaattagttttctaaatcgaaagtggcaagttttttttaatttaggaaaaaacat<font color="green"><u>AAAAATATAAAATCATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>TAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATATA</u></font>atatataaaatcatccttaattccagaaacaactatcctgttcttactcgcagactattatttaaataattatatcatacaaactatttta<br>tgattatattctctttttacttaattgtgaatttcttgtgtgacaatatctttttttatcattacactgcaagatcactgattaatatcctgttgctatg<br>gcatgccatcatttacttattttctgaatataaattatcatcaaatatttgtggcaaaaagaagttactgtgaaggtccttgtgcatatatcttctgcca<br>cagcgtgattgtttccttaggataaaatgcccagaactgggatttctgggtcaagtagcatgagactgttaaaacttgttaaaccatattt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GALNT13:NM:052917:1/13	
0	chr3	4205146	4205147	1001489	0	+	pAlu3-4197006; RIP_Alu_chr3_004_01	NA	NA	SINE	Alu	Ya5	atcaaaaatgtacaaatgtctgatgtaaagtcattgggtgttgaactaagcagcagcctgaaaaaaaaaatcactgtctactgctacacctaggaaatgt<br>agcctccactcttctcccggtagactgctagggtttccgggtcactgcactttgcctattgaagagaagagaaacaaaaacactccaacaaccaattatc<br>tctccttgtttttattgtaccaaagcagacttaatctccttgcccctttttaaccttccttttcatgcagatgagagagagagagagacagagagagaga<br>gaaaggaaggaaggaaggaagggagggagggagggagggagggagggagggagggaggatgggaatttataaagactttataaagatgt<font color="green"><u>AAGAAAATCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAAATCTC</u></font>tccaatgtatctctcaaagacctattacaggatctttcttctatctctttgttgatattctggttttcttgtactgacatcca<br>ggatactgtccttggacccactttctcagacatttctgtaaaggaacagtcttccagctcctttgtatgagaggaaattgaagcctatgaaaggtaagtg<br>ccatgctcaaggtctagagtgagtggggcagagttaaaacaacatctgggtttcctaactgccactccctgttctttcaattttaccagtccacatcata<br>aagggagatcaagatgtattgttaggtttgaacctgtttcttaatttccaacatcagtcttctaatagacagccatcatcttatatttttctatgaatta<br>ccttgg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	31881399	31881400	1001490	0	+	pAlu3-31728001;1104685213628; RIP_Alu_chr3_031_02	NA;NA	NA;NA	SINE	Alu	Yb7	gatagaaaaaaagaaaaaaaacttgaggaggctttccaattttaggtaggtggccagagaacgcttcatgagaaggtaacatttgattaaagatgtcaac<br>gaagtaaaggagtgagccaggctatctgggtaagagcattctacatagaatctcaacagagcacaaaggccctggggtgagagttcacttggtgtgtttg<br>agcaagatggacagtgtggcagaggtggaagtgagcaaagcatagagcaatatggagttgaggtcaacaggttagggatgggagagactagttcctgaat<br>tagaaattacagacaacagccaggcaagccagatgcctggtaccacctaaggctcatgcagacacagagaatgacaagcaaatt<font color="green"><u>AGAAGAATGGGTTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAGAATGGGTTTCA</u></font>ataagctttctcctcagggtcatagtcaggtattaaattgttatttgcatacaatttacttaggtctacatg<br>gaatggatcatttcaactggataattttcatcataaaattatattactactgccctgaagatgggcttttcatgatttattctatgctctatttcttctc<br>acgtctcattgtaatcgacccagaagatactttatgccagtaatgaatcatagaacaaaaggcgagtgcgtgctgaggaattctataaatgatcactctg<br>gaacatggggacaagggctcctattttatatttaaacatctgtctcctaccagtgggtcaaaccagccatgggatgggaagtccaatgtcattctgagaa<br>catttcaagaag	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:OSBPL10:NM:017784:4/13	
0	chr3	48372327	48372328	1001491	0	+	pAlu3-48191559;1104685209522; RIP_Alu_chr3_048_01	NA;NA	NA;NA	SINE	Alu	Yb7	tgaacccaagaggcagaggttgcagtaagccgagatcgcgccactgcactctagcttgggagacagagcaaaactgtctttttgtttttcagttgcaaga<br>tttaatagagtggaaacagagctcccatatgatgggaagagacccaaagggggttgccactccctgcttgaatgcctgggtttatatcccgatcattgtc<br>cctcccctgtgttctcaggcgatatatgatttgactatttctttacctcctgcttttagcctattttgtattttagtgagccctctttactacctgattg<br>gtcgggcttgagctgagttacaagcccctgtttaaacgtgggtgcgttcaccttccctagctaggcttacaaattcttagtcagcct<font color="green"><u>AAGAAATCCAGCT<br></u></font><font color="red">CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAATAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAGAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATCCAGCT</u></font>agtcctgtctctcagtccccgctctcaacaggaaaacccaagtgctgttggggggattggctgacaactgctc<br>taactgcttcctgctcaactggggcatagtaggggtcgtgcagttgagatttcctagggaggggtgccttcgatgtcatcaatatcacagcatgggctag<br>caggccggtccaaggatccctggtagatcttagtcagggactgcatctggggctccatttgaagaacatttgtagttttacagctttgattctggaagag<br>acaaacttaacaaggaggttaaagatacagggattgaaatgtatggtctgaagttcaggggcatatgggtgtggggctgaaagtggggtttcctttagaa<br>aaactcctataaga	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	19035453	19035454	1001492	0	+	pAlu3-18886026;1104685216610; RIP_Alu_chr3_019_01	NA;NA	NA;NA	SINE	Alu	Yb7	tattatctcatttaattaacaccacaactgtatgaagtaggtacttttatgcttgagaagactgaggtccgtagaaattaaggtatttgtcttgatgtca<br>ccagaccagcatatgaaggggtcaagatataatctaggcagtctaactccagatttctccctatgaactcttgttaaggtggcatcaagaagcaacacac<br>tgttgaatttactctactaatccacaataaatcaacttctgtcagtctctaatatgaaatcaaatgataaatgaatatgtgtcacattggaagtaaagat<br>tatccagtgatcaatccaactcttaccattgacaagagggaggcccaaagcagatgagttcaaatgtgttagtgcttagtaagcttaaaaccaag<font color="green"><u>GTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCNNNNNNNNNNNNNNNNN<br>NNNN</font><font color="green"><u>GTCAT</u></font>tgtaatatatgcaaatgtagtgagtatcccaaactgcacatcacatagcaaacactcaaaaaatgatgtgtgtgcatcttccagggaaatt<br>tgatacagcgaccaaaaaggaagatttggaagagatgttggggcctgatcatttggtgatgaaaagcaaatgaaaaatactgcctggaggccaggttcag<br>tggcttatgcctgtaattccagcactttggaaggccaaagtgggtggatcacctgagcttaggagttcaagactagcctgggcaacatggtgaaaccccg<br>tctctactaaaaatgcaaaaaattagccaggtgtgatggagtgcacctgtggtcccagctacttgagaggctaagatgggaggattgcttgagcctggaa<br>ggtg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	87520482	87520483	1001493	0	+	pAlu3-87400471;1104685028053; RIP_Alu_chr3_087_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	caaaataacttggaagaataaaatgtggcataaaatcttaacatagctgagagttttaagttattctgtagaggagggtgaggaaaaaaaacagttttgg<br>aaaattaccataaaacattgaaagtaaaataaggaatgtttttgatatagcttcaaggaataatcacatgtttttacttacagtaagatttcataaattc<br>ttatttcattacaatactgtattttattaaaaaaactgaacaccacacaaatatctgtaacttaaaaaatattcgttgttacccgagctttagtactata<br>atatttagcaaaaaaaaaaaaatgactatagctgatgactttatgtcattagctacccctgaagttgctgaaaaaatgaagtgtt<font color="green"><u>AAGAGATAAAGTTGG<br></u></font><font color="red">TTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCT<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATAAAGTTGG</u></font>aatttggtagaagactcca<br>ggaataaaggtattttttttgtggcggggaggggatatctgtcagatctctatagtgcagagaattttacagaggtgacctgacactcttttccatcaaa<br>gcaatgagtggcaaactctctcagctggatatctggactttgtgagtctttatcttcaccaatataaaatctatcatgtagtcaaattatgatattattt<br>taatattttagtgccagaagactgatgcatatttacaaactaagtcagctggctgaattacacaacagaattttataattttaaaagaaagaaaggaaaa<br>ggcactataggcaataaaacactatgaagttgtggtcaaaataattaagtcacttgtactgtgttc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	76985884	76985885	1001494	0	+	pAlu3-76791503; RIP_Alu_chr3_077_01	NA	NA	SINE	Alu	Yc1	ttagaaaaacaatgcatgcatcttaaaataaagaaaagccaataaaannnnnnnnnnnnnnnnnnnnatgttaattccaagtgaaattgaaaataatttt<br>aaatgtgtaaagattttgtatgcagcaacttcaaggcagtaaatgaaaatgtaagggtggacagcgttgctcctccaagtcacggaaggtgtgacctgaa<br>ggatttatgaggtattaaaagcaaggactgataaattaattatttgtgggagccaacacattacaattaccactaacatgttaaccttagtagggtttct<br>ttataaatacacatgtctactatatataaatgtttccagatatgtaattgggatcattcttataacactgattgagaaactggttct<font color="green"><u>AAGAATTCATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCTGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGAAAAGA<br>AAAAAAA</font><font color="green"><u>AAGAATTCATTTT</u></font>attcacaacagcagtggatatttttagactacagagtaattgcattttgagtctttaactcaattttactttattacatt<br>ctgcctttaaccttagttcctttttttaattgaaacacctagttaaatatatacattcttatgaagacatttgtttctgaactggttgttggaaacatta<br>ttcctagaaaattacttaggatgtcacagagtattaaaatgaagactagcgtctaaattaactagcacattttatgtagtgttcattgattctacaaact<br>ggtactcattattgacctacctacccctccttatcctcaacctactcacattaattgagtctccattttcttgcttgtacttagtaaacaccacaagtga<br>aggtggg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	169474322	169474323	1001495	0	+	pAlu3-170876349;1104685600305; RIP_Alu_chr3_170_01	NA;NA	NA;NA	SINE	Alu	Yb7	ccaaataatgacctaaattttaattttgtaactgaaaaacattagaaagcactattaattacagatatctacttagcatttgcctctgtgctggtgaaat<br>catagttacaattagctggtctgttctctgccccaacagcactccatcatgcattcaacaaacaattattgagcacctgttatgtactaggcacctggga<br>tctgtcaatgaactcaatgacttgggttctgcccctatccttataacccagtgaagaacacagataagcaaataatttattgcaaattaggaaaacatgt<br>tataaaggtaatcaacagaagatcataagaggaggggtaacctgcttcaaaagggggtcagagaggattctgaggaggtgatatctaagtt<font color="green"><u>AAGACTTGA<br></u></font><font color="red">GGCCGGGCGCGTTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAGAA<br>AAAAAA</font><font color="green"><u>AAGACTTGAG</u></font>ggaggagagaaggggccaggaactacaagtgcaatttaagcagagaacccaggatgagagtttggtacaaaggaggctggtgtg<br>gctgaagcacagtgcaagaaaagaagagggtgtattagtttgttttcacactgctggtaaagacatacccgagactgggaagaaaaagggattttattgg<br>acttacagttccacctggctgtggatgactcagaatcatggtgggaggcaaaagtcacttcttacatggcggcagcaagagaaaatgagagaagaagcaa<br>aagtggaaacccctgataaacccatcagatctcgtgagacttattcactatcacgagaatagcatgggaaagactggcccacatgattcaattacctccc<br>cctgggt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	141318609	141318610	1001496	0	-	pAlu3-142600205;1104685606879; RIP_Alu_chr3_142_01	NA;NA	NA;NA	SINE	Alu	Yb7	tgtttttagtcttttcacactgcagctttgggaaaacttcattccctgatttgtgtttgtcttggccttcctggtgtgcagttactgctgtagaaaaata<br>ttaatagcttcatttcatataaacgtaagtaacttccacacacttatgtagaggactaaaaatgtatctggtatttaagtaatctgaaacagttctgcaa<br>gtgactgtgttttgtattactgtgaagatataaaaatgtagttaattacaatttaaagagtgttctacataacttaatttctacattccctcccttactc<br>ttcgagggtttcctttcaataagcaatttttccatgctcttaatgtattcctttttagtaggaatccagaagtattagactgaat<font color="green"><u>GAAAACGCACTTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAACGCACTTGCC</u></font>atctctggctatggttcacaaattgaaatgcctcctttatcacataaggaggtcat<br>gtatatctgtggcaacagggagtttccttattcactctttatttgctgctgtttaagttgacaacctcccttcccaataaaaattcacttatacctcctg<br>tctttgtagttctggtattcactttactatgtaatagaagtagcatgttgctgccagaatacaacattgcttttggcaaattaaagtgcatgtcattttt<br>taatacactagaaaggggaaacaaattaaagtacacaagtctaaatttaaaacttttgtacttttctatgcagatctgtgcacgtgagagggtgtcctgt<br>ttgtctagtgattgttagagttggaacac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RASA2:NM:006506:19/24	
0	chr3	124406523	124406524	1001497	0	-	pAlu3-125688109; RIP_Alu_chr3_125_01	NA	NA	SINE	Alu	Ya5	ggattacaggtatgagccaccacacacagcctcctctgctcatttctaaatgagcataagacaagctgtaattttaaaaaatgtaaatgcaacataatcc<br>caagcagcgatagacttgtctctttcaactagttccttactcccaagtattttcgttatcatttagttctaagtgtttttcttcaactatgatttttttc<br>ttttacccagttgtaatgagtatgtttttacatttccaaagatgtgagatttttaaaaaggatatttttgttgatgatttctaacttaattgcattgtgc<br>ttggaggacttggtctgtatgatactgattccttgttttttgttgaggtttgctttgtaagtagcacacatggtcaatttttgt<font color="green"><u>AAAAAAATTCCATATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAAATTCCATATGG</u></font>gttttccaaaaaatgtataatcattaatttgggggtacaggtctctatatgtgtccatgtgtcaagtacattgattgttt<br>tatggatatttctagtccaaatatccccctttacccctcaatattttggttagagaacatttagtgtgctgtcaaaaataaaaaggatgaaaatatggct<br>tttaacagaataatgaaagcatctatcacccatctcacaagatagttggttgcaaaggaccaaaatgggggtgcgttgctgtgtatgcactggtctccag<br>ctgctcctggcagcctaggagtcagttaggaagggactggaggtggggggccgaggaggatgcagtggtggagttacagcttcttctttataaatcacat<br>ttcc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KALRN:NM:007064:18/27	
0	chr3	120425475	120425476	1001498	0	-	pAlu3-121706690;1104685103313; RIP_Alu_chr3_121_01	NA;NA	NA;NA	SINE	Alu	Yb7	aggtgatatcctaaattctagtgggcatcaaagtttttcctcttttgtctatatcttgctgtaataattaattccctgattttcctttctatctaggatt<br>ttaattgattctcttcagttgtattttattgtatttctgggcctcgttacattttgttatttttctcaatctatcaaaatccgtgcatgtactttctact<br>atccatacttctttactatttaatgtctcacccactctcttatagtggcatatttcttttgctctaataactaaatctcttacaggtaggaagcttacat<br>aactaatcattattcaaagaactagaaaattagacatttgaatagattagtctcagatgatctacaggacactattttgtcagcta<font color="green"><u>AAGAATAGCAATTG<br></u></font><font color="red">GGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGC<br>GCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCA<br>GTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGCAATTG</u></font>tatcaaatcagtactattttagtagatt<br>ttcattacctaatattacttttagtgagtataagtaatatatgtatgtactggtatctatggcagtactgtgtacagtgaagaaacaacataactttttg<br>agtgaataatttcatatgtacttgaagtagttttgattctcttgattaataaagtggttctacaggtaggaacaggcatggagtaggcactcaggaagtg<br>ttgaatgaagtaaagatctgctaaaagtttaatgggatttcgtcagcccttgtaaaataaagagttataaaactgacagagaaaggtttatggctattta<br>taaatatttgtagagaaaattttaaaataattgtctctgagttgttagtcatactaga	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:RABL3:NM:173825:3/8	
0	chr3	110987479	110987480	1001499	0	+	pAlu3-112268707; RIP_Alu_chr3_112_01	NA	NA	SINE	Alu	Yc1	agtgttttagtaccatccgcttggtattgccctcatgatagtgagtgagttctcatgagatctggttgtttaaaagtgtgtggcacttcccctgtctcgc<br>ttgctcctgctgccaccatgtgaaactcctgcatcccccttcgccttatgccatgattgtaagctttctgaggccacaccaggagcagatgccaccatta<br>tacttcctgtactgcttgtagaaccttgagccgattaaacctcttttcttataaattacccagtctcagatatttctttatagcaatgcaagaatggccc<br>aataaaatcagcaaatatgatgtaagcagagacttaataagcacttatgtattgaagtgtgtcctcttcaaaggcagctgcctcaatgt<font color="green"><u>AAGAAATGTGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGTGG</u></font>aaaagtcatgtggaagagaaccaatgtgccccagttggcagatctagttatgtaagccatcttggaccatccacc<br>tagtcatgctgccatgagtgatcttaggtaagatgggctgaagaactgatcagtccagccaaaactggagaattatgagccaacaaatttttgttttaag<br>tcactaaatttcagaatagtttgttaagcaccaacaaataactgactcacaggtatgaaaactcattgagaacagggcttatgtcccatatgtttagatt<br>aataacctcctggctatttcagttactctgcagaaatgaaggcagagctacagttacctggcaaagatgggaccacttaacacaaagtcaggcattgtct<br>atgagggagggata	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	110271030	110271031	1001500	0	+	pAlu3-111552258; RIP_Alu_chr3_111_02	NA	NA	SINE	Alu	Ya5	tttaaagcctagttggggatccacaatagacaaaataattaacgaatacaaacaaatgcattaaaaggtacttaataaaatgtccttggaagtaggtggc<br>aatgccttaatagttgtcaggcccaagggccccttccattcttgtcaaggggagtgctagccttctctccttgcatagcacacaaaaaaatgtccttggg<br>aagagataattctcaccaagaaaagagagagtattttctatatttgaggaatatccaatactattaaattctttataactaagtcaaattggaaaacatg<br>tagttattggcaggaagaaatgcttaaggatagagtcatttgatgactcttgaaagaaacagaatggcaaaggaaaaaaaggacctatt<font color="green"><u>AAAATTATTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTATTTA</u></font>aatttccaaaattcaatgacaatacaaatgtttagacaagttacacctgtgcttgattttaggttca<br>tattttatatgtcaaacaggtgtaataatgtcttgttaaatgtagcaaagttaataataaattgcgttcactgtgaacaaataaataggcagtgacttta<br>ataactactataaaaatagcttaggaagtagtgggttggaaaaaaaattataagttaatacagtattagagtaacattaacagaatctttcagagtgtga<br>gaaaatgtgttcacaggtggttatcagtggttaagctaatcaagaaagaaactcagtagaacttttagtccaaggacattcccttatcaagatttttatt<br>taggagctctcacataagtcat	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	100410559	100410560	1001501	0	-	pAlu3-101691772; RIP_Alu_chr3_101_01	NA	NA	SINE	Alu	Yg6	aaagactttcctcctcaatgacattttaccatagccagaaacagccaacatgacaccagcttcacactgtagttaccgttcttagcaacttaatgggata<br>gtcatcaaaattgcagtttcttcatgaaatacagaatagctcatcctgatattgaacaaagatgttatctactgtgaaagatatgcacaagcaagttcct<br>tgcactcagagtactgatgttctagttgaggagatgagaagagtatgcataaaaagttaattttatagggtaaaaagaagagaggacaaaaacatttaca<br>aaacaatatttttatttgataatgagtcatatttattcacttagttgatagttaataaggctagaatgaaagtcatcaccacaa<font color="green"><u>AAGAATAAAGCCCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAATACAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAATAAAGCCCATC</u></font>aataaataaactatgtagattgtatcaatgtcattttgataatgtattaaagtaacataagatatgatcatg<br>ggaacagttgagtaaagtgtacatgggaattctccatactatttgcaacatcttatggatctaaaattgtttcaaaataatttatgtttaaaaagggatg<br>acataagaatggggaagggtggagccaagatggccgaataggaacagctccagtctacagctcccagcctgagtgatgcagaagatgggtgatttctgca<br>tttccaactgaggtaccgggttcatctcactggggagtgccagacagtgggtgcaagacagtgggtacagagcaccatgtgtgagctgaagcagggcgag<br>gcattgcctcac	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPR128:NM:032787:15/16	
0	chr3	166362314	166362315	1001502	0	+	pAlu3-167764341; RIP_Alu_chr3_167_02	NA	NA	SINE	Alu	Ya5	atgttgctaatataaataaattttcaggaagttgaaataaatgaagttattgcaactttattttttgagcaatacttttctgaaatagtatccatgttaa<br>agcaaagtgttgattacaataatcatgttaatatcaataatcaattagtaaatccatgctaatgtggatactaagttgtttgactgtagatgcttttcat<br>tttcatgatccagtggtttagatgttgaattacattcccagcaataattcagtaggagatatatgtcccagccttactgtacctcagactgtttcaactt<br>tttgttagtgaccttggcttgcatagcagtctccatgtggatgttgagcatggtttatttggttggtattcagcattttctactttccttt<font color="green"><u>AAAAAGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATTAAA<br>ATTAAAAAAATAAATAAATAAAAAATAAATAAA</font><font color="green"><u>AAAAAGGGGG</u></font>gagagaggcactacatttcacatgagactctacaatgactatatctttctctctctc<br>ttcacttgtctctgaggcctgagtcacagtcagctcctgttcattggttaaggtcactggaaattgaactgtaggtgaccactctacatgtttcaccaga<br>tttatgtcatagaatgagctactctattagcatcctactttcagaatattcagatgatgattgacgtttccaaatgctctcctccctctcccacatgcat<br>acagaaaaacaaattcagaaatcacatattaagaattaactcagcatttattgttctggtggcaacacatgatacgtgcgaggtcgggtcggggagctag<br>agattcagtaattctatataaccaggcttcctat	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	103453397	103453398	1001503	0	-	pAlu3-104734610;1104685641326; RIP_Alu_chr3_104_01	NA;NA	NA;NA	SINE	Alu	Ya3	ctgccactcactgcattcttttctacttatctgacctttggcatggtttctttcttgttccttagtaaaatttccaatattttctattacttaagaatac<br>atgttgttgggaaaaattttccaagttccaatattatcagttatcaacaagtggacatttttaaatgtcaccatcttatttttaaataaatacattttct<br>ttggaaagacatacaatccatttgtcacaattaagaaattaataaaaattattttttaaaaattactaactaaaaattaaccttaattctagaaactaag<br>ctatcttaagagttcaattatagtaaactaagaaatagttatcctcaatgatgggaattttatacttcccttaatcaaatgttt<font color="green"><u>AAAAAGAATTTTACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACGAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>AGAATTTTACTC</u></font>aaatttcaatcatttgactcctaaattaataagactataaaattctaaagttgaaagagatcttcaaaagaagagactatataaatca<br>ttaattgaaggggttgaaatttgagactcaatgaagaaaaaagatttttcaagactccgaatctagtgaatggccagagctgaaacacaaaaatagttca<br>tcaaacttttcattttaaattttaattagtcatcacaccactctcctctaaggtagtaccaaataatagagtgcaatagtctgttataaacaccaacatc<br>agttgtttcagtcaactggtggattcacttactctttttgtaaattgtattacagcataaaaataaccagtaatgtgcaggattcttaagggaatg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	100177267	100177268	1001504	0	+	pAlu3-101458495;1104685642042; RIP_Alu_chr3_101_02	NA;NA	NA;NA	SINE	Alu	Ya5	tctcccttgacaagggattatgaggtttacaattcaagatgagatttgggtggggacacaggcaaaccatatcattccatccctggcccctcccagatct<br>catctcctcacatttcaaaacacaattatgctttcccagtagtcaaagtcttaattcattccagcattaaacccaaaagtccaagtccaaagtttcatct<br>gagacaaggtgagtcccttctacctatgagctggtaaaatcaaaagcaagttagttatttccaagacacagtgggggtacaggcattgggtaaatgctcc<br>cattccaaatgggagaaattggccaaaacaaaggggctacaggtcccatacaagtccaaaattcagtggggcagtcattaaatct<font color="green"><u>AAAAACCCCAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACCCCAAAACA</u></font>atctcctttgactccatgtcttacattcagggcacactgatgcaaagggtaggctcccatggccttgggcagctccatccctgtggct<br>ttgtagcccctctgcccagccctccatataccagctgctttcatggctagtgttgagtatctgcagcttttccaggtgcacagtgcaagctgtcagtgta<br>tctaccattctggggtctggaggatggtaggccctcttctcacagctccactaggcagtgccccagtagggattctctgtgggggctccaaccccacatt<br>tcccttctgcactgccctagcagagattctccatgagggctctgtccctgcagcacacctctgcctgcacatccaggtgtttccatacatcttctga	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr3	187898599	187898600	1001505	0	+	pAlu3-189300625;1104685595629; RIP_Alu_chr3_189_02	NA;NA	NA;NA	SINE	Alu	Yj	ccctgatggcccaagggcccttcccctttgtttctgtctggggaatgttctgtctcctctttcttgaacctccttatattccctcaagaagacttaaggc<br>aaaaacaaacctgaacttactatgtgtggtatttttgtgttataagtgtaggacctagtcatagtaacacatttcaaaaatatggaaccgtataaagaaa<br>atgagcatcactcataaatcactatttagacacaagcattgtttacgtttctaatattctttctttagtggtgcttttcatgattttatgtgcatttgca<br>ttttactgactaaatattactatacaaacattttcatatcttgccacttcccctaacaatacagcccaagcagcttctcatggcatt<font color="green"><u>AAGAATTGTTTGT<br></u></font><font color="red">GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGTTTGT</u></font>acatgtaattttgaatggctgtatgctgtttcatcttaagaatataccataattctaatttttcatc<br>attataaatagcactgtgacgaacatccttcttaacaaaattctttgtctgcacctatgattattttctaaggtagattattagaatttgaaatgccttg<br>cacaaaggacagtaactttttcacccttagtttcagagagaacatgttgtctctggagaaacacagaaacatgaaaaagcataaagaagaaaataggcct<br>ggcacggtggctcatgcctgtaatctcagcacttttggaggccgaggtgggcggatcacgaggtcagggattcgagaccagcctggccaatatggtgaaa<br>ccccgtctctactaaaaata	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:LPP:NM:001167672:1/10	
0	chr3	155040676	155040677	1001506	0	-	pAlu3-156322276;1104685603528; RIP_Alu_chr3_156_02	NA;NA	NA;NA	SINE	Alu	Yb7	agagggtgttagacaccaaatagtcaccttgtcaaggacagttgtgctggatctaatgcagcaaatcccaccaagtctttagaaggctagatgtcagact<br>tgctgtggacaaatcatcttttcacagatttcaaaaaagagtgccttattagtgtatttaacaaatcagagtaattttaaattgtttttctaattaaaaa<br>taaatgtttactataggaaaataaagtaccttaaaatatgaagaaaatttaattccacctataaccaagctgaatttatattgtgtttaaccgtatggac<br>ctactagacaacaaaactcacaatttcatatgatttaacgtactattttggtatctgtctctttttcctatgcgtatacagtgat<font color="green"><u>AAGAATTTGCTTTTC<br></u></font><font color="red">GGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT<br>GCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGCTTTTC</u></font>atttaatactatagagagattgtgaat<br>taaatatttatgtatgaatatattacttactagtttgtgttattcaaagttctcaaaattgtatttaaaattgcttagtcttttttacctgtaatttttt<br>tagctgctcaacagcaacaaaaaggcaacattaaatcggagtgaccactcttgtgttaagcattaagtataacagaaaattaaaaaattccttgatttca<br>aggcatttataatctcattgggaaaaggagattagtgttgcctgaatgagtaaaagtgaaacacccacaattccagtataaagtggtcttatattcagtt<br>acagattctaagtgctacagaagctcagagaagaaagaaatcaagattatctgaaatt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	132719200	132719201	1001507	0	-	pAlu4-133112388; RIP_Alu_chr4_133_03	NA	NA	SINE	Alu	Ya5	acaggggtaaaaggtcacacacaatactgtagaacaatccaaaatattaatttattcctaaagtttttaaaatattagaataaatacagagcattttgtt<br><font color="green"><u>AAAACAATATGGTAAACCT</u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAG<br>ACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGC<br>TGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTC<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACAATATGGTAAACCT</u></font>aaatgtaaaaaaaaattaaattgagttaggaatttcaaaaagacatttcatgtgccttttca<br>actttcaatttcgtatgaaagttgaaaaaacttgaaatcagtaagtgtgcatgtatatgtaaaacaaaattactgcatataaaaacttttttgaggcatc<br>tagaaaatatttagcagtgtgccataatttagaggcacttaaaaatgctttttagtgatacataaaaaattaattaatgacacagtctatgaaaaacaaa<br>tagagcagcttgaaataattcacatatttttcatgtaaaacttttaggagaagtccagtgatgtcacgatagctctacgatgttgatttattttgttgct<br>tttatatgcttattttata	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	26438631	26438632	1001508	0	-	pAlu4-26126966;1104685316795; RIP_Alu_chr4_026_01	NA;NA	NA;NA	SINE	Alu	Ya5	tcaatgtgaggtccagaaacatgaggtctaacctgacgttagaaatgactactggctctatttatagatgaagatccattacctttaagatgaaaaaaac<br>gctttaagacaggggtgtcttatctttaggcttccctggaccacactggaagaactgtcttgggccatacacaaaatacattaatgctaatgatagctca<br>aaaaaaaatttaaaaatcgcaaaaaaaatctcacgttttaagaaagttggcaaatttgcattgggccacattcaaagccatcctggaccgcgggttggac<br>aagcttgctttaaggggtccatgatcactctccctagctttgtgtaatctagcgcatattcaagtgtaagacttggccaggggaact<font color="green"><u>AAGAATGTTAGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATGTTAGCA</u></font>aagaggtcatattttttccccagacttttccttgtatcatctaaatataaatatctgaccaccacaataagaactcag<br>tcatgaaggtttaacgagcagaagaaaaccagaagccctgatttttgagttgtgtgatgaggaagaataaagggaaggacagccttgcagggaggaaaaa<br>gttctagaagagaagaaaagctgccagagccagctccaggccactgcaggaataacctagtcacactccttacccctttatatgatgatggtgggagtgt<br>ttctagatagttgaaatgtaagtaattatgagcatcctgactctgcccagcaccagtagacattatcaaacaggtaaagaagcaagaaattgactgacct<br>acatgctca	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	43399988	43399989	1001509	0	+	pAlu4-43249909; RIP_Alu_chr4_043_01	NA	NA	SINE	Alu	Yb7	aagttatatggtcaccatattcatgggaacctacattctctgattcgtacccacatgtccattctcattttttgctaccccttcctctctctctgtgctt<br>catctacacttgattttattttccttttatttttatgtctgtgacataatccatctattactgagtctctttttccatatattttccttatcatccctcc<br>tctctttctagttaagcccttttcattctccaaatcttagttctgaagtcagttcctgagtcaaacttttcatgaccctacagacaagatcagaatctgc<br>tatatgcttatatagtgctcagtagttaccacaatctgcagttatcgtatgtgtgctcctttttggctgatgccttttccttagtt<font color="green"><u>GAAATTTAAGCTAC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATTTTAAGCTAC</u></font>ctgaaaattagggcatatctttctttttctttaaccttccattttaccccaaggc<br>ctgacacataataacaagcatttaataattttaaatgcatttttttcttatgcagaaaaaggtttgaaccataaataaccatagtaagtgtgacactcag<br>ataacctgtgaagagatagctttaatctcaatcaaaggatttgtttatctctttcatctcctggaatatatgactcaaaggtcacccttgaatgatggtg<br>gaaagtgtcggctctgtctagacagggattgttctgcatgtcttctcacaaacgaagacaattaaggatgggtaagaatgatttattccaatctttctta<br>actatgtgggctgatgaaattgtacgtgttt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	138299006	138299007	1001510	0	+	pAlu4-138692211; RIP_Alu_chr4_138_02	NA	NA	SINE	Alu	Ye5	tgttggttgagcagaagaatcaactaaactaagtaccttctggtataaaaagattctaaaatgtataattacacaaacataatacaagtttgtttctttt<br>tcatgtcaatagtaatgggtgataccaccctccatgcacttattcaggaccttaagttaacagaagttctgtgattttttaacacatggctgtaaatggg<br>tttatcttcattccaaagggtagaaaagcattctgtactctagcagtcaagaatatgctactctcaaatctctgactatggggagtaaaattgactatgg<br>tctcagctgctgtgctttgaaaatcaacactgcaattatgccacacttcccacaggctgctcccaactggtgactgggcatgtc<font color="green"><u>AAGAATAATGTTACCA<br></u></font><font color="red">GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AATAATGTTACCA</u></font>aaatgccaagggtttggtctaggtcctgtggctcatcacacataaagccaatcaaaagagacaatgagtattgccacggaagaaggc<br>tttatttggatgctgtagccaaggagttgagaggtaagtctcaattctatctcccccactgacttaaattaggggttcatatagcagtgaagaaatctaa<br>cgatatgtggaaaaataggaattagggagaggtaaggaagcggagttggtcaacaggcagcaaatggtcagtgaggcagtcataatggacgaggggtctg<br>gtgtttcattgtccagatgtagtgatctggtaaatttcagttccttggtactatctgggaggcctgatgatcaatttcctgagaaaggaactttgat	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	181503037	181503038	1001511	0	-	pAlu4-182087477;1104685740288; RIP_Alu_chr4_181_03	NA;NA	NA;NA	SINE	Alu	Ya5	tacttatgtgtgcagggacgtcaataattcatatttttgacatccagacattatatgacccactgaatattcttaattagttggggaaggaagcatctgt<br>atggattcacaaattgttttaaacatgcttttaaatattttaaattagagcttccaattaaaattgtacatgtcacattgtctcatttaattccactgtt<br>ctttttaggaagcacagcctcagctgaacaagcctcactgatgtgagctgagctcaattagtttctgatgttctgccaaattgcctcattacctgtcata<br>caaacaccactgacacttttaaagtggagccctttgcatccatattattgtctttagaacaaaaataattattctcattagagtagtaaa<font color="green"><u>AATAAGCATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AATAAGCATT</u></font>ttgctaataaacagtaaaccaatatatttgtaatataaataatacaataaagcaatgatgagacataaatcaagtgt<br>gtgcttacacatatacgtatgtgcccctgtggggacacacgagcacacaatgttttaaaattatatagactgtgggtccttcatgcagtccctggaggtt<br>tgttattacaattactttgaccactgggttttccatattaactgacaatgtattgatgataagagaaactaggagttttccattctgtctatatttgaat<br>ttaaaatgtacttcacccttggatcataaaaccattatgaattcctcattgtacagaaggcttaaagtggcttaaaatacacttacactacattctagaa<br>gagaaagtataag	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	180256970	180256971	1001512	0	-	pAlu4-180841405;1104685739857; RIP_Alu_chr4_180_01	NA;NA	NA;NA	SINE	Alu	Yi6	aacagaatagtctatatggattaatgaacaattaatttatttgtactactttctacttattaaaagatggacacaataattctgcagtattagaaaattt<br>cccaagttctttcttctcacttacattgctggacttctacttatacatattttcttcactgcataaaaaccttgtaaagttcaccaaaggctgtagaaat<br>tcctctgcagtgcagacaatgcaaacaaaatccacataaagattcccactacagggtaaactctcaaaaatattttctggcactacttgacagcattgga<br>aacaccaggccacttttgaatgcaataaatagactctaacatgcaacgcatatacctggacacattctggagacatttaggcaat<font color="green"><u>AAGAAATTTGATTTA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAATTTGATTTA</u></font>atggagtaaaaggcagaagaggtcaatggaactagctgaccaatattaatcacagacttgttaaaactgttatcaagaaacaaa<br>tacaagtaataatttatagaaagaggattagacacatgagctgtatgtaccagatgtcagcatgctattctcaaattttctaaattcaacaaatgcttcc<br>tagagtgaatttattcttctaaatttagcagcttatgaagggaatttttaataagcaagaaatacctgtaatctgtttaagttgtctatattaattaaga<br>aaattggctgcaaagcacacttaaagcctattcttcacgatacacaaaacaactttacctacatagtttatctttgaaaaacgagtttattttcccatac<br>c	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	175534306	175534307	1001513	0	-	pAlu4-176118742;1104685738339; RIP_Alu_chr4_175_01	NA;NA	NA;NA	SINE	Alu	Yc1	agagaattctgtacaaacagactttgttaaaataattcttatctttcattagcctccccacataatttagttacttttccagaattgctgctctttgtta<br>aacctgataatatggtttagatgtttttttccactccaagtctcatgatgtaatgtgatcctcagtgtgggaggtggggtttggtgggaggtgtttgagt<br>ggatccctcatgaatggtgatatgggttggctgtgtctacccccagatctcatcttgaattgtagctcccataattcccttgtgttgtggaagggaccaa<br>gtgggagatatttgaatcatgggggcagtttctcccatactgttctcatggtattgaataagtctcacaagatctgatggttttat<font color="green"><u>AAGGGGAAACTCCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATAAAAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGGGGAAACTCCT</u></font>ttctcttggctctcattctcttctgctgtctgccaccatgtgagatgtgcctttcaccttctgtcatgat<br>agtaaggcctcaccagccatgtggaactgtgagtccattaaacctctttcttttgtaaaatgcccagtcttgggtatgtctttatcagcagtgtgaaaac<br>ggactggtaatagactggtaatgtacagtaatggactggtaccagtagagtggggcactgctgaaaagataccaaaaaatgtggaattgactttgaaacg<br>gggtaataggcaggggttggaacagtctggagggctcataagaagataggaaaatgtgggaaagtttggaatttcctagagacatgttgaatagcttcac<br>ccaaaatgctgataat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	174786708	174786709	1001514	0	+	pAlu4-175371158;1104685738113; RIP_Alu_chr4_175_02	NA;NA	NA;NA	SINE	Alu	Ya8	gttagtgacagtcctgtccatcactgtttctgatattctgaaatttgtgatggcttagaaatgaaactaaaagcatttaaaaattttgagtagaaagtga<br>aattttcagacttaagggactttgaagtgaaaaaaaagttgaggcatagagctttaagagtcaatttccatcttcgttagcttttttttctttacttaaa<br>aatatcatcttaaaaaaaaaacactgagccctttatcacaatttttctccatactttcctcttctggtttatggacttctgcataggaattagtaaaatt<br>tgtaggcaaaactttagtttcatatgggacccatttaattgtgtaccttaaatccattggaaagctagaataagctttcatcttaagaaa<font color="green"><u>GTTCTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAG</font><font color="green"><u>GTTCTTTCTG</u></font>aagataatgggaggcttctgtttatggaccaacaatttgaggaatgtagtgatcacatgtatacaaataaatggctcaaaa<br>aaggtcctcaataaatcataattatcacttattattgagtctagaatgataaaagaattaacaaaatatgttttataggcatttatttaatttaaataat<br>gctttatctaaaagtctgaaattttgaatgatataagggaaattaaaataattgccttctattttcaattaactaccactataaccaaaccataaaaatg<br>tttatttttttgaaatacgaattttggtaacatcctgtatgtctcaatgtagcctattgattaaataaattatataggtatttatatcatataaagtatg<br>ttgtcatta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	167338800	167338801	1001515	0	-	pAlu4-167804973; RIP_Alu_chr4_167_04	NA	NA	SINE	Alu	Ya5	gatataatagattttataaaaagtttcatccaacagctgcagaatacactcttctcctcagtacataaattattctcaaggataaatgacatgttaggca<br>acaaaacaagtcctgaaatactcaaaaagtttgaaataatatcagtcatattctcgatcataagggaatacaattaaaaatgagtaaaaataggaatttt<br>gggaattatacaaatacatggaagttaaataatatgctcctgaagaaacactggatcaaagaagaaattaagaaaaaaatttaaaaattacttgaatcaa<br>atgataatagaaacacaacatacaaaaacctataggatacagtgaaagcagtactaagaggagagtttacagctataaactcctgcattg<font color="green"><u>AAAAAGTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAAAA</u></font>agtagaaaaatgtcaggtaaacaacctaataataccttttaaagaactgaaaaagcaacagcaagccaaacctca<br>aattagtagaagaaagacataataaagatcagagcagaaataaatgaaatggagatgaagaaaacaatataaagttcactgaaacataaagttgtcttaa<br>aataaacaatttaaaaaatcaacaaatctttggccagactaatgaagaaaaaaagagagaagaccccaaaacttacatcagggatgaaaaaggagttatt<br>acaaccaatacaacagaaattcaaaggatccctagaggctactatgagcaactatgtatcaataaactggaaagcctagaatacatggacacattcttag<br>acacatacaacttag	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	164757764	164757765	1001516	0	+	pAlu4-165223948; RIP_Alu_chr4_165_01	NA	NA	SINE	Alu	Yd8	cagagtaactggagaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaattttaataattgctcgtatataat<br>acaggactgaattagagaaatagaaatgcattttttgtgaaaattaaaaacatcatatgtataaatataaggcaattatcatatttgtataatcataaga<br>aagttaagtgcctaacataaataaggacacaccactaatttttggtggattcagaatcannnnnnnnnnnnnnnnnnnntgccttggcctcccaagtgct<br>ggggattacaggcgtgagccaccgcgcccggctaatttatttttttgatacacatttactctacgttatatttcagggcttgttaaaaga<font color="green"><u>ATGCCTCCTA<br></u></font><font color="red">ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GTGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCAGCCTGGGCGACAAAACGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAGG</font><font color="green"><u>ATGCCTCCTA</u></font>gtctctctgctgtgaggaagaaagttctacctttagaataaagtagacaaaataaggaaacagagggtccat<br>ctggccaaagctgagtaatagaagctgtagtcatcagcagaggtaagtgtgacccccaataaacagtgataccaagtgcgccgccattggcagcaaagag<br>cactgagtctgcttgatgacaggactacaatagaagaattattcctgatctcatgtgagttagcccattagccccctggaagcctcacagagtaactgga<br>gaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaattttaataattgctcgtatataatacaggactgaatt<br>agagaaatagaaatgcat	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MARCH1:NM:001166373:3/8	
0	chr4	151011640	151011641	1001517	0	+	pAlu4-151477829; RIP_Alu_chr4_151_03	NA	NA	SINE	Alu	Sp	ataatgataaaaacaaaacaaaacaaaacaaaaaaacgcacaatgaaaattcccatagtgagctcctgtagattttgggaggccgaggcaggcggatcac<br>ctgaggttgggagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacgactgtaat<br>cccagctactcgggaggctgaggcaggagaatctcttgaacctgggaggcagaggttgtggtgatccaagatcgcgccattacactccactccagcctgg<br>gcaacaagatcaaaactccatctcaaaataatgataaaaacaaaacaaaacaaaac<font color="green"><u>AAAAAAACGCACAATGAAAATTCCCATAGTGAGCTCCTGTAGAT<br></u></font><font color="red">TTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAAATTAG<br>CTGAGCGTGGTGGCGCACGACTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACCTGGGAGGCAGAGGTTGTGGTGATCCAAGATC<br>GCGCCATTACACTCCACTCCAGCCTGGGCAACAAGATCAAAACTCCATCTCAAAATAATGATAAAAACAAAACAAAACAAAAC</font><font color="green"><u>AAAAAAACGCACAATGA<br>AAATTCCCATAGTGAGCTCCTGTAGAT</u></font>tttgggatattcttggccccatgtatgaggagcaaaaaaaccagatcacagatctgatctgctggttccatcc<br>tacccaggagattagatacgatttcttcctcagtgggtaagctacaaagctttttggttactgggtgggttttcgtttttacatttagctaatttatttg<br>gccttaagttaaactcctcccagatttcaatgctaaaacatggatttgtggacatacctatttcttcatagatattcgtagggtcaaagcagattttgta<br>cccccttctcggtagaaggtatcacagaccatacaactggatgtgactttaggagatgatttggttcagtcacttgcctgcag	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DCLK2:NM:001040261:1/16	
0	chr4	104744617	104744618	1001518	0	-	pAlu4-105137815;1104685673325; RIP_Alu_chr4_105_01	NA;NA	NA;NA	SINE	Alu	Ya5	gaggtcgggagttcaagaccaacctggccaatgtggtgaaaccccatctctactaaaaatacaaatacctgagcgtggtggtgcatgcctgtaatcccag<br>ctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtggggagccgagatcgtgccattgcactccagcctgggcaacgagga<br>agacaccatctcaaaaaaaaacaaaaagaaaaagaattagtagcatctctttgcttaacctgtctgagatcagttggacagagaccaatcaaatatggcc<br>atgtctctattaaaccttggctcagccaggttattctgcagggctcttatactaccgccttaccctgtgtatgaaggatgctgct<font color="green"><u>AAAAAAAATCACCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>AAAAAAAATCA<br>CCTA</u></font>tggtgctgtgtctatgttttgtggaaataatatggctcaagaagactcaatctagccatctctttcaagctgcccaactcatactgtcctgccaaa<br>tttactctcatgtagctgcatgccagttggtacagagtggccaatgaggagtctgcacgtacactcccaacggtgattatgagtaacatgtgtctgctcc<br>tagcttaaattatgatcattaacataatgtactccttagtaagacaaggcccacagaaaagagaatcagaacataattcagaaattttttgtctcttttc<br>tatttttgtttccacacttcccttagggactaaagaataaattaacagtttcttcattcatttttctgtatagatttccccataatatt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	67106617	67106618	1001519	0	+	pAlu4-67044377;1104685186329; RIP_Alu_chr4_066_02	NA;NA	NA;NA	SINE	Alu	Ya4b	tttttgcactagctgaaactttctgcctgaaaccctcttcacccatattatttcatgacttatcccttctagactctgagttattggtgaaaatgtcatg<br>tcctccaaaggactacttgctgcctaatagttcctaatttctttattagtctattcatttattttgtggcttcctccacaagaatataagctccacaaga<br>gcaggggattttgtcttattcgtatcattctatcttcaaagagggtaagagtacttgacacattattggcactcagtaagcaattattgaatatgcaaca<br>tgcaatgataggagtgccccaattagtatagaaaatcatagatacgtctttgtaggaaaagacacttgcagaatttcaagtt<font color="green"><u>AGAAAGATTAAGATTTGC<br></u></font><font color="red">GGCCGGGCGCCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AGAAAGATTAAGATTTGC</u></font>tcaggtgtcctttatgtgtgggctgaaaaaaaaaaagttattatcctgaaaagaataacacggtatgagggagttcacctt<br>acatggataaagaaggctgtgttgatgacctcaaaggaaaaggcaacacaagaaactaaatgtttataaggtaatgtcacttcttagtaaagcttgtgtt<br>taagactggaagacggaagacactctttacgtggtgttccagcaatcttgcttgataaaaatgtcttggtataagatcatgaagaaaaagtaagtgtaat<br>tattaggatgaaggggagagaactttgctttctaaccagggacctcagccagctggagaacacttgctacacttgactagcaatcactgaactgtgtata<br>a	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	79159516	79159517	1001520	0	+	pAlu4-79552295;1104685667515; RIP_Alu_chr4_079_01	NA;NA	NA;NA	SINE	Alu	Ya5	caacttaaccatgatcatgcaattaataaactgctgcccagagattttacctgaagtctgactgatgccaaagctactgacattaacttcaacatgcatg<br>aaccatcgaatggattgaaagtcagaactgacttattgaaaaagattttctaaaaatatcatttgggtctgccactgattgtattattgtgctactattg<br>ggctccctaggaacataagcaagtctttgactcaataaatctccttgtatttgaccaagtctatgattggtatttcctcccttcccttctgttaaaaatt<br>ttcagttttcttctgactacacatctattctgttagaataatactttttctagttgctgactcttttctttttaaagtgaatctattttt<font color="green"><u>TAAAAAAGCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>T<br>AAAAAAGCT</u></font>taagctttaaatttgaacttctgaaactcccaggacaagaccaattattgtattcataaagcattctgtcaatttaaaaagtttatttttc<br>tagtttttggcttcctccaataattaatcttgagtctttatgccatctaatgctaataaggttctgtttgtaccagacactgaagtgaaggtatgccttt<br>aagagtattccttcatttctgcatgagtgtattcctgagaagctgggagtactttaagtattggcaaatttgataagatttttattgtatattatggagc<br>tttatgtttatagggtaaatattcctaaaaaaatcattatttggcttgctaagcaagtcatgtcagaatctgagctggtggcaaaaacgccatgaaaaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:FRAS1:NM:025074:3/74	
0	chr4	82630149	82630242	1001521	0	+	pAlu4-83022928;1104685668257; RIP_Alu_chr4_082_02	NA;NA	NA;NA	SINE	Alu	Ya5	tttattgcagcacaattcataattcataattgcaaagacaagtaaccaacctaagtgcctgcccatcaaccaatgagtggataaagaaaatgtggtatat<br>atagatgtggaatactactctgccataaaaaagaataaaataatatattttgcagaaacttgcatggagttggaggccattattctaagtgaagcaactc<br>aggaatggaaaaccaaacaccgcatgttctcacttgtaagtgggaactgaactatgggtatgcaaaggcatacagaatggtataatggactttggagact<br>cagaaggggggaaggtgggaaatggtagtagagaaaaaactacatattgggtacaatgtatactacttgtctgaccagtacactaaaat<font color="green"><u>ATCAGACTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCTGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>ATCAGACTTCA</u></font>ctactatacaattcatccatgtaaccaaaaaccacttatccccaagagctattgaacttgaaaaaaaaattatctgttttt<br>tcattctccagctgaatggataagacactaagaatataaaagagggtagaactgtaagatggaaggaagttgggtctctgaatggaacatctcctcatcc<br>ctcccatctgaacaagaaaattaatttttattgtatcaagctactgaaatgcaggtttttttcatacagtagttagcctgcctggctagtgagtattatt<br>attaccattcaaaagcagaagttttaagaatgtaaggaatggaatttaaattataaatatatgtttaagtttcattctagtgaaaataagatacttgaaa<br>atgccaat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	83340693	83340694	1001522	0	+	pAlu4-83733473; RIP_Alu_chr4_083_01	NA	NA	SINE	Alu	Ya5	attaatagaaatgttattacataatgagagcaatatatttgacaaataaagccattcaaaacacattgtctatggagagaagaaatttaaagggtttcct<br>ggtgatgaaatattgaaattattctataataccacttaacccccactgctcccaccctcctgtcattcctctgcttgcagggtctatgaaaaacatatat<br>gccccagatgtttcatggttcaagggcaatctaaatagtgagtcaatttcataggccatgtctttcatgggaagagtagttgctccagattatccaggct<br>caaattccattaaaggaacaagaatggatcaattgtaatataatcctactttgctacaatagagctcaacactcagaaaccaagtgtatt<font color="green"><u>AAAGATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATTACTG</u></font>gaccagtcttaatgcttaaagtcaagtatgcctgataggagttttatagtttaatagactgcagaatgta<br>atcagcattggtgcattcaattagctgacttcctcattttaaaatcaggggattaaagctaaagctgggcatggtgacacatgctggtaatcccagcact<br>ttgggaggcctaaacggtaggatcactggagcccaggagttcgagaccagcctgggcaacatagtgagtccctgtctctaagatgataaaccaaaaaaaa<br>aaaaaaaaaaaaaaaaaaaggttaacttgggcgatatggcaagacctcatttctactaaaaatcaaaaaaaaaaaaaaattagctaggtatgatggcaca<br>tgcctgtggccccagctaca	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	56371962	56371963	1001523	0	+	pAlu4-56221885;1104685021301; RIP_Alu_chr4_056_01	NA;NA	NA;NA	SINE	Alu	Ye5	ggctcacacctgtaatcccagcgctttgggaggcggaggcaggcagatcgttagagctcaggagttcaagaccagcctgggcaacatggcaaaacccctt<br>atctactaaaaatacaaaaattagctgggtgttgtggcacgtgcctatggtctcagctacttgggaagctgaggcaggaggatcaactaagccctggaag<br>tccaggctgcaatgagctgtgactgcaccactgcactccaggctgggtgacagaacaagaccttgtctcaaaataaaaaataaaaaataaaattaactgg<br>atgtaatttccagttttatacatagctgctaaacatgtttcttaaactttatacttggaaatcattcaaacatgcagaaaagtt<font color="green"><u>AAGAATAGTTCAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGGCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAATAGTTCAAAGAG</u></font>gcttctacatatcctttatcctgatttgaccaactgtcaacaacaatcctgttgaccaactgtcaacattttgcat<br>tattgtccatatcatacataaacatattttttgaaccatttgaaagtaaaatgcacatatcatacctttttacctctaaatacttcaactatacctccta<br>acaacaaggatattctcttaaatatctacagtatagttaccaacttcaggaaacttaacagttatacagtatcttaatgtaatgcctattttctctcttt<br>ttttgttttagttgagcaaaaactgccctccaagactttttccctcttccaatactgaatccaatccagggtcatgtactgcatttagctgtcatgtcta<br>cccagact	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CLOCK:NM:004898:2/23	
0	chr4	100376808	100376809	1001524	0	-	pAlu4-100769574;1104685672398; RIP_Alu_chr4_100_03	NA;NA	NA;NA	SINE	Alu	Ya5	tctagttgtctgtctgataaatgacattggctagtattccttcataacatctctcatctctagtggagaaattgataaggaaatatgagaagaccaaaac<br>tagaggagcagttcagcttatagaaatgctaagggaattcaaagggacttgaaaaacagataagctttaaaatatgaaaaatgctactttttaatcaaaa<br>gtgacattacaattttagagactaaaacatgatgttcaagaaaatgtctttcattgaaagaatacaaaaatgtagactggtagttcttcatagagtatgt<br>ttttgctgagaacaaattagcctagattttatctttactcttctttttggaaagtagagttatttggggacaaaagattattgatat<font color="green"><u>AAAAGTTGATTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AGTTGATTAA</u></font>acatgtattatattgtaaacttcttggaacagaaactacatcataaccattttaatactgccaacttaaataacaaacagaagaaaaggc<br>tctccaaaagaaaatgatgtttattcaggaatagggtattgcaatgggaatatgtgtgccacagtgtactatgtgcacattcagggagatgaagaaagac<br>aaaggttttgaaaggaaaaatgaggcgggatgtggccaagaaagccaactagaagcagctagtgtgcatggctttcatggagaaaaagagaaggggcaag<br>taaatacaacaccttcaactgaaacatccaggtacccgcattgggactaattaaggaaacaatttgacccatgaagaatggagaaaagcaaggcagg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr4	102041748	102041749	1001525	0	-	pAlu4-102434515; RIP_Alu_chr4_102_01	NA	NA	SINE	Alu	Yb7	tgatttttgcatagtttccttagatatttgtggtatactgaagaaacaagaaacttaagacccgattcatgtttaaattagagacagccacatatgtaaa<br>ttttcaaaatattcaaagactttatggatgttatgatttaagtcagtttaagatactgtgacacctatttgttttatagaggtaaacaaaaatgattcat<br>ctcactgtggcatataaaaaaacttttatatagtgtcttcaattgaacattagtcctgacatgtaaatttaagataatctaatctaagttctcagatttt<br>tagatttgtacttcttttggacaaagaaaacaatctcatgccttttcttaatgtaatttgaaatttcaaagtgaaaacatcattataa<font color="green"><u>AAGTAAATGTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAAGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGTAAATGTAA</u></font>agtatttataatttaacaattatttttagaaaaattatatatgctactgcctctgttgagtaatgtgatggatgg<br>aaatgggcaataaaatgatttgcccatatcagacatcaacgggagacctaaggcctaaacccgtaggagtttccagtacagagagggaaatccactgatg<br>tcaggaagctgatgcttttcagtaccattgtttatatctacatcttctcaagtatgcccttcttgaagccatatttttatttttgttattatcccagtat<br>aatgcagcacaagtgaaacgtcaaccagtcttcagtgtttattcatcttttaatacagaatatttagtaaatatttcatgtttcagtgttttattcattg<br>tttggatatttaa	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPP3CA:NM:000944:2/14	
0	chr5	103464427	103464428	1001526	0	+	pAlu5-103495288; RIP_Alu_chr5_103_03	NA	NA	SINE	Alu	Yb7	acattatttaaatgcttttcttcaccttttaattagagaagacttcgaatgctggtttgggaagaagtgaaaaaggaggatttcttgcggtactgcctta<br>acttgtgcatcctagtcagtaaaatgagctttgtagataaatgggtccattcattatgggaaacagcttaacaaatatcagtagctattgaaacatgtat<br>ctttgaggacaatcttgtcccaaccctcttacgcaataccactttcaatcatatagagttctggaaattcaatattatctatcttattatatttacagtg<br>gtattttgacttcccctatagactggaaattggcttcctggcagctcacgagcacccttgacatttaaaagagatttagtt<font color="green"><u>AAGAAATAATATATTTTGC<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTACAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAATAATATATTTTGC</u></font>ttggcttatttgcatttaagggcttggtggtggggacaatgcaagtctggaatttaaaagagcctacagcaggaaa<br>tatcactttaaaagctatcgtaatattgatagttaaaaccatgttaattgatgtcttcttggtaaggaaagaaaaatatagagaatcatgagcttaaaag<br>cacttgagcacttgggaacaccaagatttaaagatggaataaggaagagcaattggggaataaaacagaaaaaaaaacccaaaaaacaaaaaagtagtca<br>gaattgtagaagagattagaaacattgtgaatggaatgacaggaaaagatgaaagtttcaataaggtgatggtgaatagtgtgggaaagcgaaaagaaat<br>acttg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	61857119	61857120	1001527	0	+	pAlu5-61827643;1104685480632; RIP_Alu_chr5_061_03	NA;NA	NA;NA	SINE	Alu	Yb7	atgggctacatacatgttttgaataagtctgcttagctgtcaggattaattagagtcagtttctggttttgctcaaattatccatttccagctcatgact<br>taaccccagttcaggtattccagttctgtggtttactataattgaattttaaccatgacttatgaggctttagcctttaaaagtatttacccacaagtaa<br>aacatattttaggtattttgagatgcctcctcctcttgtttcagatggaccagcttttgggaaatatgattgaaatgtgggttgatcgaatggacaacat<br>tacccagcctgaaagaagaaaactttcagctttggctttgctctctcttctgccatctgataataggtgaggaaatgttttctt<font color="green"><u>AAAATTTGTTTCTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAATTTGTTTCTTTC</u></font>aagcatcaaaatgtaaacactatttttggccatcagtattgctgtgtgttgctgggcagtggtacttttatata<br>tatggatgtgaattttgttagctgataatgatgtggtaaatgttggtctggatccagaaagcagtgagtgggataggtactgttggattgtgggggctgt<br>agtttattttggttgtattcattttacaaatttatttcattcttgtctgaatttccattttttataattacgttttattagactaatcttcagtcctctg<br>tttacatagatatattaaatatctaacatttcaaagtcaatagcacttcataaagtatgttataaagtgtgttaattcaacagtattattagttttgttt<br>tctttttatt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:IPO11:NM:001134779:27/30	
0	chr5	55927981	55927982	1001528	0	+	pAlu5-55898505; RIP_Alu_chr5_055_01	NA	NA	SINE	Alu	Ya5	gaagtcaactgctcagaggtatttcaaatacccagaaatgtccttatacaccacagtgttcaatcaacttccccaaagtcccaacagtcgtttagaatat<br>gacttcacccaggactgctgggttgcacaactccaggtatactgtttgtattatattctatgtgaaggtctcccctggagtagtacagcattgccccagg<br>ctgttttcctacatttatacgagagtaaaaatgaagaggagaactctctggctacctaaaaaaccttgtgttgatctcacctcagggctaatgctggagt<br>ctcttttggctttagtgccaaggctctacttgttgattcacttatcaaaatatatttgaatatattttccaggcagaaagcctttt<font color="green"><u>AAAAGATACAGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>ATACAGAGA</u></font>cacaaagcttctctaagacaaactctgaaccagggcaacagagaaaccctctgctcccaccaccaggctatctagttgaaacaggagttat<br>gactggataagtgtcaagaacataaacggaaactgtctctgaagcacagggcataaagcagccttaaagctgaagatggagtagaagcattgaaaaaaat<br>cctccagtaatccaacctccaccccaagggcaaggtaaaattagatgaattgaactcaatgacacactgagggcaaccatggcaacagcaaaagccaaac<br>acaattcagctcctgattagactgattcaacatcaccccctccttcctgattaatagcccagcagaagggacgtgtccatttctaggcataagga	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	39292981	39292982	1001529	0	-	pAlu5-39293110;1104685203214; RIP_Alu_chr5_039_01	NA;NA	NA;NA	SINE	Alu	Yb7	gctatctatatctcttaaatggggaacttaatgtatttaccttcaaggttattattgataggtgaggacttatccctgtctttttattgattgttttctg<br>gttattctgaatatcttttgtttcttttttccttcctagttgtttatctttgcagttgaatggctttctgtagtaatctgggcatgtaagaccccctggc<br>cttccaaccaccacagatgcctttctgcttccccctgaactccagcactctccctttaacatttcagttaaatcttgtttattcattacattgttccttt<br>cttgtcctgactattcttttttattcagtatgttatatgattccattttatttccagtattgatatattactcatgtctcttttaaaaa<font color="green"><u>ATATTTTTTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAATAT</font><font color="green"><u>ATATTTTTTAC</u></font>tctataacatatgattcacaatatacatccttaatttatcatagtctgccttcaaatgat<br>attatgctgccttatgtatagtgtaaaacaaatacactatatttccaaatcctccctcccatttttaatgctatttttatcatattgtatcatgagttta<br>tagtgtatgtatattttacatacatatttttaaatttttacatacactataaactcatactacaatgcgacaacatttgctgtagataatatatgttaga<br>gcaattaaaactagaaaggtatatttttgccttcattttagttatgctcagagctcatgattactttatgtaggtccaaattttagttctttgtggtaat<br>tcttctgcctgaaaaatttcctttggcat	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:C9:NM:001737:9/11	
0	chr5	45606119	45606120	1001530	0	-	pAlu5-45606247;1104685204628; RIP_Alu_chr5_045_01	NA;NA	NA;NA	SINE	Alu	Ya4	gtgaaatcatattctctttttttcctatttttaattattttttctttttttgttttacatcagcttagacatgatatacatatatatgcacccctacccc<br>acacacaatctgttctgtaccaggtggagtttctgtatacactcactttgttatactgtctaaaacaaaaatcgtttgttctttttctatttttcactag<br>gtttaatgcaaaggaaaatgttttaaggtataaaagtgagagaaattttctggcaatggttgcttaagtagtataagagtcatggtgttcttgatggtgg<br>aaccataaactgaaagagttggctgacttaacatttccaaccctgcctggggaatatttgacaaagtttgaggtgaaagtttgtgtt<font color="green"><u>AAAAAATTAAAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAATTAAAGG</u></font>atgtgaagctaatatttcccatcaagtatgcttacctttgaattttaattttgcttataagtttcattattcacacacaagt<br>cagaaatgttaatttagctctttctttagatgtattaatttctctcacaaaatgtcttttcaaacttattttttaatcttcacaggtgagttaattttct<br>ttaatttgtaatcatttttaaacaatattaccagagtgatacatctactctttaaaattgtaaatataattatgctaagagaaaaatgaaagtcctcatt<br>cagatgaggactgactccaatagtttcattcaccagataacaactgttaattgatttatctacattcttccagtctctttggctatgtactcatgtacaa<br>tgtac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:HCN1:NM:021072:2/8	
0	chr5	170201340	170201341	1001531	0	+	pAlu5-170136882;1104685440859; RIP_Alu_chr5_170_02	NA;NA	NA;NA	SINE	Alu	Ya5	ggcactggaatacagcagggagaaaagagataaagaccctgcccatgtgaagcttgtgcactacggggaggagaccaatcaataataaacataacaaatg<br>actcgactgtggaggctgctagaaggagatgaggcagggaaaaatgagaagagcagggtatgggggacagaatggctgtgatggcgaatattggaatatg<br>aaatgtgactgacctgtagaggcagttagggaaatgctgattttgcaaatgagatcctgtcatttccaacatggatggaactgggggacatgttagatga<br>aataacccaggcacagaaaagctcacttcccaggttctcattcatttgtgggagctaaaaattaaaacaatttaattcacggggat<font color="green"><u>AGAAAAGTAGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAAAGTAGAATG</u></font>atggttaacagaggccgggaagggtagtggggttggggggatgtagggatgattaacaggtacaaaatatgcaatg<br>aaagcaatgcaatgaatatgatctgttattgatagcagaacaaggtgactacagacagcaataatttgttgtacattttcacataactgagggagtacaa<br>ttggaatgtttgtaccacaaggacatgatgaatgcttgaggttatggagaccccatttaccctaatataattattacacattgcatgtctgtatcaaaat<br>atctcatgtatcccatcaatatatatatacctactatgtgccataattttttaaataagccatgctgaaaagggctcaatgaagtgacaaacagaatgaa<br>ttattttccc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	162231952	162231953	1001532	0	-	pAlu5-162167486;1104685442930; RIP_Alu_chr5_162_01	NA;NA	NA;NA	SINE	Alu	Yc1	gaaagaggaaaaaatacagaaatagggaaaacaaatttcaaagacagagatattgaacagcatacctatcttaaatctggtgctggaagaaaggttgtga<br>atatatttttaaaagtagtacaacttacttaacaatgatcctgggtttccatgagttgtattttccatactacccaaaataagcatctctgataagcaag<br>acttagtgctttagttaacattacatgtttaaaataaaaaaaaaaaaataagaaatatacttgttttaagttaaataagtttttctctacaattctcatt<br>cttttgctttatataatcatgataattattgctgatctctctgttgctatcaaataccacccctggaaagtttaggattgttcctt<font color="green"><u>AAAATGTACAGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAATGTAC</u></font>ataaaatctgagaaaatctactttggttagaatacacatgtgaggaatgggctaagtgagtaagctgtagcaagaagagatggtttcctg<br>gaaatagaagcagaggaagcttttgtgattaaacataaatcctttgagtattctattagttagggggccattttttgtaaataatgctctcttttgaaga<br>tgcaaagccaataaaacttttttttatttttttttattatactttaagttttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtg<br>ccatgttggtgtgctgcacccattaactagtcatttaacattaggtatatctcctaatgctatccctccccccaccccccaccccacaacaggccc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	155290625	155290626	1001533	0	+	pAlu5-155226167; RIP_Alu_chr5_155_01	NA	NA	SINE	Alu	Ya5	taatggccgcccctgcagcctggcttcccacctggctgcagtttgaggcagcaggttctcattatgctttattcttttttcaagaatgtgttcttgaaat<br>tgaattagatttgcttccttcatagcatgtgttgacttttaaatgacttcctggtgggttttcctcaagatcttcaaccacgatgcagaggttctcaggg<br>taaaatgaagtatccaacccaatgagaaaacaatgtattatttccttaccttcaggtttaactggaagatgctgcattttgagcagtcatgatctttatt<br>tccccaaatgcttttgctttccctgctgggatggcctaagtcaattaccgtcctctgcctgaagtattattagtcttcattcccagaac<font color="green"><u>AAAGAAAATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGAAAATTC</u></font>ataccatcatccaggaaaattgccaatcttcttgaaacggttgcattttccatgggtactgaaatgtactctccatgggagat<br>ttggagatgaaggtcaggattccctatagatgtatcccagggatgttgctcagaaagatatctctttcctttaagtacttgagaaggaatctgaattggt<br>aatgtttctattgtttttcatttgtttattcattcattaatacattcaacagatatatattgaccatctgctgtgtgccacgcacataatagaaaaaaca<br>gacaaggaccctactgtcatggaaactgcatttcagtaggggggacagacaaataaacaatcaaataggaagtacattagatagtggtaactgctaagga<br>gaggag	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	148096781	148096782	1001534	0	+	pAlu5-148079938;1104685235457; RIP_Alu_chr5_148_01	NA;NA	NA;NA	SINE	Alu	Yb7	gcactcaatactaacctgtgaaaacagccgccctgggctgtaccctgcagagccacaggggtggagccgtccaaggccttgggagcccatcccttgcatc<br>tgtgtgccctgaatacgacacatggagtcaaaggggatttttatggagctttaaaatttagtgacttgcctgctggatttcagacttgcatggggcctgt<br>agctcctttgttttggccaatttctttcatttgaaatgggagcatttacccaacgcctgtacccctattgtattttggaagaaactaacttacttttgat<br>tttacaggctcataggtgggagggacttactttgtctcagatgagactttggactgtggacttctgagttaatgctgaaattagtt<font color="green"><u>AAGACTGGCAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGACTGGCAACTG</u></font>ttgaaaagggttaattgtattttgcaacgtgagaaggacatgagatttgggagaagcaaggggtagaattatat<br>tgtttggatttgtgtccctgcacaaatctcatgtcatactgaaggaaggacctggtaagaggtaacgggatcatgagggcgatttcccccttgctgttct<br>tgtgatagtgagttctcaggagatctgatggtttaaaagtatgtgacacttcctccttcactctctgtctctcctgctctgccatgtgaagaaggtgctt<br>gctttcccttcaccttctgcctctcctgctctgccatgtgaagaaggtgcttgcttccccttcaccttctgccatgattgtaaatttcccaaggcctccc<br>agtcatgcttcc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	146369627	146369628	1001535	0	+	pAlu5-146352784;1104685235827; RIP_Alu_chr5_146_01	NA;NA	NA;NA	SINE	Alu	Yb7	aggtttttctctaagatctagaacaacacaagaatacccacgtttaccactttatttgacatagtactgaatattctagccaaagcaagtaggcaagaga<br>aagaaacaaagggcacccaaattttaaaaagtggaagtcatattgtccctgtttgcagatgacatgaccatatacatagaaaatcctaaagactccacta<br>aaaaactattagaattaataactgagtatagtaaagttgcaggatacaaaatcaacacaaaaatcagtagcatttctatatgctaataatgaactatctg<br>aaaaagaaatcaagaaagcaattctattacaatagctacagaaatgctagacataataaccaaggaggtgaaatatctctacaattaa<font color="green"><u>AACCATAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AACCATAAAACA</u></font>ttaatgaaagaagctgaaaaagacaaataaatgaaaagacatcctgtgttcatggattggaagtattaatattgttaaaatg<br>tccatattatccaaagtaatcttcaaattcagtgcaatttctgtcaaaataccaatgatattcttctcataaatagaaaaacaatcttaaaattcatgtg<br>gaagtgcaaaagaccctgaattaccaaataaattttgagcaaaagcaacaaagctgcaagcattacactacctgacttcaaaatatactataaagctata<br>gtaaccaaaacagcatggtacttatagaaaaacagaccaatggaacaaaatagaaagcccagaaagaaatccatgcacttttaaccaactgttttttgcc<br>aaaggt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:PPP2R2B:NM:181676:1/9	
0	chr5	18570165	18570166	1001536	0	-	pAlu5-18569744;1104685545587; RIP_Alu_chr5_018_02	NA;NA	NA;NA	SINE	Alu	Yb10	ttcttggtgcttttgtcaaaaataagttggcgatagacaggtggattaatttctgagctctctattctgttctgttggtctatgtgtctgtttttatgca<br>agcactgtggtgttctggttactaaagctttgtggtgtatttagaggtatggtagtgtaatacctccagcttttttcttttagcttaggattgaagctaa<br>gaaaaaatacgttaaaaccaaataaatctcagcaaactaattctctggcattatttaattcttcttaaaactgctcatttgcatattcctccccaaaaag<br>atatgcccaaaggacacaattgtttaccaacttgatgtggattccacattatcacttttctctctttctgcggaggtttttcatatcaatt<font color="green"><u>AATAGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATAGTTTC</u></font>acatggaaggggaaaaaattaaaaatattcatattctattagcattcactgaatggttagaatggtattagtccgttctcacact<br>tctatgaagagatacctgagactgggtaattcataaagaaaagaggtttaattgacccacagttcctcatgactggggaggcctcaggaaacttaaaatc<br>atggaggaaggcacctcttcacagggtgacaggagaaagaatgagagatgagagaaggggaaagccctttacaaaaccatcgtatctcatgagaactcac<br>tattatgagaacagcacgagggtaactgcccccatgattccattatttcccactgggttcttcccatgacacatggggaatatgggaaatataattcaag<br>atgaga	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	86372696	86372697	1001537	0	+	pAlu5-86411408;1104685646902; RIP_Alu_chr5_086_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	aacgcatttatttaggaatgctttccaggaaaaggcatttttgtcataggagaaaaatctatgggtcataacataggacatgacagtttcatgcgggcta<br>ttgcccctgaaggccttccaggaccttctacatgaaggggttattgcccccggaaggccttcaggggcaatatgttccaggacaacatgaaggtcccgga<br>aggccttcaggggcaatatgtcccaggacaacaggtagaagtggtaaacagtggtattttccaccagcataggcccaggccaagatgtgtgtttgtgtct<br>acatttttagcaaaatagttttaaaataaaagaaaattaaaaatagaaaaggtacgtggaatagggatgtcaagatacaaaggatata<font color="green"><u>AAGAAAATATTT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATATTT</u></font>tt<br>ctacagctgcacaatgtatttgtgtttaagtgttattatgaaatagtcaaaaggtttaaaaccatttaaaagtttataaactaaaaaagttacagtaagc<br>taaggttattaaagaaagaaaactttttaaataaatttagagttacctaaacgtacattgtttataaagtttacagtagcgtacaataatgtcctaggcc<br>ttcacattcactcactcactcacaccattcactcactactcactcagggagtgactcatccagagcaacttgcagtcctgcaagctctgttcatggtaag<br>tgccctaaacaggtggaccactttaaaaaccttttgtatcatatttttactatgccttttctatgtttagatacacaaatactatt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	6284536	6284537	1001538	0	-	pAlu5-6317258; RIP_Alu_chr5_006_02	NA	NA	SINE	Alu	Ya5	tatgcagaatgagcaaagacttggaaccaacccaaatgtctatcaataatagagtggataaagaaaatgtggcacatatacaccatggagtactatgcag<br>ccataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccaccattctcagcaaactatcacaagaacagaaaaccaaacactg<br>catgttctcactcataagtgggggttgaaaaattcttatataacactttaatacctttcattcatgtaagtttatttgatcctcacaaccttattatgtg<br>agctagtcagttattcttagtcccatttaagaaatttagcaaccaaacttcagaaaggttaagtggttttctgtttgtttcctt<font color="green"><u>AAAAACGTTTGAATAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACGTTTGAATAC</u></font>ataatttcaaccttgtcttctgttttaatattaagttatagttatttaaaatctgtgtcaaacatctg<br>tgcctccttgagtttctttctatgtatgtttctgttggtcttcttttgtgagcttttatttaagtgtttttctgttttaaattgtatccggatatggtat<br>tgccaatttgtatggaagaatattattgcttttctccagtgtagatttacacctattttgcaagatgcctggctacacaaacaatgtgagattacttctg<br>tctaatttcaaggcttcagatcattttaaattgaactgaaatactgtgagattctacgttatattgactcttatttttagggtgcagcttttgggattca<br>aatccaagagaaagac	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	16716627	16716628	1001539	0	+	pAlu5-16749365;1104685152404; RIP_Alu_chr5_016_01	NA;NA	NA;NA	SINE	Alu	Yg6	tggatggaagagaaagtttgcatcctggagacaggacgaaatctatgtagttttaatgtatactttggataatttaatcctaccaaaaataagtagaaat<br>acttatttccacacaatctgaaaaatactatttcagaatgcctagatgattaataatgattaataacagggcacactaaaccctctacaaaaatcactta<br>caggcaatccttacctcctgcagcttatttagataaaggacaacagaggtgctgacaaacagggacaccaagagcagggagggtgcttcccaatgaagac<br>agaaatgcatttatttatgtatcaatgaatccaattgccctgaacattaccgagccttccataatttcatgaacagtgcatgacaat<font color="green"><u>AAGAAGTATGACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACAAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AAGTATGACAG</u></font>gtggatttggaaacagccatttgcctatggtaaggggacattcaatctgtgcttatttaatgaaagaaaatacagtgagtttattatcc<br>atggaccattaaagttataatgtttttcagcatttgagaaactcgcaaaaaccaaccaaggcatcctgagaagagcccaggaagacgtggctgggggtgg<br>taggaatccagcttgtcacacaggagccatgggtttttccagagccggccaagattttagggaaaagccattttgtagataacgagactggaaattagga<br>aggcaaaatgacttgttcaaaccggttattttttttatttttttgagatgaagtctcactcttgtcacccaggctggagtgcagtggtgtgatcttgg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MYO10:NM:012334:19/41	
0	chr5	3995200	3995201	1001540	0	+	pAlu5-4027937;1104685056779; RIP_Alu_chr5_004_01	NA;NA	NA;NA	SINE	Alu	Ya5	actagtaacattttgccaactcaaacatcaaacccagacttgcttctttcacaaaagccactagaacttcctcaggaaatagttctcatagaagactcat<br>tgtgcaatgagctatggaaaactcctcagtcttgcaagcagaaagagtcctttggttttgtggggacaaggatgaggctgattgcaggacaaaagcaaaa<br>gagagaaagaagcaaggtagtaactgctcacctgcagccctcagcctgcctgggcaccttccctccagagttcatgaactccaccagctgcaggcaagga<br>tcaggctgaccctggatgtatgtgcccagcaatggcttttccacttataaaactccagccaggtcatgagtgccgcctcacct<font color="green"><u>AGAAAACGACAGAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGCCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGAAAACGACAGAAATC</u></font>cactgcacacatggttccagaaaacaacagaaatccactgcacacacggtcccagaagtgtgggttgagggtgggt<br>ttgtaatgagctctttgtttcctgtgggtcaccctgccaggcccggtcaggatggggtctttcaccttcagctcaaccttggaccttcatccggctcctt<br>ggtgtccccttccccagggaagtgcctggctgaccacgtgccctcggatgaggcccacaggtttgttatggacccattctattctaaccacatcagcagc<br>aaccgagccttagcaatctcatttccaatttgggatgacagagagatctaagttcttgagcagcatggaatcagccagggacactgacctacacacgttt<br>atcagca	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	32470069	32470070	1001541	0	-	pAlu6-32517693; RIP_Alu_chr6_032_03	NA	NA	SINE	Alu	Sg	ccccaatttgatatccagctttaacacaatttctctctaattccagcaagatttgtaatagttgtagacaaagttattctaaaacgtataggagaagcag<br>gggaactagtataggtaaaacaaatttcataggaaaaaagagatggagaaataactgtaaccaaatttcagaagttttatagctatagtaatcaatactg<br>attgacattagtgcagggatagacatagattagtggagcagtataaagaatccagaaatacacctatgccaactcattttgacagagatacaaaataatt<br>caatggaggtaatatagtctacagtcttttcaaacaatgatccaggagaaagtggaaatccatagacaaaaacaaaaccaagcaaaaacaaatag<font color="green"><u>AAGCA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGACGAGGTCAGGAGTTCGAGATCAGTCTGACCAACA<br>TGGTGAAACCCCCATCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCACGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCG<br>CTTGACCCCAGGAGGTGGAGGTTGCAGTGAGCCACGATCATGCCACTGCATTCCAGTCTGGGCGACAGAGCAAGACTGTCTCAAAAAAAAAAAAAAAAAA<br>GGAAGCAAAGGGAAAAAG</font><font color="green"><u>AAGCA</u></font>aaaaagaaacaacaaattctcacaccttatgaaaacatttaccccaattaaatcatgtctacatgtaaaacatttag<br>aagaaaacatatgagaaaatcctcaggagctagggcccagtgtctgagttttgagttcttagacatgacaccaaaagcactatgtgtaaaaaacaaaaaa<br>caaacaaaatcaataaatagggctttatcaaaatttaaaacttttgttctgtaaggtatcctgctaagaaatgaaaagtaaactagagatatggagaaaa<br>tatttaaaaccacatatattaccaagaataaattatctagaatctataatcaactataaaagctctactataaaatctatagtagactgcagactataaa<br>atttaattacataatggg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	170500769	170500770	1001542	0	-	pAlu6-170176227;1104685292281; RIP_Alu_chr6_170_02	TGCCAGTGACAATGGGACGTTTGAC;NA	GTTGTAATTCTAACGCCTCTC;NA	SINE	Alu	Yc1	agatgtctgaagaaagggagctggtggctgggttctctgggctcttggctccacacttcacctgagttctctttgtttctccagaagctgatggaactgc<br>cgccatttcccaaagtaaaggaggtgagctctggggtgggtgaggtttcatcggtagcccggcctccgtggatcgctgcatgagccgggaaggtaagccg<br>agcggtaggacgtccgacggtgagtgaagatgctggttctgtgaagggaacggtgggcacctttaatctcagtgtccgagtcctgcctgccagtgacaat<br>gggacgtttgacaaggtctcttagactttatggaagcatcatgtgatcagaattctgtgtgaggggacgggcatccctggcttaa<font color="green"><u>GAATATTTTATTGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAGG</font><font color="green"><u>GAATATTTTATTGTTG</u></font>gatgcaaatgaaagaacaaagagaggcgttagaattacaacattttctagaaaacggtaccc<br>gattctgccagcacttactgagcactgggcggcctctaagcatgggcgataccgcagggactgaagcctgagggcacacacggacagagtctgtgtgtgt<br>ggcgtctgcacagcgtgctgtggagcacaggaggaggatggggggctggcaaagcgttccctggggcgatgctcaggtgagcagctggtgcctccattga<br>aggggtgattcacttttttccccttgcttgccagaagtcgagtaataataattatattttctaaacttctgaaaagttgcagacacatcataaacatcct<br>tagatacacaaggattattggga	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	491;NA	169;NA	NA;NA	intergenic
0	chr6	133160121	133160122	1001543	0	-	pAlu6-133095237; RIP_Alu_chr6_133_02	NA	NA	SINE	Alu	Ya4	aaggtgtttgaattcccaccaattaacttttagcaaggtaaacagatgctaaacatatatctttaataggcccaataaatactattatcaattaatagaa<br>cccaatcaaaacaacagtaagcaaaacattacactgagaacaaaagtgctaatttactgatatgctagtttaggtcagtgctcattttccagtgtattaa<br>tttttttcatttattcattcaactaatgcttgcattttcaatatgcaaagccctttgctaggtacaacactaagttaagacattacaataatttcttctt<br>tatgttcgatccatgagcattgtgcatacttgcaaatacaactgcaagattaatgcacacttatttaaaaaactatgccatggttt<font color="green"><u>AAAGACTGTATTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAGACTGTATTGA</u></font>tttcctgagtaaccagcccgctctcttcatcatagatgaatgctaacttttctcccaaaagttcctctaccattgcagagttggta<br>tataaattgcttcccaaatgttgcgatatcgcaggtttatttttttttccttctgtttattttgggtttctctggctatctaagtgtcctctcatttatc<br>ctacacagatgacttcctctttcgagctctttcttgatacaggtgaaccagtggtggcccatttgtcaatcctattttacaaataaatatcatgcaataa<br>tcacagcacttgctaaataaatgtaacaatgaaagagattttgggtctggagggtgtactgccaaggaaatagaaaaagtgagttattatcatcaccttt<br>	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	120568263	120568264	1001544	0	-	pAlu6-120503383;1104685230552; RIP_Alu_chr6_120_02	GAAGCCACTTAGGCCATTATC;NA	ATGATATTGGCCATACCATC;NA	SINE	Alu	Yb7	aaacacagcctcatccaagaaaatttatgagcttaatacatataattggagttaggtaggttatccagagatctctacaaatcaagctatcaggaattct<br>ttagttagccatggcaatcatttggaagaaggctatttacaagtattgcttggtcatagaatatgtacattagacattttttttttttttgctggccact<br>tccaaattccctcactctccccattgagattgtaatcaaccaaattttgtaagttactatttcctactaacaatttaagatatatggcaggaggtgagta<br>gtatgagataaggtccaagaggaaacatagccagaataatatgaagccacttaggccattatcaagacaatgacatttactttg<font color="green"><u>AAAGAAATTGAGAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGAAATTGAGAGTC</u></font>aatacaggggctttactgaagagtgacatgatgtgatttatttatttaaagcagcatattggccaccgtgttaagagtaga<br>tgtcaggttgatatcacttttcttcctacttcacaaagtgagactagtcaactaattcaataatccagataatgacttgaattgacatgatagcatggta<br>gatattgagaagtgatagaactttgaatatattttgatggtatggccaatatcattaattaatgattaattaattaatggattagctctatggtgtatga<br>atgagatctgtattttgagaaaaacagagtcaatgaagcccatgagtattttgtgctaagaagacagaacgatggagtggccatcaattgctgaggaagg<br>ttg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	614;NA	311;NA	NA;NA	intergenic
0	chr6	104772665	104772666	1001545	0	+	pAlu6-104772799;1104685081877; RIP_Alu_chr6_104_01	TATCATCCTACGCCAATGAAAGATC;NA	GAAACATGTTCATTATCCGC;NA	SINE	Alu	Ya5	caaatcaaacaccctgcctatacatatactgtcttctggattttctaactgatgagccagtagctgaaactgacatacagatcttacagtgtagatatct<br>gtattacgcaatgaaggacagaggtagagagaagtggggaaaacaaaaaaagcatcagagagacctgtattcctgacatcacaaacctcaagtcctcagg<br>tggaggttataaaggcaggacccaaatgcctgtcagctgcaacacatacagcaacccaactgtgcaggctggaaaacagcagtgtcacagtagacactgc<br>agtgagaggcagcccagtagagcacactgcaccagaccagcggctctcagcaggtctctgagtagcatggaatatcatcctacgccaat<font color="green"><u>GAAAGATCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>GAAA</font><font color="green"><u>GAAAGATCATGG</u></font>gacattggctttgtggttgtagtgaggggatgccatactaggaggcagataacagtttatgcgacaaggaaagcagtgagaacc<br>gcatgattttcagtggatgccagcacggaggactggccatgctcctggcccaaatatatgaatgtccatgtcagagacaccacatgcacaaataccagaa<br>ccagatatcctccctgccatccagaggctgtttctacatccagaactaattccagggagaaagaagggagacgaaattctgaattaatatgcggataatg<br>aacatgtttctttttggccatcaggcaaaatagaggtacaaaatagagaatacagttgttataaatgaataaagtttcagcaggtacctttgagtacatg<br>acctg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	637;NA	333;NA	NA;NA	intergenic
0	chr6	97017682	97017683	1001546	0	-	pAlu6-97017829; RIP_Alu_chr6_097_01	NA	NA	SINE	Alu	Yb7	taagcaaaaactgaaggaatttgtcaccactcacctggccttaccagaaatgcttaagtgattttcacttacatctggaagtgaaaatcactgtcatgaa<br>aacacaccaaaagtataaagctcattggtagagcagatatatgaggagaaagagaaaagaatcaaaccttgtcactacagaaaaccaccaaaccacaatg<br>attaactataagagaaaaagaaaggaacaaaagatatacaagacaacaggaaaacaacaaaatggtggatgttaagtcctcacttatcaataataacctt<br>ggctgtaaacagactaaattcccaactgaaaagatatagactagctgaatgaattaaaaaaaaaaaagacctaagtatatgctgcctaa<font color="green"><u>AAGAAACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAACTCAC</u></font>ttcacctaaaaagacacatatagaataaaaataagggatggaaaaaaaatccatacaaatggaaaccaaaagcaaggg<br>agaatagctatacttatatcaggtaaagcagactttaaacaaaaagagacaaggttattttcacttcagcaagaagatgtaacaattgtaaacatacaca<br>catccaataccacaacatccagatttataaagcaaataattaaacccaaaggagaaatagatttcagtacaattatagctggggacttcaacacccctca<br>gcattggacagatcattcaggcagaaaattaacaaagaaacatttaatttaaactgcactttagaccaaatgaacctaccagacatttacagaacatttc<br>attcaacagct	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FHL5:NM:020482:2/7	
0	chr6	74341749	74341750	1001547	0	+	pAlu6-74291907; RIP_Alu_chr6_074_03	NA	NA	SINE	Alu	Yb7	ctttggccaaaaggcactgacacaaggaagcttttcctgtctgccccaggctggctgaggactgccaccttctctgttccaaagatgtcctgtaccttac<br>agcactgcattatgcaggctatattgtattgaaattctgtccatccatgtctgtctccctctggagaccttgggccccacaggaaccatgttttattttt<br>ttcctcttattcatttttaagtcctcagctgacaaagaacctaggtcatagtaaagtttcaaaaaaaaatgtttaaagaatgaatgagtagatgctgcac<br>atttcttgggtccaagatttaaagatgcagcttcacgtaacacatcattttacaacactgtcaactataacgtcatgtgcttt<font color="green"><u>AAGAATGCAGTCTGGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCTTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGCAGTCTGGTTG</u></font>gtacaaggtgactcatgcctgtaatcccagcattttgggagtcttaggcaggaagactcctt<br>aagcccagcagtttgagaccagcttgatcatcatagcgagactccgtctctacaaaaaataattagctaggcatggtggtgtgcacctgtagtcccagct<br>actcgagaggctgaggtgggaagactgcttgaacctgtagggttgaggctgcactgagctgtgatggtgccactgtactccagcctgggcactgagctag<br>actcaaaaaaaaaaaaaaaaaaaaaaggaatgcaatctgggcttctcctcctaactctcttgcctctgaatattcctttttccgaagtgtgtcgagaaac<br>aacctaagtttggagagatta	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC17A5:NM:012434:6/11	
0	chr6	68314069	68314070	1001548	0	-	pAlu6-68264208;1104685199362; RIP_Alu_chr6_068_02	NA;NA	NA;NA	SINE	Alu	Ya5	agccccaaagaaatgctctgttttaagtactagaggcttttgagacaagattcagtttgcaacaatttacctgtttaattttttgcctggtggagtggag<br>aaaagatataactaactatctttgtacaatttaaaggggaaaaaagtcccattacattattttaatgagataatcttgaataagcccctcctaccagttg<br>agaatcactgaccgaatagataaaaattaaggtcattttttagatctcatgatttaattttattagagcaaataagacaggacagcactttttcttagtg<br>aaagttagtacagaaattcaaaatagaaatatataaacactttcttatctattttagattgataaatgtgtatttaaactt<font color="green"><u>AAATGTATATACCAAATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGTCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAATGTATATACCAAATCA</u></font>aattctagaagtcagttccataaaaaaacaaaataaatatgcatgcataaaattgcacagcttgctaaattatccctatt<br>taatatcttccacttatgtctgaacaaccaactcataagctatattttcagtagcttttgaagtttaattgaacataagatctaaacacattttaagctt<br>ttttattgtttaagaataagttctatatggcttgacaggattaaaacaataaactccaatcattctctgaaccagtttggttcagagaatgggtaatttc<br>tgattgagtttcctttagatgatcaacataatctttcataaatgtcatatgatgaattgttaataaaaaagttacaatgttaacacaattctagaaagaa<br>t	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	91125866	91125867	1001549	0	-	pAlu6-91076011; RIP_Alu_chr6_091_02	NA	NA	SINE	Alu	Yb7	caagtgttcctaagatagacatgtaaccagcaaagcatcactgcccagagtgcttgaagagctcctacaaataaataggataaagtaaaccccaaagaga<br>aaccaagcaaataattcacagaagatgaaaacctgaatggctaaaaaacatttaaagagatgctcaccttcaatactaatcacagaaatgcaaagtaaaa<br>cagtggcaaaatgttcatcatacattactaagtattgggaaggttgtgagggaattagaattctcattcagtcctgatagaagggtaaccattttggaga<br>gcaatttagtagcacccagaaagttgaagtttgtacaccatacacagattagaaatactaagatacaagtgcacaagaataactacac<font color="green"><u>AATAATATTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTCGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATA<br>AAAAATAAAATAAATAATAATAATAATAATAATAAT</font><font color="green"><u>AATAATATTTTAG</u></font>gacatattgtcatagaaaaatagtgaagcaacctaaatattcatcaactgg<br>ggattgaaacataattatgatacattcctagatggaaactatgtagtggtttacatgtgaatgagctagttctacaagcatcaaaataggataagtcttg<br>gaaacacaatattgaataaaaacagcaaaatactatttatttaaacattttaactaccccaaacagcactacaggcaatattgtttgtggatccatacat<br>ataccataaaattcaaaggcatgaaaaagaaataagaaccaacttcaagagaatagttagctctggggtggaacaaagagaagattccaattctatctgt<br>aattttttcatacctttaaaaaatcctacagggcatg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	163190380	163190381	1001550	0	+	pAlu6-163023807;1104685087549; RIP_Alu_chr6_163_04	GGACAGACTAAACTTGTAATCTGC;NA	AGCTAAGGTAAAGATCGCTGCTCAC;NA	SINE	Alu	Yb7	ttgtatagcactctgtgcttaaccctgttgattaacttcctgtgtcttacaattgcccatttttctgtcttaatccaactctatattgcaaactgagggc<br>tcccttttcccaccatggtaaatgtggaggcagcttcctggaagaggccttgaggtcacatcacaaacagtaaaacagcatatgggggagaatctcctcg<br>gaagaggacagactaaacttgtaatctgcacaccttttatttaaaccctctcagtatattaaagtcctccaagaaagacagttgtcatagggagtggtct<br>agacatagccaacttttcctccatgaaaagaataagcctttattttgttcagccactgggagtttcgaggtggttttttactgctct<font color="green"><u>AAAACCTAACTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACCTAACTTA</u></font>tcctaataccggggacaaacgttatttactctggtgacaaacattatttctattttacaagtgaggataaactgttagggag<br>gttaaattacttgttcaaagctcatacgtgttgtagcaaggactaagtagtcttaggcatagggctcagctttttaaacctaccttgatggtttttgtgc<br>ctcgtctatagggatagtattttctactccaaagtatatgccatgatgatccagaggatattgatcatgcactggtaagaagaatgtctctgtataaaca<br>aatgttggtataatataaacattgataaattgtgagcagcgatctttaccttagctctgaatgtctaaatttcacttggaatttttcagtagatttatat<br>gaact	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	853;NA	547;NA	NA;NA	intron:PACRG:NM:152410:2/7
0	chr6	131175477	131175478	1001551	0	+	pAlu6-131110606;1104685228287; RIP_Alu_chr6_131_01	CTCAAACTTCGTTTCTCAAG;NA	TTGGTGACACTCTAAGCGTTACCAG;NA	SINE	Alu	Yb7	cttcccagatctgacagtcaccagcaaaggaaattttttaagagtgagctgcagccagtggggggtggagatgccaaaatgactttgagacactgaggtc<br>attcctagtcatccttcagattttaaactcaaacttcgtttctcaagtaaactggtttctaaaggaaattggttaaatttatgatagttcaagtctccta<br>ttttgttctctcatagcattttatttccttcagagggctgatcacatttacattttgttcatttgttaatattcacacctaccttcctggagcacatcct<br>ctctgccaaggagggggaccatgtttgctttgtctatcacggaatcctcaatacccagccctaccctagcacatttaggcactcatt<font color="green"><u>AAATACTTTTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAATACTTTTTGA</u></font>atgcatgaatgaatctttccaaatttatctagtttgttcaccttatatgtaagtttatactttaacttcctaaatctgtttaa<br>caaggcttctcataaaagttagcctctgagatgggcaaacttcaaaagttgtgtgtgtgtctgtgtgtgtccattgtaaaaatgaacataaggtgctagg<br>aataagtgatacaatgaattcatttaaaaacttattaaaatgccacaagtgaaggtggagctactggtaacgcttagagtgtcaccaattttttgctagt<br>attcctgattaagaagcaactgattcataaaatttagagaaaaaaacatccagtgctattaccttatgtttgtataacactcacttttctcattcattat<br>ctta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	857;NA	553;NA	NA;NA	intron:EPB41L2:NM:001135554:14/15
0	chr6	78364272	78364273	1001552	0	+	pAlu6-78314427;1104685406879; RIP_Alu_chr6_078_01	NA;NA	NA;NA	SINE	Alu	Yd2	gggccagttttccaatctctgatttacagcatctctgagatttcttactgaacagggagtgttatagataggaatgattgatggctaaaagctccataaa<br>ggcagagatagacttgttttgttgactgttatatccctgtgtctaccacagtgcctgacaggttggggataattaaatatatctgttgaataaaagagta<br>aggaatggaatatttgatggaaaattacctaagttaggttaaatggttctatattcagattttcaggttctctgacatgcactgtatggtactgccattt<br>tggttagagcaaattcagtagaccttccttatctgtgggttctttatccatagattcaaaccaaccacagattgaatatgtttaaaa<font color="green"><u>AATTGAAAACAAT<br></u></font><font color="red">GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCGTCTCTA<br>CTAAAAATGCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA<br>CGTTGCAGTGAGCCGAGATCCCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATT<br>GAAAACAAT</u></font>aatacaacactaaaaaaaaaatgaataaaagtactactactgtttattttttatgttcattattataacccttgcattttggaaatacagc<br>aagatatattgaaatgcaatattttttcgttgataatcaaattgaatttagatgcatctggttgatggaatattgtatatacaacttctctctgctgtcc<br>ttgtcctttacattgggattttgtagaatgagtcaaattcacattttaatcctctgttcttcagacagtaagtttttgagtaccttaccatctctatgtg<br>tttaaaacagggtggctagaaaagaagctctttttctttttatttttttgttttgttttagtttttatttttattttttattatattttaagttct	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	161206190	161206191	1001553	0	+	pAlu6-153704791; RIP_Alu_chr6_153_01	NA	NA	SINE	Alu	Sx	aactttggaaggtgtcatccccagaccaacaccatagctttttagttttttaattttttattttttaaaaaagagaccagtcttacaggcagagaggttt<br>tggttgatctggtaaatggatggatcccactgccatatgttcactgttgcaggttttttttttttttttttttttataccataaagtgggtcctttaggt<br>ttaggcactattctatgggatttcatattcataaatcagatcctctatgagcccttgaatagtgcactgtctcgaaagttgcaggcttggaaattattcc<br>atacatgaagtaggtatcaatttctataagaaggaattattgctgtatgtatcaaaaacatttctaccatcaagacgatgaatgttaaaaa<font color="green"><u>TAACAATGA<br></u></font><font color="red">GGCTGGGCACCATGGCTCATGCCTGTAATCCCAGCATGTTGGGAGGCCAACGCAGGCAGATCACTTGAAGTCAGGAGTTTGAGACCATCCTGGCTAACAT<br>GGTGAAACCCCATCTCTACTAAAAATCCAAAAAATTAGCTGGGCATGGTGGCGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGC<br>TTGAACCTGGGAGGCGGAGATTGCAGTGAGCTGAGGTCACGCTGTTGCACTCCAACCTGGGCGACAGGGCAAGACTTCATCTCAAAAAAATAAAATAAAG<br></font><font color="green"><u>TAACAATGAG</u></font>gatctattatgtattgtaaacatttctttcttttgctcatgaacacttctttaaaatccactgacagagcattaacatgaatactaaaat<br>tcatgtttggattattgaaaccaacaaaacatctcactggtaaattaactgatgtacaaaatcattctgactgtgtcaaccatggaactttaaaacgtct<br>taacacataaaaagatatgttacttttatactttatactttattatgaatatttaaaagccatatacagaaagaaacacatgcatatgtaatcatacata<br>gaaagacttgacagcacacatgtccactgcgggtttcttatgaaaaatgccaccttggctaaatgtcaatgcatttatatatcaagtgattttgtaagca<br>a	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	83274747	83274748	1001554	0	+	pAlu6-83224902; RIP_Alu_chr6_083_01	NA	NA	SINE	Alu	Yd3a1	cagacttctgtctagaaactgacaagcagattctaaaatacacatgttattgtaagggactcaaaatagccaaaatagtcttgataaaagaaaacatatt<br>agtataattcacacccccgtgctccaaaccttacggcaaagcatcagtaatcaagacaacacaatactgatgaaggtaaaatatatagattgatggaaga<br>gaattgagagtccatatataaaactatgtatctatagtcaatggattgttaaagtggtgccatgtgcaattcaatgaggaagagacagtctttgaacaca<br>ctggatcaacaacgtacacgtgggtcgccacttgcaaaatagtaaattggaacccttaccccaaagcatacaaaaatattaactca<font color="green"><u>AATGAATTAAAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAAGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTATTAAAAATAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATGAATTAAAG<br>AC</u></font>atacatgcaagagctaggataaaccatatgcgaaaatcttcaggattttggatctagcaaagaaatagctgtaacaccaaaaacatgagcaacaaaat<br>aaaaattagatatttaaaatttcttaaaaattaaagacattggtgtttcaaaggacagccaagcaagtcaaaaagcagctcaaaaattatgataaaatat<br>ttgagaaacaaatatctatatgtctgcatatatatgtatcttgaatatagaaaaattgttttaactcagtaacaaaaatcccaactcaaaactgataaat<br>gataggaatagatgtgtatcccaagaagatacacgaatggtcaataatcccataaaaagatactcaacagcatcactcatcaggcaac	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	13521266	13521267	1001555	0	+	pAlu6-13583805;1104685173713; RIP_Alu_chr6_013_01	NA;NA	NA;NA	SINE	Alu	Yb7	tcatcagggaaatggtaacatcacctattggatactagatgatagtaaggaatcattaattttttgtagatctaacaaagatgtggttgctttcttaaaa<br>ttccttatctcttagagatacatacagaagtatttacctttgaaattatataaagcctgggatttgttttaaaatgacatattagcggtaggagtagagg<br>ttggaaaggagatatagatgaaactagatcatccatctatcaataactattgaaggccaggcactgtggcttacatctctaatcctatcactttgggagg<br>ccgaggtgggaggatcacttgagcccaggagttcgagaccagcctggtcaacaaagtgatatccaatctctaaaaaatatatatataaaa<font color="green"><u>AATTAGCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTGCTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTAGCTGGG</u></font>gcatggtggctcacacctgtagtcccagctacttgggaggctgagctgggaggattgcttgagcc<br>ctgggaagtcaaggctgcagtgagctgtgattgcaccactgcactctagcctgggcaacagaatgagaacctgtctcaaaaaaacaaaacaaaacaaaac<br>aaaaaaaaacaatgaatttctatgtgcaccagaagactaaggccacctttccttgcctaacacagccatggcttatggtcccaagaagcatctaaagcag<br>gtagcagctccaaagcattggatgctggataaattgaccagtgtgtttgctcttcgtccatccaccagtccccacaagttgagagagtgtctccccctca<br>tcactttcctaaggaacagacttaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	13718478	13718479	1001556	0	-	pAlu6-13781007; RIP_Alu_chr6_013_02	NA	NA	SINE	Alu	Yd8	ttcagtatacaggagacgatgtaagttacaggcaaattcattttattatccaaatttttatataacatcatgttatataagagacttgggcctctgtgga<br>ttttgttttccacagttcttgaaaccaatgccctatggatggatacggaggcgacaactgttaatcatctcaccactctgcattagtccagtctcacatt<br>gctaataaagacatttctgagactgggtaatttataaacgaaagaggtttgactcacagttcagcatggctgaggcggcctcaggaaacttacaaccacg<br>gtggaaacggacacaagcacatccttcctcacaagacagcagcaaagaaaagtgcagaaaaaaaacaggcagataaagaccgttgtaaaa<font color="green"><u>CCACCAGATC<br></u></font><font color="red">AGGCCGGGCGCGGTCGTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTTGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>TGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAC</font><font color="green"><u>CCACCA<br>GATC</u></font>tggtgagacctcactatcatgagaacagcatgaaggtaggtaaccccatgactcaattacctcccactgggtctctcccacgacacatggggatca<br>tcacaactgtaattcaagatgagatttgggtggggacaccaccaaactgtccaaaactggtgggttcttgttcccactgacttcaagaaaaaccacagac<br>cctcctggtgactgttaagtttttaaaggtggtgtgtgtctggagtttcttgcttctgatggtcagacatatgcagtctctcctttactggtgggtttgt<br>ggtctcactggcttcaggagtgaagctgcagactttcgtgacaagcgttatagcttttagaggtggcgcattgaattattccttcttctcctcc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	20887915	20887916	1001557	0	-	pAlu6-20950446;1104685176015; RIP_Alu_chr6_020_02	NA;NA	NA;NA	SINE	Alu	Ya5	cgggtgcagcaaaccaacatggcacacgtatacatgagtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataatttaaaaaaaaaga<br>aattatgttccaccaaaaaaaattttttttttaaagattagccaggcatggtggtccacggctatttgggaggctgaggcaggaggatcacttgagctca<br>ggagttcaaggctgcagtgagctatgatcataccactctactctggcctgtgtgacagaaacagaccctgtctcttaaaacaacaactacaaaaaaagaa<br>aaaaaggaaagatcttaagcgagtgagttctgacaatcatctactgtgtagctcaaactactctaaagatataaaatactttcctctagaaa<font color="green"><u>GTAATCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA<br>AAAAAAGAAG</font><font color="green"><u>GTAATCCT</u></font>atgcacctcatcagacaatctctccctaccctcgtgcctacaagtattcagttttttttctaccacagattatttccagaga<br>ttcttgtgaatgaaatcatatcttgcactttttttgtgtaatgcttcttttactcagcataatattgttaaattcctgttattgcttaaattggtagttc<br>gttccttttagtcactaaataatagttcattttgtggataaattccattttgtccattcttctacagataaacacatgggctgtttctaatttttggtgg<br>ttacgactaaaatagctataaacatgcttatacaagcttttttgtgactaattttgacaaatttctcttagtaaatgagtagaattgctggattacagga<br>taagtgcatg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CDKAL1:NM:017774:9/16	
0	chr6	23978358	23978359	1001558	0	+	pAlu6-24040896;1104685177041; RIP_Alu_chr6_024_01	CTCTGTGAACCAAGTCCAGGGCATG;NA	ACAATTGCGAGAACATGCAGGCAGG;NA	SINE	Alu	Yb7	ctagggaatgctgacctgtctgaatgtctcttttctttctcttgatcatctatctttagactcaggaggaccaaaagtaactgaataaacattatcttgt<br>ccttggccttcaccaagcaaaattgtttatatctgagaccatttccctttagagtctgagatcattattttaaagtagattgtcaaatgctccacagttg<br>atctcagttcagctctgccatttgctgctctgtgaaccaagtccagggcatgacattaagactgtgactatataacatgagaaaaatgttttaagacaga<br>ataaaacatcacatacagtttctggcagtgaatcttaacaattgaaatatcgttgtccaaggaaacacttcaagatactgttacag<font color="green"><u>AAAAATGACAACCA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAATGACAACCA</u></font>tgcctaccccataggcagttgtgagaatttaatgagatgatggatgtgaatgagcacagtgcaataacatgcacagatttt<br>caataaatggtttgaatcacaatgtaatgaaatgtatttaatccaattcagtatgtgcatttcaggaaatagtgtggctacctgcctgcatgttctcgca<br>attgtgcactgcctaatttttatctttctccatgtttatactccatcctacaatctgggtcagtcttatatataattaggaaaagaagatgcctgtataa<br>tgttgcctgatgcatacaaaacaaagtccccaattctgaaacctctcctttttaatgtgatgtagtaaaatttaaatgttagtatccacatcttaagaga<br>gcatt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	678;NA	371;NA	NA;NA	intergenic
0	chr6	19137107	19137108	1001559	0	-	pAlu6-19199633;1104685175519; RIP_Alu_chr6_019_01	NA;NA	NA;NA	SINE	Alu	Yb7	tatttatagatctaatgaatcaatgcatggtttcaatgacctaatgaatttcttatatccacaaataagacactctcttacttcaaaccatcaaatcagt<br>atttctcagaactgttttatacatttttattgaaacagattctccattagaaaaaagtgatgtcccctccctcagtgattttgagactcgcacttagctc<br>cacagtaaagaccttgtacacacagttgatttctctgtgtgtgcatgtgtgtatgcatgctgtctgtatgcaagtgtgtatacattttcaaaatataaac<br>tacaggcaaaaagtacaatgatcacagatgtacagtatggtaaatttttatatagtgagtatatccatgtaaccagcgctcaaataaa<font color="green"><u>GAAACAGAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAG</font><font color="green"><u>GAAACAGAAACAG</u></font>gcacacagaaactccctcatactcccttgcagtcattaagtttccaaagacaaccatcatcttgacttctaatcata<br>ttaattatgtttttctgcttttaagctatatgtagatgaaatactaaaatatgtacatttttgtgcacggtccaacatttcatttacaagattcatccat<br>gttgttgtatgcagttgtagtttgttcatgttcattgatgtacagaatttcattgtatcaagattccatagttgctttgtccattctatagtggatgaac<br>gttttgattgtctccagtttggggctatatgggtaatgctgctatgaacatttatgttctttttgtgaacacattcatgtgtttcaatagggcatatatt<br>taagagtggaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	43895488	43895489	1001560	0	-	pAlu6-43896890;1104685507043; RIP_Alu_chr6_044_02	GAGTTCACCTTAGACTAAGAGAAGG;NA	AACCCAACTGCTGGCTATATGACC;NA	SINE	Alu	Ya5	agggcaaatctatatccttgtcctttctttgcagagataataaagttaatgggattatttcctgtgtacaagaatagggctgctaagaaaacattgtcaa<br>gtaaatgctgtttgcaaaggctaaactgaaaggccaaatcttccaccaggaggaagtaaagggtgtgtctacacgggctcacggggagcagtgccaccag<br>tgacttgatttgcctgagactgacttcccctctgcttcaccgggctctgattcatgcagatggctagagggcagggttgccaggcccatttccctggtct<br>ccaaggtaccaggtgagctggctagttggttagtctttggaaaaacagagttcaccttagactaagagaaggccccagctgaacttt<font color="green"><u>AAAGATTGTCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGATTGTCTGG</u></font>ataactttcctccttgtaaatggagaaactgaggatgcggagggggagctggtctcaggtcacatgaccagttgtagcaaggc<br>ctggtggggaagtagagacacagagatggaaaataacttgcctgggtcatatagccagcagttgggttgtaggggggaagctgaggcccagagaggagaa<br>atggcttgccaggctcctacagcctcccagtggcaaagtttgggatggaaccaggtcttcaactcctaggagacagcttgctctgtcatcagcccaagct<br>cccatcctcccctactacagagacggctcagggaatcactcaggtgtattcctgtttgccgagtctcaatcatccctgactgtgtcgccacacctcgagc<br>ccag	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	521;NA	217;NA	NA;NA	intron:LOC100132354:NR:024478:1/2
0	chr6	45260479	45260480	1001561	0	+	pAlu6-45261894;1104685506661; RIP_Alu_chr6_045_01	NA;NA	NA;NA	SINE	Alu	Ye5	gcataaatctcacaggacctataaaacaaaaatacaattttaaaaaacaaaaacaaaaatacaatttaaaaaacaaaaacaaaatctaatgtatacaggc<br>aacgaataccatggtgaataaaatggtacctcacatctcaatactaatattgaatgtaaatggcctaaatgttccacttagaagatacagaaatgcagaa<br>tggatacgtatccaccaaccaattatctgctgccttcaggagactcacctagctaacatataaagactcacacaaacttaaggcagaggggtggaaaaag<br>acattttatgcaaaaggacaccaaaagcaagcaggagtagctattcttataccagacaaaagaaactttaaagcaacagcagttaaaa<font color="green"><u>AAGACAAGGAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACAAGGAGGG</u></font>gacattatataatgataaaaggccttgtccaacaggaaaatatcacaatcctaaaaatacatgcacct<br>gacactggagttcccaaatttataaaacaattactaacagacctaagaaatgagatagacagcaacacaataatagtgggggacttcaatactccactga<br>cagcagtagataggtcattaagacagaaagtcaacaaagaaacaatggatttaaactataccttggaacaaatgaacttagcagatatatacagaacatt<br>ccatccaacaaccacagaatatacattctattcaacaaggtgtggaactttctccaagacagaccacacaatggggcacaaaatgagcctcaataaattt<br>aagaaaactgaaattatatc	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr6	51929673	51929674	1001562	0	+	pAlu6-51931068;1104685505154; RIP_Alu_chr6_052_02	NA;NA	NA;NA	SINE	Alu	Yb9	agcagacagatgcccacaagagagaaaaattcatatttaaatgcatcccattgtgccctactctccgaccttgtctaatgctgttgttttgagcatagca<br>gagcacactctaacgctcctgtcttcttagccagtggacgtgcaactgacccattgaatgaaggcgggcagtttgggggtttcttccagtagctataaca<br>atatcttgagggcagttatgctttctagaccatggtctcttctggacgccactggccatacagctggctggagctagaagtgcaatgtcactaagcacct<br>gaataaagctaagagccttcctgaaaggagagccttgacaatggtatcatggacccagggctcactgagtaagccagtcaaatagatg<font color="green"><u>AGAAAGAATTCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAGAATTCA</u></font>aacacttttatttctactcgccagcccatcatgattaaagatattcagagtttattgaacagccctggtggcttccttacct<br>ggctgaggggtggtgagcctcacatcttttcctggagcccgagtggtgcactcaatcttcctgggagacacgtgtctaatatcacatggaatgcctaaag<br>cgaattaaagaaatttatgtatgtgtgtgtgtgtaggtatacatatatatgtatatgtgtgtgggtatatgtataattatatatatatatatatatatat<br>atatatatatatagagagagagagagagagagagagagagacagagagagagagaggcagtcgggagatgtgatggcaagaccagactgaagtagacagg<br>ctccta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:PKHD1:NM:138694:13/67	
0	chr7	45775828	45776131	1001563	0	-	pAlu7-45482912; RIP_Alu_chr7_045_01	NA	NA	SINE	Alu	Ya5	tcttgccgtttatttatgacagaacacacgcaggacttgaaagatgttactaataatgtccactacgagaactatggaatcagaaaactggcagctgtga<br>cttatcatggagttgataacaagaagaataaagggcagctcactaagtaagtatatatttttttctccaaaaaaaggtattctttctgtagtcagtaatc<br>atattgtttcattttcattaaatttctcctggctactcagtagaaaatttggataacattctctatgcataacagcataaatttatattgttatgctttg<br>ttaatagtagaagcttttttgaatgaaccattttgataagagttttcacttacagattgtgtggaaacaaaggacaggcttt<font color="green"><u>AAGAAAAGGAATATTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAAAAGGAATATTTAG</u></font>atgaatttattcttggttaccttctctattcctattccagggagtaaattagctggagtttcagtttcttcttttggt<br>tgttagactggtgtaagtgactacgaagtgtgtagctttgccctattgagcttatatctcaagctgtggtggtttcatgttggagtcaaaaaaagagatg<br>tgtgaggaagctggtaaccatgtctgtgccctacttttaaaaaatttgtcattattgaagatcacaattacatcatatgtcacttagcaatggggataca<br>ttctgggaaatgtgtcattgggctatttcatcattctgtaaacatgattgagtgtacctacataaacctagatggtagagccttctgcacacctaggtta<br>tgtg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SEPT13:NR:024271:9/13	
0	chr7	46102179	46102180	1001564	0	-	pAlu7-45808944;1104685593638; RIP_Alu_chr7_045_02	NA;NA	NA;NA	SINE	Alu	Ya5	atacataacttttacaatacaatggaacaactgcacatcaatttggcactttcaaatgcgaaaataagaaaataaacatttaggtagatgagtggccagt<br>tatcagaatcaaagatacatgaatgttcatgcatgctacattgaaacttcattgactcttggtttaataagaattcatgggaactattctggagaaaaac<br>tattgtctttacttgagaaaagattagaaacttttgaagtagaacttgaagcagatgttgttgtgtggtaagcagtgtctaagatagcttccagtgatcc<br>ccttcctttgagggtgggccagatttggtgacctgctttaaaccaatggcccatgtgatgagtggtcactcccaaaaagaggttat<font color="green"><u>AAAAAAACAGACTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAACCAGACTT</u></font>tcagttttgggttgtctttcttgctctctcttggatcactagctctggggaagccagctgccatgctgtgagggaatcctgtgcaaag<br>gcaccatgtgggtgaccctagaagcgcatcttctgaggctgccaacaagtacatgagtgagcttggaagcaggtcctctcccagttgagccttaagatgc<br>ctcccctcccacccagccaacaacttgactgcagccccttgacagacttgagccagaaccacttagaacacagaaactgtgagataattaaatttttttt<br>taactgttaggttttggagtaatttgttacacagtcatagcttactaacactgattaccagcacaatcacagacaaattcagaaagttatcactgatg	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr7	57786450	57786749	1001565	0	-	pAlu7-57526665; RIP_Alu_chr7_057_02	NA	NA	SINE	Alu	Yb7	ggcagatatagacttctcagggacacctgggcactgcccctgcctttacacatttgtcaggtatattggctcatgggttcattctctttatcagagaaag<br>attacaggtttctcgtatagacaccaaaagatcaggtgatatattattgaaagttcactgcctattatagtctgagtaatataaaaaaataatggcatat<br>ggatggtctgaaggcaatattagtttcttctactaggtagggaaggaggtgtctttctctttttgtgaatttgggcctttgttgtaaattgggagttgac<br>atatttctgaaacataagggaaaaccacatccaaccagaacctaaccttttaatccatccaagagtttacttaattcacccaatt<font color="green"><u>AAAATATGGATTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AAAATATGGATTCTC</u></font>tgcaatacctgttcataatctctttagtccatattttctccattatgtccaactcccaccattcagctgttgatttatggtgaga<br>gctatttttaagattgtagaattaattactgaaaataactctacagactcataaaattcatattcacctctgcattccagtgatcagaaaaaatatgggg<br>cgtatttccaaatataactccttcactgtctcttttcaaagggcataacagagtgacagaattgaaggaagagggcagataatttaaaaatattatatag<br>gggggcacctcttgaaaaggaagcctaatatcctacaggaaggctctggccctaggttttcatctgtaaatcatagttactctaactcttgtagttacta<br>	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	64653129	64653431	1001566	0	+	pAlu7-64051017; RIP_Alu_chr7_064_01	NA	NA	SINE	Alu	Yb7	ctgatactctagtaatccactaaaaagttgagggtgtcctgggctcccctgggagtgccgtgggcttgggctggacaggtcgtggggagaatgctgggta<br>ggtgggtgcagctgcagccacaggggagccagagtgtgcagcatgtgtccagcgtgagcctcccgagcttccacctgggtcacatagtctttgtgcccct<br>gggaagcctctagaagccacacagaggcccatagcaactctcatgccctggagtgtctcaccagccactccagtgatgggccctccagtggctctgggac<br>ccaaacagggatgattcacaaagtccctaccgagcacaggccttcacagttcaacaagaaaatcctactgttgactggattttt<font color="green"><u>AAAAATCAGTGGAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAATCAGTGGAGGAG</u></font>gatcacactagaaatgatagatactgcaagaaacaaagcttgagtgaaagcttgttaccgtaatgaatggactcacacat<br>atcactgctttgcagtgatagcatcagccaaaagggctgcgaacatgaatcattaacaagttgaaatatgtcaaagatggctgtgtggtgtgaagaagct<br>gcatcagctgcacaggctaagcctaaatgatattccaaatggcagagtgtccacctgaataccatcactgtaatcagtaacaataaaagatagggaaaac<br>tgaattatttttaaggttgaaatgattttagcatgacagtttgttctcttgccaccgtacattgaatcatatacttgatgtttattgtgtgcctgtgatg<br>tgcc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:INTS4L1:NR:027393:9/14	
0	chr7	72084345	72084649	1001567	0	+	pAlu7-71482659; RIP_Alu_chr7_071_01	NA	NA	SINE	Alu	Yb7	ttgctgacgtcacagcccgaatttccaccacatttcatactaactccccctaaatttgcatatgcaaaccacgagcaaggatgatcaaacagacaactgc<br>gcatgtccgaggactttccagatctcccctttccttccaccaatcacttactaatctgagaatccatcccctaataaaatcactgccttaaaacctgcac<br>aggaagacaaatttgagctggacttagtgtctctttattagtcgacttgcaataaaaaagctttcttttcccccctcaaaaaccctatgtcaattagtat<br>tggcttccagagcatcaggcagtgagccccttttgctcagtaacagagcttaaggtgaataaaaaaggaaaataatgatatggttc<font color="green"><u>AAGAAATCATTACG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAATCATTACG</u></font>aaagcatggctgaaaaactgctagccttaccaagtgcataaaaaacatgaaaattatttattgataagcattagtcataaa<br>agtgtactctatctcaatttaaatactgcttatgtgtggattacacaaacaaccatgtatgcagtagctacttcaaaggactttctttttaatatttaaa<br>aagttagttcactgaatcagagttgttagataagatcttgtcttcgtgagaacagcttttgaaaatattttaatattttattactcagcaaaaatagcca<br>tgaaacactgaggggagatttagtttgggaatggaatgagagaatgcctgctgcggttcattatcatgactccacccattccttacaactctatgatgct<br>ttatg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TYW1B:NM:001145441:10/12	
0	chr7	76476216	76476533	1001568	0	-	pAlu7-76074821; RIP_Alu_chr7_076_02	NA	NA	SINE	Alu	Ya5	cagaaacattaaaagtgaacttcgcaatttccttaaaaaatagttgagactgtggagaaacaaaaattagttggaacttagtgaactgaagaactgaact<br>tcagtgaactgaagaaacaaattccactctgggtagatcgacttcctaatgtcacaagtcaatttagaaattatgtacaagataaatctcttttctctca<br>ttgcaccaatgtatttatcttaatcacaagcatcagtggagacagagactgaaaaataaattgttcactgtctccaagacaaaccccaaataggaaactt<br>gatattctgccgaaagtctatctctggaatatgctttggaaaagccatggtataattatatgtagtattatagagattcttgtgtgtat<font color="green"><u>AAATATTTTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATATTTTCA</u></font>aaagcctttgaaattgtttgtaaatccaaagtttataaatgacttatgaaatccacaaatttgctaaatat<br>gtttctgcatttttgtattatgctctctgatttttctttctatgtggtgtaagtcaaagaaaatgatatacaatatggctagatgggactaaaatctcca<br>aacaaaagaagcatctgtttttctaatttagtttttgaatttatgttggtttcacaattggttacactgcaaacaatgtggttcaaatgacaatgacact<br>gattacaattctactttgcactaagagtgctttttattcaagattgtcaactcccataactaacaataactaagcctttcagcacctctgtaccttgggt<br>attgttttacccaatgtg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	98197798	98197799	1001569	0	-	pAlu7-97795382; RIP_Alu_chr7_097_01	NA	NA	SINE	Alu	Ya5	gcaaatatttcaaaaccttacactgcatcaagatgggacatttcttaaaaattgcttccccaggacaagaagtagtggcccacacctgtaatcccagcac<br>tttgggaggccaaggcaggaggattgcttgaagccaggggttcaagaccagcctgggcaacatagagagaccccatctctaaagaaacaaaaattagcca<br>agtgtggtgacacattacctgtaatcctagctactcaggaggctgaagtgggaggatcgcttgagcccaggagtttgaggctgcagtgattcctgatcat<br>gctactgcactccagcctgggcaacagagcaagaccctgtctcaaaaacaaaacaaacaaacaaaaagcttcctcagacaacatagaaaca<font color="green"><u>GAAAAATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>GGAAACCCCGTCTCTACTTAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAGAGGCG</font><font color="green"><u>GAAAAATAAGG</u></font>gggcctctcactactcttttcagatgtatcttccagactgcggctcccattgtcaggggagtcattttgtttctgta<br>atgcatgtgtcatcttttacttctagatagcgttttggggtagggaaaggagttgggcagaaataaagatgtctaggcgccttttgttctgtgcagacac<br>atgcctgagaacttttcagtgccaaataaaaggagagtctttctggtcacaagaggagtctaataatttagttaagcctacaaagcaagttccttatccg<br>actgtcttttatgataattgctgcagtgtctggccctgatgggagagaaactacagcccagacccaatgtcctaatgacctggggatggcgggcttcaca<br>gagaaaaagacaaa	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	154382281	154382282	1001570	0	-	pAlu7-153697150;1104685097439; RIP_Alu_chr7_153_01	NA;NA	NA;NA	SINE	Alu	Yb7	gtccagtgggtgacactgactgtggccatctcattccttgtcgaggccatcattatgggctgagatacagtggatcacttactcgcagaatatatttttt<br>ggtttgagtaaaaaatagtatcggctgggcgtggtggctcatgcctgtaatttcagcactttgggaggccaaggtgagcggatcacctgaggtcgggagt<br>tcgagaccagcctgaccaacatggagaaaccccgtctctactaaacatacaaaattagccgggtgtggtggcacatgcctgtaatcccagctactcgaga<br>ggctgaggcaggagaatcgtttgaacctgggaggtggaggtttcagtgagccacgactgagccattgcactccagcctgggcaac<font color="green"><u>AAGAGTTAAACTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTTAAACTCCA</u></font>tatcaaacaacagcaacaaaaaaatagtatctaccttattagtaaacaaaggcatattttttagctt<br>agctcttctacttcaaatgcaaacataacacggacctacccgctgctgagaacgcattaaatgttacaatactgagaggttctaaaaagacactagaaat<br>tatgtgtaaggctgtaggagatgtaaaagcataaaaaaataagtttcagaagaccaggttgtaatttttgaataataaaaaatagatttcgatgtacagg<br>ttggtttcgcatcatctctaccccaaggtgctttcttgggattgaaacggctagagatgctcccctgggccattctgccaaacaagtgaccatccctgct<br>atcactgcagggtcatct	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:DPP6:NM:001936:5/26	
0	chr7	154858220	154858221	1001571	0	-	pAlu7-154173091; RIP_Alu_chr7_154_02	NA	NA	SINE	Alu	Y	aagacaagacaagcaagaaaagaagtctcaagtttgttagagtcctctgtaaaatacgtgtgctccaagatgtgagaaataattttgtctttgaagaatc<br>ggaccccaacaacgtcattgatgatgttagggcttcagtggcctggagtgtaacagggtattcctttcattataaaaatatacgtattgcatctggtacc<br>tcccccgctggaaaggaaacctaatacttggtcagcactttgaatgccagaggcagctgctctgattcacatcctggtgatgtggaaaggctgccaggtt<br>cggttggggctaagagcaggaaatggctctagcagaagtcctggctgcagtgaaagcagcccaactgcttgggctttatgatttgca<font color="green"><u>AAGCTTATGTTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGCTTATGTTAC</u></font>taggagtacctgtaatgggaaaaaactccatgaggattttatgataaacaccagcaaaagagtcacagtatagaccctga<br>gggttctggaggaaagtcactccgtctacaacaggaaacattacactgttggaaaagcagtttgtgtgagccagggctctggcagaaatagagcatctga<br>gcatgagacattaagtgacactggaacaaaatataaccatcaagatgtggaattttgcagacccacctacaagattgggtgggctcagcagcaaaacagc<br>ataaaacagaagtggtgcagagcagagctggagggtgcaagccagctccacaagaggtggcccagaccaccctgctgtctgtcatcactgtacaagcacc<br>tacccct	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	64636823	64637119	1001572	0	-	pAlu7-64545854; RIP_Alu_chr7_064_02	NA	NA	SINE	Alu	Ya4	tgaagatatgtcggccaggcatgtcacgcctgtaatcccagcactttgagaggccaaggcaggaggatcacttgagcccaggagttcaacaccagcctgg<br>gcaacatagtgagaccccatctctataaaaaaagttaattaaaaataaataaataatatgtcacagattccccatgggtacagagcagagaaaaggaatc<br>tactatactatattttaaaaaagactgatcctcagcatctgcacatgtataattgggtccagacttagctacctattaggtttgtacttagtactaaaga<br>cacaaagatgaacaaaagcaagactatcccccaggcttacaaataagaacagttaattgcattacagagtgatgactgttgccatg<font color="green"><u>GAAAAGCACAGGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCGCCCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>GAA<br>AAGCACAGGGA</u></font>atgtaagaaaatgcatatgaagaaatatagcccaatcaatgggatcagaggtggctttctgtaatacgtgatccctaaaaacaataact<br>aaaagagctgctaagccaaaagaaagaaaaaggcctttctagaagaaaagctgcatgcacaaagtcccaaaaaggagagagaagatggataaattagaag<br>actagaagtatgtgaggcactacactagagtgaacagccagcgaaataaggctccatttcattcccagcaatgcacccctaaaacccaaattttcccaga<br>attgtataaatgtgataaaattagaaagctgtcatacctgatacctggttatggtatactcactttttaaacttaagttaatttgattacatcttaa	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:INTS4L1:NR:027393:4/14	
0	chr7	129157178	129157179	1001573	0	+	pAlu7-128696390; RIP_Alu_chr7_128_01	NA	NA	SINE	Alu	Sx	ctgacctcgtgatccgcccacctcagcctcccaaagtgctgcgattacaggcgtgagccaccgcgcccagccagtgccacatacttttaaacaactagat<br>ctggaaagaactcactatctcgagaacagcaccaatccatgcaggatccatccccatgacccaaacacctccaccaggccgcacctccaacactggggat<br>tacaattccacatgagatttgggcagggacaaatataagcagtgataggtacgtccacatacaggtcatgagggctacctggaggaggcaacagctgaag<br>tgaaggccttgctgtgaagctatgggggctttttatgaggaaggctctatgcaagggtgaggatggatatggggcttgatggtt<font color="green"><u>AGAAAGTGGGAGAGAA<br></u></font><font color="red">GGCCAGGTGCAGTGGCTCACACCTGTATTCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTCCAGACCAGCCTGGCTAACAT<br>GGTGAAACCCCATCTCTACTAAAAATAAAAAAATTAGCCAGGCATGGTGGCGTACACCTGTAATCCCAGCTACTCAGGAGGCCGAGGCAGAAGAATTGCT<br>TGTACCTGGGAGGTAGATGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGCGACAGGAGGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAAGTGGGAGAGAAGG</u></font>gggaacggtgactgcaggaatagaaaaaatgtccacagaggaggaaggaggacatggcagtcacatgtggatggggaa<br>ttttccattacaaatctgatgatagaatccaaagagacagtgacaagtgtcagcgagggtgggaaaaattgcaaccctcatgcgttgctggtggggatat<br>aaaatggagccgctgtggaagacagtttggcagccactcagaacgtaagtagagttaccatacagctcagcaattctactcccaggtacacgcccagaga<br>actgaacacacggtcacacaacatcttgtacataagccaagtacagcggtgctcgcctatagtcccagctactcaggaggctgaggccagagggtatctt<br>gaaccc	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	25172661	25172662	1001574	0	-	pAlu8-24993188; RIP_Alu_chr8_025_01	NA	NA	SINE	Alu	Ya5	agtgcttgagctcctactctgcagcaggcgtgtgctgggtgtctgggtggcgatggtgagccactcaccagccttgccccaactcaggttacagtctggt<br>gccagagagaagcaccagtcaaataatctgcacaagtaaacccaccattagcaatggaggaatgtgccaggctctgtgaatgcacaataccaggtcctga<br>cctcgtctgcagggtatgggaatctttcctttcagctgttagcacagtcagggagagtggcctgtgcaaaggcccagaggtaggagacaacctgactgac<br>atcctcacagtgagggggtgtctggtgtgagatgaggctgtagagacagatataagtcagatccccctgaggccggtgggcaaatt<font color="green"><u>AAGAATTTTTATAT<br></u></font><font color="red">GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG<br>CGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAATTTTTATAT</u></font>ttaccctcaacataaatgaaagtcagtaagatgttttcagcgagggaggagcgggatgagatcaggtgtgcttacagaatagaac<br>attcaggatgcagtaaggagaagagaaaatgagcaaagaaagaacagaaacatgaaaaccaggtaggaagctacggcagttgtccagggaagaggtcatc<br>gtagctccaatttgggtagtgacaatgcagatggagagaagggagagagagacttgagagtcctttcaaaggtaatgctgacaggtcttatctactaatt<br>tatgtgagttataaaggaaaaggagatatcaagggtgactttctggcttcttgcttgtgcagtggatggataggtgggtggatggatgggtgggtgggtg<br>g	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DOCK5:NM:024940:13/52	
0	chr8	16102823	16102824	1001575	0	-	pAlu8-15877999;1104685163697; RIP_Alu_chr8_016_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	aatcttctctgctttcttttcttagtttattctcttacatttcaatatttttaataaaaataaattttatttacaaaggtaaaggataattactggtgaa<br>aattcatcctacaaataaaagaagaaagaagaaagttaagatttattttaaacctacaatgcaaggcaaatattataagcatttgggtcaacataatttc<br>agatattagctacatatccatctacctgtatctctacctacgtatctacaaaaatcgtaatggttatgaaccctcttttaaagtaacaactaggcttttt<br>tcactaactatatgccaagaaaatgttacatgccaataagtgtacgcatacatacaacacatgtacatatgcttatatattttt<font color="green"><u>AAGAATCCATAATATG<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCCATAATATG</u></font>tatacacacatatatgtaaggata<br>tatatgaacacagagacatatattgcctttttaatgactggatattttatttttattatgttaactaaaatatgtaataattatgtaataatgtatataa<br>tagagtttaataataaatcatctctatgcccaaaacactcctaaaaaataaattactatttatgatgccccaaattgggaatcaaccaaaatgttcttca<br>gcaggtgaatggataaacaaactgtggtcactcatacaatggaatattatttcgtgataaaaaccaatgagctatcaagtcacaaaaagacatgggggaa<br>ctgtaaatgcatattgctaagtaagaaaagccaatctgtctacacactgtattgttttaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	6044978	6044979	1001576	0	+	pAlu8-6195558;1104685046690; RIP_Alu_chr8_006_01	NA;NA	NA;NA	SINE	Alu	Y	caatatttgtgaagagacatttcatttaattacattagacaaggagatggtctcgacttggaaatgctcaggaaataaacttttcaatgtaatttcccac<br>tggagagtatacacataataaagtcattgacttcagctagcactaatcagtattaatgccttcaatcattgccatcaatagctatcttggagaatcacaa<br>aatttaactgccttcctacagtggaggcataaacggatacgggtccccttgtaggaagaggaccaggagctgcaccaatggctgtgtttcctcctcgatg<br>accttcccatgaatgaatgtgtcccccttggatactgccatccactcaccagccgtccattagttcttcagaagtattgatc<font color="green"><u>AATATGCAACACTTAAGG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AATATGCAACACTTAAGG</u></font>tttcaaacaacacttaaatgcaatttttgaaggtatctcaaggtgggccttggtaaatggtaacttttcaaaggttgcctga<br>agccataacaacagggggagcacagcatgctgcctttccctgtcaaaggacatgagccttattatctcagcaatatcccaaagcacctcacaagtctggg<br>aaaaaaatttcaaaacagcaagcaattttcagccccaaactgcacaaattaaagcatttctctctgctctgaacttattcagtctcagtacagatatgtt<br>aaatgaactgacataagaagtaaaatgaaaattaaattaaatttgccttttccctgcagggaacactacccataaataaaatgctgcgaacccaaccgtt<br>	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	75375347	75375348	1001577	0	+	pAlu8-75098532;1104685425738; RIP_Alu_chr8_075_01	NA;NA	NA;NA	SINE	Alu	Ya3	tttgacacagaaaccactaagaagagggtaaaacaaaaattgggaatgagaatcctagaattttttttatacttgaatgatttcaaaagatatgccagca<br>tttaaacaagcctttaagaatctagtagattagaaagcatttgagtgatgaagtgacaaggacgtaagttgaaatcaatacaaatacaaaacctgatgaa<br>ttgtttcattcagaagagatcaaattattaaaagatcaagtgcaaagggaaaagtttatagatattaatgtgttctgataaactaagaaccagacagtac<br>atgaaagcttagctttagggtggatgacattgcaagtgatatgtaattaaggcaataagttacggcaaatgagtaaataacatttct<font color="green"><u>AAGATTGATCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAGA</font><font color="green"><u>AAGATTGATCCTC</u></font>agttgtgggctgaaacaaattgatgtagcacagtaagcatgacttcaagaatattttaggataggtgtggtggcttatgc<br>ctataatcccagcactttgggaggccaaggtagaaggattgcttgagcctaggaatttgagaccagccttaggaacatagggagaccccatatttattaa<br>aaaaataaaaaaataaattagcgggatgtggtattgtgcacttgtggtcccagctactcagaagggtgatatatgaggattgctgcttgagcccgggagt<br>tctaggctgcggtgagctatgattacaccactgcactccagcttgggtgacagagcgagaccctgtctcaaaaaaaaaacaaaaatagtattttaacaga<br>ggtgcta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	124680184	124680185	1001578	0	+	pAlu8-124348981;1104685370895; RIP_Alu_chr8_124_01	NA;NA	NA;NA	SINE	Alu	Ya5	agaatttgttaccaaaacaccaggagttttgtctaagttctgttgcttgacacccagaaagccaatcactgagaagacgactgttgccagggaagaaggc<br>tttaatcgggtgctgcagctgaggaggtgggagatagagtcttgagtccatctactcaagcacctaaaatcaggggtttgtatagcacggcagaaatgta<br>accatgtatgggaaaacagaaattaggaaggagtgaggaagaggagttggtcaacaggaagcaggtggtcagatagggaatcatgatgggtgagggtctg<br>gtgtctctttgcccagatgtgatggtcttataatttcagctcctcgatattatcttgggagagggggtgatgactgggttcctgag<font color="green"><u>AAAAGAACTCAGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGAACTCAGGT</u></font>aagacaactgtaactttctcaaattttaagacttcgggatcaatttttatgtttattcaaaagaaaccataaacat<br>cagttctagggagacaattgggctggtttcaaattgctgtgtgtgttgtgactggaaggatgcataagacatggttcttggcctcacagagctcctggtc<br>tcattagggatatggatatagagaatgacaaagaaaaatacggtaagtgctgtgatgggattgtgtgaaacgaacacacagaaggggtgacactaactgc<br>acaggagagggggcaggcaagtcttgccttctaagagatggtgaggcttgagctgccactgaaaggaaatgtggaagtcaagggataaatttggctggag<br>aaagggagga	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	125889971	125889972	1001579	0	-	pAlu8-125558756;1104685371220; RIP_Alu_chr8_125_01	NA;NA	NA;NA	SINE	Alu	Ya5a2	ttgatcagtctggctaaccttttactcttctacctttttctaggcattaagaagcatacattagagatttgtcagtctcattttctttcttctcatcctg<br>ctagcagggccttagagacaataacagcaatcacacttatgcagctttcaccatcaaccatgccctggaccagctgctctacgtgtagtatctcatttaa<br>ttctccccaataaggtagctaagtatgattatgatcccattttatggctgaggaaaccaagattcgggaagctcaagtggttttcccaaagtcacagaac<br>tggtgagacatggagctgctgtgatccgtgtacatttcattgcttcctttcctcttaaatgattctctcaagctatgaaatgtctat<font color="green"><u>AAGATCAGAAGAA<br></u></font><font color="red">CAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCGGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAGAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATCAGAAGAA</u></font>atggaaggagaagca<br>agaggctgaataatcctcaaaagaagataattaactcttagatggatgagaactatctgcatgtttttatactttttaaactctctctggaagcatctca<br>ccaagagtgtcattagagtttattcattatggagtcttctaattcattagatttcagttcatttttgctgacatagatttcacatccccagtgtttaaaa<br>caccaggcgaggatccagaagtgagaatgctgtggacataaagatgaacactttaaatatcagtctgtacagaactcccacatggtggggggccaagact<br>attcatatcccaccactagacaaagaaatcctagtggggccaggatagtgctctgagagcacaccgcagaaa	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr8	139325980	139325981	1001580	0	+	pAlu8-139010376;1104685071563; RIP_Alu_chr8_139_01	NA;NA	NA;NA	SINE	Alu	Y	ggccaggctggtctcgaactcctgacctcaggcaatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcctaaaa<br>catattctaaacacagaattaagcaaagagtttttagacttggtacagagaacatgaaccataaaagaaaaacataataaattttgtttgtttgtttgct<br>tgtttgtttattttgagagatgaggtcttgctatgtcgcccaggctggcatcaaactcctggtctcaagtgatcctcccacttcggctccccaaagtgct<br>gggattacaggtgtgaggcactgtaccccgcagataaattttagttcattaaaactaaacacttttgtgctatgaaagacactgtt<font color="green"><u>AAGATACAAGCTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG<br>TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATACAAGCTAC</u></font>aatgtgggaaaaaatagttgcaaatcacatgcagtggacctcagtatctgtgtattctgtatttgggaatttgtttactcaaaaaaa<br>tttgttttagccccaaatgcaacactcacagcacctttgtggtcattcacagacatgaacacagtggtaaaaagtttgaatcttctgacactcgggtgcc<br>caactgaggttaagcaatactaaaaacaagtatcccttttgcaatttatttagtctcacatatttgtgtactctttgctttttgttggtgttccactgtt<br>tgagatggaccccaggcatagtactaaagggctgtctagtgttcctaagggcaggaatgctgtgatgtgccccatggagaaaggatgtgtgttagatga	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:FAM135B:NM:015912:2/20	
0	chr9	2351304	2351305	1001581	0	+	pAlu9-2341303;1104685690672; RIP_Alu_chr9_002_01	NA;NA	NA;NA	SINE	Alu	Y	gttttaggcttcagaattattagaaacattttttcttatgggtcctacatatttttattaatgtaattcttttttacattttatttatttataaaattat<br>ttatgtaattttattaatgtaatgtagtcttggttgctatattgatgtggtcttttcttacattatatcatctatgtggttattgcttatatgtacatat<br>gtatgggtgtgtatgaaagctaatgtttttatctattatttctatacccctaatacctttctgaattctcttactgattgtaatagcttttcagttagtt<br>ttcttgttttccaagtatgtagtcatagcctctgtaaataatagtattttttcctttctcttttctaactcttttcataactct<font color="green"><u>AAGAATTATGATTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCTCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATTATGATTTCT</u></font>ttctcttccccaattttgttggctatgacttactagtacatgtcaagttctatttctgactataatgggactattttagtgcttc<br>ccattaaacataatgctagttttggggttatgactgaattacttgattttgctatagatttgatttgtctaacattattttgttgcaatttaaaaaaatt<br>aagaatgaatattgtattttgtctggtgacgtcatttaatacatttccccccatgcttatataatctcaaacacagggggtttgtcattgacttatagaa<br>attgttttgtgttatatacacctacgtttatcttattgctcattatataatacttcgtggaattttttttttccaaattagatttagctcattgtttta	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr9	104209997	104209998	1001582	0	+	pAlu9-97667445;1104685433208; RIP_Alu_chr9_101_01	NA;NA	NA;NA	SINE	Alu	Yb9	attactttactaaacgtataaatccaatttataccacaagttttggtaactctggttttgccatttcttcacttttattatatttactggaaacttaaaa<br>gtatggaagtagcctgtgtgtcccttggcctttgaaaggccctgtctttcacttatcttgattgtttatatacatatgtatcttatatatgaatcacaca<br>cacacttactatatatatatatatatatatatatgcacacaaatatctttattccacagcaaaggaaaataaacttggccttaagttccctaatgattta<br>gcaaacaatcactgcaaagaaatattaggggaggattgcttgaagaagatgcagtccatctagtttgaatgatctcagaggtatc<font color="green"><u>AAGAATGAGAACCTT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAG<br>CTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AATGAGAACCTT</u></font>atatgcttgtgcctacacctttcctactggaatcattttggaggaatagcacttgtgtgcttttggtatgaaatattaggggaggatt<br>gcttgaagaagatgcagtccatctagtttgaatgatctcagaggtatcaagaatgagaaccttatatgcttgtgcctacacctttcctactggaatcatt<br>ttggaggaatagcacttgcgtgcttttggtatgacaccatctgatttgtctgaaggtcatgatcagaaaaaagtctgttcaacttacccttgggctgttg<br>tccagtaatctcttcataggctatgctctttatgaagtgctcagagatccccgtctgattagaaaattaagaatagttgtgctattcttaacactgt	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr9	103702900	103702901	1001583	0	-	pAlu9-97160342;1104685433313; RIP_Alu_chr9_100_01	NA;NA	NA;NA	SINE	Alu	Yd2	agaataaatgaatttatactttaaaagagaaaggaaaggaaaaataaattttccatcttttcttcatttatgcaagctttgattggatttcaaaggcctc<br>cacttaaaaaaatcattgactccctgggtttaagggattattgtctgtggaatttttaattactttttgaagcaaaaagataattggattgaggatttga<br>ccaataaaagagaaactgatttgatttttaatttttgggattttaattaaaatctatagtccctatctagttagtatctgatacattttggctcaaaggg<br>tcactcttcctcccatgtataaagtcagtcacatgagcacatatacctctttagacttttctatactatatagtaaatatgtccatta<font color="green"><u>AATGAAGAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGGTGAAACCCCGTCTCTACT<br>AAAAATACAAAAAATTACCCGGGCCCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC<br>TTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AATGAAGAAATA</u></font>aatacatgacagcttaaggtttggaagctgtgagtggcagtgtttaaatgtctggactctcaagtcaaatgtcataattcac<br>atgccatgctcatttcaatcactctttgtcactgtcaaatagattttactgtgcagggccctaaactatatgggcactacagggacaaaaagataccagt<br>ctacataaaaccacactgttgtctttccaagtgtacctgtatctatccttctatagcctgcctaattctttatttaaattttaccattatttatatttat<br>gtaaatattatttatattcctgttttaagcctcttcagatacttaacaaacacacaccaaaccaaccaacctacaaggtatttatgtttctcaagatttt<br>aaagac	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr9	96371386	96371387	1001584	0	-	pAlu9-89670507; RIP_Alu_chr9_093_02	NA	NA	SINE	Alu	Yc1	cagacaaacaacagttcagaaaatttgtcaccagtaaatctgccttgcaagaaatgttaaaagaacttcagagagaaggaaaatgatatagatcagaaat<br>tagaatctgtagaaagaaagggagagtattagggaagtaacaagtgaggataaaataaaaacttttttcttattcttgatctagcagacaagtttgttca<br>ccaataataatagcaacaatgtacttcatgactacttcatgactacagtttatgagtaagtgaataacaataatatttcaaggtatgggagggaacaatt<br>aggaatactatttcttgctctacccatagagtgctaagtatttgaaagaggacttggattagtcataaacgtatatcgcacattttaa<font color="green"><u>AACAACCACTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AACCACCCACTAA</u></font>aaaaaaagttttttaaaaaagcgttattgatatgctgagaggagaaaaaaatgggatcacatcgaatgctcaattaaagcc<br>agagaaggcataaaaaagattagacaaaaagaaaaaaacaaaacaaataacaggagcaataaacaggaaacagtaacaaatacggtatatattaatccaa<br>ctacacaaataaccactttaaatatcaatggtcctaaatataacaactaaaaagcagacactgttagagtggattaaaaaacaaataaataaaatttaaa<br>aaaacaaggaccaactatgttgtctaacagaaaccaacttaaaatataaagacacagattaaaagtaaaaggatgaaacaacactatgcccacaaattca<br>atagcct	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PHF2:NM:005392:1/22	
0	chr9	97314258	97314259	1001585	0	+	pAlu9-90613390;1104685436380; RIP_Alu_chr9_094_02	NA;NA	NA;NA	SINE	Alu	Ya5	tattaaacctataaataaagggctatatgaggttaaacgtattcaaatttctatatggtttaaaacattgaggaaatgtattgacaaacaaacttaagaa<br>actgcaaccaatctactctggacaaaaatttagatactatctcttcaaaataagctatctagtggtatttacacacattcttccatatatcaacagtatt<br>tcacatgctcataaccttaaaaataactgaaaagtgtcagaattataggccttacacatttctgtgggcttgaaaaatgatacaatatagattgtcttta<br>aggcagctaagaaaatgcataaacttctagagtaatcagtttaaaaaaaaaaagagttcataccaaaggtagtaatactacgatt<font color="green"><u>AAAAGAGAGCTCAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAGAGAGCTCAAC</u></font>actgcaggttcttaaaggcaaaagttaataaagccttgtttttggtagtgaatctctgccttgcaaaattatacacatgatt<br>ctccccccttcatttgcctcttgcaaaaatgtggtgatgaaccaggtttgctcatgcagatgatgatactccttcaaaatggttgcagagaaataaaatg<br>aagggaatatggttcacttaataatctcataaattagaacttattaccccagtgactcttacatagctccagacaaatatttgagagagatgaaatggcc<br>ttttgctaccaatatcttatgtgatgcttcactttttggttccttggataactacttacaactcattagcccatttatgccagaggttgcaattttttga<br>att	Other;Venter	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chrX	2731992	2731993	1001586	0	-	pAluX-2262053; RIP_Alu_chrX_002_01	NA	NA	SINE	Alu	Yc1	aaaaaaaagtctattaaacaaagtaaaagaaaaccaagatccaactctatgttgttacaagagacgcttgctatatatttagagcaagaatatttagcag<br>aaggaagattagaacagaaaaaaatacagcagaaatgaagttgcacatcttaaatatatacaatgtttgtttattatgctttaaaaaaatctagaagaat<br>gaaaaatctatttaaaaaaaaagaaaaccaagatccaactatgtgctgtctatatgacatttgccttactttcagcagaaggaaatagattagaaaaaat<br>aaattatgcaaaaatgaagctgtgcatcttaaatatatacaatgtttatttgtcaattataccttaataaagctggaaaaattaaaaat<font color="green"><u>AGAAAATATTT<br></u></font><font color="red">GGGCCAGGCGCGGTGGCTCACACCTGTAGTCCCAACACTTTGGGAGGCCAAGGCAGGCAGATCACAAGGTCAGGGGATCGAGACCATCCTGGCTAACACA<br>GTGAAATGCTGTCTCTACTAAAAATACAAAAAATCAGCCAGGCATGGTAGTGGGTGTCTGTAGTCCCAGCTACACAGGAGGCTGAGGTAGGAGAATGGCG<br>TAAACCCGGGAGGCAGAGCTGGCAGTGAGCCGAGATCCAGCCACTGCACTCTAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAGA<br>AAGAA</font><font color="green"><u>AGAAAATATTT</u></font>aaaaattgttaaaatcatatctggaaataaatattagttttcaaaacattgtttttttacattttgccatttgttaaggatttt<br>gatgatcttaaatgaattgagtaactttctttttggttaaaactaatatttgtaggaaattcttttttagaatatggccttgttggtctttataacttct<br>gaagtgatgttgtcatttgctccactttataaaataaaagcaaagtatgattcttaaaagtccacatcaagtgacagacatctgcttctatctgtgcagc<br>tctgttactacaactctttctctacaaagtgtgcaagcttcagtgtatggcctcagcatgtacacagttccacaggttgtgcactgcatcacatcaccgt<br>ggata	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:XG:NM:175569:9/10	
0	chrX	2986938	2986949	1001587	0	+	pAluX-2517000; RIP_Alu_chrX_002_02	NA	NA	SINE	Alu	Y	gcaacctccaactcccgggctaaagcgatcctccagactcagtttccagagtagctgggaccccaggtgcttatcaccagcctagctaattttgtatttt<br>tattttttgtagagataggttctcattatgttgcccaggctggtcttgaactcctgggctcaaggaatcctcctgcctctgcctcccaaagtgctgggat<br>tacaggtgtgagccaccattgtgcccagccatatatatgattttaaaatatggtaaaaatggggtgacaaaaaaattcaactaactttgcatagatgaaa<br>agcatttctataactttggggatttggcccacagtcctgagcatgtagcttttgcctgcaaaacattcttaatcttcaaggagatgttt<font color="green"><u>GAAAAATTGTA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCATGCCTATAATCTCTGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGTGGTGGGTACCTGTAGTCCCAGCTACTTGGGAGGCCGAGGCAAGAGAATGGC<br>ATGAACCTGGGAGGCAGAGCTGGCAGTGAACCAAGATCGCATGACTGTGCTCCAGTCTGGCTGACAGAGCGAGACTCCATCTCAAAAAAAA</font><font color="green"><u>GAAAAATTG<br>TA</u></font>atcatctgtggctatcattgtctcagagtatttacaaaggactctgagagacaatagggatgaactcctgtttgtgtttttcctctcagaggagatat<br>ttgaagtgagttttgaaataagtatagagacgagatagggattgaatcaataatcccatgtccaatattcattacctgataactgagtagggatatgctg<br>agaaaagtgtcatgtgtttccttaagaaaatatgacctcagccaggactgagcaaaactatgaactggacgcagtggtcctcaaattccatgtttctttc<br>ttttcctcaattcagttctttcctcagcttccacttttcctttacttggtaattccttattatattaccttttgcttgtctttcctttctc	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ARSF:NM:004042:2/11	
0	chrX	2496937	2496938	1001588	0	-	pAluX-2026967; RIP_Alu_chrX_002_03	NA	NA	SINE	Alu	Sx	acacatctgtaatcccagctactcaggaagctgaggcagaaaaatcgcttgaaccctggaggtgggggttgcagtgagccgagatcgcgccactgcaccc<br>agcctgggcgacggagtgagacgccatctcaaaaaagaaaaaaaagaacaggctgcctcagaagtggtcagaggtgtttgtttgccttgttgtgtgcact<br>tccccaagggaagtgtagcggggaggagagacgaatacgcacgtgtttgggtcataggactttacactggataagagtattgacataccttccaaattta<br>tatcactgaaaaaaaaaaga<font color="green"><u>TTCTTTAGCAGAAGTAAACATTTTGGAATTCAAGATAAGTGACATGGGGGAAAAAGAATTGGGTTGAAAATCTCACTCTA<br></u></font><font color="red">GGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCACTTTGGGAGGCCGATGCGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCCGGCCACCAT<br>GGCGAAACCCCGTCTCTACTAAAAATACAAAATTTGCTGGACATGGTGACACATGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATTACTT<br>GAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGTGACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAGAA<br>AAGAAAACAAGG</font><font color="green"><u>TTCTTTAGCAGAAGTAAACATTTTGGAATTCAAGATAAGTGAC</u></font>gttttcaaagctgttctcagttaatgttgttttcaaagcctgagg<br>ttgtggcttaggttattgagacgcttcttaaccattcttctcctccttcaccctaaaattaagatccttttatatctcctcttctcaggctgtgttccac<br>agatgttcatattggaacttgcctgcattgcagatgtctgtaaaaaaaaagcggggggagcggagaggcaggctgaaaggtagtagagaattccaaggtg<br>ccgacagagaaggaaagaccagcctgggtcttacatattagctctgtgatactccaagctccacagtgttaagct	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	149111838	149112134	1001589	0	-	pAluX-146513150; RIP_Alu_chrX_148_01	NA	NA	SINE	Alu	Sp	ctcctacatcgcacatccgcacgaccctgtgagagtcagggcagaaaaggaaagctaaaaggcggacaaatgagtgcaagagagcaaaaaagggaaccct<br>ccctaatctaatgggcagggcactggacgcatgcgagcacctcctccttgggggagaggtcacagccttcagatggaggggcagtgggacactccatgat<br>ctctggggttacttacaatttggagtgcttaggtgaatactgagtccaaaacagccctgcaaagacacagaagaacaagcccctgtgcggacgaggtctc<br>tgaaatacaaaaagccaacatggggttagaggcagaattcagaaagagctcctacaactccataccaacaaggcaaatgactcaat<font color="green"><u>AGAAAAATGGGCAA<br></u></font><font color="red">GCCAGGCACGGTGGCTTACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCGAAGTTCGAGACCAGTCCAACCAACAAGG<br>AGAAACCCCATCTCTACTAAAAATACAAACTTAGCCAGGCATGGTGGCGCATACCTGTAATCCCAGCACTCAGGAGGCTGAGGAAGGAGAATCGCTTGAG<br>CCCAGAAGGCAGAGGTAGTGGTGAGCCGAGATTGCACCAGCCTGGGCAACAAGAGCAAAACTCCGTCTAAAAAAAAATGAAAAAGAAAGAAAGAAAA</font><font color="green"><u>AGA<br>AAAATGGGCAA</u></font>aagccatttcctagacgaggaaagcaggctgaccaaaaagcatctgaagggaaaccatgaatcagggtcaaagcggtcccagactggcc<br>gtgccccggaacactaggcaggatcaaacgtgaaccatctccagagaagggcaacttcctcctgggcctcagagtcaaaaaagcacagcgaggagaggtg<br>gctgcactctggaaagtgtcagtggggaggcaaaggaagaggaaggcggtgacaggctcagaaaacaggaggagttgcacggaaattagtctgagcaaaa<br>agaatgcttctctaggggagcatgtgggcagaagagaaggactgcacagccggggatgctgagcacggagaggcaaggtgatggcaaattcgcaagg	UCSC	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC100272228:NR:027456:4/12	
0	chrX	91141324	91141325	1001590	0	+	pAluX-89177051; RIP_Alu_chrX_090_02	NA	NA	SINE	Alu	Y	gagatttaacagtatttaaatttgggccatagatgaaaatgaattctacttttgactagtaactattcttgatccatcctttgcttttgtttgagagaat<br>attatctctatttgagaacaacatggaaggcattgaaactagttttccacaaaggccagaggacaaaaatatttatttccttagttgattccttatcagt<br>tgacctggtcgcacctttaatttaattgatattattattacgtttgccttgcaagttctcagatatctccaaccttttgtgttgtcattcatcgactacg<br>ggaatattctcaatgaaatgtccttgatggtctctctggttcttattctagtcatgaaaaggaaaagacaaaaagatagcaaatcttaa<font color="green"><u>AACTAGTCATC<br></u></font><font color="red">GGCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGAGGCTGTCTCAAAAAAAAAAAAAAAACAA<br>AAAAA</font><font color="green"><u>AACTAGTCATC</u></font>atagataaataaaaggaacttttagtgaactttgtccattaaattataagtagcttacctgatgagctacagtgtactgtatac<br>tttctcccctgcaagcactcaaagaaatattatttgatcaaaatctatagtgcataaattaaacaaaaaatactgaaatatattctcattttattttaat<br>tatgaaagtttatttttaatgatatgatatttaagctattatatttctcacttttttattttcaatgatttaaatgtaaaaattataaaacaattttaat<br>ctcattcattaattcatctttcatgtataagtctgttttctctgttgaccaccctgtccacattatgaatgaaaatatgtatatacttggccgggcgtgg<br>tggct	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PCDH11X:NM:001168362:2/5	
0	chrX	89420515	89420516	1001591	0	-	pAluX-87456226; RIP_Alu_chrX_089_01	NA	NA	SINE	Alu	Y	agtttgaaattttacatttatgtctttaatccatcttgagttgattatgtgtatggtgtaaggaagtggtttagctttaatcttctacatatagctagcc<br>atttatcccagtaccatttactgaacagggagtctttttcccattgcttgtttttgtcagctttgtcaaagatcagatggtcatagaagggtgatcttat<br>tttggagctctttattctgttccattggcctatatgcctgtttttgaaccagaaccatgctgttttggttactgtagcctcgtagtatagtctgaagttg<br>ggtaacatgaagcctccagctttgctacttttgcttaggattgccttggctatttgggttcttttttggttccacatgaattttaa<font color="green"><u>AATAGCTTTTTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGGCCATCCTGGCTAACACGG<br>TGAAACCCTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATAGCTTTTTCCAG</u></font>gttctgtgaagaatgtctttggtagtttgataggaatagcactgaatatgtaaattgcattgggcagtaaagccattttattgg<br>tattgattctttctatccatgagcatgagatatttttccatttgttttgtgtctcctctgatttctttgaacagtgttttgtaattctcatcgtagatac<br>cattcattttcctcgttagctgtatttgtaggcattttttgtgtgtgtggcaattgtgaatgggattgcctttctgatttggctctcagtttcactattg<br>ttggtgaatagaaatgctagtaatttttatacattgaatttgtatacagcaactttgctaaacttgtttatcagctgaaagagcttttggcccaagactg<br>tg	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	89565136	89565137	1001592	0	+	pAluX-87600864; RIP_Alu_chrX_089_02	NA	NA	SINE	Alu	Y	cctatcctcagagatccactaggcaatgccccaagtggggactctgtgtaggggctcccactccacatctcccctctgcactgccctagtagaggttctc<br>tatgagggccctttctctacagcagacttctgtctggacagtcaggtgtttccttacatcttctgaaatctaggcagacattcccaagcctcaacttgac<br>ttctgcacacccaaaggcccaacaccatgtggaaaccaccaacacttggggcttgcactctctgaaacaatggtacaaactgtatcttggccccttttag<br>ccacagctggagctggaatggctgggatgcaggataccatgtcctgaggctgcatagagcaactgggccctggccctggctcacaa<font color="green"><u>AATTATTTTTTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA<br>AAAAAATAAAAAAATAAATAAATAA</font><font color="green"><u>AATTATTTTTTCCT</u></font>cctaggcctccatgcttgtgatgggacaacctatcatgaaggtctctgaaattccctggag<br>acattcttccccactgtcttagctattaacattccactcctgtttacttatgcaaatttctgcagctggcttgaatttctctccaccaaatttttttttt<br>ttttcttttttaccacatggtcaggctgcaaattttccaatcttttatgctctactttccttttcaatattagttctagtttcagacaatctgttttttc<br>atacatacaagcatacaccttcagaaatagccaggtcacatcttgaatgctttgctgattagaaatttcttccacacgataccttaaatcatctcactga<br>agttcaaaattccacagatctctag	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	90283234	90283235	1001593	0	-	pAluX-88318951; RIP_Alu_chrX_090_03	NA	NA	SINE	Alu	Yc2	ttcttgcccttgccccaacatgtgtctggcaacatggcctccccaacatatccccatgtgtagaacatcatggcgcactgcatttgcataataaaaggct<br>agggcggaagggccagctttttcatgggctatgtgaatgacatgcctggtcaaaccaatcccctgagccctatgcaaatcagacaccacctcctccagcc<br>tactcatataagtagccacttttctgttgcacatggggtctcctctcttggctttgggaacccctccctctgtctgtacaggggagcttcttccttcttt<br>cttctcccttctttcttgcctattaaactctccactccttaaaatcactccacaggtgtccatgtcattttacccaattcccacgaaac<font color="green"><u>AAGAGCCCTGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGCCCTGG</u></font>tgttcctccactcatcggagctgtatcaatagcaacgtaccaaagagttggatggattaaacaagataaatttatttc<br>tcacagttctagagggatagaagtataagatcaaggaatctacaagtttactttttactaagtcctcactccttggctgacaatggctgtcatacttgct<br>gtgtcnnnnnnnnnnnnnnnnnnnnccacctttgatatgcaaatgctggccattagaaactgggtctgcccaaacatggcaattcctgccgccttcttgc<br>ccttgccccaacatgtgtctggcaacacggcctccccaacatatccccatgtgtagaacatcatggcgcactgcatttgcataataaaaggctagggtgg<br>gagggccagtt	Other	<UL><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	82912094	82912095	1001594	0	+	PV92; RIP_Alu_chr16_081_03	AACTGGGAAAATTTGAAGAAAAGT	TGAGTTCTCAACTCCTGTGTGTTAG	SINE	Alu	Ya5	ggctgtggaatcagcctcagaagccagattgtctgagccccaaggaaacgtcaaacccctctccctctccagtagcattccccagtctgtgtcacttaga<br>cgaaaaggatctcagggtgggtggcaatgctccttcactgaaatctgcagttatctctacccaaggcttacagtaaattttttgcaaattagaaagccct<br>ttgctctctcagtaaaccctggctttcaagatttttgttttagtaaagtctttagactaaatgttgaatctttcactctctttgctcctaatcatctcta<br>agacagcaaatgcctctagcaaaaaagaggagacgtcaactgggaaaatttgaagagaaagtcacacagatacatttcagtaaggttgtctctgttactt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaggcttacaagaaggaaagaattccctctctaaacacactctaaacacacaggagttgagaacggggagatttattcca<br>gaaccccttctgtgcgttggggcttctggtagcttgcctttcttggtaacgattttctcagagactgggtagattcgagtggagcctggggcatggttgt<br>tggtccaatggcgggggttggggagacacaagcagttggcagggaacttacaaatctccaggaggttattgagaataaaaattcagatattgccatcttt<br>tccatttcaaagcaccaagagtctgtcatcagcaattgtgcctttctaggtgtcacctgaatatctaacattgaggcattgaaagatagatcaggactga<br>ttttactgagcattttcaaa	Other	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID: 11179020</a>.</LI><LI>Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8576959">PMID: 8576959</a>.</LI><LI>Ray, D. A., J. A. Walker, A. Hall, B. Llewellyn, J Ballantyne, A. T. Christian, K. Turtletaub and  M. A. Batzer. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int 153: 117-124, 2005.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	precise insertion position unknown TSD unavailable	55	437	122	NA	intron:CDH13:NM:001257:2/14
0	chr6	104742232	104742538	1001595	0	-	Yb8AC1371; RIP_Alu_chr6_104_02	GCTGGAGGCTGAGAAATCAC	TAGTCTGGATGGGCTCCACT	SINE	Alu	Yb8	tctgtggggatcacagaaagaataatgaaggagtgaagtttggtaatgaatgaatgaatttggtaatgaagaacaattgcatgttctttgtttccctgta<br>tctacatccaagcaatgtgacttcacatctgttctataaagaggtgatctatttccccaccccttggatctggcctagccttatgatttgactaatggag<br>taatagaaaatggaatgtaagatgagacttgagaagttccctcacattgaggcttattattttgctttttggaactcctggggctagcctgctggaggct<br>gagaaatcacatggggagaggtcttatcattcctagatgtcccagctgataccatcatagcccagccagctgacctttaaggtttg<font color="green"><u>AAAGAATCCAGATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAATCCAGATA</u></font>aactcagtggagcccatccagactagaactgactaggagaacccagctcaattttctcatctgcagaatcatgagctaa<br>ggaaatggttgttgttttgaaccactcattttggaggttgtttcttatatatcaaaagcaaattaatgaacacttaacatcttagttaattggagctcag<br>gactgttttgtggagaatgggtaagagtgatgtataagtgtttcagggctgtaacaaagctccacgagctggggggcttaaataaaagaagtcatctcac<br>agttctggaggctaaaaatctgaagtcaagatgttggcagggttggttccttctgacagctgtgagggaagaaatggtttcaggcctctctccttggctt<br>gtagatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	456	135	NA	intergenic
0	chr1	185373107	185373434	1001596	0	+	Yb8AC992; RIP_Alu_chr1_182_02	GTAATGACACAGAAGCGGGG	CTCTGGCCACTCCTTCTCAC	SINE	Alu	Yb8	tatcagacatctaagagatgaatctggagtttaggggagaggggcagggtggggctatagatttgggagtcattagcttatatacctggtatttaaaatg<br>tggagaccagatgagataatctagggagtgagtataaagaaaagtggtccaaagactaagctccttcgtaatgacacagaagcggggaagggaagtgctg<br>gcaagggaagggcatcgtccctttaaatgatatggaatgggggaagggcgtggtccctggctagggctctatcccctggcctgtgcctgcggacctcggc<br>gaggacaggcatttttgttttcctgcccaaatgttgcatttcccaagaccaccctggcctgccaggcccccattctgtgcctataaaaac<font color="green"><u>CCCAAGATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAACAAAACAAAAAAAAA</font><font color="green"><u>CCCAAGATTC</u></font>tagcaggcaaacacacaagcggctggaagtcgagaggatgccgggagcacaccgcaggcact<br>ggcacgccagcaggctatcgaccagcagaatgatgtggagtttggcagggcagtcggaggagagcctgggctgctaagcagacccagggctttctggaaa<br>tgttataaaacaagtgaagtttgtggtatataaattatccctcgagttaacagcctcggccgtttacaaaaaaaccacacacacacacacacacacacac<br>acacacgacggaaaaaggaggcaaagagatggggagtaactagtgaaggatctgtgagaaggagtggccagagtaaaaggaataaaacaggaaattgtgg<br>ggtcctggcaaacaactcagtataattc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	906	568	NA	intergenic
0	chr5	173607108	173607413	1001597	0	+	Yb8AC1286; RIP_Alu_chr5_173_01	TGATTTTGTGCAGAGCCTTG	TATGGCCTCATTCCTTTTGC	SINE	Alu	Yb8	gagtttgcaacaattgctttagggcttaaattgcaagaacaataatagatgcattttgaaacaggcatcgtaaatgggcatagctggcaaaatacagcag<br>ctccttgggaggtcaaagccatatcgactggcaaccttttgatcaggaaaaaaccctagtgcaaattggtgacgatttccaaccagataagcagcaaccc<br>ctgtggcctggaccatccatgaccttgagctcccgggaacagcactctgtgggctgtcagagcaaatatgaacaccgtacaaaaacaggggagaggactg<br>aggtgtcaggggaagtcgcctcggtcatctgttcagttctgtttatggtccaagtgattttgtgcagagccttgcaaagaagattt<font color="green"><u>AAAAGAACTCGATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGGGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCGGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGAACTCGATG</u></font>aaaacgtttttgcaccataaaacacctttcctgtcggagtggcaaaaggaatgaggccataaaaatgctgttccagccag<br>gtctgcaggtgaatttcagtccctgaataaacattctctctttcatcagggacaatggtgagaaaaatacaaaacaaaacaaaacaaaacctctttaaag<br>agctgtgaatgtactaggtgctcatctcttccttacaaccctgcggttgtgggggatctgattcccattttgcagatgaataaactgaggctgagggagg<br>ggaagtctcttgttcaagatcacacagctgggacgtagcaaaaccaggatggaactttaccagttactgggagggatggagcctttgacttgcccactgg<br>tcccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	427	107	NA	intergenic
0	chr6	12617336	12617649	1001598	0	+	Yb8AC1368; RIP_Alu_chr6_012_04	TCAGACATGCAAAGCTTCAAA	TTTGGGTGCCCTATTTCTTG	SINE	Alu	Yb8	gtaggacacaatacaaatagaataactagacaggatttttggaaattaaaagtattaaagccaaaataaaacattcaattaaaatgttgaaaaattaaac<br>taatctcccagaagtgggaataaacagagatgagaagaataaaaagaaaggaaagaaaaaatttatacgtagggatgtaaagaccgttttaacatcagca<br>ctggaagttagaagcaagagatcggtgtcctcaaaactttgagtaaaagtatccacccggccaaatgattaaccaagtatgaggacaaaataaagaaaat<br>gtcagacatgcaaagcttcaaaacattgatcttccatcagtccttacttaggaagccaataacaaagagaagaaacaaaaacaagcaaaacaagag<font color="green"><u>AAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGCCAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAC</font><font color="green"><u>AAGA</u></font>gaagaaggaggtaaacacaggattcaagaaatagggcacccaaaacaggaaggaagaggtgcagaaaagtcttagaaagatg<br>gcaaagagatgtctcagtataagagttatgtacaggcccacagacaaacaaatacatattgaaaaattaaacagaagtcaacaagagtggttgtcttcag<br>agaaaaggaaagtggagctccttatcaaaatagactttactatatgaaaaatttttattgagaagtgtttaacataattagtgggtaatacggcaaaact<br>acaaggtcagagaaaactgagcagagaggtgaaggataacagacgacatattgccctgtaatcccagcactttgggaggccgaggcaggcggatcacgag<br>gtcaggagtttgag	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	461	145	NA	intergenic
0	chr9	18508901	18509229	1001599	0	+	Yb8AC1480; RIP_Alu_chr9_018_02	AGCTGAGCACATATCCCAGAA	>	SINE	Alu	Yb8	atcttttaagttgtcaagcacctaagaagctatttgttttcttgataatttttatttgcaatctagatctttcactattaacagaaattcctgggttaca<br>gcctcatgtttcaaaaagctagctttcagctatcaaagttcatggagacacctagcattcattaaactttcagttatagtcatgtataaaaattttaatt<br>ttcattaaaatacataactctaagcagtaagaaatattaaataagtacttataaaagcaaaatataatattaataaaatacattctaacatttttctcat<br>tactacttgactgtaattaggtcattgcttaaatatggccctaaatcagtccttaggctggatttagaatgtattttgactcttataattt<font color="green"><u>AGAAATAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATAGA</u></font>tatgttctgggatatgtgctcagctttaagacttcgaatcagtttgatttttaaagttttca<br>agttttttccctcaacaactggttctatctattctagtaccagcaagaatttattagtttactccccttacttccttacgctaatggtaactctaattgg<br>tgtagcaattattcattgccacagtaatgctgcataaaaaccactaatcctcagtggaatatcagataaggaattattgcttggctaggcagctctgatg<br>gactttgatggtcttgatcacatatctagggttggctggatgttggctgatctagactggcttcatctggttcaacttgggaaacccaattctgctccac<br>aagttccttatcctccagcaggctagcct	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	426	113	NA	intron:ADAMTSL1:NM:052866:2/13
0	chr18	70126677	70127010	1001600	0	+	Yb8AC704; RIP_Alu_chr18_068_02	AAACAGTGCCAGGATATGAACAC	CACTCTTCGATCAGTTATCATTGC	SINE	Alu	Yb8	gggcaagcatgtcaagacataattgagattttatttaaaaaatatattttttttcctagaaaactcatgtacatgcaaaatcttgcatcctaacttaaag<br>gtttacaaagtccctaaactccatatgtagagacttacggaatcataaaaaccatgataagatacctttggtctccttgtgtgaggcattatttaaaaga<br>acctccagaacctacacacacacacacacacacacacacatgcacaaacacacattctatgtgtacatatacatagtatatgcattcaaaaatatatatg<br>tgatatgtgcaaaattgcatacacacatatgcactcttcgatcagttatcattgctaaagattagtcagtgactaccatcagctc<font color="green"><u>AAGAATTTCCTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGTCCAGCCTGGGCGACAGAGC<br>GAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTCCTTTTC</u></font>actattctattagtgcgtaacaaacagtagatagcttactttatgtgttca<br>tatcctggcactgtttttgacattctacatagatgaagagtaaacctataatacatctgcatgttgcgtattgttttcccctgtaaacatatagaaaact<br>caggaacaaagattttcagtgatgtttcctgtccaaggtcacctggttagaatatgacagttgagttcatagcatagactcactgtgacccagtgtcttt<br>tcttctccatcacactagtatttttagttagagaaaactaatggaatgaacttttctattgcttcagttctccgcagatcctatgaagtaggtttgggat<br>agggagcaggtatctataggattttctacctacc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	485	136	NA	intergenic
0	chr4	37007308	37007612	1001601	0	+	Yb8NBC469; RIP_Alu_chr4_036_03	TGCGTGTGACACATGGAGT	TTCTCAACAGTTCCCCAAGG	SINE	Alu	Yb8	aagagttatagaaatgcctggatgcccagacaaaagtttgctgcagggatggggccctcatggagaacctctgctagggcagtgtggaagggaaatgtgg<br>ggttggagtcccaacacagagtcgctactggggcactgcctagcagagcttgagaagagggccaccatcctccagacctcagaatggtagatccaccgac<br>agcttgcactgtgcacctggaaaagctacagacactcaacaccagcccgtgaaagcagctgggagggaggctgtaccctgcaaagccacaggggtggagc<br>tgcccaagaccatggcagcacacttcttgcatcagcgtgacctgcgtgtgacacatggagtcaaaggagatcatttggagtttt<font color="green"><u>AAGATTTGACTGCCCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGATTTGACTGCCCC</u></font>acaggatttcagacttgcatggggcctgtagcccttttgttttggccaatgtctcccattttggatggctgtatttacc<br>caatggctgtacccccattgtatctaggaggtaactaacttgcttttgattttataggctcataggtggaagtgatttgctttgtcttggatgagatttt<br>ggactgtggacttttgagttaatgctgaaatgagttaagaccttggggaactgttgagaaggcatgattggttttgaaatgtgagaacatgatatttgag<br>agggaccaggctggaatgatatggtttgtctgtgtctccactcaaatctcatcttgaattcccatgttttgtgggagggacttggagggaggtaatttaa<br>tcatg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	51	618	297	NA	intergenic
0	chr14	60454172	60454173	1001602	0	-	Yb7AD136;pAlu14-58444197;1104685123357; RIP_Alu_chr14_059_03	CTTTTGGCAACCAGTTACAT;NA	GGAAATGGAAGGGAAATCTA;NA	SINE	Alu	Yb7	gtctctttgtaaaagtattccaaataataaatgaaataatgatagaataagaatatcaccattttgtaatccccaactgcattaagtaataatggctttt<br>ggcatcacacaagtgagacaataagatatcacgtgtctcctacagtcttgtcaaacattagttttgccagaaaaatggaacctgggtctgatcctatctg<br>tggatccacttgccaatttgcaggaaatatagaagatgggaggcatatagcgatgtatcttaagtaagcaaatcccaggctgctggaaactctttgggtc<br>gaatggctcaagtatttctagagataaactatgggaaatggaagggaaatctatcaattaaaagagatttaaaagacagagtac<font color="green"><u>AAAGAAGTTAAGGTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGTTAAGGTTG</u></font>atctctgggtggtgagaatgttttgttgttggcctacattttctgtttttatacaatgcatataaacttc<br>ctctgtaatgataacaagttgttacaaataatgtaactggttgccaaaagcaacaaaagaaacgcagttacattttttaaaaatggcaaaaccaaactat<br>tgtgctagggatgtacatttgggtgacagaactatcaggaaaaaatccaggaagacgattactgcagaggttaggataatgatttcttgtggagagagga<br>aggcatggggcacatagaagaggcttttgccctaggtggcaaaattttctttcttgatctgggtgctgattacaagcattttcaccttacaacaatgtac<br>taagccatatatat	Other;Venter	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID: 15588477</a>.</LI><LI>Wang  J., L. Song, M. K. Gonder, S. Azrak, D. A. Ray, M. A. Batzer, S. A.Tishkoff and P. Liang. Whole genome computational comparative genomics:  a fruitful approach for ascertaining Alu insertion polymorphisms. Gene.365:11-20, 2006.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr5	35909250	35909251	1001603	0	-	MIVI-2; RIP_Alu_chr5_035_01	NA	NA	SINE	Alu	Ya5	tttaccatactcagctagttgcactccagtgaactgattataataaaatatatttaactttgaaatgagatcataatttaattttggagaacagatttac<br>aaggcctttcaggatgttttagtgccttcacactcatcctcattcatcttcacactttgctatgtggaaatgccatttaaaggtagtttttggtaaaggg<br>aatgtcaaataacagaatttactctgatttattctttagtgtgctttgagattaacttacatttctaaactgcactgaatttgaaaacaaaatcaaccgc<br>ccatctccattaacttttatcttcaagttacaaatgcatagcttggtagggtaaggaattatatagctccatgactgtgtctaggctgagat<font color="green"><u>GAAAATGT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCGTCTCTACTAAAAATAACAAAAAATTAGCCGGCGTAGTGGCGGCGCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>GAAAATGT</u></font>catctgtcctttatcaacagccctaaattgactttttagaaaaaaaaaaaaaaccctgagccagttctgttcttagatgatctaagggtt<br>ttggtgataaggaaaggggattgtcccttgagtaacagtcagcagcagcacagccccagggttcattgtctcttaagccctttacagcacaggaaaagat<br>aagtggcccagtggacaagaagagagtggttaagggaagaagaaataaaccttcctcttctgaagggaatgtgctccaactttttaaatgaaacttcatg<br>atgagtctcattagcaaggggtgggggataggaaggtgacctttctgttcttcctgctgacatttccctttcagggatggagacataccctctatttcag<br>gc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Economou-Pachnis A, Tsichlis PN.Insertion of an Alu SINE in the human homologue of the Mlvi-2 locus.Nucleic Acids Res. 1985 Dec 9;13(23):8379-87.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3001638">PMID: 3001638</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Associated with leukemia	intron:CAPSL:NM:001042625:4/5	
0	chr4	2867855	2867856	1001604	0	+	ADD1; RIP_Alu_chr4_002_01	ATGTAATTGTTCAGGACATGTGGC	AAATAACATCCAGAATCTTCAGAT	SINE	Alu	Yb8	aaaccaccctcacagagtgaaattcagaaaaaaaattttgtttcaataaaaagattttgaaagatttcatcacttcaacaaaactatagttaaaaaatta<br>aaatattatattaattgaaggacagtaacagtataatgagggagcaaaaatagagaaagtagctgacattgccagaagataagtcaaattctgctttttc<br>ccacatgtaattgttcaggacatgtggctcagaatatgtgaattagtatagtaactacagcagagtctctctgggttgtgttatttgctcaattgcgaga<br>tagcatacttataaaattatttctagattcactcctgaaatcttaactgcagtctgctttgtggaatttcttcttggaagaacttgtttaa<font color="green"><u>GAGTATGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTTCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGTATGCT</u></font>gattgatatttgttcatgggccatctgaagattctggatgttattttattttattttttgaggcagtct<br>ccctctgttccccaggctggagtgcagtagcacaatctcggcttactgcacccttcgccttccgggttcaagcaattctcctgcctcagcctctggaata<br>gctgggactacaggcacgcaccatcacacccagctaattttttgtgtgtgtgtatttttagtacagacggggtttcaccatgttggccaggctggtctca<br>aagtcctgacctcaggtgatctgtccgccttggcctcccagagtgctgggattacaggcgtcagcctctgtgcctggcctggaggttattttaaatcgtt<br>ttttttttttgggatgaaaaca	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Goldberg YP, Rommens JM, Andrew SE, Hutchinson GB, Lin B, Theilmann J,Graham R, Glaves ML, Starr E, McDonald H, et al.Identification of an Alu retrotransposition event in close proximity to a strong candidate gene for Huntington's disease. Nature. 1993 Mar 25;362(6418):370-3.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8384324">PMID: 8384324</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	460	118	Huntington disease	intron:ADD1:NM:001119:1/15
0	chr3	165547677	165547678	1001605	0	-	BCHE; RIP_Alu_chr3_167_03	NA	NA	SINE	Alu	Yb8	cctttaatgctccttgggcggtaacatctctttatgaagctaggaacagaacgttgaacttagctaaattgactggttgctctagagagaatgagactga<br>aataatcaagtgtcttagaaataaagatccccaagaaattcttctgaatgaagcatttgttgtcccctatgggactcctttgtcagtaaactttggtccg<br>accgtggatggtgattttctcactgacatgccagacatattacttgaacttggacaatttaaaaaaacccagattttggtgggtgttaataaagatgaag<br>ggacagcttttttagtctatggtgctcctggcttcagcaaagataacaatagtatcataactagaaaagaatttcaggaaggttt<font color="green"><u>AAAAATATTTTTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGACGTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATTTTTTCC</u></font>aggagtgagtgagtttggaaaggaatccatcctttttcattacacagactgggtagat<br>gatcagagacctgaaaactaccgtgaggccttgggtgatgttgttggggattataatttcatatgccctgccttggagttcaccaagaagttctcagaat<br>ggggaaataatgcctttttctactattttgaacaccgatcctccaaacttccgtggccagaatggatgggagtgatgcatggctatgaaattgaatttgt<br>ctttggtttacctctggaaagaagagataattacacaaaagccgaggaaattttgagtagatccatagtgaaacggtgggcaaattttgcaaaatatggg<br>taagtgctgatttttgtcattgttctc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Muratani K, Hada T, Yamamoto Y, Kaneko T, Shigeto Y, Ohue T, Furuyama J,Higashino K.Inactivation of the cholinesterase gene by Alu insertion: possible mechanism for human gene transposition.Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):11315-9.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1662391">PMID: 1662391</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Acholinesterasemia	exon:CDS:BCHE:NM_000055:2/4	
0	chr11	118959823	118959824	1001606	0	-	PBGD; RIP_Alu_chr11_118_01	NA	NA	SINE	Alu	Ya5	accctccctcccccagccattcttgcagtccaggcagccagatggctcagaaccagacactctccttttctgaagcctgaaaaaacccacctatgagctg<br>ccttcagcctctctgagggtttaagcccagcagcctatctgacaccccgggtcccagcaagagacctagcatactagggtcccagcaagagactgggagg<br>gcaccacactctcctatctttacttactcattcttctccagggcatgttcaagctccttggtaaacaggcttttctctccaatctgccggacagaaagag<br>cctgagtgaatcccttcagggaaggaaagaagagtggggacaagaactggggaggaagatgttgttaccttagagagtgcagtatca<font color="green"><u>AGAATCTTGTCCC<br></u></font><font color="red">GGCCGGCGCGGTGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATCTTGTCCC</u></font>ctgtggtggacatagcaactgaggagagagtcaatcaatcaggtgctcattattgatcagcatttactg<br>agcctagcgctgtgctacgattcatgatggggacagaggcacataatccctggttcctgccctctgagtatatacaatcgagcaggaagaccagaaacac<br>tcataaaaagacccaaagctcaagatgttaaatgccaggctaatccaggtagtcagagctggaggtattcagaggaaagcaccttcagaactgggagcag<br>cccagaaggaatctcggggcagcgggacgggctttagctataggcaaagccagaaatgttgtgttctctcctctcggggtactgggcttcccattagctt<br>ccactcctttccagaaaa	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Mustajoki S, Ahola H, Mustajoki P, Kauppinen R. Insertion of Alu element responsible for acute intermittent porphyria.Hum Mutat. 1999;13(6):431-8.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10408772">PMID: 10408772</a>.</LI></UL>	E:Insertion-specific detection:PCR-SSCP	NA	NA	NA	NA	Acute intermittent porphyria	exon:CDS:HMBS:NM_000190:4/14	
0	chr11	57376606	57376607	1001607	0	+	C1NH; RIP_Alu_chr11_057_03	NA	NA	SINE	Alu	Yc1	gaactcctgacctcaagtgctcgtccgtcttcggcctcctaaagtgctggcattacaggcgtgagccactgcacccagcctgagtttttttttttttttt<br>aagccaaaggaggaggagtagttttgtgcacaaaagccactatttagagttccttaggttttaaacagataattaatttaatgtactaacaaatgcaaaa<br>ttaaaattttacttatgccttttaattttaagctgaacttgctacattaagagtagggtgatttggctgggcgcagtggctcatgcctataatcccagca<br>ctttaggaggctgaggcaggtggatcacttgaagctaagagtttgagaccagcctggccaacatggtggaattctgtctctact<font color="green"><u>AAAAATACAAAAATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAAT<br>GGCGTGAACCCGGGAGGCGGACGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAAATTA</u></font>gccaggcatggtggcacatgtctgtaatcccagctactcaggatgctaaggcacaga<br>atcacttgaacctgggaggcagaggttacagtgagccaaaatcgcgccactgcactccaacctgggcaacacagcaagactctgtctcaaaacacaaaaa<br>aagaataggctgggtacagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtgaatcacctgaggtcaggagttcgagaccagcttgg<br>ccaacattgtgaaaccccatctccattaaaaatacaaaaaataagccgggtgtgatggtgcacgcctgtaatcccagatacttgtgaggctgggacagaa<br>gaatcgcttgaacccgggaggcgaagg	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Stoppa-Lyonnet D, Carter PE, Meo T, Tosi M.Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus to deleterious rearrangements.Proc Natl Acad Sci U S A. 1990 Feb;87(4):1551-5.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2154751">PMID: 2154751</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	C1 inhibitor deficiency	intron:SERPING1:NM:000062:6/8	
0	chrX	30709198	30709199	1001608	0	-	GK; RIP_Alu_chrX_030_01	CCTTGATAGTGATTTCAGTAAGTTC	GCTTCTTTCTAGTGAAATCTGCAAAC	SINE	Alu	Ya5	aagcaccccttgggaagtgtgacttaagccactgggacgcattataatctcttccagcctgtcaattttgtgttattattgttccaatccaccacagagc<br>aagaaagacgggaaggtaaagacttgagttggcctcaattatccgggaaaaagattctataaattgtatcaaataactattgtaccataagatgcttctt<br>tctagtgaaatctgcaaactttttttaaaaaaagaaacattcttatagtatacttctgaagaaattcttaccttgacaaagttattatttcctggaattc<br>ttttactaagactctcaacggtagactgggttcttagatcaagccacactatagaccaaaataaaataatatacatgaaaaacttcattt<font color="green"><u>AAAAAATAAG<br></u></font><font color="red">GGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC<br>CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA<br>AAAGA</font><font color="green"><u>AAAAAATAAG</u></font>aacttactgaaatcactatcaaggataaaagactgattagtttctataaggaattaaaattctatagcttttaagagatagaaat<br>tagaaaattagaaatgaatgggcatattgttagataaaaataaatttatgagaggatttaaagcttttatgcaaaattacagaccaagttaggagaataa<br>tacaaaccttagagtgcttattttgtattatttttatagaacaaaactacaaaaaatatttggaatatagattttctaagtatacatgaggccagagaat<br>atctaaaagctaggcaggctagttggtagcacaaaatgcaaaacccaggatcatcataccatatataaagtgtgcatcttaacaaactagggagcaattt<br>gtgac	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Zhang Y, Dipple KM, Vilain E, Huang BL, Finlayson G, Therrell BL, Worley K,Deininger P, McCabe ER.AluY insertion (IVS4-52ins316alu) in the glycerol kinase gene from an individual with benign glycerol kinase deficiency. Hum Mutat. 2000;15(4):316-23.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10737976">PMID: 10737976</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Glycerol kinase deficiency	intron:GK:NM:001128127:4/20
0	chr3	122003445	122003446	1001609	0	-	CASR; RIP_Alu_chr3_123_02	TCGAGCTACCGCAACCACGAGCTGGA	GGATCCCGTGGAGCCTCCAAGGCTG	SINE	Alu	Ya4	gtcgggtcagcgtatcgctgcttttctgggcctccagggagttctggtgcgtagaattcctgtgggccatggcgttcttctgaggctcatcaaagctcag<br>tgagaaggtgaccgtgccgctgccaaagatgaccttctgcttgcatctgggctgctgctgagatcgttgctgctgtgggagggtcaggggctgctgctgc<br>tgctcttgctgggttagggccagcggctgctgctgcttctgcctctcgggctgtgggaatgggtcttcgctgttgctcttgctgctgatggaggaggagg<br>gggtggatcccgtggagcctccaaggctgctggaccgcttgcgggagacgttgctgcggcgcagcgtggcccgggcagccacctt<font color="green"><u>GAAAGCGTGAGCTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTTAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNN</font><font color="green"><u>GAAAGCG<br>TGAGCTGC</u></font>ggtgctgcaacgcacctcctcgatggtgttgcgggatggcttgaagagaatgatgtagatcttgttgaagaagatgcacgccagcaagccaa<br>agctggctgccaggatggcaatcacctctacggcagagacaaacttgccataggtgctggcataggctggaatgaaggagatccagacgatgaagaagat<br>gagcatgctgaaggtgatgaacttggcttcattgaagttctccggcagcttccgggacttgaaggcaaagaagaagcagatggcagccagcaggcaggtg<br>tagccgatcaggaagcccagggccatgagggagccctcgtggcacgtgatgaagatgatctcatcctccagctcctggttgcggtagcttgac	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Janicic N, Pausova Z, Cole DE, Hendy GN. Insertion of an Alu sequence in the Ca(2+)-sensing receptor gene in familial hypocalciuric hypercalcemia and neonatal severe hyperparathyroidism. Am J Hum Genet. 1995 Apr;56(4):880-6.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7717399">PMID: 7717399</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	96	374	Familial hypocalciuric hypercalcemia	exon:CDS:CASR:NM_000388:7/7
0	chr5	112175867	112175868	1001610	0	+	APC; RIP_Alu_chr5_112_02	GTTTCTCCATACAGGTCACGG	CTGTAGGAATGGTATCTCG	SINE	Alu	Yb8	acttgatagttttgagagtcgttcgattgccagctccgttcagagtgaaccatgcagtggaatggtaagtggcattataagccccagtgatcttccagat<br>agccctggacaaaccatgccaccaagcagaagtaaaacacctccaccacctcctcaaacagctcaaaccaagcgagaagtacctaaaaataaagcaccta<br>ctgctgaaaagagagagagtggacctaagcaagctgcagtaaatgctgcagttcagagggtccaggttcttccagatgctgatactttattacattttgc<br>cacggaaagtactccagatggattttcttgttcatccagcctgagtgctctgagcctcgatgagccatttatacagaaagatgtggaattaa<font color="green"><u>GAATAATG<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGCCGAGGCGGGTGGTCACGAGGTCAGGCGGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGCGGTGGCGGGCCTGTAGTCCCAGCTACTCGGGGGTGAGGCAGGAGAATGGCTGAACCCA<br>GGAAGCGACGTTGCATGTAGCCGAGATTGCGCCATTGTCGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATAATG</u></font>cctccagttcaggaaaatgacaatgggaatgaaacagaatcagagcagcctaaagaatcaaatgaaaacc<br>aagagaaagaggcagaaaaaactattgattctgaaaaggacctattagatgattcagatgatgatgatattgaaatactagaagaatgtattatttctgc<br>catgccaacaaagtcatcacgtaaagcaaaaaagccagcccagactgcttcaaaattacctccacctgtggcaaggaaaccaagtcagctgcctgtgtac<br>aaacttctaccatcacaaaacaggttgcaaccccaaaagcatgttagttttacaccgggggatgatatgccacgggtgtattgtgttgaagggacaccta<br>taaacttttccacagctacatc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Halling KC, Lazzaro CR, Honchel R, Bufill JA, Powell SM, Arndt CA, Lindor NM. Hereditary desmoid disease in a family with a germline Alu I repeat mutation of the APC gene.Hum Hered. 1999 Mar;49(2):97-102.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10077730">PMID: 10077730</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	61	NA	NA	Hereditary desmoid disease	exon:CDS:APC:NM_000038:16/16
0	chrX	138644119	138644120	1001611	0	+	FIX; RIP_Alu_chrX_138_03	NA	NA	SINE	Alu	Ya3a1	aaaagcgaaatgtgattcgaattattcctcaccacaactacaatgcagctattaataagtacaaccatgacattgcccttctggaactggacgaaccctt<br>agtgctaaacagctacgttacacctatttgcattgctgacaaggaatacacgaacatcttcctcaaatttggatctggctatgtaagtggctggggaaga<br>gtcttccacaaagggagatcagctttagttcttcagtaccttagagttccacttgttgaccgagccacatgtcttcgatctacaaagttcaccatctata<br>acaacatgttctgtgctggcttccatgaaggaggtagagattcatgtcaaggagatagtgggggaccccatgttactgaagtggaa<font color="green"><u>GGGACCAGTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGATGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGGACCAGTTTCTT</u></font>aactggaattattagctggggtgaagagtgtgcaatgaaaggcaaatatggaatatataccaaggt<br>atcccggtatgtcaactggattaaggaaaaaacaaagctcacttaatgaaagatggatttccaaggttaattcattggaattgaaaattaacagggcctc<br>tcactaactaatcactttcccatcttttgttagatttgaatatatacattctatgatcattgctttttctctttacaggggagaatttcatattttacct<br>gagcaaattgattagaaaatggaaccactagaggaatataatgtgttaggaaattacagtcatttctaagggcccagcccttgacaaaattgtgaagtta<br>aattctccactctgtccatc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu RevGenet.2001;35:501-38. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID: 11700292</a>.</LI><LI>Li X, Scaringe WA, Hill KA, Roberts S, Mengos A, Careri D, Pinto MT, Kasper CK, Sommer SS. Frequency of recent retrotransposition events in the human factor IX gene. Hum Mutat. 2001 Jun;17(6):511-9.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11385709">PMID: 11385709</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Hemophilia B	exon:CDS:F9:NM_000133:8/8	
0	chr17	41245822	41245823	1001612	0	-	BRCA1;c.1739_1740insAlu; RIP_Alu_chr17_038_01	TTGTGAATTTTCTGAGACGG	GAATGCTATGCTTAGATTAGGGGTT	SINE	Alu	Sq	agagttcactccaaatcagtagagagtaatattgaagacaaaatatttgggaaaacctatcggaagaaggcaagcctccccaacttaagccatgtaactg<br>aaaatctaattataggagcatttgttactgagccacagataatacaagagcgtcccctcacaaataaattaaagcgtaaaaggagacctacatcaggcct<br>tcatcctgaggattttatcaagaaagcagatttggcagttcaaaagactcctgaaatgataaatcagggaactaaccaaacggagcagaatggtcaagtg<br>atgaatattactaatagtggtcatgagaataaaacaaaaggtgattctattcagaatgagaaaaatcctaacccaatagaatcactcgaaa<font color="green"><u>AAGAATCTG<br></u></font><font color="red">tgccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctaaggtcgagagatcgagaccaccctggccaacat<br>ggtgaaaccccgtctctaccaaaaatgcaaaaaaaaattagccaggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaat<br>cgcttgaacccgggaggcggaggttgcggtgagccaagatcacgccactgcactccagcctgggcaaaaagagtgaaactctgtctcaNNNNNNNNNN</font><font color="green"><u>AA<br>GAATCTG</u></font>ctttcaaaacgaaagctgaacctataagcagcagtataagcaatatggaactcgaattaaatatccacaattcaaaagcacctaaaaagaata<br>ggctgaggaggaagtcttctaccaggcatattcatgcgcttgaactagtagtcagtagaaatctaagcccacctaattgtactgaattgcaaattgatag<br>ttgttctagcagtgaagagataaagaaaaaaaagtacaaccaaatgccagtcaggcacagcagaaacctacaactcatggaaggtaaagaacctgcaact<br>ggagccaagaagagtaacaagccaaatgaacagacaagtaaaagacatgacagcgatactttcccagagctgaagttaacaaatgcacctggttcttt	Other	<UL><LI>Teugels E, De Brakeleer S, Goelen G, Lissens W, Sermijn E, De Greve J. De novo Alu element insertions targeted to a sequence common to the BRCA1 and BRCA2 genes. Hum Mutat. 2005 Aug 8;26(3):284 [Epub ahead of print]<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16088935">PMID: 16088935</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	NA	NA	breast/ovarian cancer	exon:CDS:BRCA1:NM_007294:10/23
0	chr13	32893298	32893299	1001613	0	+	BRCA2;c.156_157insAlu; RIP_Alu_chr13_031_02	ATGCCTATTGGATCCAAAGAG	CACATTCATCAGCGTTTGCTTC	SINE	Alu	Ya5	ttaatgtgaatagtttttgattccgaaccatgaataataagaaaataaataaaatttaaatgaaaataaaagctaatatatacagcttttaataatatag<br>ttaaatgccatcttgtaacttttgtgaactcttgttacacctttctatagattcgcaagagaatggattaatgatcttgtttaattaatatgccttaaca<br>aaagtaatccatagtcaagatcttaagcatttttttccttatgatctttaactgttctgggtcacaaatttgtctgtcactggttaaaactaaggtggga<br>ttttttttttaaatagatttaggaccaataagtcttaattggtttgaagaactttcttcagaagctccaccctataattctgaacctgcag<font color="green"><u>AAGAATCTG<br></u></font><font color="red">TGCCGGGCTCGGTCGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGACACCATCCCGGCTGAAACGG<br>TGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCCTCANNNNNNNNNN</font><font color="green"><u>AAGAATCT<br>G</u></font>aacataaaaacaacaattacgaaccaaacctatttaaaactccacaaaggaaaccatcttataatcagctggcttcaactccaataatattcaaagagc<br>aagggctgactctgccgctgtaccaatctcctgtaaaagaattagataaattcaaattagacttaggtaagtaatgcaatatggtagactggggagaact<br>acaaactaggaatttaggcaaacctgtgttaaaatcttagctcattcattaattgtgtcatgctgggcaaatcagtctctctggcctctttttcctcact<br>cgaaaaatggagacgatgaaaataatgtctcataggtttggattaaattaaataatgtaggtacttagtaaatgttctctttcatccctcct	Other	<UL><LI>Teugels E, De Brakeleer S, Goelen G, Lissens W, Sermijn E, De Greve J. De novo Alu element insertions targeted to a sequence common to the BRCA1 and BRCA2 genes. Hum Mutat. 2005 Aug 8;26(3):284 [Epub ahead of print]<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16088935">PMID: 16088935</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	59	NA	NA	Breast cancer	exon:CDS:BRCA2:NM_000059:3/27
0	chr1	197396643	197396644	1001614	0	-	CRB1; RIP_Alu_chr1_194_01	CTCCATGTTTGTCCGAACGC	TCTTGCTTGTCAGGTAGGC	SINE	Alu	Y	tttagtcttacatcttggatacagcctttgaagaatccaccattaagttcagtctcttgcttgtcaggtaggccaccaatgtagatgacatctccctttt<br>cgattttccacgtagaagcagaaataaatcctaggttttgtgaagactgatacagttcaattttatatggcttgattttcaaagatatcaagtggacatt<br>tccatcattaagaacaaattttactactaatttgggagagtttggagtcagcattgctagtctgccgcgctctagccagacacggatatattgataagtg<br>ctgttttccaaagctagaagtaagcctgatggttgaagcgttcggacaaacatggagaggctgatggtgtctccatagctctcatc<font color="green"><u>AAGAGTAAAGATGA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAGAGTAAAGATGA</u></font>cataaccagtggagtcatcctggccaaatctgcctgccacatactcttcaatgtcaaaatagaggaggaggagaaa<br>aaaaaagaaacatcttaaggctcaaaagacagaagggatggaagacgaaaattatacatttcacacacacacatgcacacaagcatacacactcatacat<br>agcttttaaagttcaggacaggtttattaaatagaataatgatttggcctctttctggacttctgagtttactttaaccctaaaataactatattttggt<br>ttgtagtttacacttcaggcatattgatcacaaaacagaccaaaaagatctctgcactgataaactaaagaatctcccctttgctgccctaaaatatggg<br>ccttaatggt	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C.  A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI><LI>den Hollander AI, ten Brink JB, de Kok YJ, van Soest S, van den Born LI, van Driel MA, van de Pol DJ, Payne AM, Bhattacharya SS, Kellner U, Hoyng CB,Westerveld A, Brunner HG, Bleeker-Wagemakers EM, Deutman AF, Heckenlively JR,Cremers FP, Bergen AA.  Mutations in a human homologue of Drosophila crumbs cause retinitis pigmentosa(RP12).Nat Genet. 1999 Oct;23(2):217-21.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10508521">PMID: 10508521</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	NA	NA	Retinitis Pigmentosa	exon:CDS:CRB1:NM_201253:7/12
0	chrX	154130461	154130462	1001615	0	+	F8; RIP_Alu_chrX_153_01	ATATCCAGATGGAAGATCCCAC	GCTCCAGGCATTGATTGATCCG	SINE	Alu	Yb9	tcgagctttaccaagttgtgaaaatgaggtggtattttttttttgtcaattatttagagcttcaggtacaaagtgttcaaagcttcaagtatatctgccc<br>tactctgagaactctgatgatttctaccagcaatattcattttaaatttgataatgatgtaaacttgtatttatttcctgacacaagcaaccattccaga<br>aaggaagaaagctgtaaagaagtaggctgagtaggtagggaacctctgcccacattgctactcactattgctgtacaccagaaaaagtgtgctcatccca<br>gcatgtagatgctcgccaataaggcattccacccgccaaattccagctttggatggtaacatttccactgtctcaaaaacaccttat<font color="green"><u>AAAAACCAACAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGGTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCGAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAGAAAAAG</font><font color="green"><u>AAAAACCAACAGG</u></font>aacagaaattatttcttttcactaaaaaatgagcatgagatacattggtttatgcgaaatatcagag<br>tagacctaccaaatttggtagttccactacttttggacccctcaaatgcaaagtgcttgctacgtgacccttacagttgggggttgtggagattgagttc<br>tgaccactcccctccccccaggagatgagaaacagggtgactgaattctttgatggttgggacaggagaatgctactgcattatgattgacctacattcc<br>cagggtctttctgagcaaaaggtgtgtttcccattggccagatgtggactctgtgaaacagataagtcagggtgagttccctctggatccagtccactag<br>agctgcctacaagggtaaag	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C.  A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI><LI>Ganguly A, Dunbar T, Chen P, Godmilow L, Ganguly T. Exon skipping caused by an intronic insertion of a young Alu Yb9 element leads to severe hemophilia A.Hum Genet. 2003 Sep;113(4):348-52. Epub 2003 Jul 12.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12884004">PMID: 12884004</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Hemophilia A	intron:F8:NM:000132:18/26
0	chr2	145157590	145157591	1001616	0	-	ZFHX1B; RIP_Alu_chr2_144_01	NA	NA	SINE	Alu	Ya5	aattctaatctaagtacctagaatgtagaggtaccccattgtgttccttttgtttggtttcacagattcttctcttggtagacaattgcaattgttatct<br>aatcaaggaaatgtaacggtaattttaattatcattttaggtgaaaaaccttacgagtgcccaaactgcaagaaacgtttctcccattctggttcctaca<br>gttcgcacatcagcagcaagaaatgtattggtttaatctctgtaaatggccgaatgagaaacaatatcaagacgggttcttcccctaattctgtttcttc<br>ttctcctactaattcagccattacccagttaagaaacaagttggagaatggaaaaccacttagtatgtctgaacagacaggcttactt<font color="green"><u>AAAATTAAAACA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAATTAAAACA</u></font>gaaccactagacttcaatgactataaagttcttatggctacacacgggtttagtggcactagtccctttatgaatggt<br>gggcttggagccaccagccctttaggagttcatccatctgctcagagtccaatgcagcacttaggtgtagggatggaagcccctttacttgggtttccca<br>ccatgaatagtaatttaagtgaggtacaaaaggttctacagattgtggacaatactgtttccaggcaaaaaatggactgcaaggctgaagaaatttcaaa<br>gttgaaaggttatcacatgaaggatccatgctctcaacctgaggaacaaggagttacttctcctaatattccgcctgtcggtcttccggtagtgagtcat<br>aatggtgcca	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C.  A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI><LI>Ishihara N, Yamada K, Yamada Y, Miura K, Kato J, Kuwabara N, Hara Y, Kobayashi Y, Hoshino K, Nomura Y, Mimaki M, Ohya K, Matsushima M, Nitta H, Tanaka K, Segawa M, Ohki T, Ezoe T, Kumagai T, Onuma A, Kuroda T, Yoneda M, Yamanaka T, Saeki M, Segawa M, Saji T, Nagaya M, Wakamatsu N.  Clinical and molecular analysis of Mowat-Wilson syndrome associated with ZFHX1B mutations and deletions at 2q22-q24.1.J Med Genet. 2004 May;41(5):387-93. No abstract available.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15121779">PMID: 15121779</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Mowat-Wilson syndrome	exon:CDS:ZEB2:NM_001171653:7/9	
0	chrX	153004665	153004666	1001617	0	+	ABCD1; RIP_Alu_chrX_152_01	TGGCCTTATTCACCCAAGGCTCCAAG	GGATGGGGTCCAGCGTCCACAG	SINE	Alu	Yb9	attgttgttgttaccgtgaacttcactgactccaggcccctggcctcctccctgcacacagcccgcctccagcctggccggcattttcccaaagtaggca<br>tttcctagctccagcgaggaccatggagtcagtgaattgaggagcctgaggtccatgatgcagagcccaggggccactgtggcatctctgggccactctg<br>gcacctggggaggcagtggggtctgtactgtcagtctagagacataaagaaagtgctttttgggccgggcgtggtcgctcatgcctgtcatcccagcact<br>ttgggaggccgaggtgggcagatcgcttaagcccaggagttcaagaccagcctgggcaacatggcaaaccccgtctctacagaaatttttaaaaatacac<br><font color="green"><u>nnnnn</u></font><font color="red">GGAGAATGGCGTGAACCCAGGAAGCGGAGCTTGCAGTGCGCCGAGCTTGCGCCATGCAGTCCGCATCCGGCCTGGGCAACAGAGCGAGACTCCGT<br>CTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaataagccaagtgtggtggcggtgcctgtagttctagccacttgaaaaaaaaggctaaagtgagagggt<br>ctcttgagcccaggaggttgagcctgcagtgagccatgatcccaccactgcactccagcctgggcaacagagcaaggccccgtctcaaaaagaaaagaaa<br>gaaactgccttttgtccccagtgactcaggaggccaaggtgagagagtcgcttgaggccaagagtttgagaccagcctgagtaacatagcaagaccctgt<br>ctctaaaacaacatttaaaaattagccaggcatggtggcgtgcatctgtaggcccagctactcaggaggctgaggtgggaggatcacttgagcccaggag<br>ttggagactgcggtgagctgtgatcatacc	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C.  A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI><LI>Kutsche K, Ressler B, Katzera HG, Orth U, Gillessen-Kaesbach G, Morlot S,Schwinger E, Gal A. Characterization of breakpoint sequences of five rearrangements in L1CAM and ABCD1 (ALD) genes.Hum Mutat. 2002 May;19(5):526-35.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11968085">PMID: 11968085</a>.</LI></UL>	E:Insertion-specific detection:PCR	 TSD unavailable	NA	NA	NA	Adrenoleukodystrophy	intron:ABCD1:NM:000033:5/10
0	chr5	112170890	112170891	1001618	0	-	APC; RIP_Alu_chr5_112_03	CAACTCTGGGCCAGTTGC	CCATCCTTCTTACGAGTGC	SINE	Alu	Yb9	tcaaaaaaaaaaaaaaaaaattattattatggatactaagacatcattagaaaaatgtgaacctttatattctctggatcacgctcatagtttttgtctt<br>gttctaaattttgttttcatactcttttatactatactaatagaaatggattattttgttacaatatttgtgactattttttcctccacctatgggctac<br>acctctcaactataatttgcttaatttagtctcctctataatactataaactgttattacattaagtacactaatgagttaaactaagagttagtagtta<br>tcttttcacagtaataaatatattttggcttaaaactttcatgattatataaaacattgcttacaattaggtctttttgagagtatgaattctgtacttt<br><font color="green"><u>nnnnn</u></font><font color="red">GGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaaagtaata<br>taaaactctatatatacctgtggtcctcatttgtagctatcaagctggacacattccgtaatatcccacctccactttcaataatggctaaagtgtttgt<br>ctggctccggtaagtaagagtgccaaccaaaaatgcaagtgcaccatctacagcacatatatcagctttattctcagtgcaatgtgctgacaaattccat<br>aaggcactcaatacgcttttgagggttgattcctagtaagaaacagaatatgggtcatctaattagagttggaatttgtctctcattaacttctatgtta<br>ctgatattgaataaaagctattttttaatctatcctattgcccgtccctcactggtaaattaagaactttccatttagaaaaatgttcat	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C.  A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI><LI>Su LK, Steinbach G, Sawyer JC, Hindi M, Ward PA, Lynch PM.  Genomic rearrangements of the APC tumor-suppressor gene in familial adenomatous polyposis.Hum Genet. 2000 Jan;106(1):101-7.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10982189">PMID: 10982189</a>.</LI></UL>	E:Insertion-specific detection:PCR	 TSD unavailable	60	NA	NA	Familial Adenomatous Polyposis	intron:APC:NM:000038:15/16
0	chrX	154158339	154158340	1001619	0	+	F8; RIP_Alu_chrX_153_02	NA	NA	SINE	Alu	NA	agtctatctgtgtgagggtgctcggggtcaaatgtttcatgtttttggaccactgggttgaggtgtcatccacaattatccttttttcaagttctgtttc<br>ttctagtgggagtctgaattgtttcaaagctctcttactacgttgcgtgacaaaattctgctggcttgtattaggagatatccttgtggtgcatgcatat<br>ttctctacaatttgcttggtttgatttcccaagccttccaagttttcttcctcccctttttttgagaaatgagctgtgtgtttctttgttctatttgttg<br>aatcatttaatgacctaaaatcttgaagtactggagcatatgccccgtcatatgaaccttctacattttgcctagtgctcagtaagaaaaggttcttcat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaaattcttagtgccagtcactgtatgtatctgaggcaaaactacattctcttggattaatgtttccttcttttctattt<br>cttcctgaatttttttttcttgattgtgtgtattattttcatgtaaattatccaagttagtaagaaataggtttctgctgcttggaaaaaccatctcttt<br>gagtcctacgtcctttgtaaattcaccctttcctactaccactttgtttttctcagacaagaaattctgaccttccacagatttttctggtcctaaggat<br>actaattgctttggactggggccttgcccagagttcagagagttctttccatgagtcctttgtatccaccttgctgattctggcaagaatagcatcttaa<br>agaacgacatatctggattt	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI><LI>Sukarova E, Dimovski AJ, Tchacarova P, Petkov GH, Efremov GD.  An Alu insert as the cause of a severe form of hemophilia A.Acta Haematol. 2001;106(3):126-9.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11713379">PMID: 11713379</a>.</LI></UL>	 	 TSD unavailable	NA	NA	NA	Haemophilia	exon:CDS:F8:NM_000132:14/26	
0	chr10	90773050	90773051	1001620	0	-	TNFRSF6; RIP_Alu_chr10_090_01	NA	NA	SINE	Alu	NA	taatacctgagtctacagtacactttaacctctagatctttttaggcaggagttctgtaatacatctagctgattatgaaggaaaagtttcttaagcctc<br>agactattgtgtcttattgttacttgattatttttaactatgagtattcattataaatttaaacaaactgcctgataaatgctttatgctgagcaggtag<br>aattgtatgagaaataacaagatcccataatatgtcactgaaattagtaacattattttactctgaaattggcctattactctaaaggatgccatctcta<br>tgaaataaaatgataaaagccttaccagataaatttattgccactgtttcctagaaagcaaaaaatggaagcagagaaagaca<font color="green"><u>AGAATATTCTAAATGTG<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGAATATTCTAAATGTG</u></font>aacttctaatttttccttaattcagaaagaagtacaatcagttgcttgatgtataaaattaggaagctagatt<br>aagtgattaagaaggttacttttaccattcaatttttattctgaaaggttccggccttgccagaaactaagcaatattgtcttagtttttaaaggcaaga<br>aacctaaagaattcataaaataggttgaggttatttttcatatagacttattaaaataaataataaatataactactctaaaattttcttccctgtaact<br>attcttattcttaataccagaaaatggctcaaattgaaattttttttaccatattaatttaaagaatcctaactcccactgagccctggccccaaataag<br>aaaataattc	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI><LI>Tighe PJ, Stevens SE, Dempsey S, Le Deist F, Rieux-Laucat F, Edgar JD.  Inactivation of the Fas gene by Alu insertion: retrotransposition in an intron causing splicing variation and autoimmune lymphoproliferative syndrome.Genes Immun. 2002 Oct;3 Suppl 1:S66-70. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12215906">PMID: 12215906</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	ALPS	intron:FAS:NM:000043:7/9	
0	chrX	138630554	138630555	1001621	0	+	F9;F9; RIP_Alu_chrX_138_04	NA;NA	NA;NA	SINE	Alu	NA	aacaggctcatttactttgtgaaaacttacactaaaattgtgtgtattttttgaatatatgttatacattaataaatagggtttttaaacctgtagttca<br>taatttagtgaaagtagaatatccaaacatttagttttaaaccaatcaattatagtgctaccatcatttttatgcattattgagaagtttattttacctt<br>tctttccactcttatttcaaggctccaaaatttctctccccaacgtatattgggggcaacatgaatgcccccaatgtatatttgacccatacatgagtca<br>gtagttccatgtactttttagaaatgcatgttaaatgatgctgttactgtctattttgcttcttttagatgtaacatgtaacatt<font color="green"><u>AAGAATGGCAGATGC<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAGAATGGCAGATGC</u></font>gagcagttttgtaaaaatagtgctgataacaaggtggtttgctcctgtactgagggatatcgacttgcagaaaac<br>cagaagtcctgtgaaccagcaggtcataatctgaataagattttttaaagaaaatctgtatctgaaacttcagcattttaacaaacctacataattttaa<br>ttcctacttgaatctgcttccttttgaaatcatagaaaatatcagtagcttgaattagaccaattaattttctagattgcatcatattttaaatataaac<br>tatgtaatcatctacaacctgaattctttctgtgtccaatttgtccaatttttttctctaacatttatatcacaaagcaattaatttgtgtgatttctgc<br>atatgtattt	Other;Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI><LI>Vidaud D, Vidaud M, Bahnak BR, Siguret V, Gispert Sanchez S, Laurian Y,Meyer D, Goossens M, Lavergne JM.  Haemophilia B due to a de novo insertion of a human-specific Alu subfamily member within the coding region of the factor IX gene.Eur J Hum Genet. 1993;1(1):30-6.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8069649">PMID: 8069649</a>.</LI><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. Review.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID: 15983781</a>.</LI></UL>	 	NA;NA	NA;NA	NA;NA	NA;NA	Haemophilia B;Haemophilia B	exon:CDS:F9:NM_000133:5/8	
0	chr1	8446635	8446636	1001622	0	-	1104685352214	TTTCTGAAGGCAGTGAACTGAA	AACACAAAGAATTTGGGCATTT	SINE	Alu	AluYa5	agctgggattttgaatgagatagtgttgaatccatttgagtacgttccctttatccgtcttttttctatttgtgaagtcctttcaagtcatatttttatc<br>ctctttcctttcctcacactacttctgcacccaaagttgcagcttttcccctgagagaatatatagtagatttcaaaacctttgtcttctgtgttaactc<br>tttgaggtaaactttacttgaaaatccaacacaaagaatttgggcatttgaggagtttgtatttccctggttactaatcatattgggcatcctataatga<br>gtttattggctgtttgtgtttctttttcatgaagggcctgtgtaagtcttttgcttatttttcaatggattgtccttttctttttcatttgt<font color="green"><u>AAGAGTTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGTTC</u></font>agatattcatcttaaataatgtatgttcagttcactgccttcagaaaggaagctctctggctgtttgggattctgtcttggct<br>gggtttcagagctcaggcccagggagtggaaacccttatttgtgtggctttactgtctttatgagacagggccacacaagctcataggatctcaggaatg<br>ttctcattattgataatgcccaatgtgggaagaatctcttggcttgggatgagaggggttcctaagaagttctcttggctctattttattcttatgattt<br>atataggagcaatggtaattttttaatttttttatttttggtctctctgattctaaagaaaaatttggaggagagaatagttaactgtagtcctacaagt<br>tttcttaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	537	221	NA	intron:RERE:NM:012102:13/24
0	chr1	64958079	64958080	1001623	0	-	1104685764890	TTGGCCTAGAGAGATCTGAAGC	GGCCTTTATTCTGATAGCATGG	SINE	Alu	AluYb8	tattaaactaggctaagaaaaaatgaacctgataatcacctttgtgccagaagacaaaaataactggacaggaagcccaggcagtcccagtggcggtgct<br>gtcttttacactgacgttaactctaacgatcagcggagtaaccgcacagcgctgctgggcacctggagcttattgtttccgtgtggcatatgatgaagta<br>tcagaacggggaggagtatatctccaagaaggaatgtgatgagcagaaaaactcatcctgtgagattggcctagagagatctgaagccaggagccatttg<br>gtcttgtccaatggcattaatgtacccacagacaaaggccaaaggggacatggaggccagagctgctggtcaacggcttgttt<font color="green"><u>CCCCCTATTGTTTTCTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGCCCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CCCCCTATTGTTTTCTT</u></font>acccaactccatgctatcagaataaaggccatccttccccgtatt<br>tttctcaagttatacaagtgccgttattcttcaagcaacaaagaattccactagccttttgctaaggataaaacatttccaaaatataagttgtttaaac<br>tgcaggtatagaataatttcttcaactgtcttctttttcccaaatgaataatgctacctagatgaaaacaatttttttcttcaccttttattccaaattt<br>ctttttttaaaaaaagcttccatcttttaaaattcaaacagaaatactgagggaagttccagtttcaaaccatcttttgtcaagaaaaaaaactagtgaa<br>aggtactttcaggaaatcaagtacagtatatgatttca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	520	166	NA	intron:CACHD1:NM:020925:1/27
0	chr1	66055942	66055943	1001624	0	+	1104685764582	NA	NA	SINE	Alu	AluYg6	ttcaaaatatgttcttcagtttcaaagttgttttggctattctagattctttgcatttccatatgaatttttagattcatcttgtcaatttgtgtaaaat<br>agcctgttgagattgtgagtagcattgcattaaatctgtagataaatttgaggagagctggcatattaaccatattgagtcttctgacccataagcacag<br>tacatctctcattttagttaggtcttaataatttccgtcaacagcatttcatagttttcaatgtgcagatcctaaacatcttttgtcaaatacattacaa<br>agtatttctatttttgatgttattgtaaatgatattttaaaataatttctgtttcatcagttatccaatataaattcagtatcat<font color="green"><u>AATATGAATAATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATATGAATAATTTT</u></font>ccttattatccttttaatatctgtagactgtgtagcaatatcgtgctttcagtttttatattcttaatttgtgacttctg<br>tggtttttcctggtcagtctgtgatatggcttggccatgttcccacctaaatctcatcttgtagttcccataatccccaagtgtcatgggaggaacccag<br>tgggaggtaatcatgggggtggttacctccatgctgttcttcactattatggcggttacctccatgataatgagtgagttctcatgagagctgatggttt<br>tataaggggcttttccccacattcactctgtacttcttgctgccaccatgtttgcatgtccttccaccatgatattctaagtttcctgaggcctcctcag<br>ccctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LEPR:NM:002303:5/20	
0	chr1	70061671	70061672	1001625	0	+	1104685763673	GGTATCATCGTCCTGTGAGTGA	ATCCCAGCATTTACCTCTTGAA	SINE	Alu	AluYb8	agtactaactttacaaccttactttccctgccttggctttcctaactgtgctaatggacacaaccacacttagtaaagtttaacttgtactgacttcaca<br>gcatgtcagatgtggtgaaatgatgcatggcattcctcatttcgacaacatttcagtctgccagatggcacttcaataatatattacggtgtattacaaa<br>gactgtacagatatcccagcatttacctcttgaaaatacttaactacaattataccatttaagtctccagtcacttttccttaacttccttagcttttac<br>aataaagcacatatttttattaaaaaacatttaataacatacccagtgagtgattgcctactcgtagactgttaaactgtctcat<font color="green"><u>CACAAGCTACTTTAT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>ATAAA</font><font color="green"><u>CACAAGCTACTTTAT</u></font>gatttgatgtgagaatttaattactttttaagtgaatcttttatgcaattatccttaatcactcacaggacgatgatacc<br>tgtgagtctgcatctgcagaaggactgcccaggtgctttaaagcataagacttcttgttttctgttcacaggcaagtccattataagaagagcaccagcg<br>ttattctaaccagtttaagaagattatctcctttgctctttgcagcaatactagtgtcactaccctttttggataaaaagttaaaaatccggagaggtta<br>gataacttgatcaaggtcacacagcatactaagtgattaaaccggaacaaaaccctggaaatttggctccagagcctttattgttaatgactgtgcaaca<br>gctgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	588	269	NA	intergenic
0	chr1	52449445	52449446	1001626	0	+	1104685768192	NA	NA	SINE	Alu	AluY	tttagctacacaaatacttaccactgtgttacaattgcctgctacattcaatacagtaacatgctgtacaagtttgcagcctaggagcaataggctatct<br>attccatatagactatgtgtatagtaagctataccatataccatataggtttgtgtaagtatactctatgatgttcatacaactatgaaatcggctaatg<br>acacatccctcagaacatatccttgtcattagcaatgcaagactgtacttaaatactacaaaaatttagtagtaccaaaagtactacaaaaatatgagat<br>tttgaggccaggtgccgtggctcaggcccataatcccaggactttgtgaggccgaggcaggcggatcatttgagctcaggagttt<font color="green"><u>GGCCAGGCTGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>GGCCAGGCTGATCTT</u></font>acatggtgaaatccagtctctactaaaaatataaaaattagccaggtgtggtggcgcacacctgtaattc<br>cagctagtcaggaggctgaagcacaagaattgcttgaacccaggaggcggaggctgcagtgagtcaagattgcacaactacactccagtctgggtgacag<br>agcaagacactgtctcaaaaaaaaagaaaagaaagtaagggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtgaat<br>cacgaggtcaggagttcgagaccagtctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattcgctgggcgtggtggtggccgcctgta<br>atcccagctactctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RAB3B:NM:002867:1/5	
0	chr1	46296452	46296453	1001627	0	+	1104685509087	TGCCTATCACACAAAGCCTAGA	TGGCACATCATGGGTACTTAAA	SINE	Alu	AluYa5	ggccaggctggtctcaaactcctgacctcatgatccacccacctcagcctcccaaagtgttgggattacaggcttgagccactgtgcctggcccaattaa<br>gtctattttgattgccctctcatgctgtcagtgtcactggtactaattgtatagtgagggtcaaggaaaagattctgtaaggttgtaacttcaatgagta<br>aattttcctgggaaagaacattctttttatagaaatgattctaaatctggtacagttgtgctgctttggtttacagctctgtggtatacatatttagtac<br>atgaggacagggaacttgtttggcacatcatgggtacttaaagtatatgtata<font color="green"><u>AGTGCAGGAATTAGAGACGTAAGCCACTGCACCCGGCCCTCATTCTT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTTAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAACAATAATAAAAAAAAAAAAAA</font><font color="green"><u>AGTGCAGGAATTAGAGACGTAAGCCACTGCACCC<br>GGCCCTCATTCTT</u></font>tgagagtctgaggcaggaggatcgcttgagcccaggagttcaagactagcctgggcaacatagttgagaccttgtctatacaaataa<br>taataatcataaaaaaaaaattagccgaggatggtggggtgtgcctgtagtcccagctactcagaaggctgaggtgggataatcgcttgagcctgagcag<br>ttgaagctgtagtgagttgtgattgtgccaccacactctggcgacagagtgagaccttgtctggaaaaaaaaaaaaaaaaaagccttttgtttgtctagg<br>ctttgtgtgataggcagggccttacaaaattaaagctgtgtagcctgggcaggttgctttgtttct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	696	384	NA	intron:MAST2:NM:015112:3/29
0	chr1	46679048	46679049	1001628	0	-	1104685508952	NA	NA	SINE	Alu	AluYb8	aggtatttcatgatatttagtactttttaaagtttttgtagagacaaagtctcgctacgttgtccaggctggagtgcagtggcatgatcatagctcactg<br>tagcctcaaactcccaggctcaaactcctcacctcagcctcccagagtgctgtgattacaggcgtaagccattgtgcctggccgtatttagtgtattttt<br>atttagtccctcttgtcctcaactatgctcagtgtcttttaatctagagaccttctgttctattctccatatataaagtcatttgtcacgtaacaatggg<br>gatatgcttagagaaatacaccagcaggaggttttactgccgtgcaaatatgacagggtaaatgcacaaactagatgacattt<font color="green"><u>AAGTATATAAATTTTTT<br></u></font><font color="red">TGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTATATAAATTTTTT</u></font>tttaaaatatggaaaacaaaatgtcccagcacaattactgaatatcaatccctactt<br>gatctgctatgccaatatcaagtgccatatatcatatttgtgtatatgctgtgttataatcttatgaaatcactatggtatatgctgttcatcgaaacat<br>cgtatgttttggtcgtatgatgactgaaacatcatataaatatttgtgtatgtgtacacacttatatacacataaatgtttatatatatgtgcatatata<br>cacacatgataaatgtttatttgacatatgtagtctatcattgatcaaaatgtttatatggtaatcccagcactttgggaagctgaggaggacagatcac<br>tagaggtcaggagatcgagaccatcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C1orf190:NM:001013615:1/2	
0	chr1	100994222	100994223	1001629	0	+	1104685456225	CCTGCATTAGAGTTAAGCAGCA	AGTGACGTAGAAACAGGGTGGT	SINE	Alu	AluYb9	caagcacagggagtttagtttggtttatgctgtttgagggatatctaagagatgtctgataagcagcagaaatggggtgatgactgtacctctgaaattc<br>cacagcagaggcttctaacacatatttggccattgctttcactgaggctcagaaggttgtgcccagtatccagagaaggatttcaaaattttcaaggact<br>atagctgagaaagggttttctggaaattgagagtgccaatttgctgtgaagcagggagaagacaggctatttctgagatacagcaaatagaagtaatttt<br>ttttcaccatcaatgatgacctcagtgacgtagaaacagggtggtagctcctggttttcttgtttcttaatcaatataatttagacttt<font color="green"><u>CATGAAATTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CATGAAATTTT</u></font>acaatatcttagatatttcttagttatgttgtgattttgtcaatgctgcttaactctaatg<br>caggatgataattgtggctaattgcctaaaagcatatgaactttttttcccatcagtgttatatgtgagagaacacacacacacacacacacacacccct<br>ctttaatatgaatttgatgtcctcacttaaattacatgaaataattcctaaatgcttgaaaatacaaaaccctcctcatctagttcctatctcaatcaga<br>caaatattttaaagcagattcaaaaaatagactatactaaacttcttactggaaaaaaagtcacttctggacagagaccaagccaaagtaattttagctc<br>aaattggttttcctggaaaaactggaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	481	143	NA	intergenic
0	chr1	104574482	104574483	1001630	0	-	1104685271869	AATTCAGGTCAAAACCCAGAGA	CTCGTGTCTACAGGCTCCTTTT	SINE	Alu	AluYa5	taattcttttgttgaatgtaacattgtatacctgaccttataaaaataataagtaaaaatatgactcttgtactttcttaatttattttccattgtggac<br>caaacaaacttcaattcatgtgaagattttgtgttaatcacctcagctaataagtctataaataaaattattaaaaagtaatgattttaatatttatatt<br>ttgtaatagctaaaatctgaatgcaaatgtgaagccagagacagaggaccaaaactcttggaaatctctggtacaggtatgaaatgagagctcatgaaga<br>agtattcttgggctcgttactgagggatgcaattcaggtcaaaacccagagagacactctatacccatgatgctttatagttaataa<font color="green"><u>TGTAATTTTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA</font><font color="green"><u>TGTAATTTTT<br>TTT</u></font>agggatcaaaaagcaacaaactacttttaataggagctttgtgtccagggtgcagctggagagtcaaaaggagcctgtagacacgagatcagctcca<br>tatgaattcataaaacagcaccagcatcagccagagactgagtttctaagtcgacacagttatgcttagccaccttcttggtagttaacctgagatagct<br>gtgaggaacacccagtagacaatgattttattcaatagagaggtttttttaaaaaaattaaaaattatgattaaattagttcactgctgaaaaatggaaa<br>tgatataggatcaagtaatgattcataggccatagaaactttatcagtatttgtgtatgtagccaaaatatacaccaaagtaacacacca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	460	158	NA	intergenic
0	chr1	105138651	105138652	1001631	0	-	1104685271665	NA	NA	SINE	Alu	AluYb8	aggagaagaagctatgttaataatggagtatatttggataggtccctgaaaggcaacatagagtaaagaagtcataaaagtaaagaagtcactttgaatc<br>ttgtcaattcatgactgaattaatgtgatccaatccaagcctatctgtcttatgggataaaaagataaatacttttgggggaagttaacaccatccagag<br>aattaaattttctttacagtatttctattgcaatgtctacaatgcaatttaaaaaataatgaagcatacaaggaagcgagggctgatgagatattaatag<br>aaaaaataaaagaaacaatgaaaacagacctataagagatcaaatagtaatcacacatttgacttttaaaaaggtgttattaataatagga<font color="green"><u>CCATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACGAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CCATTTTTT</u></font>cacataactaaaaaaatgaaaaagaattaaatggaaataaagggtttaatagtggataagaggaagctgaag<br>gagtaattgctaacctgtaatatgggtcaaaagaaaattgcctgactgaagcaaatatataaaataatagaaagttagaagaataagacatataagtatg<br>ctgaacaggaaaaacggtgcataattggtgcccaaggaaaagaagaataagtagagaagaacaaatatttcagatgataatgattgagatatttttaaaa<br>ctgatgatatctagccacagattcaagagaatctttgatcttcaagtagaacaaatacaaaacaaaaacaattttaaaaatatacatatataattgtaaa<br>gtctaaaaaccaaaggcaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	105231112	105231113	1001632	0	-	1104685271641	GCTCATGATGTCTAAGCAGTCTC	TGGCATGAGGTACTATGAGGTG	SINE	Alu	AluY	tttttcagtttgatatttctactaaaatttctgtttgactatccagagtacctggtactataaacttgagtctctccgcacagaaagcagatactatttt<br>tgcatacagtaggacaagataaaggtaaaagaggaactagttgagtgtttatgctagatgctgtgttatgtgttttataaacatcatgaactagagagat<br>agctcatgatgtctaagcagtctctgtttctacttatgaggtaatacagaaaaatataacatgctgtttaaaattatggatcatgggaacagacttcctg<br>ggtttaaatcatagctatacttctactactactagtgatgttactgggtttaaatcatagccctgcctctattactaccatgtgacattatt<font color="green"><u>AGTATTTT<br></u></font><font color="red">TCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGA<br>CTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGTATTTT</u></font>gttaccttgataaagtgccttaatttttttttgcttcagtttcatcatttccaacatacaggt<br>ggtaattgcacctataccacaagattaaatcaattaagtgtgtttgtgtggggggatgcattttaaagagggcctgacaaatgcaataggtaagtgtttc<br>ctatgaatattacttttgttttctcttaatgtaagcatacctgtacatacttatccttggttttatttttgtttcacctcatagtacctcatgccagagc<br>tgatttttggagtctttatcaattatttgttctggcttgaaaataaaaactgggttaattcatttcacagtacactgaataagaaaacacctaaggattg<br>ttgtagaataaaggatacctaacagtatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	595	459	NA	intergenic
0	chr1	113390524	113390525	1001633	0	-	1104685712690	NA	NA	SINE	Alu	AluY	agtcgcatcagtcacattatttaaattagcgccaaactttgtcttcagtaactcacttcaagatgcaggcctggctgggtgcggtagctcacgtctgtaa<br>tcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaatcccgtc<font color="green"><u>GCGGTAGCTCACGTCT<br>GTAATCCCAGCACTTTCGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCCGTCTCCACTAAAAAT<br>ACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAG<br>TGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGATGCAGGCCTTTGGCCAG<br>GCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGTGGGCAGATCACGAGGTCAAGAGATAGAGATCATCCTGGCTAACACGGTGAAAC<br>CCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCC<br>AGGAGGCGGAGGTTGCGGTGAGCCGAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCCAGACTCCCTCTCAAAAAAAAAAAAAAAAAAAAAAAAA<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCC<br>GTCTCCACTAAAAATACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG<br>AGGCAGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GCG<br>GTAGCTCACGTCTGTAATCCCAGCACTTTCGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCCGT<br>CTCCACTAAAAATACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCAGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGATGCA<br>GGCCTTTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGTGGGCAGATCACGAGGTCAAGAGATAGAGATCATCCTGGCT<br>AACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCAGGAGGCGGAGGTTGCGGTGAGCCGAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCCAGACTCCCTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</u></font>cccaggaggcggaggttgcggtgagccgagatcacgccactgcattccagcctgggcgacagagccagactccctctcaaaaaaaaa<br>aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatgcaggcttttgtcgcatcaatttcagcaacccgtgtagaggtcgatgaatttcagatttggaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	76856643	76856644	1001634	0	-	1104685762061	AGCTTTTCACACACAGGAACTG	GGCACATTATTTATGCTCCTCA	SINE	Alu	AluYa5	attagaagcttttcacacacaggaactgcctcagtgcaagagctgaaatgactgtcatcataataacaactatattgatcacttaaaagattaataagca<br>ttttgggccaggcgaggtggctcaagcctgtaatcctagcactttgggaggccaagatgggcggatcacgaggtcatgagatcgagaccatcctggctaa<br>cacggtgaaactccatctctactaaaaatacaaaaacattagccttgcgtggtggtgggcgcccgtagtcccagctactcgggaggctgaggcaggagaa<br>tggcgtgatcccgggaggtggagcgtgcagtgagccaagatcgtgccactgcactctagcctgggcgacagtgcgagactccatct<font color="green"><u>GTATTTTTTTTTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>GTATTTTTTTTTTT</u></font>atatatatatataagcattttaataattggaggtaaaatgatttgaggagcataaataatgtgccattttg<br>ttttacatatgaagttatagcattatatttcccatgtaaaaacctaaaacatttctaaccacaaaacaatttacaggttcaacctcttcttgtcttccta<br>gaggacatgtgcaagagaaaacagtttattttctagacaggtttctgttttcttggcacacaaactcctggcactgagagctgtgaggtacacaatggtt<br>tggggctggcaagctctgagcatgtcagttcccagcagccaggctcctctgaatcctgccaaagccaccaagtaacacttagtctttggagccaaaagcc<br>cttgggagcaaacca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	788	460	NA	intron:ST6GALNAC3:NM:152996:2/5
0	chr1	95342702	95342703	1001635	0	+	1104685457522	GGTTGACTTTGCTCTCTTTGCT	AAGTGGTCAGAGAAGAGCCTTG	SINE	Alu	AluYa5	atgatactgtatcatgtctctcaacctgatttctaactttgagttctcgtgccactggacgggtggaaaacttaatttgttattcttgagctatccctcc<br>tcggagttatatgaggtttcaggtgtccctagacattaacagatataggttgcccttgagacatcatcctcccatctttatggccactcaaaccctgctt<br>gggaaataggaatcttttacctatggtcacctatggtcctatctgccttgatgtgctagcactaggtgactacctgtcctggtcacctagaagccccatg<br>tctctggtaccccctcactcccaggcaaaccaggaccctggaagtggtcagagaagagccttgccacttctccaagctgtgtttaa<font color="green"><u>CCCCGACCTTTTTT<br></u></font><font color="red">TGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCTAAGAAAAAGAAAAGAAAAACA</font><font color="green"><u>CCCCGACCTTTTTT</u></font>caga<br>cctggacttcagtcagacccatagactttgttctcttcccagcccagagagtgtcattttctaatgtggggctggaggaaacctgcacactcgcctgctg<br>ctccaaggtgtttggtctatattgggaaactcttttcttcaccttttcccctggtaggtaagggcttaaagagcctaaattttggaaaacaaaagccagt<br>gagaattgaagactggatgtcttcttgcctccactccccacctggccccctaaccttaactgggggaatgagcacagagcccgagtcctgcttgaatggg<br>gaatgtggagagaagagaaaggagaaaatacacaaggcggagaaacagaagcaaagagagcaaagtcaaccatcatacatgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	730	443	NA	intron:SLC44A3:NM:152369:11/14
0	chr1	77634328	77634329	1001636	0	+	1104685761921	CTTCCCCTTTTACCAAGCCTAC	GGAAGGAAAATGTTTGGCCTAT	SINE	Alu	AluYa5	tcatatattatgcatatctacatttaaaaagtagaaaatctatccagttttcttgttcaactatttcctagaacatgagtgtataaattgtatgtataca<br>catttgtgcgtgtgtaaactgtttgatttacatttttcctgcaagacagcaaaatgctaattgttttaacaggaattcttgttggccaacaaggaaggaa<br>aatgtttggcctatattttcctaaaatatgactaaataaacaagtaaaaggttaaacatacatatttaattcaatgagccaacatttttgagtgcctaac<br>accaggctctaggtacttgccagctatatgatacatgagacacaggccctcttagcttacagtctaggaggagatagatatgctttt<font color="green"><u>TTGAAGCAATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>TTGAAGCAATTTT</u></font>agtggtctaggaacacacaggaaattgtgtcttacttttggtaggcttggtaaaaggggaaggattatctaagaagacttcat<br>aaaagaagacttcaaatattaagcgtattcacaatcttttatatttaaaatgaactttcaaagggagaaaatagagtataataccattttttacatttac<br>atttttatttcttatcacatattcataaaaaacactggaagtatattgaaactatagtcactatagtttttccacaattaatacaattactaaaactaat<br>aaacttggaattttaggtcaaatatgaaaaatacacatttactataaaatatatttactgtaaaagaaagttgacacaggaaaactcactataatactct<br>aaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	587	271	NA	intron:PIGK:NM:005482:4/11
0	chr1	84913275	84913276	1001637	0	+	1104685460278	NA	NA	SINE	Alu	AluYb8	catagtattcgaagttctggccagagcaatcacgtaagagaaagaaataaagggtattcaaataggaagagataaagtcaaattgtctctgtttgcagat<br>gacattactgtatatttagaaaaccccatcatctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgc<br>aaaaatcacaagcattcctatacacaaataatagacaaacagagagccaaatcatgagtgaactcccattcacaattgctacaaagataacaaaatacct<br>aggaatacaacttacaagggatgcaaggacctttttaaggagaactacaaactactgctcaaagaaataagagagaacacagacaaatg<font color="green"><u>GAATGTTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAGAAAGAAAAG</font><font color="green"><u>GAATGTTTTTC</u></font>atgctcatggataggaagaagcaataatgtgaaaatggccatactgcccaaagtaatttatagattcagtg<br>ctatcctcatcaagctaccattaactttctttacagaattagaaaaaaaaactactttaaatttcatatggagccaaaagagagcccgtatagccaagac<br>aatcctaagcgaaaagaacaaagctggaggcatcacactacctgacttcaaactctactaattgtctacagtaaccagaacagcatggtactggtaccaa<br>aacagatatatagaccaatggaacagaagagaggcctcagatataataccacacatctacaaccatctgatctttgacaaacctgacaaaaacaagcaac<br>ggggaaaggattccctat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	79582083	79582084	1001638	0	-	1104685761440	NA	NA	SINE	Alu	AluYb9	tgacctttaatgactgaagtgtctcaagcgtcatttctcagatctcatcactttttcatttacattcattagctaagtgatcttatcaagtcctgtagcc<br>ttcaaaacatagtagcaactcataatattatctctggccaggaattaaccctttaacttcaatattaaaatccaattgcacacaatatgtctttatttgg<br>ggaccaaataggcatttcagacttaacatgtccaaaaccattatcttgattcccactatctacctgcttccaaatctttccttctagtcttccccatcta<br>ggtaaaggaccatcacattctaccagtagtcaaggcaaatattttaagatcatctctaactcatctctggaatagaattcctactctataatt<font color="green"><u>GATTTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AA</font><font color="green"><u>GATTTTT</u></font>ttctttaaaaaatataagtatacagaattttcttaattctacttatttttcattacatactcatttatccacaccaaaacttatttattta<br>atcttcaattcatttttaaaaataacatcacaagcactcatgaacctatcattcaatacaaaaagggtactcaatggataatctatgcatcccccagcct<br>tccacaacatccgcctgccactcctaacccaagtaataaccatcaagatgcttcattcactatttccttgctgtaggtttatatatttttaactcatctt<br>tatgtattcctctacattttattagcttcttaaaaacactttcatggtgtatgtacatttatactcaatattatattgctgaaattcatctatgttgttg<br>ca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	93167533	93167534	1001639	0	-	1104685458125	TGGATTGTTGCTTATGCAGGTA	TTCCTCCTTGGTTAGAAAAAGA	SINE	Alu	AluYa5	tgtataggataacatctataacaagcaagcaagagcttttctcaaaaataaatgttttttaatctgcctgtcttgccaattttaggttttttggagaagg<br>aaggtataacttaccatgtattttgaacaacttttttttactttttaggcttactctttagtagatcgtgaggttggttactgtcaaggaagtgctttta<br>tagttggattgttgcttatgcaggtaagttaatataagtattaaatgtccaatgaaattttttattaagttggattggagagtttaaaaagcatctttgt<br>tttattaaatataagtggatatgggtattttttcctaggcataatttgaatacaaatatttagtttgcattttaaaagattaaacatgt<font color="green"><u>TATGTTATTTT<br></u></font><font color="red">ACAGTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTA<br>AAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGACGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>TATGTTATTTT</u></font>cagtaatatcttaccaccaaatgaaatttcaacttcatgatagatacatttttactgtaatattctactaaagc<br>ttgtatctacagtagtttaaaatcttatttgttaacatttaatgaagagtaatctttttctaaccaaggaggaaataattaaagtgttggtaagaaaatc<br>ttatttatattgtacaacatctttagagatttatagagaatttaatttatcatggagctaaaagcttgttatgcatacctcactgcatgccctaaaatag<br>tggtactcagccacttttaccccctagggatataactttgttattgagtgtgcagtgggtttgggtggaatgttttcagaattcgggggtaggataatca<br>tagctttgaagggaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	670	343	NA	intron:EVI5:NM:005665:5/18
0	chr1	181047426	181047427	1001640	0	+	1104685260820	GTTATGAAGGGTTTTTGCTTGG	CACTCTTGCATCTGTGAGAAGG	SINE	Alu	AluY	ttggagcacaagctgtttcctgtctttaaagcctattatctatttcccttccaggtggaggttgggctgcctgctaatttaatcccctgggcttccccct<br>ctgccttcaagatctcacagacgttcaggcttcataaagagggcacttttgtgtcttcctcccctgaaggcctccatctaccatggcagcaaaggagctg<br>ctattttgggaaacagcagcagagttgggagggttgttaattgtttgtcaaacccttccatgggggggcaagaaaaagagcagagcagtgcccttgcctt<br>cactctatttcactcttgcatctgtgagaagggaggggaaaagaggactccttgtccttttcaggcacaggcacccaaactaatt<font color="green"><u>TTTTGTTTTTTTTTT<br></u></font><font color="red">AACAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAA<br>CACGGTGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG<br>AGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAA</font><font color="green"><u>TTTTGTTTTTTTTTT</u></font>tcattcttctacccaatggaaagacataaacaaacataatattgtccaagaagccaatcaaaatagtttaaaaatcatttat<br>aacctcaaaaacaaaacaaaaacagccaagcaaaaacccttcataacagaaatgaaacaccaggggttttgccgtccattctgatcaaaccaccgcagcc<br>aaactgactaagcagatccccaagccccgccaacaccccactgacacacatgaaaacaattctagccaggcacactaacgggataattcaccatgacaca<br>cactcaccccatcacagcacagacaagttcaaaatcaaacagaaaaagtcccagactaagaaaaagctactcgggactgtgacctcagaggcccccatgt<br>gat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	537	220	NA	intergenic
0	chr1	160047686	160047687	1001641	0	-	1104685104224	CCAGGACACAAAAGCATAGACA	CTGGAGGAAGGGAACCTTTTAT	SINE	Alu	AluY	acacaaaagcatagacaagattctagcttttggcttggcacggtggctcgaacctataatcccagcactttgggaggctgaggtgcacggatcgcttgaa<br>cccaggagatggagaccagcctgggcaacatggcgaaaccctgtctctacaaaaaatacaaaattagatgggtgtagtggtatgtgcatgtggtcccagc<br>caccttggaggttgaggtgggaggatcacctgagcctgggagctcaaggctgcagtgagccgtgattgcgccactgcactccagcctggacaacagagtg<br>agaccttgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggacccgtggtgcaaaataggaaaagagct<font color="green"><u>GGCCACAGTAGGCTCTTTTT<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GGCCACAGTAGGCTCTTTTT</u></font>tgtcacttggagaacagggaacaggtgatacttttgggagaaaataaaaggttcccttcctccagcagacacagctctga<br>gctgggtgcaggaattggcaagctgaatgcagttcagtcctcaacttgccccatcagcaggtgcctttgtggcagccctgagatcagccaaactggggag<br>gcttccctggacaagatcatgagacatcttgtgcaaaatctggcaagtggaagaggaagcatgatggggaagacagcagacagttgaggatatgagttta<br>gtggagcagggaggccaatctggttgattgcaaaaatttgtataaattcaagggggatggggctctagaaaactcagagcagaggaaagatatggttgaa<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	760	463	NA	intergenic
0	chr1	165659303	165659304	1001642	0	+	1104685471570	GGTCTGTGGTGACTTTTTGTCA	GATCCAAAAAGCCTCATGTCTC	SINE	Alu	AluYa5	gctcatgcctgtaatcccagcactttggaaggccaaggcaggcggatcacctaaggtcaggagttcgagacgagcctggccaacatggggagactctgtc<br>tctactaaaaatacaaaaaatagccaggcgtggtgtcatgtgcctgtaatcccagctattcaggagtctgaggcaggagaatcgcttgaacccaggaggc<br>ggaggttgcagtgagccaagattgtgccattgcactccagcctgggtgacagagtgagactccatcacaaaaaaaaaataataataaacagaaactagtg<br>ctaaggtattgctatggctgctgcattttgctgtaataaaccatccttctctgtgatccaaaaagcctcatgtctcttgctagaatatatatatgtat<font color="green"><u>TT<br></u></font><font color="red">TCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACA<br>AAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGA<br>GCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TT</u></font>atatacatatattacacataatt<br>gtgtaatttacaactataatatagaatatatgtatattatatagattatatattattctatgtgtataacatagcttatatgtgtataattatgtatatg<br>tatattatatgtgttttatatgtatatgtatgtaatatatacacatatacacacacactcttgaaagcagggaaactctcagacccgtcacagtttctga<br>cgtaacatacttatgacaaaaagtcaccacagacctaccactcagctatccatgattcttattttgatgtattctcttctgaattttctttctataatga<br>acatctggtacttctgatctttaagactataaaaagtttaactatcagagtccagaatcaagatggccgaatagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	581	305	NA	intron:ALDH9A1:NM:000696:2/11
0	chr1	218001844	218001845	1001643	0	-	1104685476127	NA	NA	SINE	Alu	AluYa5	tttgaatttgcattttactgatgattagtaatactgagcatcttttaatgtacctgttgacatttttatatcttctttagagaaatgtctgttcatattc<br>tttgcccactttttaattggcttatttttcttgctgttgagttgtaaatgttctttataaaatctgaatattgacccttatcagatgagtggtttgcaat<br>ttttttccccagtttgtaggttgccttttcatgttgttgattgtttcctttgctgtgcagaagctttttagtttagatttagtttagtttgaagcttttt<br>agtcccattttatttatttttgttttggtagccttttttttttttggtgtgatattcaaaaaatcatttccaatgtcaatat<font color="green"><u>TATAGGTAGAACTTCTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TATAGGTAGAACTTCTTT</u></font>tcctcttctaggatttgtataaattcagatgttacatttaggtctttgatccattttaagttggtttttatgta<br>tggtataaaatagcatccaatttcattcttttgcatttggaaatccagtttccttgcatcatttgtcaaagagactatcagttccccacagtgtcctctt<br>ggtgcccttgtcaaaaattagttgaccacatatgtttcaatttatttctgggttctctattctgttctgttggtctatgtttctgtttttatgctagtac<br>catactgttttgattattgtagttttgtaatataactttaaatcagaaagtatgatgtctctaacattgtttttattcatactgccttgaatattcaggt<br>ttcttttg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SPATA17:NM:138796:9/11	
0	chr1	222870698	222870699	1001644	0	+	1104685475059	GACACATGTGAACTTGTGCTTCT	GAACCACACCCAACCTCAGTAT	SINE	Alu	AluYb8	tttaatatacggagtctcactctgttgcccaggctggtgtgcagtggcacggtctcagcttactgcaacctccgcctcccaggctcaagcgattctcctg<br>cctcagcctctcgagtagctgggattacaggcatccaccaccgcgcccggctaatttctgtatttttattagagacagggtttcaccatgttggccaggc<br>tggtctcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtactgggattacaggcatgagccactgtgcctggctgcaacagttttta<br>atacagaaatcgactgaactatggcaaaatacctccataggcattattcataactattttaaggaaccacacccaacctcagtatt<font color="green"><u>TCCACTCCTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCTTTTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCCACTCCTTTTTT</u></font>cactcatttcagctatagcattaacttctaaaacatttagaatgtattgatatcaaaatcaagc<br>gcttgctactgtaattgtttcacttttcttagaaacagatgactcagaaaaatgattaagaagcacaagttcacatgtgtcagagtatatgtactgacaa<br>ttaagacttgaattattagcactcaaattaactgctcatatccaatatggtataaattggaaaatgctttcattttcaaaatattggctattaattgtca<br>ttgctaggaaaattgacagctcaaaagatcagttaaaggaaaagatggaatagaaatggacgattaaagagctaagttaattttgctaaaacgtattcaa<br>tctatataagaaaaaataggtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	518	183	NA	intron:AIDA:NM:022831:2/10
0	chr1	188832851	188832852	1001645	0	-	1104685258998	NA	NA	SINE	Alu	AluYb8	aattagactgttacaaggtattttatgtaggctcatagtaatcaaaaagcataaacttaaagtatatacacaaaagataaagataaatgaattaaagcat<br>acagaaaatcatcaaatcacaaagaaagaccacaagggaggaagaaaggagcaaatgatttacaaaacacttagaaaacatttagtaaattgacaatagt<br>aagttcttacctatcaataattactttaaatataaatgaaataaattagttagaaaacagaaagtgcctcaatgaataataaaataagatatgtctctat<br>actccctacaggagactcatttagatttaaagacagacataggctgaaattgaagggatatcaaaaagatatcccatgccaatggtaat<font color="green"><u>TCTTCTTTCTT<br></u></font><font color="red">ACACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA<br>GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTTCT<br>TTCTT</u></font>gtggtctatatttacagaagatgaaatagactgtagtcaaaaactatcagaagagatgaggaagattataaaataaaaaggaggttaattgatca<br>acagtataaacaactataaatatatatgcatccaatattatagcactcaaaaaaataaagcaaattgggccaggcacagaggctcacacctgtaatccca<br>gcattttggggtgccaaggcagatgggtcatttgaggtcaggagttcaagaccagcctggtcaacatggtaaaaacccatctccactaaaattacaaaaa<br>aatgagccagcgtggtggcatgtacctgtaatcccacctacttgggaggctgaggcatgagaatcacttgaacccaggaggcggaggttgcagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	189247040	189247041	1001646	0	+	1104685258851	CATAAGGAAATAGTGGCAATGGA	TTTTTCTAATTCGTAGGATGCAAA	SINE	Alu	AluYa8	tgtaaattttatttgtagatgtgattaatgtagagggatttgcataataatcacttttctaaaaatgcatatgcataggtgaaaccactggttgttccta<br>tttaaatacacatacatgatgatatacatttggaatgcaaatataaatattagtaaacttaatagtgatattttatatattatatatacacttcattatt<br>attcatagaaatcaaatacttttgatattttaattcctattggagtaggtttctataatattcatataattaggtttaaaaattgtgtttttctaattcg<br>taggatgcaaataaacattagtccttctgttactggactaatgtgttactgaatgaaattaattttttaaaagatttagagaggttat<font color="green"><u>TGAATATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>TGAATATTTTTT</u></font>aggtagattttgtaaaaacatgtttatttgacttaggttttatgtaatcagaaataagaggatggataataacaaaaaaaaat<br>gagcttttaaatatccattgccactatttccttatggaatgaatatggatacatagtttcattacataaatatagactatctgtgtagactattatattt<br>aaaaatattctatggaacacagaaagtatgagtatttttctgcatacatttttgaaggcacaagtaaaccaattgggggcagatttaaattaaaagaaaa<br>cacaaaaaattagaccccttgaaataatgcattttgttttccaaggctctagcaattttaattactaatatttgatattgactcaattttacactaatca<br>ctatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	549	233	NA	intergenic
0	chr1	196153548	196153549	1001647	0	-	1104685256946	NA	NA	SINE	Alu	AluYb8	ttcttggagactggcttccaacaaatgtggtatttctcattttctccgaagggaagtcgagattacatccctaaagatgatccacactcaactttgcact<br>ggaatatctggtaagaaagattcaaaaaagaagtgaaactaagacgttttaaatatattgggtagatactaaaaaaagaagtaggaactttgaggaaata<br>tattataaaactattttttccataagaaagagtatttcaaatagtctctactaaaaataacgtatggccatgtgcagtggctcactcctgtaatcccagc<br>actttgggagaccgaggcgggtggatcacttgaggtcaggagctcgagaccagcctggccaacatggtgaaaccccatctctac<font color="green"><u>ATATTTTTGTATTTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGTGGATCACTTGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATATTTTTGTATTTTT</u></font>tagccaggtgttgtggcaggcgcctatactcccagctactccagaggctgagtgaagcaggggaat<br>cacttgaaccctggaggcggagtttgcagcgagccgaggtcgcgccactgcactccggcctaggtgacaagagcaaaacaccgtctcaaaaaaaaaaaaa<br>aaaggcatgtatgagtgagtttctcccaaatatataaacatcataaaaccataactgacattttgatggaaaatttcttccactcgagtcatattcactt<br>gtagtaaatcttgatagtgagcttgcactagctttcattccagtgaagctgaaaccaggatttttgtctacactgtgtcttctccccatggtagagagga<br>tagtgtggattcttaggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	197011872	197011873	1001648	0	+	1104685256795	NA	NA	SINE	Alu	AluYa5	atttaaaagttgattcatggacctttaactttcagctatgacagaggagattatatcaaaccagcacttctattaagaaccagaaaatctgaaaaacagg<br>aagcaattcgaggtatcagaaaacctccaaggaacttagtcaaggaagtaaggttctggaaaaagtgtattcaggtgagttcaacatctatgtgaggctg<br>ggcgtggtgactcacacctgtaatcccagcactttgggaggccaaggcgggcggatcatctgaggtcaggagtttgagaccagcctggccaacatggtga<br>aaccccatctctacaaaaaaaaaaaaaaaatagccgggcatggtggcatgcacctgtaatcccagctactcgggaaagctgaggcag<font color="green"><u>TCAAGAGATTCTT<br></u></font><font color="red">CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGC<br>CGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCAAGAGATTCTT</u></font>cctagaaggtgga<br>ggttgcagtgagcagggatcgcaccactgcactccagcctgggcaacaaaaggagactgtctaaaaaaaaaaaaaaattctatgtgccatttttttctct<br>tgaggtgtttgttgactctaagtctgacctgagaggttagatgatagagaatggtaagcttaggcatacagccagcagaacttctgaaaatctcatggag<br>ttgaagatagaaaaatgagaatttcagtaaaccaaagcagccaggacttgaagaataaagaatttagaaggataggaagtgtagagatatgagtttgagg<br>ctctgcaccagcttttccctaaggtactgcttatccttgacttgtatagaggcataggatgagaagccaagcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:F13B:NM:001994:10/12	
0	chr1	232587773	232587774	1001649	0	+	1104685320249	ACACTGGAAGGCAAAACATTCT	GGAGAAAGCCCATGAGTATGAA	SINE	Alu	AluY	tacacatgcttggcttcctctcgatataccaaatcaagtcaatggatggaaactgcatttctagcttctggcacattctttacagtttgcttgccaacag<br>gagatactaaaaaacctcaagataaggctgtgggatcacttttatgtaggcatattgatttcctctttgctccataacaaatgtacacatcatcaactta<br>tgctcctaattaccatgctacatagggatcaatacaaagtcagctccaggttaaaaataagtgcaatttttcacatttcttgtctagccaataattttct<br>gagtctattctctcttctctctcaaaagcatacactggaaggcaaaacattctgtagaccaagaaggtcactgaaaatgtgttagt<font color="green"><u>AAAAATGTGGCATT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AATGTGGCATT</u></font>atcaaactgtaagaataacaagtaattccattagatggcatcctcagaggatcttttattttactgctgtattctaaaaacagtattac<br>ttgtccttttgcactcaccatcgtggacttcctgggatggcttaatcctgtaaaagggacactcattaacttattcatattcatactcatgggctttctc<br>ccctgcttcctgatgcctaaagctaagtttcctaccagaagacttcttggttacagctgccaccacttcctggcttcctgaacatgatcagcaaagaggg<br>ggtgtcctatcttgctcacagttaacagacaccacggtcactgccaagtactgtagtgtatgcactccacaacttcagaggcacccaggaaggcccc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	570	260	NA	intron:SIPA1L2:NM:020808:8/21
0	chr1	245989323	245989324	1001650	0	-	1104685469765	NA	NA	SINE	Alu	AluYa5	tctctatttaaaaaccaaaacaaaacaaaaacaaggaaatcctgtcacatgctacaacatggatgaagcttgcagacactacgctaagtgaagtcagcca<br>caaaaagataaacactatttcattccagttatatgaagtatctaaagcaggcaaattcaacgtaaaaaggtggttgccagagactggagggaggagaaat<br>ggggaattgttcaatgggtatagagtttcagttttgcaagatgaaaaagttctggatgactgttatacaacaatgtgaatatacttaatagtactgaact<br>gtacaccttaaaacctagtggcacaaatacatgatgcatatttttccatttttatttaacaaatacttaattaaatacaacat<font color="green"><u>CCTAGCATCTGCTTTCT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAGAA</font><font color="green"><u>CCTAGCATCTGCTTTCT</u></font>gtactagatgtaggagcagagatagatgattaaggcagaggaggtctttgccttcataggaaggtcgtttagga<br>gaaaatgacgtggagttttcctagagtgacttcaattctagacccagatacgtcattactcaggcagtgaccttgggcaagttacttaattcttctaaac<br>tttagatttctgtagatgtaaaataggaataattagtatctgtctcacagattgtcataggaattaaataaaaatgtatttagaataatgacacatgttc<br>agcatgctcagtgaagttctgttttttgctgtgctcatcaattcctctctcacaggggcttccagactcatggaacaggtaggagaaagccctacccaca<br>acaaagccc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SMYD3:NM:001167740:10/12	
0	chr1	246592343	246592344	1001651	0	-	1104685469552	GCATAGATAACTCTGGGCAACC	CTTCTCAGGCTGTGACTCCTTT	SINE	Alu	AluY	gcgtcctacatttgaaggcctcttaagatgatacttggcagtgctatactgtttttaatggtatctttaataatggcatgtcttacaatccatagcatct<br>tacatttgatgaattttagtaagttataccataaggttatatcttgattccctttcttagagttgtatcacccaagagtatcactggttgcagtggacag<br>tgtggcttctactcaacattctttccaatccagctcattacatggcagttttgcaggtttggtggggtagacttcccttattactgtacctgtggtgggt<br>tcccattggcatagataactctgggcaaccttattccctgtctacggtggttggttctgtggtgggaacaatacctgatctgtcctat<font color="green"><u>GAGTCTCACTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAGTCTCACTTT</u></font>agagcttttgtttggtaggaaggaatgcttgtgctctccccttttatatgagtacagggtagttccaggacccattgg<br>catctataatattcctgagggggagccagactgagctgcaagctagctctggaagagggcagagcagagggaactggagagaaaggagtcacagcctgag<br>aagccatcacgaggcagcagagcatcggcggttaagagcatgggctgtggtgtagattgcatgggtttgaatcagcagttaagagcatgggctgtggtct<br>agatcgcgcgggtttgaatcagcagttaagagtatgggctgtggtctagattgcacgggtttgaatcagcagttaagagcatgggctctggtctagattg<br>cacgggtttg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	595	274	NA	intergenic
0	chr10	29102542	29102543	1001652	0	-	1104685338176	NA	NA	SINE	Alu	AluYa5	tgcccagtgcaacaatgttgagagatgagacctttaagaggtgattaggtcaggagggcactatctacataaatgaattaatgaagttattgcaggagtg<br>ggttagttatctcaagagtggattcctgataaaagaatacatttggatcaccttccctgtcttactctagccctctctcttgtcctatcaactcctgcca<br>tgggatgatgcagcaccaaggctctcaccaaatgctggcaccatgctcttggacttcccagcctccagaactatgagccaaacaaatttctgcttattat<br>aaattacccagtctgtggtgttgttataacaacataaaatggactaaaacaatccctttgtaatttttcatgaggttgcattgaat<font color="green"><u>CTAAATCATCTATT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>CTAAATCATCTATT</u></font>aaaaaaattgacactttcacaatttttattcttaccatccaaaaacatgatatgtgtgctcattccacttttcttttgtcttcc<br>aataaaattttatgtgtttctttacattaggtttatgtctagaatttttctccccacaggtttgaaatgaactttaattagcttttgtctccagaattcc<br>ccatcgatgcctgggctttagggttctcctcaccccctccaatttgaaggtccagactggaaagaagagacacaagaggggacagaagattacctagcac<br>aaagttgcaggggggttgtctccctggcaagagatcccagggcccaatgcctctccagcccagccacaagtactcagagtgtcagaacatatttttgtaa<br>tg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	29146320	29146321	1001653	0	-	1104685338139	GCTGGAAAACTGAGTTCCGTAG	ACCAAAGGACCCTCAGGTTAAT	SINE	Alu	AluYa5	gctacttgggaggctgaggcacgagaattgagaatcacttgaacctaacaggtggaggttgcagtcagccgagatcgtgccactgtactccagcctaggt<br>gacagagcaagactccatctcaaagagaaaaaaaagacacatggttgatgtctagtgggggtatgtgataattcttttccatatcctcttcccccttctt<br>gtccaagcttcaagtcagcagttttgatgagaagatttagtgggagtctgacagagttcttcttcaaagaagtgtgatgtgaggccaccaagtgagatca<br>aggagggaaggtgggtgagcatgcccactgagcacacaggagcaacctagtccagcctaggggaggctggaaaactgagttccg<font color="green"><u>TTCCTCCTCCTTCTCT<br></u></font><font color="red">AGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG<br>TAGTGGCGGGCGCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCA<br>CTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTCCTCCTCCTTCTCT</u></font>tggggaaatactggaaga<br>tgctaagcagggaagtgacaggatctgactagaggcagagaagaagcggggtgggcatggacagtaggttgctgggggaaagagactggaacaaaagaga<br>ccaagtgggaggctgagagtttaatggacatgggaggtgaggcaggcctggaataaaggtgtggtgatggagagaagtgggcagatttcagaaatactta<br>gaagaaggggccaaaaagatgcacttgaatcaaaaacacatttatttataattttcttaaacaaacatgacttcattttgaactgctgggtagctatgtt<br>atcaaatatattaacctgagggtcctttggtaagtctgatggtactcccaggcactggtttgtaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	666	385	NA	intergenic
0	chr10	30018774	30018775	1001654	0	-	1104685337813	NA	NA	SINE	Alu	AluY	gcctcccaagtagctgggactacaggtgtgcaccaccacgcccagctaatttaaaaaaaattatagagaaatgttgcccaggctggtctcgagctccctg<br>ggctcaagtgatccttctgcctcagcctctctaaatgctgggattataggtgagagaaacagtgcccagccatcatgttacgtttctaagtcttgtctct<br>caagagcaattgccaccttttt<font color="green"><u>AAAAACACAAAAAGTAGCTGGGTGTGGTGGCACGCACCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCGGGAGAACCG<br>CTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCGTTGCACTCCAGCCTGGGTGGCAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAA<br></u></font><font color="red">TTTT</font><font color="green"><u>AAAAACACAAAAAGTAGCTGGGTGTGGTGGCACGCACCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCGGGAGAACCGCTTGAACCCAGGAGGCAG<br>AGGTTGCAGTGAGCCGAGATTGCACCGTTGCACTCCAGCCTGGGTGGCAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAA</u></font>agagatggggtttcactc<br>tgttggccaggctggtcttgaactcctgacctcatgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgcacccggccaat<br>tgccaacttttaaacacatacatccctctgtcttgccacacacaccacatacatacacacacacacacacacacacacacacacacacacacacacacct<br>ccat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SVIL:NM:003174:1/36	
0	chr10	39082810	39082811	1001655	0	-	1104685024089	NA	NA	SINE	Alu	AluYb8	caacaaaattgaatcgaaccaactggaaacgagtggaattgaatggaatggaatggaattaaatggactagaatggaatggactgggatggaatggaatg<br>gaaaaaaatggaatggaacggattggaatcatgcggaacgtaatggaatggaatgaaatggactcgaatggaatggagtcgaatggaatggaattgaata<br>caatggaatcgaacgtaattgaattcaatggaatcaaaaggaatagaatggaatggagtgtaatggacagatatcgaatggaatggaatggaaaggactc<br>gaatggaatggactggaatttaacagacatgactggaaagtactggagtggaatggactcgaatgcaaagaaaatgaatggaat<font color="green"><u>CCATTCCATTCTTTTC<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGTAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>CCATTCCATTCTTTTC</u></font>aaaggaatagtatggaatggaagtgtatggaatggaatggtctcgaatggaatggactcaaatggaatagaatagaa<br>tgcaatggtatcgcatggaatggaaaggaagcaagcgcagtggaaagatatcgaatgtaatggaatggacttcaatggaatggactggattggaattttc<br>tcgaatggaaaggactggagtggaatggactcgaatggaatgaaaacgaatggaatggaatggaaaggaaaggaaaagaatggaatggaatcagatggaa<br>aggaatggaatagaatggagtcaaatggaatagaatccaatggaatggcttcgaatggaaaggaatggaatggaatggaatggaatgaaatggaatgaag<br>tcgaatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	14537789	14537790	1001656	0	+	1104685342284	NA	NA	SINE	Alu	AluYa5	gacttcattatgatcatccctttgagatgttgctggatttggtttggcaatatattgcctagaattcttgcattcatgatcctaagtgtggtcagccagt<br>aattttcctgtcttctactatccttggtaggttttggcatcaagattttggaagcctcaaattgaggtgaggagtgtttcctctcctgctgtactcaaga<br>atagtttgtgaaaaattggaattattttttctggactttctggtagaacctgcctttgaaactacctttgcctagacttttaagattgtttttgacttct<br>gttcgatctctttgaagcatatattatgtttttaaattttgggtttgtaatgttatatttactccctgactacaaattatctcatat<font color="green"><u>GAAAATTTTTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAATTTTTTTT</u></font>ttagcagctaaaagaacaccacaggagagccttaagcttcaagcttttgaatgtagaatttttgttcaggagaatcacaggagcgatg<br>agctagctctgtccagaattgaaagcaggtgatgaccaaaaaaagaaagaagccagagaacaaggaagatagtttccaatgttattgattgtataaatct<br>cagttcatcatcccaaagaaaaaaagatttcatgctccacctacctaactcatctaccaaaaagagagaatcgcccatcactaggctcttctttttaact<br>tacttctgggcaacgcaaccccttttttcttctctgcatttatttgattttaaattgcatgagcaatttacattaatatttctctgtagcattcacagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	20205258	20205259	1001657	0	-	1104685340647	AAAAAGTCCCCTTCCAGGTT	GGAAATTATGTGGAGGGAGTTG	SINE	Alu	AluY	gagttcactgcagctctaccactgtgtagctcagtgagatttgtctctggacttgagttgcttggtatgttaaatggtgataataataataataaataat<br>catttcctaaagtgtgacaattgttttatatagtacatagcttagcatagtgcctataaataattgttggctaccattaccattgtaatttttatttgag<br>tatttttgagactttgattgcttatgtatccatatgtattttgaaaaaagaaaaaaagtccccttccaggttggggcacgatggctcacacctgtaattc<br>cagcacttttggaggctaaggtgggcggatcacctgaggtcaggagttcaagaccagtttggccaacgtggcgaaaccccatctctac<font color="green"><u>TGTATTTTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGTGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>TGTATTTTTTTT</u></font>aaaatgagccaggcgtggtgaggtgcccctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaatctggaggc<br>agaagttgcagtgagccatgatcctgtcatgagccatgatcctgtcactgtactccagcctaggtgacagagtgagactccattaaaaaaaaaaaaaaaa<br>acaaaacacaactccctccacataatttccccgtaaatattttatctacgttgatgcggctcacattcttacccacagagcatttccaagtcagatgtac<br>tttgtactttctaggatgcaagagaggtacacatgaaagcaccacccggctgttaggcttgagctgagatagagggaagggaaaaataagctctctattc<br>ctaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	678	362	NA	intron:PLXDC2:NM:032812:1/14
0	chr10	71308748	71308749	1001658	0	+	1104685137674	NA	NA	SINE	Alu	AluY	aagagagcctggtggtcttgctgagttgaggatacaaagaagagaattcaggaggttgaggcagctagggtttgcacgtagtggaaagatttttacagag<br>aaagtttcagaaacatgcatagagctcccttgagttcccatgaagctaactaaaaaaaaaatccagggaaaggacaattacttgggagaagtaagataaa<br>aagattcttagagttcacacaggttggggaatcatttgaggttctactaaccaggatggagacgcattgctataatatgtgaggcatttatatatttgat<br>gaaagattctagaagggtcatatttcaatggtggggctaacctagctctagagtgaaggttactgtagtcccattttttaagagct<font color="green"><u>AAAAACAAGCTTTA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAACAAGCTTTA</u></font>aaaagattatagttgtcttttaatggcctccaggacaaaatgcaacccctctttaatggaatacaataaaatcaa<br>gcactcaatgatgtaaatttgcattacccagcatctaatcaagaatgactagaaatacacagaattagaaatatgttacccataattagatgtggatgct<br>aaagcaactccatcttggatgctaatctgccatgttgacttctgattaaccctgttctgggaaggcctgtaagatttctactttatctactgttatcata<br>catgttgcccagaggtcaaaacaaccttgataataaattcttctctcaggcagactaacacagcattcttgcctttccctgaggagttgaattcaactgt<br>cttatacactc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	73662007	73662008	1001659	0	-	1104685145815	NA	NA	SINE	Alu	AluYa5	ctgcctcagtctctctctctttaaacaggaaccacatggattgcaaaggcaaagttatgaaatatatacaatatgaccctatagtgtaaaactat<font color="green"><u>GTGGC<br>TCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGCAGATAACCTGAGGTCGAGAGTTCAAGACCAGCCTGGCCAATATGGCAAAACGCCATCTC<br>TACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCACATCTGTAGTCCCAGCTACTCAGGAGGCCACGGCAGGAGCATCACTTGAACCCAGGAGGTAG<br>AGGCTGCAGTGAGCCGAGATCACATCACTGAGCTCCAGCCTGGGTGACAGAACGAGACTCTGTCTCAAAAAATAATAATAATAATTAAAAATAAAAATTG<br></u></font><font color="red">CCGCGCCCGGCC</font><font color="green"><u>GTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGCAGATAACCTGAGGTCGAGAGTTCAAGACCAGCCTGGCCAATA<br>TGGCAAAACGCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCACATCTGTAGTCCCAGCTACTCAGGAGGCCACGGCAGGAGCATCAC<br>TTGAACCCAGGAGGTAGAGGCTGCAGTGAGCCGAGATCACATCACTGAGCTCCAGCCTGGGTGACAGAACGAGACTCTGTCTCAAAAAATAATAATAATA<br>ATTAAAAATAAAAATTG</u></font>gcacctagcacttgaaccagggaggcagaggctgcagtgatccgagatggcaccattgcactccaacctgggcaacagagcaa<br>gaatccatctca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	66837069	66837070	1001660	0	-	1104685136157	NA	NA	SINE	Alu	AluYa5	acttatacaaaaacatatgtatcaacactgtttataacagccctacattggaaaaagttcaaataattttcaaaactagattggacaaaaaactatgata<br>tatcctcccggtagagtactgcacagcaataagaaagaactgctgacacattcagcaacatgaatggatttcacagttatcatgctatgtaaaagaaggc<br>agatacatagaagtatattccatatcattatattaattttaaaattccaaaggcagcacatttgataaaaaaattgtaaaagttatgagaatagttctac<br>ttggaggagcccaagagtttttggagtgttaggtatattctataacttgatatagatgatggattacatggctgtatatatgtgt<font color="green"><u>AAAAAAACTCATTGA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAACTCATTGA</u></font>atttaatgaaagtgattgtatattaactacatgtaaatcaaatgagttttttctcatgattattactcatagttttaattcccaca<br>aacaaaaacatttgttgaggaagtttccttaaatttcctagagttgtgttttctgtttcaacattaaaattttttgtctttcttaggtgataatgctgca<br>gataaatcttcttcagtgactctgcaatgcaatctgtcatgattatcatttaagtaaagaccaagaagtaaaaatccatcttcaagcaccaagtcaacaa<br>aattaaagatcttagtacatatgcttaagcaaaggtagattttggaaagaattcacagttgaaaatctctgagactgctatcaagcaacatacgcaaag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	56902378	56902379	1001661	0	-	1104685133375	TGGACAGCAACATAGATGGGTA	GGACCAACTGAGAAAAATGCTT	SINE	Alu	AluYa5	acccataagccaatcatctcccaccaggcctctcctctgtcatgtggggattacaattggaaatgagacttgggtagggacgcagagccaaatcgtatca<br>ctcactttgcatttattccttctcatttatttcttcactccatctctcaaatttcttatcctgctcccctagtcacaaaagactttgcatgacagctacc<br>caaaagaaggcaagatacttctcagagggttgaaaaataagagacttgagtctgctgaacctgagttttattcagtggaccaactgagaaaaatgcttgg<br>aaatattctcaggttaatattaaattatccatctttttagagatatatctacataggagtacaaatatatttatg<font color="green"><u>AAAATATATAAAAATAACTGTAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAATATAT<br>AAAAATAACTGTAGTA</u></font>atgcaaaaaactatagatacacacaatctatgtacctataaaattgtatcattacaattacattgctgtttaaaatatctgtga<br>atgagaatacctgaaaatatatttaacttatatgtgcatatatacccatctatgttgctgtccatctatttatccatttatagctatatctgaatctaca<br>tccatattaacaattttggtaggaaaacttatactctatatttgataaagttaacagtataattatatttttgtttacttttcagccaatctaaactatt<br>aatgttatcattttctagtgatggtcctgggtcattgccagactcaatagttttgttctttttttctataataagatgataaaaccattag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	588	273	NA	intergenic
0	chr10	62124857	62124858	1001662	0	+	1104685134792	GCCATTTTCCCTCATCTTGTAT	ATCTTCAAAGCATGGGGATCTA	SINE	Alu	AluYb8	tggacgtaatttgttagaaaaataagacaatatagccatagagctactagtaaactgtttcctaatgtaatgagaaaataaggtaacaatttttaatgtg<br>gacaatttacaaaactgtaagtaaatggggaagaactgtatgttttaaacaaataacaaaaaaaaaaggaaacataaattcagagacattttctatattt<br>ccaaagggtaaagacaacatccaccttttgtggatttttttttgagaacaaatacccccaaattaccacacacttaaatgtgaaatacttgtgtaataca<br>tttcaaggaatgaaaaacacagactttaaattccaagtcaaggctttggctattatttgccattttccctcatcttgtatggtgcc<font color="green"><u>AAAAAATAGATGCT<br></u></font><font color="red">TCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAG<br>CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATAGATGCT</u></font>aaaatatttatt<br>gaaaaaaggaaagaatagaaaatgagatgagggaaatgaaaaacttcttatattagcaagatattctttataaagatcttttagccttttctgttacaga<br>gatatcattcaatgtaaaagatacataagttgctaaatgatattcaagaaatcaaaaactataaaaaatactttcttatgaagttatagatccccatgct<br>ttgaagattactcccaaattccactttaaattctattaatccaaatctgataacacctatcaccattttccttgagcagttttcatgtttgttgtaaaat<br>aaatctctaaaacaataaagggcaatcaatctgctcttaaaagggaaaattgaattatatgatattgcatgaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	550	263	NA	intron:ANK3:NM:020987:1/44
0	chr10	58902214	58902215	1001663	0	+	1104685133884	GGAAAAGGAAGCATAATCACCA	CATTTCAGTATCCCTTTCTTCCA	SINE	Alu	AluYd8	gttacaaaggcttaaggactaattatatagagcaatgaaaagaatttcaacttctgaaactaatctggaaaatctataaacattttcttctctccgtcta<br>aactacgtctaatatattgagatgtaatattaaaaatgtgttattaataattgtttcatctgcagtatgaagattattcagccagggctgcaaacagcag<br>acacatgctgaaaagtgcctttggagaatagaatttgtcattgaatatggatgtcaggaaagaatctgggcaaaagcaattggattggaaaaggaagcat<br>aatcaccaaaataagtaaagtatattttactggaaagcccaatctacttgagattccgctataaatatctcatttataactcata<font color="green"><u>GAAAAAGAAATTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGAATGAACCCAGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCCTCTCAAAAAACAAAACAAAACAAAACAAAACAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAAGAAATTATG</u></font>tagtggaagaaagggatactgaaatgtttatggcaaaattttcagtatatctttatcaagacatt<br>cattttgactgacagctaattttatgtataaaattatttataatatcagcttaaagtaactggaagtgtagcactctttctaaaactgtttatctggata<br>ttataggtttttttcaacaatataattttaatctggtacaaagactcctcaaaaaattatccctctgatatttatgtaagtcaattagtcctttgataat<br>gttatttatatttacacacacacacacacacacaggcacacacacacatacacatgcatacgtatttatttagcaagagtttatgctcagcacttaatga<br>aggtttgaatattgagacag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	141	NA	intergenic
0	chr10	64460009	64460010	1001664	0	-	1104685135401	NA	NA	SINE	Alu	AluYb8	tttatgatacatatggggacatatattttttataatagaaacaagtgttaattaatctatacccttctctagaccaagacaagaacctttacttctcttt<br>gcttttcctacactttcaatgttcatataatccagaatgctacttctaaattactatgaccttttaaataaataaattgctagttctttaaaataaatac<br>ttatttaaaattaatttactgtattatttgtttataagtgtttcttacatcccactcctttcttttgtgttcattgtcctttggatgaaatatattttgt<br>agtatttctttagaaaatcatctgtgggtgctaaactttctgaggcttgaatatatgaggatattttcatttattttctttctt<font color="green"><u>AAAAAGCCATTTGGTG<br></u></font><font color="red">AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAAGCCATTTGGTG</u></font>ggaaatataggcacactgctccattgtatctagcactgctactgagaaatcagatgttagtctgaatttgttc<br>ttctatcagtaatatgtcttttcataggtaacttttagtattttctctgtgttcttgaggttctgaaacttcactctgtctgtaggttgagtttaaaaga<br>atatccttttggatacttggacacttaggggttgtggtggtggcactcactcaatctgagagttcttgtctttctttggttctggaaggttcttggcaat<br>aatttcctcaaatattgctttgctttcattctctctattgtcttcttagaacagtaaactaccaattaacaccctttaattctatgtgttcttgttacca<br>tttattttact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	54805970	54805971	1001665	0	-	1104685132629	GAAAGCAAGAAGGGAAATACGG	ACATTTCCTCTCTTCCCTCACA	SINE	Alu	AluY	acattggtaaggctgataacatgaattttttataaacaaatacataatacgtgtttttactaaagattgattgcaaagtttaaaagcaataaaaatactt<br>tacattaacatatctgtacaaatatcaaggggtttattaatattgcataatattttctaagggtctaaggtcaggaaacctgtgctattatatttgaagg<br>gaagtgttcctaagtgcaaagtcaagcggattttattttctccagttgttcagtggatcatgccatgttttattttacttcttaatgacttgggtaatga<br>cttaactgtacatttcctctcttccctcacaagtcgccaatggccttttattttcttcttgctgacaagaacaaatgattgtatt<font color="green"><u>AAATTCTTGAAAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AATTCTTGAAAGTG</u></font>cacatcccttaatatatctattgcccccaaatccccttttttgatgtttagattaacgatgaaataactattctcttgctagttat<br>atattgtactctcactataatctgagaatttccacttatttctctgctgaatcaagataactatttcctagaatccgtatttcccttcttgctttctacc<br>ttgtattgctggaattcatcctcagttcctgccttagaaaatacgtgagttacattttctgaaaccttaaagttgctttgttaagtctttatatttgatt<br>aatatgtttatgaatatataattttaggtttaaaattattttcccatattactttgaagggattactaccactaaattctggtatcctacactgtgaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	587	274	NA	intergenic
0	chr10	69994906	69994907	1001666	0	+	1104685137059	CACTTCCCAGTCAGACAAGTCA	TTGTTCCAGTCACTCATTCCAG	SINE	Alu	AluYb8 	accacaccggctaattttgcatttttagtagacacggggtttcaccatgttggccaggctggtctcgaactcttgtcctcaggtgatccacccgcctcag<br>cctcccaaagtgctggaattacaggcgtgagccaccgcgctcagccttcatttattttacagaggagaaggagactgagatctagagactgaacattgta<br>ctaaaaggcactgagcaatttaatgattagattaaggcaagaagtcaaatctcctgcatcccttcattttagaggctttaaaattagaagatcagttaat<br>acaagcccctcattttgcaatgggccaactgatatctaccagtcacttcccagtcagacaagtcactaataaaattttcaggaa<font color="green"><u>AGAATTAGCAATTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGAATTAGCAATTTTG</u></font>tgcataaaggacagcatcagttattttataaccctagtgtctagcacactagacactagaaaataataagt<br>agtcagtaaataacctggaatgagtgactggaacaataaactaggtaaatgatagatgcgggccagaatgaacacattcctagtgaataacccagacaat<br>gattcatgttccctcacctgtagggaacgggagctagctgcacattttgaatgcagaatgacttcttaaaaaacaggctgggtgcagtggctcacaccat<br>catttcagcacaggaatttcagaccagcctatgcagcatagtaagaccctgtctctacagaaataaaattaattagctgggagtaatggagaatgcctgt<br>agtaccagttact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	493	165	NA	intergenic
0	chr10	100306912	100306913	1001667	0	+	1104685167744	NA	NA	SINE	Alu	AluYa5/8	atgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactcaagagcttctgcacagcaaaagaaactaccatca<br>gagtgaacagccaacctacagaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaattta<br>caagaaaaaaacaaacaaccctatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaa<br>tgctcatcatcactggccatcagagaaatgcaaatcaaaaccccaatgagataccatctcacaccagttagaatggcaatcatt<font color="green"><u>TGTTTCCTGACTTTTT<br></u></font><font color="red">TACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCG<br>AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGTTTCCTGACTTTTT</u></font>caggtgctggagaggatgtggagaaataggaacactttt<br>acactgttggtgggactgtcaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatc<br>ccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttatggcgccattattcacaatagcaaagactt<br>ggaaccaacccaaatgtccaacaatgatagattggactaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcat<br>gtcctttgtagggacatggatgaaattggaaatcatcattctcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:HPSE2:NM:021828:9/12	
0	chr10	115250287	115250288	1001668	0	+	1104685662367	AGGTAGCAGGCATCTCATGATT	AGGACATGACTGTGGGCTTTAT	SINE	Alu	AluYb8	acttcatggaaaatatttcaggatgaactttgccaattataactaagccaataaatacaattacattaaatgtagtcatattcctgctcctttgagccta<br>gctaattttacattataaaagcatttgatgagaacactttgtatttaggtaacatctttcatccccaagtctccaggatctacttgagagatgattggca<br>agtaaattccccaatgcagaggtccctcctctggtggaatggtgagtctctaacagaagaaggaaatttgctgacactggagtcactggctaactattga<br>agatggtatcaaagctaatcagcagacagaagagccagtctggaggacatgactgtgggctttatatttctgtgaattaattt<font color="green"><u>TTCCTTTTATTTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>TTCCTTTTATTTTTCTT</u></font>agttatttcttgttctctttgtggtgctctaagaatttcacatttaatcatgagatgcctgctacc<br>tccaggccccactcatgcctaagaagtgccccaaattactttgcattagatgctggttccaagttcagcagggaaccagaaatgttagatgcacataaaa<br>gttgggcatagggaggaggtgagaagggccagctttgagttcccttctacttggcaggtgtcttctttttctcttattttcaaacaaagtttattatttc<br>ctcctctatgagaagaatatattcttattatagaaaatttggcaaaaatagaaatgcaagaagcaaagaaactcccatgatccaaagagaatcactatta<br>acaatttgatgtatttc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	458	125	NA	intergenic
0	chr10	124736005	124736006	1001669	0	+	1104685659352	NA	NA	SINE	Alu	AluY	gatacaaggtcaagacataaaaatcaaccactttcttaattccagcaatgaacaagtgaaatttcaaattagaaacacaataccattacatgaacacccc<br>ccaaaatgaaatacttaaatttaaaacttctttttattgggtataaaatttttaaaatatgcatgaaatctatatgatgaaaactacaaaactctgttga<br>aagaaataaactaaaatatttcatgttcatgaatagaaataatattgtcaagatgtcatttcttcccaacttgatctatagattcaacacagtctcaacc<br>ccagcaagctgttttgtggatatcaacaaagtgattctaaagtttatgtggcaaggcaaaggatctaggctagccagcacaatatt<font color="green"><u>TTTGCTCCTTCTTT<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTACACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>TTTGCTCCTTCTTT</u></font>ctagaagactgacagtagccaactgcaagacttactataaagctataataataaagatagtgtcatattggcaaaagaat<br>agacaaatagatcaatgaacagaatagagagcccacataaatacagtcaactgatctttgacaaaggagcaaaggcaatgctatggacaaaaaaatagtc<br>ttttcaacaactggtgctgaaactagatatctacacacagactttacctccttcacaagaattaactcaaaatggatcatagaacaaaatgtaaatccca<br>aaactataagactacaggataacagagaatctagaagactgggcttggtgatgatatttttgataaaacaccaaaggtatgatgcatgaaagaagtcatt<br>ggtaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	105817215	105817216	1001670	0	+	1104685664564	AGTCAGATGCAGACCAATGCTA	CTTTTCCCTCCAGATTCTCTGA	SINE	Alu	AluYb8	gcaggagccgcaggggcaccaggctggcgctggtccccaagggccgccgccagcgccaccaacaccgccacctcctccactgccaccaccaccactgctg<br>ctgtagctgtggatatctgtgaaagagacagggaaaatgaagcaaatgcaggcagctcctgccttttccctccagattctctgacttttggtgactttct<br>ggcctgagtgactacgactgggggcttttaagttcctgtgctgttccacccaggacagggctggctcctggactgagcacagggcctgactggtgctgac<br>cagaagtctggcaatcctggctccagctgtgtgaacctgagaaggtcacttcacctttgtttccgtttttataacatggggtt<font color="green"><u>GAAGGAGGCAATCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAACCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAGGAGGCAATCTTTT</u></font>tggg<br>aaggttgttgaatgaaataggacaaggaatgtaaaatagtagaggagttagcagcacagcacgaggcttaaacatctttattttgaatatagcattggtc<br>tgcatctgactgggcccaaacctagagcgttcccatctccatgcctcagttcacacagtgctttctttaatccttacagtgcctagaattatactcagct<br>cttcaggggtgcctagtgaattaaaacaatgttttttgtaatgaaaagtgtttttagttccctaaaatggggtggtaggacttgacctgcttctatcaca<br>cggcggtggaaggaaatgaggaaaggctaaggggctggaggcgtgcatggcttagtctcttcttgagctgctgtgtaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	549	354	NA	intron:COL17A1:NM:000494:16/56
0	chr10	108991285	108991286	1001671	0	-	1104685663805	GTGGTGGCCTATTCAAAAAGAG	CTGGAGAATCCAGTGTAGGACA	SINE	Alu	AluYa5	cattagaccatgagctctcaggatagagagtgacatattcatcattatcctacacatattttagagggtgaataaatgtatgttgaaatgcgttgaaaga<br>agagatgctgtctatacaccctgtgtgactgccgattgtccttctctctagctcattctgtccctcctctccttctccctctctgtctctacctctatat<br>gtatgtataccacacacatgcacacacacaattttaacctgttgtttcttctgagaaaaataaattaatcctgactgttccatctgcaccagctctctag<br>tggtggcctattcaaaaagaggattaaaaggacacctccaaaggagggactttcatcagttatttttaactaaactgaggttct<font color="green"><u>GCATATTACACATTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGAAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>GCATATTACACATTTT</u></font>acttatcacagtgttaatcaaaggggtgtgaaaaaatgaaaatagagattgcgtgtatgtgtcctacactggattct<br>ccagaaacagaccctgagaggaggatttgtgtgcatgtgatttattaagagcatgctcccaggagaaatcaggaagaaagcaagggataacagcatgtca<br>gggaagaggagaaagccaggaaaagatgtgatgattggcaaaacaaacaaacaaaaaaaacaaaaaaaaaaaatcagactgatctcattgggcactccgg<br>aatagaaatctacaactcaaggtttgccccactttcaggcaaaggagttgagatttcattgacctttcagtcagtggctaagagatgccagtcagataaa<br>agtttcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	505	183	NA	intergenic
0	chr11	10637494	10637495	1001672	0	+	1104685630353	NA	NA	SINE	Alu	AluYb8	gatagactggattaagaaaatgtggcacatatacaccatggaatactatgcacccataaaaaaggatgagttcatgtcctttgtagggacatggatgaag<br>ctggaaaccatcattctcagcaaactatcgcagggacaaaaaaccaaacaccgcatgttctcactcataggcgggaattgaacaatgagaacacttggac<br>acaggaaggggaacatcacacaccggggcctgtggtggggtccgggggatgggggagggatagcattagtagatatacctaatgtaaatgacgagttaat<br>gggtgcagcacaccaacatggcacatgtatacatatgtaacaaacttgcacgttgtgcacatgtaccttagaacttaaagtataataat<font color="green"><u>TACTTTTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTCCAGTCCGCAGTCCGGCCTGGGGGACAGAGCGAGATTCCGTTTCAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TACTTTTTTTT</u></font>attactaagtgaaaaaagcaaggtttggaacaccttgtataatatactatcatttatgtttaaaaaatccacttttggctg<br>ggcgcggtggctctcgcctgtaatctcagccctttgggaggccgaggcgggcggatcacgaggtcaggacatcgagaccatcctggctaacgtggtgaaa<br>ccctagctctactaaaaatacaaaaaattagcccggcgtggtggcgagcgcctgtagtcccggccgaggaaggagagcggcgtgaatccgggaggtggag<br>cttgcagtgagctgagatggcaccactgcactccagcctgggtgacagtgagactccatctcaaaaaaaaaaaaaaaagaaaaatccacttttacatata<br>tgtctata	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MRVI1:NM:130385:9/20	
0	chr11	23522805	23522852	1001673	0	+	1104685626775	ATCTGATTGCTTTTTCGCTGA	CTTTTGAGCTGCATTCCAGAC	SINE	Alu	AluYb8	tcaaatatgccatttgaagttttttcagatcacatttgaaattctacttcactctatttctgttgctttcatgaaatttgaaagtaatggaaggtgtcat<br>catttcattttccctccactagtagcaactaggtgtgagtttgttccatgacagactttagtttcattcacttgaaataggtcccaaagtttcattccca<br>tggtttgtgttgccttgaagtttagctgctgtgcttttgagctgcattccagactacaaatattgagatttctattctttccatgtattgccttgtggga<br>tttatcacagggatacttcagcacttcaactcccaaataaggaagtatttattgtcacttttttgtccatttgatattctatttttaattgtaat<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAACC</font><font color="green"><u>NNNNN</u></font>ctagggtttatgttagacctcagctattcagcgaaaaagcaatcagatgaaaataggttatacatct<br>ttgaaagaaattgattacacagactttttttgttccaataacataacttgacttgattagcacgctgatacttttgaagtatggagaggaagtaaagctg<br>ttataatggatggaaaagaaacacactgaggctaagcgacatccctaaagccaccatgaaatatgatccagaagctgaaattctgacacagacaaggaat<br>tccaatttactgcacattgtaattccataatttctcagtatcaatttttaagttaaatataagaaccaggtttataataggaaatgtattagttaatggg<br>gagaaaataaggattaataagatgtagc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	548	220	NA	intergenic
0	chr11	25140819	25140820	1001674	0	-	1104685626238	TCCAAACACTGAGAACTCCAAA	CAGGCATTCTGATATCACTGGA	SINE	Alu	AluYa5	aagcactgtgcaccatcttgtagatgaaatttctgttaactcagcagattgtactttcattccccatgttttgaacaacggttcaggatatcgactgaga<br>agtagcctttgtcctggattttacttccaatctctctcatccaaatgtaaactcacaggcccagttttctagagttctgtgcagttatagatggaatcaa<br>tatgataaaagtaaatggtataaaggaaatggctcaagcatttctttcatggaaatcatggctaggtcagtaagatattggatatagtccaaacactgag<br>aactccaaactcatgctataaagtgaatcaatgcaggtataggtgtgattacaatttgggattagagattttgagatcagtgtt<font color="green"><u>ACCATAGCCATACTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>ACCATAGCCATACTTT</u></font>atcagagaaggtcaaagtcgagaaactaaaggaaggggaagaatttagaaatcatatgaatcaccaaatgcat<br>aaattgtcattcagataaatatggaaagctcaaattaggtggaagattttaaaaatttatgcttccagtgatatcagaatgcctgagattattacctacc<br>tctttgtatctaatattttctcatgaaaagttaactaatttcatcaaaccatcaaaacatgaagtctgatgctattcgtattatcaacactgtacaaaca<br>aagttattaaggcttagagagttcatctaacttataaagaccacaaacctaataagccttggaacctagattcaaatgcaaaaataccagcttcattgca<br>cttaaccactc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	598	271	NA	intergenic
0	chr11	5885149	5885150	1001675	0	+	1104685273005	NA	NA	SINE	Alu	AluY	aaaaaaagcctacctgatcatggtatatgaacctttcaaagtgcctctgaatttggtttgctaatcttttgttgaggatttttgcatttatgtccataag<br>aaatatagccctgaagttttttgttgttgttgttgtctctgccaggttttgggatcaggctgatgctggcttcatagaatgagttagagaggagaccctt<br>ctccttgatttttttggatagcttcagtagaattggtatcagttattctagggatgtctagtagaatttggctgtaaatccatctggtccaggacttttt<br>tttttattggtagtttctttactactgattcaatttcagaagatgctatttgtctattcaggattttaatctcttactgattcattt<font color="green"><u>AAGAGATTGTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGATTGTGTG</u></font>cttcccaaaatttaaacatttcctccagattttctcatttgtgtgaacagaattgttcatagtagtgtctgaagatct<br>tttgtatttctgtgagatcagttgtaacaccacctttgtcatttctgattgcgcctatttagatcctctctttttgtttgttaatctagctggggtctat<br>caatcttatttttttgaagaaccaagtattgatttcattaacattgtgtatatatttttgcatctaaatttcattaaggtcttttcttactttattttct<br>tctgctagctttggggttggtgtattcttttttttctagttcctttaggtgcaaagttagtttgttaatttgagatctttctaccttcttgatgaagtta<br>tatggggct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	126873827	126873828	1001676	0	+	1104685335585	GATAAAATAGATTTGCCCCCAAT	GCAGCCAAATAAAAAGATCTGG	SINE	Alu	AluYa5	gagtgtcccatttttccacgtacagtctgtcatggcttcccttggttaggaaagggaaatcccccaaccccttgtgcttcccaggtgagctgatgccccg<br>ccctgcttcagctcaccctcagtgggctgcacccactgtccaaccagtcccagtgagatgaaccaggtacctcagttggaaatgcacaaatcacctgtct<br>tctgcgttgatcacgctgggagctgcagaccggagttgtttctattctgccatcttggaacggaaaaagcatgcacattttttagtgttttgttttggga<br>ttctttttgatcaaattttatttcatgttgctaaggctatatttttctcttctttttttccagataaaatagatttgcccccaatta<font color="green"><u>AAAAGAAATACTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAAATACTT</u></font>actcaatgtaaataatttaggtaagaaaaagaaaattaccgggcacattcactacatataactactgctaacatttttccttccagacttt<br>ttcctatatgcttacacacacacacacacacacacacacacacacacactcacttctaacttacttcccttaacgtatcatgagtgtcttcctaataatt<br>taatagaggaccagatctttttatttggctgcacagcatgccatggtatggagatatacttcatgaaaaaccaagtttagacatttttaaggttcttcac<br>tcattttcccaaaacactttctaacagcttagatcaataatcctcactcccacaatcaatgtgtgatgattcttctcaagaccaatgacaaccatt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	570	274	NA	intergenic
0	chr10	134288545	134288546	1001677	0	-	1104685041655	NA	NA	SINE	Alu	AluYb8	aattataaatgaaataatgtgcaacattattacatttgtacatctcaaagaaaggggcaattttccaggaaaatgtggttttccaaaaattgtctcaaaa<br>ggaaacctgaacactttaagagatgaataaccactgaatgaactgaaagggttttgccaaagaattatttccatacgtgatgccagaccagtacaacttt<br>ataggtgggttagttcaaacttttaaggaacagagctccaatgccatatacattgaaaattcatagaaatatttggaaagctccccacttaattttatga<br>acctagtataactttgatattaaaacttggcaaagatagtatcacaagacgaattataatataatctcaattacgaatgtagatat<font color="green"><u>AAGAATTCCAAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCCAAATA</u></font>attcttaaatgtaaattcagtcaccattttaaataaagaatatatcaaattcacagaatttattccttga<br>aggcaaggatgaattaatattataaaatctaataacttaattatatcaataggttaaatgagaaatataatcatttgattgtcaatagataacaaaaagg<br>catttgataatgtttgatatccattaaccttaattttaatcaaaaccataattaatgttaaaatttgaactgtgcggcaaggcttataaccaaatgctgt<br>agccccttacctaatctgtctgacttctagaaagttcttcctcttcagaggccaccactttcagctctttgcagaaattttttcaggtatttacctacat<br>atttctaaataacaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	3267810	3267811	1001678	0	-	1104685306922	NA	NA	SINE	Alu	AluYa5/8	tgttaagtatgaaaatgctgaaaaaatatacactgtgtaaaacaaaataaaaacttaagacctcctgttctcagccaaagccattcattctaaagaaaac<br>ctgaaacataagttgaggccatgatgacagtggatggtcagacatgcctcatgccttcctccctttggaattcaggcacagctgtccaaattccattgtt<br>tggaccagcattcacattaaaacagagaccttaaggcccacaaaacagattctgtagccataagataccaacatgagatagcagaccctgatagaaatca<br>aagtattttaccccttatcttaacccaggcatccctgtctattgattccaggtctttagataataactcttttaaccaattgccaat<font color="green"><u>TCAAAGATTTTCT<br></u></font><font color="red">AGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCAAAGATTTTCT</u></font>atccacctatgacctggaagcctcttcttcaagttgtcctgcctttccagattg<br>aaccaatgtacatcttacatgtactgattgatgtcttctgtctccctaaaatgtataaaatcaagctgtagcccagccaccctaagcacatgttcttggg<br>atctcctgaggctgtgtcgtgggccattggtcacttatatttgactcagaataaatctgttaaaatattttacagagtttgactcttctcattgacagta<br>attggcaccctacccgtggggtctcagagacgactcagaatcccagaggagttgtctgaacccagagctaaggtaccagcaggggcccattgaaatctct<br>cccaatctcgaacttctcctccagtggaactgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	41530249	41530250	1001679	0	+	1104685621693	CATGCCAAGTGGTGAAAAAGTA	TAATCTGTTTCCCCTCTCCAAA	SINE	Alu	AluYb8	atgtccaagctcaaggttgttggggtgaggatgagaatcccaattctatggaagaggaaaagggaaatatttgctgaatcataatatggtctaccacaag<br>tgagatgttgctctattgaaaacctgattattaaacaatcaaatcagtgtttggaaaaagtttgattctttgcttgaaattcctggcttgccacatgcta<br>aaaacatcaaactggatttctggcctattctaaggatagtaaagagacagggaccaggagagagaaaaaaatagctttcaaaggggaagtgcaacccaag<br>aaagataatctgtttcccctctccaaagctaagaaatggaggagacctttaggagacaaataagtaaagtgagataaatcttacgg<font color="green"><u>ATTAGTCTTTCTTT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA<br>TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATTAGTCTTTCTTT</u></font>tttt<br>attgaccaatataatgtccatgtttgtgaacatacccagacatgtctgcaacagggagaagagcacgagaaaggcatagtaaagatgagagttttaaaga<br>aggagcctactttttcaccacttggcatgacaagttacctagatctccagctagctagagtttgcactgcactactcctacccacaacgaaggggcatct<br>tttggattagaagactgaaacaagaggtttgaagaatcaccaattggattcaaggatgaggagaattagagaagaagaagctgatcagtcagatatttta<br>tgccaagggactgagtagggagagatcaccagggagttatgcaaaagagccaacaaataaaccctcatgtaggagtgagtag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	524	229	NA	intergenic
0	chr11	47806656	47806657	1001680	0	-	1104685620058	NA	NA	SINE	Alu	AluY	ttgttcccatttagctatattattgattcagttgttaatttctaaagttttccttgtaaggctgggcatggtgactcctgcctgtaatcccaacacttag<br>ggaggacaaggtcagaggatcactttagctctggagtttaataccagcgtggacaacatagcaagtccttgtctctacaaaacataaacaaaattagctg<br>ggcatagtggtgcatgcctgtattcccagctatttaggaagctgaaatgggagaatctggggctgaggctgcagtgagctgagatcacaccactccactc<br>tagcctgggtgacagagcaagaccctgtctgaaaaaaaagttttccttgtaaatacatgctttgaatggtactctaaatagctat<font color="green"><u>GAGTTTCAGATTCTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACA<br>GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>GAGTTTCAGATTCTT</u></font>attagtc<br>atttttgtttttttcaagtgctacagatgaagcatggcgactattatccacttacctggagaggtacaaagtccagaataacttgtatcaccactgtgta<br>atcaacaagctcttgtctcatggagtgcctctgcctaattggcttataaacagttacaaggtaaacggattataacttgtacagagtaagaacccactct<br>ttatcattctggataacttcatgagatgattaaaaatatggactgattgcagtggctcatacctgtcatgcccgcacattggtaggccaacaggggagga<br>tggcttgagcccaggagtttgagaccagcttgggcaacacagggagaccccatctctatttaaatttaaaaatatata	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NUP160:NM:015231:32/36	
0	chr11	56303363	56303364	1001681	0	+	1104685161116	GCCCTAATTATGAAGGCAAAAG	TTCTGAGTTTGAAAAGGGCTTG	SINE	Alu	AluYg6	tggttagaataaagaagttaaattgtaaaatctactgggtaaaataatttggacctcaaaattgttgtagttgagttagttcacggtatttaatccaggt<br>gttgggaagtaatattttatggaaaacctggtgaatgtgtaacttagcaaaatgttatttatttgccaacctatgaaaacaaacagaataaagatcaaaa<br>tattttgcctaccttttttttcccttttaccaagtatccaatcctcacttagctaggacatataaatataagatgtaacctgtacatgtgatcaaatagt<br>acatgtatttgccctaattatgaaggcaaaagagatacatgaatgcttcattggaagcacatttttccaatgatataccgaaa<font color="green"><u>AAAAACTTTTACTATAG<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTA<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAACTTTTACTATAG</u></font>tctacacctaaatcagcattatctgtcactgtctccctcattccctggtatagccatactggtcttgggtcaagccctttt<br>caaactcagaaccttcacagagccgttttttaaccttttttttttttttttttttttaggttcaggggtatatgtgaaggtttttgatacagttaaactc<br>acgtcatgggggtttgttgtacagattatttcatcacccacatactaagcctagtaccaaacagttattttttctgatcctttccctactcccatcttcc<br>atcttcaagtaggccccagtgtctgttgttctcccctttgtgtccatgtgttttcattatttagctcccatttacgtcttcttttgaaaagtatctattc<br>at	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	501	183	NA	intergenic
0	chr11	57774121	57774122	1001682	0	+	1104685161532	CTTTAAACAGCCATCCAGGAAC	GGGAACACTTTTGACTCCTTTG	SINE	Alu	AluYa5/8	aaaggcaagggctgaagataatatagcaatgtcttttttatatttttggccttaactatgccaatctaattagaattcactgtatttaaaatggttcctt<br>ttacttattgaaacacattttagtgtggtttatgtgtaatatcaaatgaagattatttaactcttctcacattttatagatgatctataaagtcagatgt<br>ctttaacatagtagcaagttaaacttcactcttgaattcttactatctaagtcagactacattataatttaagattgtctttaaacagccatccaggaac<br>ataaaactgtagaactactgtgtatttgtgattgggaatagtgcttttgccaacttataaggattagagtagaggagatatacacaaatt<font color="green"><u>AAAAATTATG<br></u></font><font color="red">GCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTC<br>TCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTATG</u></font>tgtgatcataagacttaagataattaaaaacaaaatcacagatcaaaataacaaaaaacaaaaaa<br>acctactgagagccagatcaagatggagtagtaagttcaagaactgcctccactctagaaacataggcctactgaataaagtaaaaagagaaaacagaag<br>gtggcatagtcaggcccaactacaagacaagcgcttttgaagatccaggctggcacagaaacacaaactgtgatcagggctgcaaggcttggtggacttg<br>ctgggttttggatgcagtggcagtcagtggtggcaaaggagtcaaaagtgttccctgagagatgggaaagcagaggcaggttctcagccacggaggccca<br>gggctaaggtgagattcatgtctca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	577	433	NA	intergenic
0	chr11	25605140	25605141	1001683	0	+	1104685626086	TGCTCTTCAGAATTTTGTGCTC	ACAAGAGAGTGAATGGCAGGAT	SINE	Alu	AluYb8	aaaaataaaaaaaaaatacacagacacatggatgtactgtttttctcagcggaaaaaaaaaaaatgcattcctatggactgatggaagcctttagatgtt<br>gagaaaaaaacattgaagatctcaagataaccctcacccatgacactctaactctgcaattaaaattcaccctatagcatttttctttttttcaagtagt<br>tattcaccttctttgtcctcaaattcttaaaaaaataagtatgagaaagcacaatttttccacaagagagtgaatggcaggatagatgagaagcgatgta<br>atgaaatgcggcttcaaacaaggagtatttttaaagtaatcataataccaagagattataaagattacatttcaaaaatagattt<font color="green"><u>AACTAAGTTCCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTTCAAAAAAAA</font><font color="green"><u>AACTAAGTT<br>CCTTTT</u></font>attatgagcacaaaattctgaagagcatacattatgaaattaaactcacctgaaattcattactttcttgagtcctcaaatgtcatcttcctaa<br>agacagggtttgtttcttattagatctatgtaaataacgtggtatgtaggcagagagaaactaaaactgccttttcatttctggctgctgatgagttacc<br>gctgtgcttgcatgacatttacaagccacgttagtgaggtcaccctcactatactagattctcttttatacattattgccctggataattgtgttggaaa<br>ttgccatcaaatgccttttctgctatgacactaaataatttgacattattaaaacaatgctggtgccaagcaacatgcatcagagtgtaga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	472	167	NA	intergenic
0	chr11	37706296	37706297	1001684	0	+	1104685622841	NA	NA	SINE	Alu	AluYa5	aattgaaaaacacattaacaagaccattcactatgatgaagtaggattcatctcaggtatgcaagcatggttcaacatatgcaaatcaataaacatgata<br>catcatattaataaaatcaagacaaaactatatgaccatttcaagagatgatgaaaaagcatttgaaaaaattcaacatcccttcataagaacaactttg<br>ggtatagaagaaatatatctcaaaacaataaaaggtatataacatacctacagaatataaaatgggaataaattgaaagcatttcctttaaaacttgaaa<br>aaaggcaaggatgccaatttttgccactttaattcaacatagtaagtactggaagccctgaccaatgcaattaagaaac<font color="green"><u>GGATGCCTTTCATTTCTTTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>GGATGC<br>CTTTCATTTCTTTTT</u></font>aatgggaaagaaaatgataaacttatctttgttttataataatataaaacataatattatatttataaaaaatctacatacacca<br>ctaaaaactgttagaactcataaatgaattttgtaaacttgtaaaataaaaaatcaatgcacaaaatcagtagcatttatgcatttatatattccaacag<br>tgagtaattgggaaaaaatatcaataaagcaaccacatttactgtatctacaaaataatttcataagaataaattttaaaaaaagaagtgaaagaactct<br>agaaaggatattgtaaaatgctgaaaaatgatgattaaagagattgaaggggatacacacaaaaaattgaaagatattccatggttaaggattg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	32892057	32892058	1001685	0	+	1104685624168	NA	NA	SINE	Alu	AluYb8	nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccagctactcaggaagctgagacaggagaatcacttgaacccag<br>gaggcggaggttgcattgagccaagatcgcaccactgcactccagcctgggtgacagagcgagactccatctcaaaaaaaaaaaataataataataataa<br>taataaactaataaacacatagaaaccaaaacaaatgtaacactcccaaactcattcctgaaaaggggcactgcagaaatgttatt<font color="green"><u>AAGATAAGATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAGAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAAGATTCTT</u></font>caccaaatgatacacaagcaacccatgctatgtccaaatgacacaaaagctcaaatagcatagacag<br>aggattccccgtgtgtgccctggtttgacttacccagtcttggggcccatcaactcccttggataccacttgcaccaccaaagtgttacaggctgctgat<br>tccatgaaggggacagaagagagggtccccaagacaaaagatttctcagttgctgctaggacactcctggaatcccagccacagaggcagctagccatga<br>gcagcaactagcactcataagcggttgctgctctgcctgataacatgaacaggtaagccctggtgcactgctgcagccaattgctccatccatggaaacc<br>aggcaggctagaccaccag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	33624794	33624795	1001686	0	+	1104685623883	NA	NA	SINE	Alu	AluYa5	ttctcttcaaaagcctagaggaattgtacaaatctgaataaaagtttttttgaaagagtgaaaaataactatagcttgtacaattcccaaggtgtcattt<br>tcctgtcccattaatgctatgctgcccaccttaccccgttcagtttggggagtgagggtgtcaccatccagaagtgataaaaatgctaagtgccatctct<br>tcaccctctgatgggttgagggatagcatgactttaacttctgcatggttacctgttctgcaggtactaacagcatctccttttccaagtcagggaaatt<br>gagtcattcatttcttcactcacaaccaatctttattgaaggccaactatatgtgagacactgttaaaagcaataggcattagtcttta<font color="green"><u>GCCCATCTTTT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAACAAAAAACAAACAAACAAACAAACA</font><font color="green"><u>GCCCATCTTTT</u></font>agaatggagcttctagtctagggaaaggggtgagggtacactgtaaatcagtataa<br>catatcagtagtggtaaccattgtgaagaaaatagaacagggtaatgaaggggggattagattgttggttaaggaaagtcatttttaagctgcaacttga<br>aaagcaagagagaactgggcatatagagatctgggaaaagggcattctgagcagagggaatagctagtgcaaaattcctgagatgggaacaagcctgatg<br>tgttcaagaaggccactgtgggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttc<br>gagaccagcctggccaacatggtgaaaccccgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C11orf41:NM:012194:12/20	
0	chr11	40494019	40494020	1001687	0	+	1104685621969	NA	NA	SINE	Alu	AluYa5	ggcagatcatgatcctggctaacatggtgaaaccctgtctctactaaaaaaaatacaaaaaattagctggtcgtggttgcgcatgcctgtagtcccagct<br>acttgggaggctgaggcaggagactggcgtgaacctgggaggcggagcttgcaatgagccgagattgtcccactgcactccagcctgggtgacagagtga<br>gactctgtctcaaaataaataaataaataaaagaaactcactcaaaaccgcacaactacatggaaagtgaagaacctgctcctgaatgactactgggtaa<br>ataatgaaattaagacagaaataaataagttctttgaaaccaatgagaacaaagacacaaggtaccagaatctctgggacacagct<font color="green"><u>CTAAACACTTCTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>CTAAACACTTCTTT</u></font>gggaaatttatagcactaaatgcccacaggagaaagcaggaaagatttaaaatcaacaccctaacatcacaattaaaagaactaga<br>gaagcaaaagcaaacaaattcaaaaactagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacacaaataacccctcaaaaa<br>atcaatgaatccaggagctggttttttgaaaagattaacaaaatagaccactagccagactcataaagaagaaaagagagtataatcaaatagacacaat<br>aaaaatgataaaagggatatcaacactgatcccacagaaatacaaaccaccatcagagaatactataaacacctctacacaaataaactagaaaatctag<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	92608492	92608493	1001688	0	+	1104685402465	NA	NA	SINE	Alu	AluY	ggatcactgtgatccttcagagaatgaaagtgatttaaaaacactaaagcattagattacttagtatcattatggctactaatgaatgataataatcatt<br>attgatatttttgaaagtattaataatagggctaataccaggataatgagattataaataatattttgtgagaacaggttaattttcataaacaagcctt<br>ttcacagaggctgaacaatagatatcactcttctttcactaaaaaaaaaatctgaccacttttaaaaaattccaattgcttttccctctcattgtgttaa<br>cataaaactcctccgaatttaaagttctaaaagcaagacttcttccaaaaggctctgcctcctatgccccaagggtttgcaatcat<font color="green"><u>CTGTCTAGGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>C<br>TGTCTAGGATCTT</u></font>ttgctgctctttctgataaacagaatgggtaatgaagtgtggttgttagaaatacagttcaggactgcaggagccagacttcctggg<br>ttcaaatccacacccactttgtgaccatgacaaagcaatcagcttctctgtacctcagctgcctcttctatagcgtgcttctaaatggagtttttctgtc<br>tttgtatcccgagtgcttgccacagtccctattccaggggtgtgctggtaaaccagttctctaaaaataaaagccctgatttgtagcatttgctgatgac<br>tgcagtgtaagtacttccaccatggctgatgtcaggctacccgtggtttaacaactgacctgccaaattcctgaatatttaacagttacctcttgggac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAT3:NM:001008781:21/25	
0	chr11	102348327	102348328	1001689	0	-	1104685399739	NA	NA	SINE	Alu	AluYa5	gaaagctgaccttgtgaaggtgctggggtctagggagattgttatttaagctttcctttctcataagtctaggacagctgtttttccaatgcccttgttt<br>tttacaatatctgcaaacatctgaagacaaagctctgtggttggggagaaaggtgagtgggttttgagttttccctggagttatgattttgtttttgtaa<br>agaatcaattttcaaagcaagtactattgactttaatccgtttttcctcttattttcctgcaagttatttttaaagaattgcatagctccttctataata<br>acattcagagaatgacctgtccagccaatgacactattttggatttgcctctttgtatcagggtgatttctaaccaaggcagaatt<font color="green"><u>CATGAACAATTTTT<br></u></font><font color="red">GAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CATGAACAATTTTT</u></font>tcctagggcttcagaatttaatgcagtgaacctttcaaaagtttgtataaatcattccatataggccttaagatgt<br>tcccctttcttctgagtacataattcaaccctagaccacttcaccttagaggaaaaggcctctaatattgtccctatcaggccccataactcagccattt<br>cctggtcaattgtaggaggacctgggagaagttctggccacttattccctctagaggtaagacattcatttgggggctttctggaatgtctgataaccac<br>agtataatcatgggtgtaaagaacaccccttagtagccagtggaggttcctatgaatggggttataaatggccactaatctttctaactcctctctaaat<br>ttgataggct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	99729424	99729425	1001690	0	-	1104685400480	TCTATTTTATGAGCAAAGCCTTTTT	TCAATGTTTCCCTATCCTCCA	SINE	Alu	AluYb8	tcaggtaaagaaagataaatgtttgtttcatctccatttaactatgctactttgagcaagttggttacctccttcaggcacagtttcctaatgttcaaaa<br>tgtttagaaatgtaaataatgcctaatttgtaggattttttgaagttcaaaatgaaggtaaatgcaaaacattcacctgagtgtctagaacataataatc<br>acttaataaatcttagcaattattattagcattgtcattaatgtttaaatttaatctaaatgtctgacatttttaaaaattgtgcaagttggtaataata<br>ttttattgtagcttctattttatgagcaaagcctttttttttcatttctaaaatgaggtaaatcaattaaaatatttttataacatct<font color="green"><u>AAGTTATTTCTT<br></u></font><font color="red">TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTATTTCTT</u></font>caaaaaaactctagaaaacaaaatatcactaaattagatgaataaaacttctgccacagaatac<br>tttctaaaggcaagcacatttattctatttttcatgagggttttaaataaatggaggatagggaaacattgatagctttttcaactgttagtattcttat<br>aatggaatttagaaaatagaggtcaagttactaggcctgcttgcatattggtgcacagagacatagagattttgtttaataaacatcctagttccatacc<br>agacattatacaattttttattttggtaatttaatgactgttcaaaaattccatgaattataatttaaataagtctgtaatggttgtgatttcttaggtg<br>gatgatttactatgtttatgaaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	559	223	NA	intron:CNTN5:NM:014361:6/25
0	chr11	106170481	106170482	1001691	0	+	1104685398648	NA	NA	SINE	Alu	AluYa5	ctggtagcttgactgcagttggagtagccaggatcacccagtcctagggccctttcacttaggcaaccattgatcctctggggagccttctttccaaatc<br>ttaagaaggacttggtctcctggttgacctttagaggagattgtccctcttttatagaagttgatggtactttattcccaaaatgtaatattgctttctg<br>aatctgatccacattgataataccatatgttttgactcatttctcagtccagtaaaatgtcagtagtgaggaggagcctcctgtaatccatttcaaatgg<br>actgggttttaagttgctctttggggcagtgtgaatctgaaagagtgcaataggaaatagccttatccaggtttgctatgtttctt<font color="green"><u>GGCAAAGTTATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GGCAAAGTTATTTC</u></font>aagttcttttaagggtatgattcatcctttctacctttcctcaggattggggatgccaacag<br>tcatgtatttataatctattcccaggacttccaaaaagctttgagtgattttagctatgaaacagggtctattgtttccctggagtgactttggaagacc<br>gaattgaggaattacttcttttagactttcgcaagtatcagtggccttttcagactgggttggatatgctttgacccagccagtaaaagtgtccatgaaa<br>atgagaaggtatttctatcccaaaagagagggcacctgggtaatatttctttgctagtcttccacagggtaggttccctggtgttggactggcttgacta<br>gggcaagaggaaccagttgagtct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	100781394	100781395	1001692	0	+	1104685400238	AAAGCACTTTTCCTTGCAACTC	TTCCTTAAGCAGCGCTTATTTC	SINE	Alu	AluYb8	cggcagcaactatgatactaaaaacagtactatgctttatatagggtcatttatcttctaggacatccccttctacctcacttctcatcttttttccatc<br>gagattattattttattgtgattttattttaaatgattacttaattgaaatgcacatactgtggactgacagaaaacatcccattacagtatgaagtctc<br>tatttttttaaaataatgccatatcaataagaaaacagtgatcatgaacagcatttaggaacaattcatgggttattttccccttccttaagcagcgctt<br>atttcagagaaaattcttagtttcatgtccacaacaagtaacacaagagacaagaggtagctatatggggttacattactaagtccaaat<font color="green"><u>GCCAAGTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>GCCAAGTCTT</u></font>tacatgagcagtaaatcatggcttttggaggagatgtgagttgcaaggaaaagtgctttttgttttctagagc<br>atgcttccctagattatagttgtccctcatgtggcctagtcttttatctcagctctttaattttatgcttaaactgagtgtgcttttgttacctacatca<br>ttggaacccttgagatctttttttctggcctggtggtgtgaaggggcctggtttgaataagagtccaggaagtggttctcagaatgatttttgtattgcc<br>agaaatgctgatgtattggctccaaattaacatttccaaaaatgtcaccctacacaaactgaaaacaaagatacaagtgtcgtcaccacagctgtgcact<br>ctcctcctgaaaccagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	503	177	NA	intron:FLJ32810:NM:152432:4/24
0	chr11	72320923	72320924	1001693	0	+	1104685115866	NA	NA	SINE	Alu	AluYa5	gaacagctgggccacccctggcaactataggaggagaaggagacgtcagccttgactgtctcacagccttcccatcccaggaacagaactcgtccttgca<br>gagccggaacggagacaaaagtccctgcttctcgctctattaacttggccagagccatggggatcaaagagaaaggtaacagaacaaaggaaacgagggc<br>caaggcaagatcgtgactcataccagccaccagccatgccctcccgcaagcccttggaagtcctttcagatgtcttcccagtggaaggttgggtctgtgt<br>tcagaaagcaaagtgattaactgcaagatgaaggagacatggctgggtccccattcatgtgaacatgatatgaggttgagggtctt<font color="green"><u>AACTGTGGTCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AACTGTGGTCTTTT</u></font>agcatgagcccacagtgtaagcatgactggcaagaaataaaaatgctcaaactgcaggccatattaatagaggtctgttaacccaa<br>ttgggaagatgacagttcccccacttttatagtctagttagaccatcccctgttcattgtgtcccaggggctgacaagatgacactcatccagaggaggc<br>gacctatgaaacgagggaattggaaaccaagttttgcatgtgactaagactggataacccagggatgcctcatctaaagcagaggagacccagggttatc<br>agtctccaactccaatctctcagaccctcctagatgggggatctgaactctgtggccccatggacagcctggggacccataggatttcacaggaggctgg<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	67422790	67446833	1001694	0	-	1104685201356	NA	NA	SINE	Alu	AluY	tagacaaagctagtcatcatttcaaattatttatctgttaattacctttatatagctggatgtcaggcaactatcataaaagtaagaacctttaaggccg<br>gatgc<font color="green"><u>TTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTC<br>ACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTTTTTTTTTTTTAGTAGAG<br>ATGGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGCGTGAGCCAC<br></u></font><font color="red">AGTAAGAACCTGGCCGGGCGCG</font><font color="green"><u>TTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAG<br>CTCTGCCTCCCGGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTT<br>TTTTTTTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGA<br>TTACAGGCGTGAGCCAC</u></font>agtaagaacctttaagttacatttcagaaggcacaccattcccatcaaaccaacaattttagactagttccattcaccaaaag<br>attactgtcatgtgaacttgaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	73562794	73562795	1001695	0	-	1104685115523	GCAACTGTATACCACACAACTGG	GTTGGTTCCTCTTTCAGCACTT	SINE	Alu	AluYa5	accaagtattaatgtacattttggcataagttcctgacatcttctcggaatggtactttgagaagcactactctaaattactatgttactctgcctcttt<br>gagctgtaattgcagtttatctttcacattatgttataattatgtttctcggtatgtatgtacatgcatgtatgtgtgcattcactgtgtgtgtgtgtgt<br>gtgtgtgtgtgtgtatgttccctgaaactaggaggttccccttaatatctcccagaatgtctaatgcagtgctcaccacatagcaagaagaggctcaatc<br>aatagtttttgaattaattcattaaaaggactttcattaatttagcaactgtataccacacaactggattgtatagtgatatt<font color="green"><u>AAGAATGACAGGTTCTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATGACAGGTTCTT</u></font>tcaatcatgactgaatgtctcccatatggcaggccttgtagtgggtgctaaagaaacaaagaacacagtccccatccagaagga<br>atgcactgtcagagggaaaaggaactgccacatgaatagatcattcgagcccagagcactaagtgacatgaggtatgtgtcaagtgctgaaagaggaacc<br>aactctctggggcatcagaaagagataaagcacatttttagaactgaagtactgtcagctatgagagctaaagtcacagcttattatcaaatctcctaaa<br>gaacatcttttagcacagttgcactctaatgtataaaggtttaaaagttcaaatttggctgaaggacttaaaataagaccctatgtaactgaaaatact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	559	244	NA	intron:MRPL48:NM:016055:5/8
0	chr11	88908953	88908954	1001696	0	-	1104685066352	TGGGTCTGCATTACTTGTAACC	AAAAATAGACGGGACAGCAGAC	SINE	Alu	AluYa5	tatttaagaaaaaaaaaagtcacggctcatccaaacaacttttttgagacagaacaggctttgcaggtacatggagcagtgtgtgggtgaagaggaagag<br>aagtttccatggaaatgctgcctctggctggaatcaggaagtcatcacatgatctccacaaggaggcttaatcttttctctctctctttctttcagagcc<br>acaaagagattaacacaagacttcttgtccctggggagccttgggtctgcattacttgtaaccacatgtggcatttcataattcttttctatgttctcga<br>agacagaattcaacttatcatgttcaatttaattaagaattttgccttacacttgccccactatcaggcttccagtgaaataact<font color="green"><u>TGATGAAGACTTTCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>TGATGAAGACTTTCT</u></font>tgctctttaagggcttttgtgtctgctgtcccgtctatttttcataatctttagagcctgcttagaggaat<br>tactaaaatgtacttagtcctattaatttcctttacagggttgattttcttaaataggacagacctctttatttgtccccagtataggccactgtctcct<br>ctggcctacacgtgttgtagtcttcagtcttattgccagtcttgggttcctaaatattaaatcccatttagagtgctttcttcctgactctagatgtaca<br>ttctttaggtatcttcagttgtgggatttgaaagggtcctatcctattttgggagattattgtatgacctgacatgaaattactgcaatgctctataaag<br>tagaattaggggtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	530	202	NA	intergenic
0	chr11	126915319	126915320	1001697	0	+	1104685188557	NA	NA	SINE	Alu	AluYb8	atagactaaggagactaaagacaatgacatgcaatagatgattttttttactggattctggatcagaaaaagagttataaagaacattattaagacaatt<br>agaaaaatgtatatatagacagtattttaggtaatactattgtaataatatcttgggaagtaaatgtcttggtaatgcaaaaaacatcatacttgtgtag<br>gataataccctagttcttagaaaatttaagatatctgtaactaattttcaaatggtttagcaaaaatattcaattgagggagacacacacacacacacac<br>acacacaaacagatcaaaacattagcaatgaaggagaaagaaaaatgagttttcaccatattttcaactttctgcaggttttaaaatttt<font color="green"><u>AAAATAAAAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTAGTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAATAAAATAAAATAAATAAAAAAAAATAA</font><font color="green"><u>AAAATAAAAA</u></font>cttggggaaaatatgataaactggcattagtttataaattatg<br>tcattatcctgcatctaaattggaattccttccctttcagttcatccctttccccacatctcagcatcatatagcaagagttgcatggggcctcatggcc<br>cagtggggcccaggctcgaacaaatttgcggagaagttttgcagcctgctgccacctctgggctctgctgctgcacaaacagggactattcgtggaagct<br>gtttggctcatcactgaacctaagtgtctggggagcttcagggcctcagtggcctaaggcttcgtgagcccttctgcttagagagttaatgcctgagact<br>aaaatctggggtaacgggacagatttctgctcagcagcaaaagctgc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	42453190	42453191	1001698	0	-	1104685188721	NA	NA	SINE	Alu	AluYb8	aaatggataaattcctcgacacatacaccctcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggagctgaaattgtggcaat<br>aatcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaggtacaaggaggaactggtaccattccttctgaaa<br>ctattccaatcaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaagccaggcagagacacaaccaaaaaag<br>agacttttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatc<font color="green"><u>AAAAAGCTTATCCACCA<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAA<br>ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTTATCCACCA</u></font>gatcaagtgg<br>gcttcatccctgggatgcaaagctggttcaatatacgcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccatgtgattatctc<br>aatagatgcagaaaaggcctttgacaaaattcaacaatgcttcatgctaaaaactctcaataaattaggtattggtgggacatatttcaaaataataaga<br>gctatctatgacaaacccacagccaatatcatactgaatgtgcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcac<br>cactcctattcaacatagtgttggaagttctcaccaggacaattaggcaggagaaggaaataaagggtattca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	130675924	130675925	1001699	0	+	1104685189399	CAGACAATGGAAATGAGTCTGC	AAATGCTGTTCCCATGAGTTCT	SINE	Alu	AluY	ctacctgggaggctgaggcaggagaatcacctgaacccaggaggcagaggttgcggtgagccgagatcgtgctattgcactccggcctgggcaacaagag<br>tgaaactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgaggtggtcaccctccacagacaatggaaatgagtctgcaggttccaagaccg<br>ttgtactccacagtcatgctctgactgtaagatcttctactaaaaacaaaattctgtggacctaagcgactagctgtgtacgaggctctgggaacacaca<br>gtgagcagcacaagcagtcctgccttgggaggcctggtctagaggctgcacgtaaagacaaggacaatgtggcttgagaagttcgt<font color="green"><u>AAAAAGAAGCACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGACCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGTGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAACGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGAGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAG<br>AAGCACAG</u></font>aggtcagaactcatgggaacagcatttgatacagacatggggctaatggggctgggggtaggaagaagccatatcagactatttctttcaga<br>aaaagttggacttcattttcgaaatctaacaagttcacttgcatccctgtgacaattgtctcacttctgaatccaaattcttagctgaggcataaatagc<br>cttagcctgggcttgtcaccagatgaagtccaataccttcacctccagtattttctaaggaaaatatgtccttacgtctctgtcggggaatctccttcag<br>gacagatgagttccagaggtgtccctgtgtgtggcacccaggaggttttcacagtgcaagaaatgtgcctttgggagattcaggatgggtgaga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	571	264	NA	intergenic
0	chr12	987961	987962	1001700	0	-	1104685487550	GTGCACATACATGCACAACAGT	AAGGTGCTCTGGTAACTGAACC	SINE	Alu	AluYb8	gttacagtagttactgaaattcaaatgaattccttcccagtggaattaagatttcattcgtattatttctaaaattcttaagtccaacatggctcaataa<br>aaattggtataattcacatatttcactcattctaggatgcaatcatccctctccactacctgatcattttaacatgtgagaaattgggatctactttata<br>actgataatgtggtacataaaatatggtacattttaaagttgatagcatctcagatgtgatgaaatattagggtaacaatacactgtgcacatacatgca<br>caacagtactcaaaaataaagttgaaaaaaggtcattcagaaaagcataccttctacagggtacttctcaagtgattaggaggactacttaa<font color="green"><u>TTTTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br></font><font color="green"><u>TTTTTTTT</u></font>acattccacacagtaaacagtgcagaaatctacatgaaaataaagcatagtttcaaacctagaatatcagacatagctgacacaattctagg<br>gaatgtcataggttcagttaccagagcacctttatttaacctgttatttctaatacctgttacatcaattttggactggtaagactagaagtgaaacttt<br>ggattgtcactgctgtcagtaacgtacccatttacattaaataatgcatatgcaccaatgaggtgatcttcacttcatttctgcaatgagattaacctac<br>ttcaagggttggttacccttagaagaaaaggtagaagtctatccacatgaaaggacaagttacatggaaatcccttttagcaccctttcagaaattaaga<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	547	240	NA	intron:WNK1:NM:018979:10/28
0	chr12	7603981	7603982	1001701	0	-	1104685069300	ATTGGGTTGACAACAGAAGGAG	CTCAAGGTTTGCCTTTGTCTCT	SINE	Alu	AluYa5	taaatgacttgcttaaaagcatgcagctagtaatgacagagctgaaatttgaacccaggtgctctggctcaagcggccacattcctcaccatcatgttat<br>attgcttttcaaaacaaaatacagtttatatggagccaagacatttcaatttccattgtcttatacccacttaagcataaatttgtgaaactgttagtct<br>ttgtaggtaacctgtttactttgaggaaacaagggcaagcctagaataagggccacctccatacagataagaaacaaatctatatgagcaaaattgtcct<br>ctcaaggtttgcctttgtctctgtctagtctcaatttttcttatttttaatgtctatatcacttggtcacttcagtcacctagtt<font color="green"><u>AAAAAAATCACGTTC<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATCACGTTC</u></font>ttggaaaatgatgtact<br>ttagaaataaaaatgtttatctttgccaccttaataattattagattacttttcttaatgactcctttacagaattctctccttctgttgtcaacccaat<br>acaattcattcattattaataatctctctctctctctctattgtacgttgtaatataacagtcctaacatttcttgtttaattggctcctaagtaagttt<br>gtgcatttgttatcattataaatgtatcttttttcttccaattttaaaccggattattactaatgtaatgcagatttctgtttctcttgaaaatcaggag<br>gtctgaaaacattgggccatcatttcaacatgacaacggtgaattggaggtgagtaacctcttcttcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	218	NA	intergenic
0	chr11	117683507	117683508	1001702	0	+	1104685395565	NA	NA	SINE	Alu	AluYb8	aagttagttcaggatctatgccttatcaaccaaattgttttgcctatccaccccatggtgccaaacccatatactctcctatcctcaatacctccctcca<br>caatccattattctgttctggatctcaaacgtgctttctttactattcctttgcacccgtcatcccagcctctcttcgcttcacttggactgaccctgac<br>acccatcaggctcagcaaattacctgggctgtactgccacaaggcttcacagacagcccccattacttcagtcaagcccaaatttcatcctcatctgtta<br>cctatctcggcataattctcgtaaaaacacacgtgctctccctgctgatcgtgtccgattaatctcccaaacctcaatcctttac<font color="green"><u>AGGAGTTGTTGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCTGCAGTCCGGCCTGCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAA</font><font color="green"><u>AGGAGTTGTTGTTTT</u></font>tccttcctaggcatggttagtgcagtcaaaattcttacacaagagccaggaccgcaccctgtagcctttctgtgcaaacaac<br>ttgaccttactgttttagcctagccctcatgtctgcgtgcagcggctgccactgctttaatacttttagaggcctttcctacaaggtctgagaaggccac<br>cacagtcatttcttcccttctgtcagacataattcctcagtttagccttcccacctctatacagtctgataacagaccagcctttattagtcaaatcagc<br>caagcattttttcaggctcttagtattcagtgacagactaatggtctattaaaaacacacctcaccaagctcagccaccaacttaaaaaggactggacaa<br>tac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	30471069	30471070	1001703	0	+	1104685709027	NA	NA	SINE	Alu	AluY	gccacacaatctggaaacctttttttggaggttgggtgggatctagcccgtgtgctcacaggtgcctgttccccctctgctgacagttattccactaagc<br>tgaagttgcctgtagtctcccacattagacactaagctctgggaggcagggcggctgtgtctgcagtcttgttgtatccccagcacccagcacagcacct<br>gacacatggtagatgttcaatacatgttggctgaattaattattgttttaaaatcatttttaatatttgtgcatgtatgttcacaacaggcttatttaca<br>atagctaaaagatggaaacaacccaagagctcactgatggatgaatggataaacatagtgtgctacggatataagtgaaaattatttagcct<font color="green"><u>AAAAAGGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAGGA</u></font>aagaaactctagcacacactgcaacatagaggaaccttgaggatattatgctaagtgaattaagccaggcactaaaggagaaacactgt<br>ataattccttttatatgagcttcctagactcatcaaattcatggagatagagagttaaacaatgtttgccaaaggctaaggggaagagagaatggggagc<br>tcatgtttaataggtagagagtttcagtttgggaaggtgagaatgttctagaggcatatggtggtgaatgccatagatctgtaaacttaaaaatgggtaa<br>gatggtaaattgtatgttatgtgtattttaccacaataaaaatgaccacactgaaaatcttgtttatgatattccaagtgaaaaaaataaaacctctagg<br>tag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	41847723	41847724	1001704	0	+	1104685300470	GTGCCCTTCGATTGATTATTTC	ATTCACCAAAACAATCCCTGAC	SINE	Alu	AluY	tgagtgctaataccaaatcatgtagcaacacagtttcacctactaaatattgccagaccatattgttgaagtctgtgctgccacggtcacctcatcagga<br>tgttttctgtcctgtgactagtggcttcaaatgtactcatccatcttcttgtcccattacatttggtgtgactgatgttctgtacccattaaaattgatg<br>ggagagaacaaagagaagaaaaatgtgcccttcgattgattatttctctgaaagcgtaaatgaaaattctccagtaccaacaagagatttagagtggggg<br>gtttcccccatttattaagtgctttaattagcaggtttacgaaacagagtttcctgtttataagggtgcgtttttcagctcactt<font color="green"><u>AAAATTTAATCTCCT<br></u></font><font color="red">TGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAG<br>CTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATTGCGCCACTGCACTCCCGCCTGGGCCGCAGAGC<br>AAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTAATCTCCT</u></font>tctgaaatgtttgatctttataagatgaatttaatagctgtaacattgtttatagtca<br>gggattgttttggtgaattctcagtaccagaaccaattaaatcagatgccttcgtgtcaggtttttttcttctgatgagctatcataatggctcatttta<br>tgctctgtgatagccaataattaaattgaccattgttgtaagctgaagccaaaaccaaagtgattttggaaggctcaatcttcctaggtttttcttggat<br>ctattgaatgttatctttgtgttcaacaaattgcagaacagcaagatatctctgcaatactcacaacacatttgtttaattacattattgaatgtgttag<br>gggaaaaataaagcctgcccactggct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	494	253	NA	intron:PDZRN4:NM:013377:1/8
0	chr12	39378253	39378254	1001705	0	+	1104685491959	CTGCAGGGATTCATTTGTTCTT	ACTGGACTTGCTTATTTCATGC	SINE	Alu	AluYa5	tacactctactataaagaaacctcactgcagggattcatttgttcttaataatttatttatttattttagaattgggatctcactctggactccagtcca<br>ggccagagtttggtggcatgataatagctcactagcagcctcaaacacccaagcctcctgagtagctaggactaaaggtgcatgccaccatgcctgtcta<br>atgtttgggtttttgtgttgttcagtttggtttggtttggttttttaaattttctagactcagtatctcactatgttgcttaggctggtcatgaactcct<br>ggcatcaagcaatcctcctcccttgacctcagagtcattgggattacaggtatgagccactgtgcctggccccatttgctcttaagaatttaaat<font color="green"><u>NNNNN<br></u></font><font color="red">CCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC<br>TACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCA<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAATTTAAATG<br>TTTGC</font><font color="green"><u>NNNNN</u></font>ataagcaagtccagtctgcttctaaaaaaaaaattaccgcatcttttatcttaaatatttgctgatctacatatggccaattccactatt<br>ttgagaagagtaagcaattctaaacataaggcttcacaaagagccaagtcatcagaattacacagcccaaggctctagaggtcatataaaaacaataaaa<br>aatctccaatttaatgaatttatttttttctataaaatatctataaagcatatactgagtcaaaccaagttgcttcaggaaaatacacatacacagatct<br>ttcccctttggaaaaaaggaaatatttgacttttaaaattattctgttgaattaaaatattccagttaaaatgaattaggctgtacacatatttaatctt<br>atatt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	700	398	NA	intergenic
0	chr12	43717941	43717942	1001706	0	-	1104685301028	AATGTACCACCCACCAAGACTC	CACTGGGTGGGGTATTAGGATA	SINE	Alu	AluYb8	gatgtccttaacacaaaagaaatggaaacttgcaaataagtgccttgagaaattcagtgttgtttaagactgaaaataagacacataaaaaatttaatta<br>aataaagattctttttagtcattaagttttagaatggagaaaattctgtgtgacatttccctgctgtttcattagcactaatgtctcactgggtggggta<br>ttaggataaaatcctaagcaaatattttcagtattgcaagaagaatgctaagtctgctgttagaagaaaatgaagaaagtcaaagaaggaaagacactga<br>agcttttgtgacctgtctctgccatgaatctgcagggatttgagaatgaaagagggattcaagaatggctcaattaaaaagttacatt<font color="green"><u>AAGAATATTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATTTGG</u></font>aaactagagtcttggtgggtggtacattaaaagggaaaaaatcatgggaaatgaagataagtgcca<br>gagaaaaaaacagaattgggaaggagaggtaaacatttagaaaataaatatttaattagtaagttggtaaatccactaaatttaaaaaaagagattaata<br>tcagtttcaagaggacagtttgaagagcaggctgtatcagcagtcacacctaaaacagggaccgaagtcaaaaaaggcatgggaaaacaaatcctgtgga<br>acttcccaaatctcatttcagtcgaaactgtccagtttctcttttacttttttttttaaatcttttgaaaacaatgaccaggggtttatcactttcagct<br>ttaccattttacgttacaggct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	576	243	NA	intergenic
0	chr12	18751634	18751635	1001707	0	+	1104685705423	NA	NA	SINE	Alu	AluY	gatatagatcaatggaacagaacagagccctcagaaaaaacgccgcatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaa<br>aggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggaacccttccttacaccttatacaaaaatcaattc<br>aagatggattaaagacttaaacgttagacctaaaaccataaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttca<br>tgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagaacttctgcacag<font color="green"><u>AAAAGAAACTACCATCAGA<br></u></font><font color="red">ACACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGAGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCAGAG<br>ATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAACTACCATCAGA</u></font>gtgaacag<br>gcaacctacaaaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaa<br>caaacaaccccatcaaaaagtgggcgaaggacatgaacagacgcttctcaaaagaagacatttatgcagccaaaaaacacatgagaaaatgctcaccatc<br>actggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctgg<br>agaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccactgtggaagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PIK3C2G:NM:004570:29/32	
0	chr12	9369239	9369240	1001708	0	+	1104685070068	NA	NA	SINE	Alu	AluY	tgccctgaatggcttttgggtaaacaatgaaattaaagcagaaatcaagaaattctttgaaacgaatgagaacaaagatagaaaataccagaatatcgga<br>gacacgtctaaagcagtgttaagagggaagtttataaggctaaacattcacatcaaaaagttacaagatctcaaagtaacaacctagcatcatatctaga<br>ggaactagagatataagagtaaaccaaccccaaagctagcaggagaaatgaaataaccaaaatcagaatttaaatggaggaagttaagatgcaaaataaa<br>taaataaataaatacaaaagatcaatgaattgaggagtggatttttgaaaggatagataaggttgatagaacactagatagactaa<font color="green"><u>AAAGAAAAAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTCTACTAAAAAAACACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGTCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAGAAAAAAAGAG</u></font>agaagatccaaataagtacaatcagaaatgaaaatgagaatttaccaccaactccacagaaatgcaaaagaacctcagatactact<br>aaggacacctctgtgcaaacaaactagaaaacctataagaaatggataaattcctgaaaacattcaacctcccaagactgaaccaagaagagactgaatc<br>cctgaacagagctataataatttctgatattgaatcagtaataaaatgcctaccaaccagaaaaagcccaagaccagattcacagccaaattctaccaga<br>tacataaagaagagatggtaccattcctattgaaattacttccaaaagttgaggaggaaggactcctccctaaatcattctatgaggctagcattatctt<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	14173879	14173880	1001709	0	-	1104685704216	NA	NA	SINE	Alu	AluYa5	gttggaaatttcaacatccttcttttagtaattgacagaactagacagaatatcagtaaggatattcacgacttgaacaacaccattaaccaacttgatg<br>taaataatatatagagcactctatccaacaacagcagggtacacatttttttcaagtgtacatggaacattttccatgataaataataatactatagact<br>gtcaaacacatctcagaatatgatttttgactaaaaaaattcaggaaaccaacaacggaaaagtatttaggacttcacaaatatttggaatttcaacaaa<br>tagttttagaaaaacagtgagtcaaagatgaaatcaccaggtaagttagaaaatatgcttaactgaataatgattaaaacctaatctatc<font color="green"><u>AAAATTTATG<br></u></font><font color="red">GGCCGGGCGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATTTATG</u></font>gaggtagctaaagtagtgcttacagacaaacttaatgttaagtgcttatattagaaagaaaatagatctaaaatcaatttcctaag<br>cttccacctcaagaagctagacaaagaatggtaagttaaatctcaagtaagcatagggaagaatataataaagaccaaaaaagaaataaatgaaatacaa<br>attggaaaaacagagtaaatccacaaaatcaaaagtttgtttatttaagatcagtaaaactgataaacatttagctacactaacaaaaaaagagatagaa<br>gacaaattaacaaaatcaagaatgaaagaacatcaccacagatcctgcagaaattaaaagaattagaagggaatattatgccaatgaattagacaatgta<br>gatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	14386207	14386208	1001710	0	-	1104685704314	NA	NA	SINE	Alu	AluYa5	ctggatgggtaggataggggagttgtaaggagaatctgtaggctttaagaggccatgtggtaacaggcgggtgataacaggctttaacccttttaaagcc<br>tgctgtgggatgggatattggcattgagtggggtaagggtgattacgttttaatgggatggtaaagggtgcctgatcggtcaccaaggagggagtagagg<br>tatcccatatttgtggattaaggtacggagacatgagaggaggatgtgaagggagctttgaactggggaaaagggtggcaataacgtgtggctatagccc<br>aggaatagtcatggaagcagataatttagttaaaatgtctcgacctaataagggagctgggcaggtggggataactaaaaaggagtgcataaaataa<font color="green"><u>TGT<br></u></font><font color="red">TGTCCAGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGCGGATCACGAGGTTGGAGATTGAGACCACAGTTAAACCC<br>TGTCGCTACTAAAAATACAAAAAATTAGCCAGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGGAGGCGGAGCTTG<br>CATTGACCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGCATGTT</font><font color="green"><u>TGT</u></font>caagttg<br>gcaccagaattggggagttttaagaggtttagaagcctggtcgtgaatacccacaacagttacggaaacagtcccttgaaaagaaggtaatgtggagtgg<br>gtagcctccatattgattaagaaggggacggagttaccctccactgtaagagttacccaaagcgtctgtgatggtccaggaggcttccgaggcaatcagg<br>cagcatcagtcttcagccactaagccgggaagatctgggaaggagtcagtcagagagccttgggccagagttgcaggggctctgggagtggctgccaggc<br>gagttggacagtctcatttccagtggggtcccgcacagatgggacacggcttaggaggaatcctgggctgcgggcattccttggcccagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	71525480	71525481	1001711	0	+	1104685238805	NA	NA	SINE	Alu	AluYb9	atataacctgtagtctggtagattatttattgagttactttaaatcttagcgacatactttaagtattaatgacagcaattccccttcagggcagagcct<br>ctttaattttgataagatcagtgaaaaagatcagtagtcaaggaaagggtagtttcccctgagatactttctatttccttttataaattattttcagtag<br>cagttactaaaccaaaacatttctagattgaaaagaatcttcgggtattatagatattaatattaattcattgtgatttatagtggtttttaatgtatct<br>gcctctcaactagattgtaatctcctagaggatccagaagcatgtctgatcctagcaagggtctgtctgacatgtagtaggcactg<font color="green"><u>TTACTGTTATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TTACTGTTATTCTT</u></font>taaatgaaatactaatatcaattgtaatttttgtacacatttcttctaagcagaacgaacaacttatgaagggacaga<br>tgtcatgttcttcatgaagccatatcctgaaccccacagactaagtgagatggggtcccataacaccttgcacccatctctatccaagagatactagtag<br>accattggattgaagttgcctaactatctttctctcttccttacttgagcatcagctccatgagtgcagacattgtgctctgttcaggaatgaattcccg<br>gtgactggtagaaagcttggcgcataggaggtggtcagtaagtatttgatgaactgatcaataagaagaactaggacatccatgtattgacattcacaag<br>tcacataa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TSPAN8:NM:004616:7/9	
0	chr12	75931102	75931103	1001712	0	-	1104685237810	AATGCATGAGTTGGAGAAAACA	TCCTGAAGACACTGAACTGCAA	SINE	Alu	AluYg6	acagaattagccaggcatggtggcacatgcctgtaatcccagctactcaggatgctgagacaggagaatcacttgaacctgggaagcggaggttgtggtg<br>agctgagattgtgccattgcactctagcctggggaacaagagcaaaactccatctcaaaaaaaaaaaaataataaattgtgacaatgctttgttatttaa<br>ggggaaatatacattttggaattaggtaagagttcattttaatcaaaacatagcaacaccatcacatggaatcgctcaagtctgccaaatttctagttaa<br>aatgcatgagttggagaaaacatttaagaatatttgatatgtttataccaatctaggactgtttatctctggactactttacat<font color="green"><u>GAAGATTATTTTCTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GAAGATTATTTTCTTT</u></font>taggtattttaagctgcagcttttttagcttgttttgttatttgtaaccaaacaaaactaatggaattcataacagatata<br>gtacccaagaatgtgtcaaatatcaacaaggtagcagacatcaacttttcatctaacctgaagtttagaaaattgcagttcagtgtcttcaggaatttct<br>tgattctacctgttctgtagtgacagcacctgaaatcattgttttattgtctctctttgcaagagtgtgggtatccccaagcatgcctaagggaaatcag<br>gggcatatgttgagttcccttctctgatcagtttacatttttatttatagttatatttttgtgtttaaggacaatacatgccagtcaactacagcataaa<br>act	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	594	276	NA	intergenic
0	chr12	84165497	84165498	1001713	0	+	1104685534804	CTGCCAATTATTCTGCTTGCTT	TGGTTTCTAGGTTTGACACAAATG	SINE	Alu	AluYb8	aactccccaaagtgacatgaattcacatacaatgggcacaagggtttcagttttacttattacaagcacatcatagaaggaaattgttgtatttatgtgt<br>tatcaggctagtttcagatatcctacatgccactcctggtgtggcattaaacaagtgacctaacctctccctctgcctcagttgaatttgcattacagtg<br>aggcataattggttaccccatggagatgtcagggttaaatgatataacccatatggcacatactaaacttaatatctggcacgtattaagcaatcaataa<br>ataactctaagttgttacaccataataagatgaattcctaatttggtttctaggtttgacacaaatgtaactctaaatggagtat<font color="green"><u>ATGTGACCTTTTTCT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATGTGACCTTTTTCT</u></font>ttgttgacttcaaaatgtctctacccacttttttgctatgaagcaagcagaataattggcagcaat<br>actagccttcttgttccccttgtccctgaatactctttgctacactctgaccctaaagacagggtgatacttttcaaaattctattcatgtctacctcat<br>ttcattcagaatttacaatataaccatggatgccactatgctattttggggccataatagaaactggactttgcgttattggttctatactcaaaatgtg<br>gtccattgacatgcagcattaacatcactctggagatcagagatacatagctctaacactcactgaatcagaatagcagatctcactgaatcagatgcag<br>atccccgcatctctacccc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	453	120	NA	intergenic
0	chr12	45064377	45064378	1001714	0	+	1104685301299	NA	NA	SINE	Alu	AluY	aatgaaataattgatcatcgttataccagccctacaaaaaatgtttaaggtaatcctatatctgaaagtgaaagaaagatatctaccatcatgaaaacac<br>aagaaagtataaaactcactggtagagcagatatacaaataagaaagagaaaggagtcaaatattatcactataaaaaaaccccatcaaattgtaaagta<br>aacaacagaagaggaagaaagaatatgtaaaacaatcagaaaataattaacaatatgacagaaatccccacctattaataaaaaccttgaaagtaaatgg<br>cttaaattcatcaattaaaagatataaaacagctgaatgtattaaaaaacaagatgcaagtacaagaaacctatttcatcta<font color="green"><u>AAAGATACACATAGACTA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGATACACATAGACTA</u></font>aaagagaagggacgaaaaaaaatccatgcaaatgaaaaccaaaagtgtgaaggagtagctatgtttatatcagaaat<br>tgacttcaagttaaaaaacataaaaagggccaaagtaggtcaatatagatgacaaaggaatcaattcagtaggaagatacaacaattgtaattgtatacg<br>cacctaacacaagagcacccagttatataaagaaaatactattatagctaaagagagagaccccaatataacaatagctgtgaacttcaacaccctcgtt<br>ttagcactgggcagatcatatagacagaaaatcaacaaagaaagatcagacttaatctgcactacatactacatggagttaacatttacagaaaatttta<br>cccaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NELL2:NM:001145108:12/20	
0	chr12	45131147	45131148	1001715	0	-	1104685301307	CCATTGTATTCATTGGGACAAA	AGCAGGCAAACAAATGAGAAAT	SINE	Alu	AluYa5	ttaaatgacaatatggaattaatgaagagcaaaacccacgtataatgaccaatagaaagtggaagaatgattctctgtgggccaatactcatttaatgat<br>gcaggttgatcacaattgttgtgtggccatgtaacaatactctgagagctggacttatgtatttaccatggggggattattacagagcaataagaagtat<br>gtggcaaaaaccaattacagaaaaagaaatgatttcgaattaaaataacactaataatattcttagagatttgttgcatgaaaaatgagaaaggaatttg<br>ggaggagcaggcaaacaaatgagaaatctgcctattaaagaggcataattttatcaactaagaacaaacaagttttttgtttattat<font color="green"><u>AAAAAAGTTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAAGTTATTG</u></font>ttgtgaactaaatgtgtgcatgttgagactgtttgtcccaatgaatacaatggcaatactgctttattctgatcaattatgca<br>tgaccaagaaaatggttatttagcagctagacatgagggacttatagcaaaataaaatactcaaaaattaaacatactttatcttaatctgagcaacttc<br>actctgaatattagaaaagtaccaattttaatatagtatgtggtatttattttgaatttttacataatttttacaaaatagaaaaatattacctatcaat<br>attttgataaaatttcaatatctaaaaataatatttttatgtaactacagcactgaaaataaatcaggacagtaaatcagatcaatgagtaaacaaatac<br>gaga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	465	149	NA	intron:NELL2:NM:001145108:9/20
0	chr12	45419555	45419556	1001716	0	+	1104685301380	NA	NA	SINE	Alu	AluYa5	cctacacaaagaacacacccctgcttgattttagccctatgagacccatttcagggtctgacctctataactataaaataataagtacctgttgctttaa<br>gacactcagttcatggtaatttgttacagcaacaatagaaaactaatacactgggtatcaggctcactgagccaattgctgaagaaaccagacaaagagc<br>acatagttcccaccctaaaggagctcaccttcttatgggaggggtgacccatgaacattcactctgtaacatagcaccaggaaggcagctactatgtaac<br>atagcaccagaaaggcagctactatgcattctggtgcttaataattatttactgaataaacaagtaaatgaatgtcataagtactagaa<font color="green"><u>AGAAAGATCTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAAGATCTG</u></font>caaagtgcactggcatcacaaaggaggaaatgatgagttcggagaaaacagtcaggttgagtcaagtataaaagaacaataccgtttaa<br>gagagaaagaaccaaagccaattcaaacagttactagtatgtctgaaagcccaaggaataaagtctatccaaggaaaagtaagcagtcatcaaggctggg<br>gaaaggcataaagcagaggctgcatgagggcaaccatatccagcctgcaaatgggctttttttggtcttagcatgttggttaagaattctgatttagttg<br>tccacatttaaaaagcgggaagtttcacataaagtccagatttctgacacctcttcaaaggtaaccacactgggctcagagtgagtagcaggtgcctctt<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DBX2:NM:001004329:2/4	
0	chr12	55155737	55155738	1001717	0	+	1104685052707	NA	NA	SINE	Alu	AluYa5	gtgagccgagttcatgacattacactccagcctgggcaacaaaagcaaaacaccgtttcaaaaaaaaaaaaaattcacaatagcaaagacttggaactaa<br>cccaaatgtccatcaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatctcctttg<br>tagggacatggatgaagctggaaaccatcattctgagcaaactattgcaaggacagaaaaacaaacaccgcatgttctcactcataggtgggaattgaac<br>aatgagaacatttggacacaggatggggaacatcacacaccagggcctgtcatggggttgggggagaggggaggggtagcatta<font color="green"><u>AAGATATACCTAATGT<br></u></font><font color="red">TGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGG<br>GCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCA<br>GCCTGGGCGACAGAGCGAGACTCCGTCTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATACCTAATGT</u></font>aaatgacg<br>agttaacgggtgcagcacatcaacatggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataataagaata<br>gtaaaaaagaaagctttggaacatgaaaaaaaatcagaaataattcagagagtgctgctattactacatttattctcattatactagagtttctagcctg<br>attattaaaatcagaaaaggaaataaagggtcaaatagttggaaaggaagaaagaaaaaaatgtcgttatttgtggatggcctgattatctatataaaat<br>caaaaatcaaaataacctataatttatcaaaattaatatacttcaatatcttcatttataaaatatagataataat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	61537954	61537955	1001718	0	-	1104685241322	NA	NA	SINE	Alu	AluY	acaacctacagaatgatgagccaaaaaaacctcttctctttataagctatgcagcctcaggtatctctttatagcaacacaaaaagggactcacaaaaat<br>aattcttataaaaattatgtgattatttatttaatgctgtattctatactactatatcataacttagtaaagaacaagatcacacttgtgtagttcactc<br>ctgtgtacccagtgcctaactagtacttagcatttgttcctcattcaccatatatttatttatagtccctctttcaaaatcatcaggtacaaataatatt<br>ttctcaacaaatgttgataaaattatgtttatctaaataaatacataaattcaaataatattataccaagaataattgaaacccc<font color="green"><u>TGTCTCAGATTTCTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGTCTCAGATTTCTT</u></font>ta<br>gtttgtgtcattctagagtttatactttaaatgaaatgtaaatatgcacagaatatgtttgggaatcaattacaccacaataaaccaacgagaaaaatat<br>acaatgcaaactatattcctttattagttagggtttttcagaaaaacaaaccattaggaaatgtataataatatttactctaaggaaggggctcacatga<br>tgatgaaggaggctgggaagtcctacgatctgccatctgcaagctgaaggaacaggaagttctgtggtataattcaaaaacttgagagctagaaagtcaa<br>tggtagatttcatccagtttgagcctgatgtcctgagaaccagggttgctttgtcagaagaaagttaatgtcccagctcaagc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	47730692	47730693	1001719	0	-	1104685301895	NA	NA	SINE	Alu	AluY	aaaaacacaaaaattagccaggcatgctggtgcatgcctgtaatccctgctactcgtgaggctgaggttggagaatcacttaaaccctggaggcagaggt<br>tgcagtgagctgagattgcaccactgcactccagcctgggcaacagaatgagattctgtctcaaaaaaaaaattatatattgtctaagtactataacatt<br>accctaattgtgtatagaaaaattactaagactattacaagcaggggagggtaaagggaggcataatttttatacttcactcaaactggtaaaatgaaaa<br>cttcaatagactgtgattagttgtgcatatattatgtcacacctaaaacaccaaaaaataaaaaagttatacaaatacatacactaaaaaa<font color="green"><u>TGCTATAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAGGAAACG<br>ACACTGGAATACTCACCGGCTAGTGCTACGT</font><font color="green"><u>TGCTATAGG</u></font>aaatataaattgaattctaaaagagtaactctcagaaagacaggaaagacaaatgaaaac<br>aaagatcaaacaaaaaacaaaaccaaaaaaattacagtaaatggaaatggtctaaatatatcaattaaaagatattgttacagtggattataaaacatga<br>cccaactatatgctgtctacaagaaactcacttcaaatacaatgatataggcaagatgaaagcaaaaggatagaaaaatatattgtgtaaatattaattt<br>taaaaagcaagagtagacatattattaggtacactaggctttagaaaaaagaaaattaccagagacagagagggatattatataatgataaaagggtcag<br>tccaccaaaagacatagtaatcctaaatgtg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	115731093	115731094	1001720	0	-	1104685141787	NA	NA	SINE	Alu	AluY 	ctatgagtttgactctttttcagttttcatataaaagtgagatcatgcagaatttgtctttctgtgtctggcttatttcacttagcaaaatgtcttcgag<br>gttcatccatgttgtcacaaatgacaggattgcctctttttaaatgtttaatagtattttattgtgtttatatgatccccaaagcacaggcaacagaagc<br>aaaaattgacaaataggattacatcaaactaaaaggcttatgtacagcaaagggaacaatgaacagagtggaaagatgacctacagaataggagaaaata<br>ttttcaaattgtacttctgataaaggattaatacccaaaatatataagaaactcctagaactcaagaaaatgagtaacctgatt<font color="green"><u>AAGAAACAGGCAAAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAACAGGCAAAGG</u></font>catgaaaagacatttctcaaaagaagacctacaaatggccaacaggtttatgtaaacatgctcaatatcactgatcatcagggaa<br>atgcaaatgaaaaccacagtgatttatcacctcacacctgttagaaaggctattatcaaaaaaagatcatgaatgttggccagggtgtggagaaaaggga<br>actcttttacactgttggtgggaatgtaaattggtgcagccactatggaaaacagtgtggaggttcctcaaaaaactaaaaatagaaccatttgatccag<br>caaccccgcttctgaattatatacccaaaggaaataaaatcagtaagtcaaagagatatttgtactcctatgttcattgtattattcatatcagccaag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	97495360	97495361	1001721	0	+	1104685531254	NA	NA	SINE	Alu	AluYb8	aaataccatagactgagtgggttatagacaacaaaaacttatttctcacagttttggaggctgggtagtccaagatcagtagatgattttggtgccagta<br>gattcagggtctggtgccagtagattcaatgtctggtgagaactcccattctggaagaagggttgaaggagctctccagggcctctttcataagggcact<br>aatcccatttatgaggacaatgccctcatgacccagtcatttaccaaaggccccaccttctactaacatcatattaggggatagaatttcaacatatgaa<br>ttttggggagacacaagccttcagtctataccacctactgtatctgaaggtaggtgaatctaaattgataaaaattctaacttttt<font color="green"><u>CTACATTTGTTTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CTACATTTGTTTTT</u></font>ggcaatacaatggataaaagatagttttttcaagaatggtgctggaaaaactgaacatcca<br>caagcaaaaagaaaataaaaggaatctagacacagaccaccttattcttttcagaaaaattaactcacagtggatcacagacctaaatgtaaaatgcaaa<br>actatgaaactcctagaagataacataggagaaaatctagataactttgagttcgataatgactttttaggtataacttaaaggcacaatccatgaaaga<br>aatagttgataagctggacatcattgaaattaaaagtttctcctttgtgaaagactttgtcaagagaaaaaaagataagccatagactgggagaaaatat<br>ttgcaaaaggcatacctgataaagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	105317164	105317165	1001722	0	-	1104685529423	NA	NA	SINE	Alu	AluYb9 	tttgggacttctctctttttttcatagtctagctaaaagtttgttgattttatcttttcaaaaaataactttttgtttcattgatctgtatttttttagt<br>ctgaatttcattatttctgctgtgatctttatttaatttcttttcttctactaatttggggtttgaattgttcttgcttttctagttccttggggtgcat<br>agttaagttgtttatttgaagtctttct<font color="green"><u>AAAAAATTAGCCAGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGT<br>GTGAATCCAGGAGGCGGAGCTTGAAGTGAGCCGTGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAA<br></u></font><font color="red">TTTTTTTTTT</font><font color="green"><u>AAAAAATTAGCCAGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGTGTGAATCCAGGAGGCGGA<br>GCTTGAAGTGAGCCGTGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAA</u></font>attttttgtatttttagt<br>agagacggggtttcaccttgttagccaggatggtctcgacctcctgacctcgtgacccgcacgcctcggcctcccaaagtgctgggattacaggcatgag<br>ccaccgcgcccggcctctattttttgacatagtatttattgttataaactttcctcttaatactgctattgctgtattccatagattttgacatgttgta<br>ttttcatttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC41A2:NM:032148:1/10	
0	chr13	29538891	29538892	1001723	0	-	1104685354522	GCAGAGATGCTGTTCAGAAATG	TTGTTTCAATGAACTGGGTCAG	SINE	Alu	AluYa5	gagagatcataaatcacaaccatccgtgtgaacttcattatgacaacacgggttaaaacaagagactctctccactatgttaccaaaatggaaagtgaca<br>cacatatgccatggggtgattgcaattactgcgctgctcatcagctaaagggagcaatcgcacacaaaccgcatgtttctaaaatgggagccccatcaaa<br>acagggagcatatgggactatcagatatacatgcacagcaggagaccctgccaagatgagcagagttgagctcgggaacgcagagatgctgttcagaaat<br>gtgcaatcgagaaaggccagccatcaccacaaggtatggatgggactttgggcattagggttcttctaacccaagacccaggcat<font color="green"><u>CTTTTTTGTGTTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCAACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>CTTTTTTGTGTTTTT</u></font>cttcttgtacatgactaaagctcagacagactgaaacactgacccagttcattgaaacaatgacccagttcacttg<br>aggtccccaaagcaatgcccaaaaagcagcaacagatctgtttatccccaatgtcacttgcaactctgcagacacacctgcaatcaccatccttcataat<br>tcagcgtacctctcaagtgccaggcagtgtttaggtgcagtggctgtgccagtgaacaagacaagactggccggtttgacaaatagagatgcgttgctgc<br>tggtggtgttaatgggtcggaattttattctaagctgtgcaaggaatgacacaatccaatttacattttcaaatttctcttaatcacagaataaagacca<br>gatgagagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	505	182	NA	intergenic
0	chr13	36716817	36716818	1001724	0	-	1104685160224	NA	NA	SINE	Alu	AluYa5	tcaaggatgcagaaatcttgagagctatcatagcatgttttctgccagtagtcccttatatttgtctttttataaatcttattatggctttattctggtt<br>t<font color="green"><u>AGGCTGGGCACGGTAGCTCACATCTGTAATCCCAGCACTTTGGGAGGCTGAAGCAGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAC<br>GGTGGAACATCATCTCTGCTAAAAAATACAAAAAAATTAGCCGGACGTGGTGGTGGACGCCTGTAGTCCCAGCTACTCGGCAGGCTGAGGCAGGATAATG<br>GAGTGAACCGGGAGGTGGAGCTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAA<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>AGGCTGGGCACGGTAGCTCACATCTGTAATCCCAGCACTTTGGGAGGCTGAAGCAGGCGGATCATGAGGTCAGGAGATCG<br>AGACCATCCTGGTTAACACGGTGGAACATCATCTCTGCTAAAAAATACAAAAAAATTAGCCGGACGTGGTGGTGGACGCCTGTAGTCCCAGCTACTCGGC<br>AGGCTGAGGCAGGATAATGGAGTGAACCGGGAGGTGGAGCTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACCCTGT<br>CTCAAAAAAAAAAAAAAAA</u></font>gttgttttctttctaacttctgaagttagatgcttagttcattggttttctaaagtattttctaaaggccattatgatttc<br>tcctttgaacaatgtacaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intergenic	
0	chr13	37949995	37949996	1001725	0	-	1104685159858	ATTGAAAGGAAGCAGCAAAGAC	ATGACTTGACAGCTCAATTTGG	SINE	Alu	AluY	ggagacagtcgcaggcagagaagaaggcaccagggatgggatgctgccagtggtcagaaattgttccaagggcagggcaccactgtacctggtagccacg<br>atgcaaacagaggttaaatagggagtatgtgtggggaaaccataggaatagtatcgaacagataagactggcacagatgatgcagtgccccaaaagccaa<br>ataattgatgctagggaaacgtgagtttttaagagaggtgatgaaagcagtattttagggagatttatctcacaggagaatactgagagcccaatacaaa<br>taatgctctgataatccagaggtaagatgatgaaatgctatgactcaaagtatacacccaagaattgaaaggaagcagcaaagacaa<font color="green"><u>CCTTTATTTATTT<br></u></font><font color="red">GCGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>ATAAAATAAATAAATAAATAAAT</font><font color="green"><u>CCTTTATTTATTT</u></font>tcttggtactaaaaataggattcaaggagaaagaaaaatcaatcataagttttctaacttaaaa<br>cgctgaaataatagtatctatagggagttgagaatgaaaattattttggaaggatagattggttcaatttcaggttcattaaatttgagataaagtgatg<br>atagtgtatacccaaattgagctgtcaagtcataaaatttttctaaatatccctcatctacacatttctaattaaattagaaatcttattcaaaacaacc<br>aagatcactaccattttatttcatggataaatgggaaaatattgtaagaattctcattattccatttccattaatatatttccaagcagctctccaaatt<br>catctatatcccttttattacac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	470	236	NA	intergenic
0	chr13	34738966	34738967	1001726	0	+	1104685061014	GCCCCTTAATCACTGTTACTGC	GAAGTGGGCATAAGCAAAACTC	SINE	Alu	AluYb8	aaatcactaagacctgtgtgtagtgagtcttccaactgacatatctttcaaccagagaagccctcctttatccatgaataagcatcagttgctattctct<br>acatcatggattcctctccattaccaccttagccctgaaaacacttctatctactcctaatataagccacgtgaaaagctaagatttgttgctatttttc<br>attatgctgagactgatcacagaggcatactatggcaatcacagacactaacctggcggtaagtcagggcaatttcattacaagtgcacgcttgcatttt<br>atgccccttaatcactgttactgctctcccaagcagcacattctttcagcttggattttgacaatacgttctttgtcagaggaatgctg<font color="green"><u>AAAGAGGGTGA<br></u></font><font color="red">ACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA<br>GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT<br>TGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGGGTGA</u></font>aaggggctg<br>ctattgccagaacagttccctggcacctgaggcggaggtacttaaaaagccactgtgtgcatttacacttgctccattggtgcacacagccttactcaaa<br>agaataatgataatgcaggtaacagtcttatctggctcagcggttttaccttttcgtagcctccagatgtttagtggagttttgcttatgcccacttctt<br>cagaaaacttacctagttgtgttaaggtcaaaggtacaatgcaaaattccctgagacctgaagagcagctctatctgagatgactgagtagccaacttgc<br>tacgctgtgcctcttcttaaagcgtctgtgagccgggaatcacaattattgagaaaggatcataaattaaattaaatgac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	596	307	NA	intergenic
0	chr13	39452726	39452727	1001727	0	+	1104685159415	NA	NA	SINE	Alu	AluY	cttttactgcagcattgagaaggtgtttctatgcactggagctgatggctatgttcccaagtatagtccaatgaatgcagaatatggctgcttagccgac<br>tctccttcactcttatatagatttaaaattgtggtaagtgctttgacccaaaaaatgagctagatagatttttcaaagttcagcctccttgtcttatatt<br>taaaa<font color="green"><u>CCTCAGCCTCCCAAGTAGCTGGGACTCCAGGCATGTGCCACGATGCTCGGCTAATTTTTTAAAATTTTTTGTAGAGATGGGGTCTCACTATGTTG<br>CCCAGGCTGGTCTTGAAATCCTGGCTTCAAGTGATCCTTCTACCTTGGCCTCCCAAAGTGCTGGGACTATAGTGTGGCCACTGTGCCCAGCCTTGTTTTT<br></u></font><font color="red">CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCCCCGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CCTCAGCCTCCCAAGTAGCTGGGACTCCAGGCATGTGCCACGATGCTCGGCTAATTTTTTAAAATTTTTTGTAGAGATGGG<br>GTCTCACTATGTTGCCCAGGCTGGTCTTGAAATCCTGGCTTCAAGTGATCCTTCTACCTTGGCCTCCCAAAGTGCTGGGACTATAGTGTGGCCACTGTGC<br>CCAGCCTTGTTTTT</u></font>gggaagattgcttaagtcaggaagttcaatctatgatcatgctactgcactctagcctgggtgacagagaaggtccccgtctctta<br>aaaaaaatagaaaaaccaacaaaatgatcatttttagtaaaccaaatggtgacattttatagtaatttgtacttgcacaaaacaaatagagaaacatgct<br>gtcctggcaaaagccgtgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FREM2:NM:207361:22/24	
0	chr13	21894780	21894781	1001728	0	-	1104685715456	NA	NA	SINE	Alu	AluYb8	aggggctgagggggcagaggacactggggacagttccgtctgtgttccccaggccacaacttgagtggacaatggggaagtccactgtgcaaaactgtaa<br>aaggcactcggagtagctactaccgcccactgcccgtgggggcctctggctgggggctagaggcgggtagggagctcttcctcgctgtccccgcagtttc<br>cacagcaatcctttggcgactgaagagtctctgcagcagtcccttgcaggtggctggcccttccagtccaggtctgggggaactgagccatccagcccaa<br>agacattcagctcctggaagcactcagtctccaccatcccgttctgccaggggatgggcacgctgcctgtggcaaacttctggt<font color="green"><u>AGAAGTCTTGGTCGGT<br></u></font><font color="red">TGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCG<br>GGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCG<br>CCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTCTTGGTCGGT</u></font>gcctccagct<br>ccacacccttgaccctagagaactgtttaatgtccagaatatccttgcagtaaatggcccgagggtcaggcttgaagggcggctccagcatgccggctcc<br>cacccgcttgaagttcagcttcttcaagagggggtgctccttcacttcgcgggcactgcccccacgacaccccaggcgttcagcggggtccttgcagagg<br>agctgtgagcaggcctgcggggaaaagcgctcggaatactcctcggggtcctccttcaccagccgctccacctcctcccgcttgatcttcttcttcctct<br>gctggaagggcgactggcctgcaatcatctcctacgggaggcagcctagcgcccaacagtcagagctgaaagtg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	22530362	22530363	1001729	0	+	1104685715659	NA	NA	SINE	Alu	AluYa5	tatcattatcagcattttgtcaaagccattcaataagtatctaggactttcctaacttttccacattttcctgtcttcttctgagccctccaaactgttc<br>caacctctgcctgctacccaattccaaagtcacttccacattttcgggtatcttttcaacagtgccccattctactggtaccaatttactgtattcgtct<br>gttttcatgctgctaataaagacatgcccaagactgggacatttacaaaagaaagaagtttaactggactcacagttttacatggctggggaggcctcac<br>aattacggtgacttgcaagaaggagcaagtcacatcttacgtggatggcagcaggcaaagagagcttgtgcatggaaatttccattt<font color="green"><u>AAAAAACCATCAG<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAACCATCAG</u></font>atcttgtgagacccattcactatcaccagaacagcatgagaaagacccacccatgattcaatcatctgccaccgggtccctctcac<br>aacacgtgaaaattatgggagctacaagataagatttggtggggacacagagccaaaccatatcacctatatatattcctcataacattcaccttatgag<br>tgtccatttttgtccattgatagcatcttttagcgttggggcacacttcacccttcagagacagtttggcttttttttttttttttttttttttttttta<br>agacaaggtcttgctctgttgcccaggctggagtgcagtggtgtgctcctggctcattgcagccttgacctctccaggttcaggtgatcctcccatctca<br>g	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	50173371	50173372	1001730	0	-	1104685511213	NA	NA	SINE	Alu	AluY	atgtcccacctccagccctaaggcggtttttccctatctcagtagatagaacgtacaatcgggttttataccgagacattccattgcccagggacgggca<br>ggagacagatgccttcctcttgtctcaactgcaagaggcatgccttcctcttatactaatcctcctcagcacagaccctttacgggtgtcgggctggggg<br>acggtcaggtctttcccttcccacgaggccatatttcagactatcacatggggagaaaccttggacaatacctggctttcctaggcagaggtccctgtgg<br>ccttccgcagtgtttgtgtccctggatacttgagattagggagtggtgatgactcttaacgagcatgctgccttcaagcatctgttt<font color="green"><u>AACAAAGCACATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCCCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AACAAAGCACATC</u></font>tgcaccgcccttaatccatttaaccctgagtttgacacagcacatgtttcagagagcacagggttgggagtaaggtcatagatt<br>aacagaatctcaaggcagaagaatttgtcttagtacagaacaaaatggagtctcctatgtctacttctttctacacagacacagtaacaatctgatctct<br>cttgcttttccccacaattaccaccctggcccctttcccctcacctcatctccctccattccaatcttggcttcatctggcactgcaaggggcttcaccc<br>acatgcttgtggatacttctcttccaaactctgtccacattccccacaaacagacaggccaccccatggctctaggtgtgtggagtctgctgttgaggag<br>aag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	69670764	69670765	1001731	0	-	1104685500867	TCTGGTGGATGCTAATAACTGG	CTTGAGAGAATTGCTGTTGGTG	SINE	Alu	AluYa5/8	taaggcaatgttataacggattctggcagaaagtcagtaattgctatgaggtgcttgattccttcctgctgattgtcactgaaaacaattgaaaatcatt<br>ttcttgcatatgttagtgctacaaactagctctttacttttgacaacactcagttccaaatcaatgactttttcaattattcttattccttcaattttta<br>attcttttctgcttgagagaattgctgttggtgtctcaattggtgctcagcattttcttaatgtaggtgagttatttggaagaatattttagagaaaatt<br>ctctttttgactatattatagcttcattgctgtgctaaatacgtgtacttgattaaaagaagaaaaatgcttgcacattctctctgt<font color="green"><u>AAAAGAATGAATG<br></u></font><font color="red">TGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATGAATG</u></font>caaatactgactgtagtcacttaaaatatacaacacagtcacatcttaaaatg<br>tctgaaaagtacttcagtagataaatttgttcaacattgtttaataaatgatttcaccatttaacctatttttaaatttattgccagttattagcatcca<br>ccagaatttataggtggtttaaaacatttgggcaatggataacatttcttgaggaattctaagaggaatatcattgtgggttaacacttattgaagaaac<br>tgtatgtcaaaaactgtaacactatatcttatgaaattaaatcactgagtttatttcagtacccacatccatgttgttggacttactgtgggagaaaata<br>tgtgtgtgtgcacgcatgtgtgtgtatacaataa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	494	348	NA	intergenic
0	chr13	57589026	57589027	1001732	0	-	1104685360442	NA	NA	SINE	Alu	AluY	caaacctgtactttctgcacatgtatcttggaacttaaagtaaattttttaaaaaaagaaataattaataattacaattacaaaaatctggactatccaa<br>taggatatgtatttctgcattttacaattcagaaaattgaggttcaaggattaggtgatttttcataatttgaaatgaataaattaagataaaattaaga<br>caaagagccaagcttcctaaattctttttatttttactttttcctttattgcagtatgcagcattcatgtttaaaacagtgtttttactcatattattgt<br>ctctgtatgccctcctcttcattaagttttgaaggttgtgttagttattggtttctaggtaacaaattacataaacctaatagtc<font color="green"><u>TATACGTGATTTTTT<br></u></font><font color="red">AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>TATACGTGATTTTTT</u></font>tatctcacagtttttgtggattgaaagttcaggcttaactgagtgtgctctctggggtatcacaggttgcaaacaatttgtt<br>agctaagttgtagtctcatctgaacatagggaagaactcacttccaatttgacacagttttgttggcagaatttattgccttgtggttatagaactgatg<br>gtttcaacttcttgttgtcaatgggaggctacactcacttcctagagaccactctcatcttcttgccacacaagcctgccaacatgttcacaaacttctt<br>aggagccatctaagacagaggcaaataatatagtgtaaccataagagtgacatcccattacattatcctgccaatcctcatgaagaggggattacacaaa<br>gac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	46628995	46628996	1001733	0	-	1104685510248	NA	NA	SINE	Alu	AluYb8	aagatatttagtgagtaactcctatctacacacagtgggaggacagactgattttgcccttttgaagtttgaagggagatgggaaaagaggagcataaaa<br>taaacctgtaaccaggcatcagaaaactacagcctgaaggccaaatccaggtttttccattttttttttttttaatgattagaaaaaaacaaaaagaggc<br>caggtgctgtggctcatgcctgtaataccagcactttgggaggctgaggcaggaggatcacttgaggtcaggagttcgagaccagactggccaacatggt<br>gaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggcaggcgcctgtaatgccagctacttggttggctaatgcat<font color="green"><u>AAGAATTACTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTACTTGA</u></font>cctgggaggtgggggtggcaatgagctgagattgtgcaactgcactctagcctgggtga<br>cagagtgagactccatctcaaaaaaggtcgaaactgtatttatcatgaacactaaaatatgtacacattttagttaacatgcattaaactgtaacaagtc<br>ttctggcaattgtagctttcatgagatgcttcccaaactgtattagatagatgctaaaattataaattaaaattttgggtcagactttgccataaacctg<br>gactcaatttagcacccccccaaaaaaagtcagattattcaattaatgcggttggaaaacctaacaagttacctagaaaaaaattaattggattattaac<br>atgtctttcaccaaagtaaattccaggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CPB2:NM:016413:9/11	
0	chr13	46647748	46647749	1001734	0	-	1104685510256	NA	NA	SINE	Alu	AluY	tttggggtttctttgagcaggtttctggaaaagaacaaacagccaaaaatgccatatggattgactgtggaatccatgccagagaatggatctctcctgc<br>tttctgcttgtggttcataggccatgtaagtattcacattctcttaaccctatttctcaaaatggtgcccaagatcacctgtgtcagactcaactgggct<br>atttattaaaatgcattttcctaggtcacatcatgaagcttgggaatctacaattttcacaagtttcccaggtgacttttatgcattagtaagttgaaga<br>acatgacttcaagcatttaaatcacccaaaatatttttggtcttttctacatttctgcctggagctaaacagtggaaaatgatt<font color="green"><u>AAGAAATAGTACATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAAATAGTACATTG</u></font>ttataatatgtttactaagtagaggaaaggactgaaggagttatctaagttggggcccaattaatttatttctcttttggtttt<br>aattatccagacatcttttgccacctttgcccttggaaattgaacataaagcacaacattacagaggtgaaacagaatatgttttctcatatgtcataat<br>agggaattttcttcctgaagaagggttttgcatcaaaaaagccatatataagacaaactgtatgttggaaaagtaaaagatataacgactattaacctcc<br>ctgatgaatgaaaacagtaaaaattatgcttcaaatcctataaaatgggcatatatgttctctacactgatttctacaaagaatcatagccactggaaaa<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CPB2:NM:001872:6/11	
0	chr13	58621067	58621068	1001735	0	-	1104685360176	NA	NA	SINE	Alu	AluYb9	tttatatttgctgtttcctgtgcataagcactttaagcaaatcattatttaatctttccaaaagctctattcaacaaatattctttatttgactactaga<br>caaggtactgtcctgggcactagggtgtgcaatgatggataaacaatcaaacaaaaaataataaataactcatatagtttatttgttacatcggaatgtg<br>attattcacattctccagagcaagaaacaacaggctgacagggattaagtgtgttccagggaattagtgactgaaaccatttgaatcaagatctatggtg<br>acttgaaagctcttgcaccttactacttcctcaccatgtaaatctagtgtaccatagaaattcaactaattttgattgattttat<font color="green"><u>AAAATGAATAATATT<br></u></font><font color="red">TCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAA<br>TTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGA<br>GATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGAATAATATT</u></font>gtgttttt<br>aattttaaaacaaaaaatttatttttgtattatacagtcatttcagcctccttaaaggcagagactatgacttattaaatttggatcttcgagtcctgga<br>aaaaaagcctggtgcatagtaggagttcaataaatatttactgaatttttttttacctttgatgaaaccaaaagcttaaagaggtagagtgatttgcgca<br>aaattgtccaactagatgttgaccatcatattctatgaccttactatgtatatctttcattttcctaatctgctgttaacgcaatccctccttctttgtt<br>tcttgggttcctcagtcccctatttatgtccatgacccattaatttccacccctccacattcctaatactcagctct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	108719819	108719820	1001736	0	-	1104685247818	NA	NA	SINE	Alu	AluYb8	caatccacttgcctcggcctcccaaagtgctaggattataggcatgaaccactatgcccagcccagtattttgagtttcttccttgtctcgtaatgttat<br>ggcagagtcagattggaaagtaagtcacaatatataggattaaataaaacccatctgatgagaatttatggtttgtagggcatgactccccaggtcactc<br>agatagaaatctggacaagaaaaaaaaaatcagagattagtcctcagaggtatttgtgtgtatctcagtattgttatttaaagaaagtaatttagaatta<br>tgatagcacttcattatgtgtaatatgattcatattttcacatttcttattatcatcatttgaataaaaaattcaaatgtgatttatttt<font color="green"><u>AATAATTTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTTCGGCCTGGGTGACAGGGCGAGACTCCATCTCAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATAATTTTT</u></font>atttgcttttcattagctaaggaaataacaaatatttgctatttgtttattggggcacatgaagtgaattatgaaactgatt<br>gcattctcttataattgacttccactcctctgacaccagtcttatctcccgtttactacaacactgaatttcctacacaatttatatatctatttttttt<br>ctttcctttacatatgacatgtactattaccctgctctctaggaagagccttattttcaaccaccatagaatacatgtaagaattatttccaaagacaat<br>atttgtgatattctcttattttcacattcattcacatgagaaagaaggaataactcttctagatatctttatctacccactctttcattgagtttatgag<br>ctaattag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	111611988	111611989	1001737	0	-	1104685246968	NA	NA	SINE	Alu	AluY	tcgctgctccacagccctggggacaaagccgcgacacaaaggaaaataatctttttctgttctggccagagcaaaatacatgacaaaacatggacattag<br>ccactatgcttagcactcaatatcaaactggcaaagctcaagcttgcccccggttgggccccatcac<font color="green"><u>AAAAGTGATGGGGCCCTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGTCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAACAAAAAACAAAAAACAAAAAA<br></u></font><font color="red">TTTTTT</font><font color="green"><u>AAAAGTGATGGGGCCCTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTA<br>CTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGTCTGGGCGACAGAGTGAG<br>ACTCCGTCTCAAAAAAAACAAAAAACAAAAAACAAAAAA</u></font>gacccatcacttttaatccaacccccaaccgggagtttcaacttgtggtctctgggcaaga<br>tggtcgccctgagtaatagaaaagataagaaaggaaaaggaaagagagagaaagcagtgcctgtggcagggtggggaaggtgaagagctcaaggaggcca<br>gagaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	78584671	78584672	1001738	0	-	1104685165777	NA	NA	SINE	Alu	AluYa5	ttctgtcctccttaactgcactgatctgtccagtacacacaatctctataatctcttttattgtcctaagcaatttagctttgactctcagctttgttct<br>attgtcctgagcaattcagctttgactttcagcttgcaaacctcaagtgaaaaaaataaagaaaatcagaagtaagatgtttctttccaccttaaaaagc<br>ataccatccattgtttcttaagagtgttgagggtttctgtctcagacctcatcaaagtcttcattcaaaacattttttttctttatagtatttagggaat<br>agggaaaagagggaggttccattgttaatttttaaaaaattctttttataatttttgcatatgtaatttatccgacctctgaattagctttt<font color="green"><u>AAGATTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGATTTG</u></font>tccactgagtgtaagttccttaaggaataatggtaatcatataagtcactactcatgatgttctagacactgaactaattcatt<br>tatgtaagacaaaggtcagcgaactacagaccacaggccatatgtgattcattgcctgtttgtgtatggcccacaagccaagatgacttttacattttta<br>aatacataatactttaaactaaaaagtgtttaaaaacaaatgaaagtttagaaagcatattctgaaaaggatcagctattataatgatatgaagatatgt<br>gccatacactgtaattttctatttttataaattttaaaacaagttatatcttgatgtgagcttgataaggatctctcctcctctctactgcttttttttc<br>ccaaatag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	79271601	79271602	1001739	0	+	1104685165991	NA	NA	SINE	Alu	AluYa5	tatttattatgacgagtctttcaattcataaacacagtctgtctgtctctttatatatttaatctccttggatttacattagcattttgtaattttcagc<br>atacagattgtgtatatgttttgctaaatttatacccaagtattttaatttcattggcatgattgtgtgaagggaaattttaaatgcagttagccttttc<br>ctatcccaccattgtattttatgtgtgttgggtggagggggtatacaacttgtattttagtttgtaggatgtcagattgagaggagacacatctagatgt<br>gatgaagaggactgggcatcttctagaattccagggcattgagacacatttaataactggaggaagttttggattgtctgtctt<font color="green"><u>AGAAATGGGCATATTC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAATGGGCATATTC</u></font>tacatatgtgatgacaggtgcacatggatctttcggtgtcgtgtccaaagagatgaagtataccagaaattatctcataa<br>tagtctgtgggtttttttttggcatagtaatacaatttttagtttacaaaatcacctaattagtgacttcattttccagcttctcttatattttggtgtg<br>gccatgtgatttagctctggtcaatgggataaaagtgaatgtgatatatggaattttggaactgtacccacaaagggaaggagtgtactcatcatattcc<br>ctcttccttttttccttctgcctgaaacatgaatgcagggttgagcactgtttgaggagaatgacgacaacactccaggatactgaaacaataagatgga<br>agga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	92161676	92161677	1001740	0	-	1104685252604	NA	NA	SINE	Alu	AluYb8	atccaggtaaactagatacctggtccaatgcccaatataaagcatatacaaagattataataaaatagatcatgactaatttttagtattcccatgtgac<br>taaaatggctttgaataaaaatgttactttagaaagagttaagaaatatgattagtaatagtttaatataaaactcttttgagcatttagtgttatatta<br>atattgtcctaatgtaacatgaaaaacaaggtctcaaaatgaaatattgctttcccagaattctaaaattaggttattaatcacatcaacttttcatgaa<br>tatctattatagcataactttttaaacagtaaaacttttcataagaatgcctatgcaaatatgactatctcactatttgatcct<font color="green"><u>AACATATTCATATTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AACATATTCATATTTT</u></font>aagccttctttatgagcacttttaaagacctaattgaagtaacttcatagaatattttgagatagtctcacagtga<br>acccaagtttgtttgcaaaagtttttttttgtttgcaacagttatgtagtagtttgacctggtatgagctctgaggattgcatcctttatattttcaatt<br>taataataaaatattcaagaagtgctcactactatacctgcaattttggggcattagaataataaatttaagacttatagggaatattagtggtagcctt<br>atgctactcctgcttcttacaggaaagattccagtatcaactgtgaactggtattccagtctttgtctcaaccttcaaggctcaaaaagcctttataaca<br>ttttacca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPC5:NM:004466:2/8	
0	chr13	81373732	81373733	1001741	0	+	1104685166556	NA	NA	SINE	Alu	AluYb8	aaaaaccttgtagaaaaattatgttttgccttgttaagaaaaagctgacccaaatgtcagaacacagagacacagacttaagataaaaaatgactcaact<br>ttttctctgccctttgattaaatctataacgccatcaacattaccccaaatggatattttgagagttgattttgtgtaagaaatcgtggatgcaagacgg<br>aaacaactgccaaacagtaaggcaaaaaaatatgagtagagacaaaaaaacaaaacaaaacaaaacaaaacaaaacagaactgacaccatcttctgctcc<br>aagtaagattacaaatttcaaaaacctgaaaaaaaatgtgatgttaaaaaagcgaaggcaatcaattggatgacattaaaaatatagaatgaact<font color="green"><u>NNNNN<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAGAATGAACTGAGAAA</font><font color="green"><u>NNNNN</u></font>gtttaaaatacgtatgtgtagagggtgtatacttctggccatgatatagtaatgggtgctgtgtt<br>tgcattttcttttaaaagaataagagaaaaaaatatgatacactgatttttcagacttaggataacaagccaaaaaacgaataattgttgaagggaaata<br>attgggataggtaccccaacattttgctgaggatggttttcaggatgcaatacaggcagggaaaatcaagcaggcctgtctgttccttggaggtaaagat<br>cagaatttggagagatcaaactgatagaattttgggggcagcatagttggggcggtggggggaaacgagctacatcaacaaggcttcaaagatctccaga<br>aagtacctcttgaatttttggctacatagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	92513981	92513982	1001742	0	+	1104685252518	NA	NA	SINE	Alu	AluYa5 	tactgtcatttatctatttctcccttcagttctgcttactttccttcatgaattatgaggctttattattaaatcagtgccccctttggcatattattgt<br>cctctcatgaattggttatttcataattatgagatgcccccattttctctgataatgcatccccttttccagtttacattgtattttgctgatacagcca<br>cacaagcttcctaatacttgttgtgtatatggtttatctttttgtataggtttacttttcacctatctgtgtctttatattgaatatatgtttctggtag<br>acaacattagttgggtcttcttttcttgtctaatatgacaatctctaccttacaattggataatttagttcataaatatgttaaat<font color="green"><u>TAGCAACATGTTTT<br></u></font><font color="red">TCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAG<br>CCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAGCAACATGTTTT</u></font>tttttaaaac<br>tgtacaatctgtttcttgtttctcttctcttatttttgtttaattgtgttttaagtactcattttaaattgcatagatgagttagttgcagagctttttt<br>actgagttatttgtcttacagtaattatcaatttatagttaactaatctaaattttacttggaggtttttttttacaacttcatatacaatgtaaaaaac<br>tgatgacagtaacatttcctttattccctctatgtcctttgtgattgttttagtataaatttttctatgtacatcataaaccccacaataaaatgatatc<br>tttttaaattttaatagtttcccttcaacgaaattgaacgataaaaaaagtattttctgttactcatatacttatc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GPC5:NM:004466:5/8	
0	chr13	98734911	98734912	1001743	0	-	1104685250840	NA	NA	SINE	Alu	AluYa5	ttaactacagctaaatataataattcattttcatgaaatttttattttttagtgatttgtcttagttgttcaggctgctaaacagaatgtcatagaatgg<br>gtgacttataaacagcagaaatttatttctcacagttctgggggctgggaaatccaagatcaaggcgttcacagacaccttctagctgtgtcctcatatg<br>gtagaagggacaagggagctctctgggccctcttctataagggcacgagtcccattcatgaggctttgccgtcatgacccaatcagtccccaaagtcccc<br>atctcctaatactgccaccctgggaggaatccgggacgtgaatttgggagggacacaaatgttcaatctatattaggatt<font color="green"><u>GACAGTTTGCCATTAACCTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GACAGTTTGCCATTAACCTT</u></font>taggagttttaggtaaaaagtgagggacaagaaaagagaaatattctgtgcattagactcacggatgtgatatgtgactg<br>ctcctgtcttattcttcacaccatgtgactttttaaaatctacgaaaagcctattattttttaaaaaaggatacataataccaaaaggtgttcaattata<br>aatattttgttcttacttaagtcacccacccgctaagaccaccctccctcaaggtagccactgatacttacatccttccagaaatgttctatgcatgtga<br>gtgtgtgtgtgtttgtgtgtgtgtgcatgcatgtgtgtttgtgtgtgtttgtgtgtgtttgtgtgtgtgcgtgtttgtgtgtgcgtgtgtgtgtgtgttt<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	47836094	47836095	1001744	0	-	1104685119960	NA	NA	SINE	Alu	AluYb8	agaaaattccaaaaacttatcataccctgaaacaagatggatgattgctcttgcaaagacaaagaatacaacttcctgtgaaattactcataagagttaa<br>tggattacttaatcccagtatattttaactgtttatcataaaataaagaataattaagatagctcagttatatttgcattactctgccaatgttaacagt<br>ggttggctaatgaactcagattttattcactactgtcagtcttttacttgatgacagatgattagtctatggaacacattattagttctaacaatgtaga<br>ttaaggtttctgctcattactttttattttcacatacaaattctatttttttgttgtatgcaaaactagtaggccaaagtcaaactaaaagtaa<font color="green"><u>TTTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGGTTTT</font><font color="green"><u>TTTCAT</u></font>atatctaacttttagtaaaacatagtatcaaacataatctttaaggtatttaaatctgcttggagataag<br>tactgttacgtgacttgaagttcatgtaatattttaagtgcttctaaagaaataataaattcacttgaaaaaggcaaataataataacaataataaaaac<br>tgtactcaatctgtactgatttataataaagagccagaagacaaaatttagtattatatactttaaaaatatagtacatattttttgtaacagacgaata<br>tgttatattgtcccttttattgagtgattagtagagcacttactgaactataacctcctggtaaaagtagccaggtgaagggcgaagaaaataatcaggt<br>aggcatcctcatttggcttttatt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MDGA2:NM:001113498:1/17	
0	chr14	51432096	51432097	1001745	0	-	1104685121083	NA	NA	SINE	Alu	AluYb8	gagggtggagagcccagcctgctgaggttatatgaaaatgctacaccattttatatcagggacttgagtatctgtgaatttcagtatctcagggaggtcc<br>tggaaccaatgcccccgcagacactgagggaccactgcagggaggccctgccaggcaggtgtgccagataggaatctttggctacaaaaacacccaacct<br>gactgtggctgacctaaaggcatagaaggaatatgcgagaaagacatggggcagctcagaaagatgggaacgagggcagctctggggatcaaggtagcag<br>gaactgatgaatatcgggtcttatcagagactgccaagggggcgcaaaagctccagctcatcctcattttattgtctcactgctc<font color="green"><u>AAGATTTAATTCCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGATTTAATTCCAG</u></font>aagatggtgtctggttttgcttgtatcctgggtctacctcttagctgagggagggcaggacatcaccacttagaatt<br>ccagccactgaatccaatttgagtgctatttctagaaaagtagggatggaggcttggcagcaaaatgagcaaggacccctgcaccatgatgaagtatttg<br>ggcttattccaagtgtagcaggaagccactggtgggttttaagcaaagtgaagtgacaggttatatctacgtaatgttttaaataaatgaatgctgttta<br>gtctgggcctttaatttctgggatttttttttttttttctgaacaaaagtaaatgctttggaaatggcagaaagctgggagacatttacaatcgtagcag<br>agaataaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	51719000	51719001	1001746	0	+	1104685121138	NA	NA	SINE	Alu	AluYa5	tgtcttagagaaagtggttaccaatgggaaaatctataggccccggggcctgaaataacttgtcttttggtgttgaccatacaaactttttaaaagaata<br>ctgactctgatagaatcctttctgtgcaatatcgtggaatacgtaactggtgtacacaaagaggtaagtgttctcaaacaagatgggtaagtcagtgaat<br>aggcacaattttagaaactttaaaagagttgaacctaaggaaatgacagagataatactctacctcttttaggaagttacaagggaattcatttcttgga<br>aatgaaatttttaaaatgacttggctaattaatgtcaagctacttaagtttttctgtcctctattatgatccacagtaaaagtcac<font color="green"><u>AAAGAAATCTTTCC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGAAATCTTTCC</u></font>ctttaaatatctgttaatttggagggattgaaaggtataaagtaaagggttttttgaatgcctttccaaatcattcaaaaagaaggca<br>agcatggtctatgagccagagagatctgattgggcatcccaactctaccacttagtagcaaagcagtatgacagacattttttaccctctgagcgtgtaa<br>cctcctttgtgaaatgaaagtaattaaatttgcccctttggatcattatgacacttaggagataggtatgtaatgctcacattatcctagtaacatataa<br>gcagtaagcactatgtatatgattgtgtaatttatttttctttagtaatacaactgatattaatccagactttaaagtgatattgccatgccccttcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMX1:NM:030755:7/8	
0	chr14	20484312	20484313	1001747	0	-	1104685631081	NA	NA	SINE	Alu	AluYb8	ttagatcaaattttcctcagagatattatctgagaatatcagaaaagccattctacaacccacatataacacaataaatgagacttttataaaattacta<br>agcaacatacataagttgggtacatgatttgggagctcatctgtatttatacatcaccccccgcccatagtcgttatatccaaaacatgcgttttagctt<br>aaagtaatttttctcctttaaattttgtcattgaggaacaaaatttccttctcttggattcaggagaaagccacgttaatcatatttatatacatagata<br>catctacctatcaacatgcctttgctaggtttagttttgtgtttgtgtgtgtaaatggagagagaggaagaggaagagacact<font color="green"><u>TAATAATGTACATTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGGG<br>AACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAATAATAATAATAATAAT</font><font color="green"><u>TAATAATGTACATTCAG</u></font>ttcccatgtcttacgtgttgacatt<br>atttttaagtgaagctttaatttcaatatttagtgcttaagaataattaattacccattgggcaatgatatcgacagagatggtgagaagatagaatccc<br>tgaaaaaatcttcatattctcaatcctcctaaggaattttggttcacctactgcacttgattgatccatgtttttatatggacaaaggccatggaaagaa<br>ggaaaaaaaaagttcctacaactctcacctatgcagaagtcttccagaatgtctaactgcccctcaggaatcactgaagtttgaaaaaggcaaatataca<br>tgcttgttagtatataacagtctatattttagagtatcacttgcaagttaaaaattat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	promoter:OR4K14:NM:001004712	
0	chr14	32669247	32669248	1001748	0	+	1104685634630	NA	NA	SINE	Alu	AluYb9	tatgtctagatatatattttatagatatatctatatttatatctagatatatgtaaaatatatatttatatatctagatatatatctagctataaatatc<br>tagatatatatctagctataaatatatataatatgtatctagatataaatatataatctagatatatatatctagatatatatatctagattatatataa<br>atatataaatatatctgtataaaatataatatatatttgtatttatttctatctatctatctatctatatagatagatatagatatagctatatatagag<br>agagatagggaggctggggtctcactaagtttcccaggtggttttgaacacttggtctcaaggggtcttcccaccttggcctca<font color="green"><u>AAAACTCTGGGACCTC<br></u></font><font color="red">CCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAG<br>CTACTGGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCG<br>ACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTCTGGGACCTC</u></font>accaggcctacgaccatttataaagatttttctcccctaatggatttat<br>ctcctgccaaccttcaaacatttctttttcttgtatgtgctaagtcttttcccacttttcagaatggaaagagtttataagtcgtcatctgggaatgcag<br>cctaactctgaaggcgcatatagcttgtagggacatcaagttcatgaccctgtaactctgatcgtccttctaactatagattcttctaaccatgtatcct<br>ttaataaactgattagttgtaaggtttttaagagagaacatgaaagaattttgatatacttctacaatcataaaattgaacatcaatttactgcttccta<br>gctttgaagtcacaaagcagaaatagcttattgga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	39160769	39160770	1001749	0	+	1104685636400	NA	NA	SINE	Alu	AluYa5	gaataagtgtttagtaaggtcccaagattcaagatcagtcagtaaaaatcaattgtatttctatattctaacaacaaaagccttagaatttaaaatttta<br>aaaagcaataccatctgtaataacatcaaaactatgaaatatttagaaataaatttaacaaaatatgtgcaagatctctacactgaaaatacagatgaga<br>gaaataaagacctaaataaatggagagagatagaatattcttctaatactttacattgttcagatgttattgttccccaaattgaccaatagattcaaaa<br>cagcaccaatcaaaattgaaatatacttttttggcagaaattgacaagctataaaagtgaatagccagaaagaaatgatttt<font color="green"><u>AAAAAAGATGAACTTAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAGATGAACTTAGG</u></font>agaccaacactacctgattacaacagctgcaataaagctatagtaatcaaggcagtgtggtactggcatgaggaaaaacacatag<br>gtcaaagaaacaaaatagagagctcagaaataggtttacatatatatacctaattagttttaaaagaaaaaggtgccaaggtaatacaacggaacaagaa<br>agtcttttcagcaaatagctacataaaaagaaaaatcaatctcaaccgttaccccataccatctataaaaattaactcaaaatgaattatacacctggat<br>ctaaaagtaaaaacctgcaaaatttacagaagaaaccctcaaacatcttcataaaggtagataaagattttttcaatgatgaaatggataaatcatt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	92125069	92125070	1001750	0	+	1104685285770	NA	NA	SINE	Alu	AluYa5	aaatattttaaaaatggaactcacagacatagagagtagaataatggttaccagaggctgggaagggtagtggggcattatgtagggggagaatggcgat<br>ggttaatgggtacaaaaatatcattacatagaatgaataagatctagtatttgacagcacaacagagtgactacagtcaataataatttattatatattt<br>taaaataactggaagaatataatttgaatatttgtaacataaaggataaattcttgatgtgatggataccccatttaccccgatatgattattacacagt<br>gtatgcctgtatcaaaatatctcatgtatcccataaatttatacacttactatgtacccacaaaaattaagaataaaatattttt<font color="green"><u>TCCCTTCCTTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>TCCCTTCCTTTTTTT</u></font>gagaaggaagaaactaacagcttgtaaaagataaaaagaatcaagttgagacaaagcacaccccaagataggaggtaaatttac<br>ttccatattctgcctcaaaaaatcttaataaattaaattcaacaaaacaagatctcaaagactcaataatagaaagacaaaataaaatgaaagtgcaggt<br>cgcaaacatacagaaataaattgagaatcatgtccctttatcactctagggtcctaggctggttagcaaaattcaactgagttggaaaggagtgggcaac<br>tatcattaaggtcaatcaatattaactgttttgagatttgctaaagggttcaaaattacagccagataggaagaataaattttagtgttctataccactg<br>g	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CATSPERB:NM:024764:15/27	
0	chr14	63221692	63221693	1001751	0	+	1104685124156	NA	NA	SINE	Alu	AluYa5	gaaaataaaaaaaatagagccaggaatgctggctcatgcctataatcctagcactttgggaggctgaggtgggcagatcacttatggtcaggagttcacg<br>accagcccagtcaacatgcaaaatcccatctctactaaaaatacaaaaaaaaatagtcaagcatgggggtgtgtggctttagtaccagctgcttgggagg<br>ccaaggtgggaaaattgcttgaacccaggagacagaggttgcagtgagctgaaattgctccactgcgctccagcctgggtgacaaagcaagtctctgtct<br>aaaaataaaataaagtaaaataaaataaaataaaataaaatagaaatagctatacttacacaaaatagacttcaagacaaaaactata<font color="green"><u>AAAGAGACAAAG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAGAGACAAAG</u></font>aaggtttataagtgcctacatcaaaaaagaaggcaagcttcccataaacaacctaatgatgcatactgaagaactagaaaagcaagag<br>aaaacaaaaccaaaatttagtggatgaaaagaataataaacatcacagcagaaataaataaaattgaaacaaaacaattcaacaaatcaatgaaataaaa<br>agttggctatttatgatgataaacaaaattgacaaatataaaaaagagagaacacccaaataaataaaatcagagatgaaaaaggataaagtataaccaa<br>tacagcagaaattcaaagaatcattagaggctactgagaacaactacatatcaatagattggaaaacctagaagaaatagataaatgtctagacacatac<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KCNH5:NM:172375:9/10	
0	chr14	63226299	63226300	1001752	0	-	1104685124158	NA	NA	SINE	Alu	AluY	gagtggggatgcaggtggggagaaaagaaaagtgcctgacatgggcctatccccgccgttcaggtgaagctggcttcttcaaagtgtttgtaaaaaaagt<br>cacaaaatggatgtttgctctggtgaaaaaactatgaaagtagatttggatttggtaattttgcaaagctgaaaaatctctgttgttgggttcctgagtc<br>attctactcagcttgctcccttaaagggctcttttaaattttgaaccagcaattttatggaggttggtaacagtggtgatgatcagataatattgaaaga<br>gagagagaaagaaaggactgtaaaaattcaaaaattcaatcaggacaagtttgtcagcagaaaagacttaaacaaatgtaattatt<font color="green"><u>AAAAAATATACCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCAAGACCATCCTGGCTAATATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCCCTCCAGGCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAATATACCCT</u></font>cgcctggagggtaaaccagctttatgatatcaaatggaatataaaggatttgaattttcagcttttgagcaaatgttataa<br>aacaaatgtgccaatatccttctgtaagcacaggcacctcagtattttccataatcaaatagccatgccccagaaataaattcataattgatgccacagg<br>atttcaaattatctaagcattctctcattttcttaaaggctcttcagaaaaaatatgcctaatttagaaaactgctactttagtctggatttcagacagt<br>gggactattcaatcctcaggtgtgcttcagcttgtcaaaaacacagctgactaattttgatgaaagaagaccagagatagatttaatatcttaccaaaat<br>aagtc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KCNH5:NM:172375:9/10	
0	chr14	75499582	75499583	1001753	0	-	1104685290308	NA	NA	SINE	Alu	AluYa5	aattgaaagaatgtggtagttcactaattgaaagatgtgaacttatttatgtggtcagaggcatatttgccagatgttattaacaacccagaagtacgca<br>aggataggctgcttactctgacatccagcacaaagttctgcccctccatatgcccggtgatcttggcatgccttcccacactccatcaggcagagaccag<br>tggcagctcagaaggcccagtatgctgttttgattttaaaatttagtttgctttggaatatgcagtataatcaaatagatccaattttgaaaggcacaaa<br>agggaatataataaagtctcctttctatccttgtccccacccctcctagtttctctccccagagacaaccaatatctctggtttt<font color="green"><u>TGGAAAGATAGATTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>TGGAAAGATAGATTT</u></font>aagcaatatatgctttttaaatgtttttttttgctacccttttcctcatcatgaggcagtgtgttcaccaagtg<br>gtaaaataccaggaaagtctttactcctgtggccaatgagtaatgtcaaagagttaggcaaggacctaaggagtgcttcatggactagaatggcaatgat<br>attactactgttttcacttttccttataaaatgacggcctaagagttgggaaagatatagtaaaaacagtgttagaaaaacttacctctacaggccctgc<br>accatttgagaatagtactaattctctccagagactgggagaccctgctcaaggaaagggaagccttctggagccataagactgtgtggtcaacccacat<br>atgttcctggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	60532404	60532405	1001754	0	+	1104685123387	NA	NA	SINE	Alu	AluY	agacaaattgagcaagactccatctcaaaaaaaaatttttttttcatctaaatttctgagtagctggaattacaccaccacgccaggt<font color="green"><u>GTGGTTCACGCC<br>TGTAATCCCAGAACTTTAGGCGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACAAGGCAAAGCCCCATCCCTACTAAA<br>AATACAAAAATTAACTGGGAATGGTGGCGTACACCTGTAATCTCAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCTTGAACCAGGGAGGCAGAGGTTGC<br>AGTGAGCTGAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCCTCTCAAAAAAAAAAAAAAAAAAACTGTAAAAGAGAGTAAACTATT<br></u></font><font color="red">TGCCGGGCGCG</font><font color="green"><u>GTGGTTCACGCCTGTAATCCCAGAACTTTAGGCGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACAA<br>GGCAAAGCCCCATCCCTACTAAAAATACAAAAATTAACTGGGAATGGTGGCGTACACCTGTAATCTCAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCT<br>TGAACCAGGGAGGCAGAGGTTGCAGTGAGCTGAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCCTCTCAAAAAAAAAAAAAAAAAA<br>ACTGTAAAAGAGAGTAAACTATT</u></font>ttattcatcaaggtatttcacttagataaaatgtataatttatccagtaaagttattatgtctttgctcccagcaaa<br>tgtcttgattt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	44823525	44823526	1001755	0	-	1104685389491	NA	NA	SINE	Alu	AluYa5	tcggccttccaaagtgctaggattacaggtgtgagccacgcgcccggcccctttatagcttctttttaagaggaagtaccttaagcatcagactcaaaat<br>cttataaagatggactaggttaaggctgaagagcagattgttttaattggaaataggggcaggtcaaaactcctatttataaaagtgcaaaattatggag<br>tcattgcatgttttttctaatgatttcttgggaaaaagagtacatgtaaaaacaaattttggcagagcacagtggctcatgcctgtaatcccagaacttt<br>gggaggccaaggcaggcgggtggatcacttgaggtcaggagtttgagcccagcctggccaacatggtgaaaccctgtctctactaaaaata<font color="green"><u>CCAATTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>CCAATT<br>TTT</u></font>ctgagcatcatggtgcacacctgtagtcccagctactagggaggctgaggcgggagaatcgctggaacccgggaggcagaggttgcagggagctgag<br>atcccaccactgcactccagcctggacaacagagcaagattacatctcaataattaaataaataaagtttttgatttatatgatttgattaagttaaatg<br>aaattttttattttaaaccaaaacgaaaaaccaaaaccctacccccatgagtcttaagacacgaaactgtctccattcaacttccatatatttttccata<br>cttacagggtaccataaaatcctacagtaccttcctattcctgtctggccagcggaaaaaacatgccttcctcagggagtgcctaaaatccaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	38718005	38718006	1001756	0	+	1104685378789	NA	NA	SINE	Alu	AluYb8	ggcagggagagggagagagaaagaggtaggagaaagcgagggaaaaggagagcaaaggagggagagaggagagagaggagaaagagaaagtgaagatgct<br>acactgctggctctgaagatgtaagaaggggccatgagccaaggaatgcaggcagcctatagaagctaaaaagacaaggaaatagattctcccctcaaag<br>cctccagaaggcagtagccccaataaccccttaactttagcctagtgagacttatttcagacttctgacctccagaactgtaaaataataaatctgaggg<br>ttttttaaaaatagcatttaggctgtagttcccaaatctggctggtcatcagaatcacctgagtagatctatcttaaaggctatac<font color="green"><u>CATTTTTTTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGGGACAGAGGGAGACTCCTTTTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CATTTTTTTTTTTT</u></font>agtcatgttatttgcagcaacatggatggaactatagggaataagatacagaaagacaaatgtcatg<br>tgttctcacttatatgtgggagctaaagaagttgatctcatgaaggtagagaatagaatgactgatatcagaggctaggaagggtacataaagtgggtta<br>ggggagatgaagagagattggtcaatgggcacaaacatacagttagatagaagatatatgtccaggtgcggtggctcacgcctgtaatcccagcactttg<br>ggaggcccaggtgggtggatcgcgaagtcaggagtttgagaccagcctgaccaatgtggtgaaaccccgtctctactacaaatacaaaaattagccggat<br>gcggtggcacgtgcctgta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	45569924	45570184	1001757	0	-	1104685389322	NA	NA	SINE	Alu	AluYa5	ccttacagcagtgtcactgtctttacctataaggtgggtctcactatctttattttatagatgaggatgccaaggcacagagaagttaaggaacttgtcc<br>aaaatcaccttagtgataactggcagagcttgaatcagaattcaagtaatctggcgtcatgtccaataccactaaccattgcattctgctgcctctcaga<br>aataaaccaggcatagagtaaaattcatctgtagttcaagaaacaatttattgaagcttcctttttctgtcaagtttggaaaacgggagagaagatagga<br>atcgagactgagaagacgaccaagtggttctgagctgagagaactgggaaattgaaggacgtagattagctaagggaagatacaagtacctgaat<font color="green"><u>NNNNN<br></u></font><font color="red">TAAAAATTTTTTTTATTGAGGTGAAATTCACATAACATAAACAGCCATTTTAAAGTGAACAATTCAGTGACATAATATTCACAATGTTGCACAACCACCA<br>CCTCTATCTAGTTCCAAAACATTCCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGA<br>GATCGAGACCATCCCGGCTAAAACGGCGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>attcccatcaccccaaaggaaaaccccaaactcgttaaggagtcactctctaatccctccttccccag<br>gccctggcaaccaccatctcccttctgtctctatggatttatatattctgaatatttcatctaaatggaatcatgcaataataagacttttgtgtctagc<br>ttctttcgtttagcatgttttcggggtgcctctacatagcataaatcagtacttctttttttaatgggtgaataaaattccattgtgtgtatgtaacaca<br>atttatccattgatggacatttagactgtttccaatttttggctattttgaatagtgctactgtgaacatgcatgtacatgtacttgtttgagaacttag<br>ttttgattcttttgaatgtgtatgtag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	46126007	46126008	1001758	0	+	1104685389189	NA	NA	SINE	Alu	AluYa8	ttgaatggctatatgaactcaagggaacaagggataaactattaagactagagagaactctgcccctagaattaattctttgggtttttgattgaatcaa<br>tttaccagaaggaagcatcacatgtaaacagatcaggagaaggttgctcagtaaaccgagcaaggaaaattggacattattaagctgtgtttctcaatga<br>ggcatttggagaatcgctttgtgaacaatagatgttagtctacatcaaactacagcaaaccatgttatatgttctgaatctatcttcctgccagttttgt<br>atgtcccctgggctaagaatggtgtttagatttttaaatcattgaaaaaaaatcaaaagaagaataatatttcatgagatgt<font color="green"><u>GGATTTTGCATAATTTTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAG</font><font color="green"><u>GGATTTTGCATAATTTTC</u></font>aatttcaatgtccataaaaaggttttattagaacatagccacactctttcatttccgtattgtctgtggct<br>gttttgtgttataatggtagaactgagtagttaaaaaagaaacctaataaaccgcaaaggttaaaatgtttaccctctggccctttatagaactggttag<br>ccaacacttggtctgtatgatagtgttgcacaaggaaaaagttaagaatctctgctctcggctgggcacaggcctgtaatcccagcactttgggaagccg<br>aggtgggtggatcacctgaggtcaggagaccagcctggccaacatgggaaaaccccatctctactaaaaatacgaaaatgagccaggcgtgatggtgcat<br>gcctgtaatcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	40714909	40714910	1001759	0	-	1104685378311	NA	NA	SINE	Alu	AluYa5	ggctgcagtaagctgagatcacgccactgcactgggtgacagaatgagatcctgtctcaaaaataaataaataaacaaacaaataaaaatcctggcctag<br>ctgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggccggtg<font color="green"><u>GCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCG<br>GCCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACGGAGTCTCACTTTGTCATCTAGGCTGGAGTGCAGTGGCGCGATCCCAGCTCACTGCA<br>ACCTCCACATCTAGGGTTCAAGCGATTCTCGTGCCTTAGCCTCCCAAATAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTTGTATTTTT<br></u></font><font color="red">AAAAATACAAAAATTAGCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTATTTGGGAGG</font><font color="green"><u>GCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGC<br>GCCCGGCCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACGGAGTCTCACTTTGTCATCTAGGCTGGAGTGCAGTGGCGCGATCCCAGCTCA<br>CTGCAACCTCCACATCTAGGGTTCAAGCGATTCTCGTGCCTTAGCCTCCCAAATAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTTGTA<br>TTTTT</u></font>taaaaatacaaaaaattagccgggcatggtggcgggcgcttgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggagg<br>cggagcttgcagtgagccaagattgcgccactgcactccagcttgggcgacagagcgagac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	41100333	41100334	1001760	0	-	1104685378124	NA	NA	SINE	Alu	AluYg6	gagctcagatttgaacgctgactccaaaatccaggttggtgaatgctgcacggtcctgccttcctgcgtgacactaatttactccatctagttcccatca<br>tctcctggtcagaatccctggccacaactgaggcagagggaacctgcagtttaccagaggaatctggcaggtctgtgatagggacaggacagtcagcctt<br>caccatggtgccccggaagcaggaggaagtgtggtaatctaactccagcgacctggagaagggcaggctgcgggatggggaagatttcagagcagaggga<br>gtaacgggcttggtgtgatggacaccgcgcttcggaggagcagggtggagagaagaaaaccgccagatgctacactgggccgacag<font color="green"><u>CAAAGCTACTCTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AATT</font><font color="green"><u>CAAAGCTACTCTTT</u></font>caaaaacgacggcagcgcgctttacagtttatagggaactctcacctaaagcacttcagtggaccctcacataaaccctgaa<br>agcgagagaatgttagccccattttacagaaatggaaactgaggatcaatgacttcatcaaaaccacacagctggaaaggagccgtaagaccaagtcttt<br>ggacgttaagtcccgcgcttttccctcctctcctccctggccctgcagccctcggggagggaagactcgcctccttcttgaagagggtgaacttgacagc<br>gcagccgtagcacctactctccatggtggctcccagcaccgcagggtctgcagagctgagatcacgccggccaagtcctgggccccttggaccctcaccc<br>cagc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	promoter:DNAJC17:NM:018163	
0	chr14	106788860	106788861	1001761	0	+	1104685757469	NA	NA	SINE	Alu	AluYa5	agtccaccttccaaactctttatatatatatagtaaataaactttatgtttctcagagatgacactgtaaacagtcacagatttgcatacaatacaatta<br>tgtattggctatttacaatttacagtagtggttcttcctctgagaaatataagtacaaaagctaagtaaacaatgaggtactgccatttgggatttatta<br>tgtgtcatagcttaaagaactggcctttagcaaatattaaacaaatcaacctgaataaaatagtcaattaaatgatttatttttttctaatttattagaa<br>aaaattccaccaggtttcacctcaaaatgtattgcatacgtctaaaaacaaacttaaaaataaataggaaaggtaagcagttcttca<font color="green"><u>AAAGAATGGAAGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAT</font><font color="green"><u>AAAGAATGGAAGA</u></font>aaggaatagaatgaaagctcataaaccaggttaagtcattctgaatatcttttaaacaacataaaattcttcc<br>caacagaaaagtgaagaaaaaactatcaccatttctccactgataaaatctattttaaaggtagtctgccatatatcttctaaactctttctatgaggct<br>accatgatagtattaccagtaatagacaaaggcaccacaataaaagaaaactacagaccaatatcattagtagacatgaattaatccccaacaatagtaa<br>actaagctccaaagtgttttagaagacatacaccatgaccaactcaaatttcttcctgagatgcatacttgattcaacattctcaaatcaaccaatttgg<br>tacaccacattaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	98494391	98494392	1001762	0	-	1104685482894	NA	NA	SINE	Alu	AluYb8	atagggaattgttggaatgttatatcaagtatcacactaactatgtgcaattgagtggaagtgactaggcctgagtcctttttcctattcataccatggg<br>tatcgcttcattaatcaaagcttagcatcagtgtaaggagggcggatgtgattgcaaagcctcattatgtggctgactcagacatacaacactaagaatc<br>aattcatgacggccacgagttttccgatttttcaccatttctggggacttagaaatagattgtgaacaggcagaaacctctccctgtgctatgagtttgg<br>gtggtgtcatttcactggacaggctgggtgtggcaaagccagtggattccaaatgttccaagtgttccttttcagttcctacg<font color="green"><u>CCAACTCAAAGACAGTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>ACAAAACAAAACAA</font><font color="green"><u>CCAACTCAAAGACAGTT</u></font>atggttttatgatatgggtttccccagatggagaccccatgacaaggattgataggctagtagtatcct<br>aaaaagatgatctctggtgatgctgcagaggggaagaggtgagggcaagaaccagtggtgtatcaagccgacttccactgtagtcaactggagcttaccg<br>cattgggaactctagaaatcagtataaagagaccctcagaatcaccctgatggagcagtaaggaagctagggtgtttatctgctgcttctcctttcattg<br>ttggctgagggctactatcagaggtcttcattctcaggcactccctgctgaccctgcatgtgggcagaatcgtctcccatggcagagcagagggtggcaa<br>gaaaagcagtgtta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	22769075	22769076	1001763	0	+	1104685404886	NA	NA	SINE	Alu	AluYb8	ctacagtgatcaaaacaatgtagtatcgacaaaatgagacacacagaatgaggaaacaaactagagttcagaaatatagtcaattagtttacgataaagg<br>tgcaaaggcaacattggaaaaaggataatcatatcaccaaatgatgctggaacaactgaatatccgcatgcaaaaatgttaacttacactcattcctcac<br>tccatatgcaaaaattaacccaaaatgtattatacaactgaatatcagtaaacttcatcaaaattaaaatttctcctctgtgaaggacactgtaagaaaa<br>gacaagccacatactcagagaaaatatttgtacccagaatatataaagaactctcaaaactcaaaattaagaaaaaaaattttaatgaac<font color="green"><u>TAAATATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>TAAATATTTT</u></font>acagacatttcaccaaaaaaagtatctgtcaaataaataaatgcaaggatgctcaatatcataatcattacagtagtgca<br>aattaaaatcatactgactataactatgaacttattagaatgactagcatgaaaaatggtgagtatgtgaagcaattgaagtttttcatacattgctagt<br>ggaaatgcagaaatggcacaggaatcctggaaaacagtttggcagtttcattaaaatgttcaatacatacctatcatatatgcctcaaccatcctacttc<br>taagtatcctaatgaaataaaaacttaagttcacagagaatcttgtacacaaaaattgatagcaatatttagttataatacagattgagtatcccaaatc<br>caaaaatctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	28174978	28174979	1001764	0	-	1104685444806	NA	NA	SINE	Alu	AluY	atcaaaactaagactacagcaaacatcgtgttcaattctttgtgttaccttatgctttaatttctcttgggtaaatacttgaaagtggaatggtgggttc<br>atattggtaggtgtatggatcatgtttttaaaaactgccacgctgttttccggaatggttgaaccattttacactcccaccagcagtgcttgaaagttcc<br>tgttccttcatctccttgtcaacatttactttagtcagtgtttttgattttacacattctaaggtagatagtgaaatgtcattgtggttttactccacgt<br>ttccctaatggctagtgatatttgaccatcttttcatgtaatcatttgtcaatcttatgtcttctttgttgaagtgtctgtt<font color="green"><u>TCAAATGGGAAATATTTT<br></u></font><font color="red">ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>TCAAATGGGAAATATTTT</u></font>attgtgttgtttacttgttgaatttgagaattaaaaatttatatatatatattctagatattagtcttttatcag<br>atagatgatttggaaatattttctcccagtttgtggcatttctctactttaacttaacagtgccctttgaaaaacaggaattcataattttgataaagtc<br>caattaatatgatttttttcttttcatatattatgtttttactgttatgtctaagaaaacctttaactcagggtcagagattttttcctatattttcttc<br>cagaagttttatagttgtgttttacattcagacctataatccatttgtattaaatttcgtatatgattagtgagcagatcaaagtaaaagttcttttgca<br>tgtggat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:OCA2:NM:000275:18/24	
0	chr15	70408631	70408632	1001765	0	+	1104685381979	NA	NA	SINE	Alu	AluYa5	aaggctgtatgattccagctagatgacattctgggaaaggcaaaactatggacacaggaaaaggatcagaggctgtcaagggttaaagggaagggaggga<br>tgaataggtggaccactggagagtttcaggacagagcaactactttgtgtgacactttatacatttgtcaaaatccaaagaatgtacaatatcaagagtg<br>aaccctaatgtaaactgtggacttcacctaatcatgtatcactattggttcatcaattatagtaaatgtactatgctaatgcaagatgttagtaacgggg<br>gaaactgggggtgaagtgaaagggtgttggggaattctactttctgcttgatttttctgtaaacctaaaactgattttttttaaagtccttt<font color="green"><u>TTTTTTTT<br></u></font><font color="red">AGAGCGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGC<br>TAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>TTTTTTTT</u></font>agcgtcatgaagtgtaatcacggagaaatgcataggtgttatgggagcaatctggggtagggggtggggagggcttgggagcatgg<br>gggtcactaatgaagtcaagacccttgtatgtaaagttagacagacaaagtttcaagttccacctctgccacttatccaccatgtagccttagccaagtt<br>acttaacacctcttaaacctcagcttactcctctgtaaaatggggctaatgacgcctgccaccaaattattatgtgatttaaataaaatgcaaataaagt<br>acttggcactgccagtgatgagagtcagtgcttggcgaaagagagctccttttcatgccatggtgggtgaggaggctggctcaggtggagagcaggagga<br>gaaagc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	60657260	60657261	1001766	0	-	1104685385223	NA	NA	SINE	Alu	AluYa5	actgtttctttcattaaacaaagttattaatcagtcaggagagagacttttcacattctgaatttacaaactgtgctttcttaagttaaatggcatgtta<br>ggagtatttctgatatgaaattggaaacttgcagacaccagaaggcattgcttatctttgtaaatacacatgttccaattaaaataggtactaaaatatt<br>ttggtggcacctcaaaactcccaatttagatttaatttagattaaaacacttactctttttaataaagttataaaattaattattaaaattgcctattga<br>agattaaaggcagtggaacgtttattttccttacaaaacaattttgtcttcaataagtgtgattgtgttaatcaattatgctat<font color="green"><u>CGGCAGTTGTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>CGGCAGTTGTATTTTT</u></font>tattaaatctgactcatttgtcatgacagtttttataattatagaaattatacctagctgcttatatagccataatcctgca<br>ataagtataaataattatctctattaattcagtttgcagttactctctattaaatcccgagttaaatggcaatttggggaccttcatttaaaatcctact<br>aaatctctgttgttccatctgactgccaaagccccacatatgcacctcctactgttgattccagaaaccaatttatgaataaaatagtttttaaaccaca<br>agtatttaaaaggtccatttaagcttgaggtttgaggctctcaagaaaaaaggaaagagagtgtacacattgggtagaggatgctgacgaaagagataga<br>ac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ANXA2:NM:004039:3/13	
0	chr15	61216545	61216546	1001767	0	+	1104685385055	NA	NA	SINE	Alu	AluY	ggcagagctacgatgactgaccatgatcatgtgtgagcacggggcagtgtgttttaaggggtgagcactggcagaggtgggtccagaaagggccagccca<br>ctgaaaacttcccaagtgggtgaaactcaccttggcacttgctctcctctctcctgccctctatcccataccccatgtgtagcattccattcaagaaaag<br>aactctgactttcagcttgttgacaacttatctcctgaaggtgttagctgacaacttttctgaggcagaagatgtgaccaatataggtgctgggagaacg<br>gaaggaaggggttgagttacatttattcagtactttttcactcatttaaaactaagcacacaactgagaggagtactcttctactttt<font color="green"><u>AGAACATTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGACACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAACATTTCTT</u></font>attgtatcactgccactaatatacgcttatagtctaaaaatatagaaacagatttgaacaaagaagaaaactaaagtt<br>acacatactatagtcctttaaaattttagagccttctagatcttttcatatatttataagtgaatatatttcttacgtgcctgtaatcatacttctgctc<br>atccgatttaatgtaattctattgtatctgtaatggaatagaaattcttgtccttggataagtcactggccctttctatcctcagattcctcattaatca<br>gtaaagcacgaatacacaggaaaattaagtcgtgaagcactaaaccacagggcggtgcgtggaggcagccaggccatgtggtggaaatactgtgaactat<br>aacaaccata	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RORA:NM:134261:1/11	
0	chr15	56833674	56833921	1001768	0	+	1104685386441	NA	NA	SINE	Alu	AluY	ctaagaaaaattcttctgccttgggatgctgttaatctataaccttacccccagccccgtgctctctgaaacatgtgctgtgtcaactcagggttaaatg<br>gaataagggcggtgcaagatgtgctttgtcaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggac<br>acaaacattgcggaaggccgcagggacctctgcctaggaaaaccagagacctttgttcatgtgtttatctgctgactttctctccactattatcctatga<br>ccctgccacatcccccactctaagaaacacccaagaatgataaattttaaatatttatttttcctcttttaaaaaagatcaaaaatgttgactct<font color="green"><u>NNNNN<br></u></font><font color="red">GGACTTTGGTTTTTATCAAAGGGAAACTTTGGAAGTGTTTATTTCTTGAAATCACTATTTGGATGTTTTACAGCTACCTCAAATCTAATATGTTCCATAC<br>TACTATTTTGATCTTTCCCCACAATATTTTTGTCTCTATTCTCCCTACAGCTTCTTTTCTTTCCAGTAGATCACTCAAGCCCAAACCTCGTTGTTCTCCC<br>TGATATTTCCCTTTCCCCTTTCAATGCATCATCTTCCACACTTAATTTGCTACCAAGTTCTCTTCGTGGATTCATGTTCAAAATAACCTCAATCCTGGAC<br>ACTTCTCATTAGCTTCCACTGTCATATCTNNNNNNNNNNNNNNNNNNNNTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAAAGAA<br>CTCAAACAAATTTACAAGAAAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAA<br>AAAACACATTAAAAAGTGCTCATCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGACCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaa<br>aaagtcaggaaacaacaggtgctggagaggatgtggagaaacaggaacacttttacactgttggtgggactataaactagttaaaccattgtggaagtca<br>gtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctata<br>aagacacatgcacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaat<br>gtggcacac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	100898980	100898981	1001769	0	+	1104685149292	NA	NA	SINE	Alu	AluYa5	aaaattagaaatcagctccaaaaggaaccatcaaaaccaggcaaatacatggaaattaaataacctgctcctgaatgattgttgggtcaacaatgaaatc<br>aagatggaaatttaaaaattttttgaactgaatgataatagttgcacaacctatcaaaatttctgggatacagcaaaagcagtgctaagaagaaagttca<br>caacattaaatgcttatataaaaaagtctgaaagagcacaaatagacaatctatggtcacacctcatggaactggagaaacaagaacgatccaaaaccaa<br>acccagcagaagaaaagaaataatgacaatcagagcagaactaaatgaaattaaaaccaaaaaaatacaaaagataattgaaacaaaaagccggt<font color="green"><u>NNNNN<br></u></font><font color="red">GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGC<br>CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>ataaataaaattgatagaccagtagtga<br>gattaaccaagaaaagaagagagaagatccaaataagcttaattagaaacaaaatgttaaatattactactgatactacagaaatacaaaagattactca<br>aggctactatgaatgcccacacacataaactaaaaaacccagaggacatggataaattcctggaaatatacaaccctcctagattaaaccaggaagatat<br>agaaaccctgaacagaccaataacaagcagcgagattgaaatagtaataaaaaaatgccaacaacaaaaaagtccaggaccagacagattcacagctgaa<br>ttctatcagacattcaaagaagaactgatgccaatcctgttgacactattccacaggggagagagag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	96127780	96127781	1001770	0	+	1104685311463	NA	NA	SINE	Alu	AluYa5	tatcagggggctgcttaaagtaccactgccccagtaatttgcacaaatgcaaatttgttcagaatgattctgcatgggaaggaaataaacatttgctgtg<br>ttgagtcactaaaattctgaggttgtttacatagtgcactattgccttttcctggctaatatatggacctagtcataccttttacacatattaaaaagtc<br>aagtctcttcctttcacagctaagcataatcagcaaaagatatcctaatacttacctagttcatcagcctttaatggatgttaatccaactttccaaggt<br>catatatatttactagaaacagagaataaaaaataatttagctagtcctaatccaaagctctttgtatagcatctagtctgtatttt<font color="green"><u>TCAATTTCATCTT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCAATTTCATCTT</u></font>atagttgctgtt<br>tccatccttgggtaatcttatcccttccattattttaaactgctcttctatgtagaagacaacagaattatcacctcgaaggatttctccttaaattcct<br>caaagtatctcacacttaaccaccgaaacaacatcacactcactttccaggtgccatgatttatgcatcacttgactctgaacaatggcaaacatatttc<br>tttgtagtaggactcaataagtgtttcaatttaattgaataaaaaattaatttctattttttcaccttgattcatttgcactgcatctttctaatcactg<br>gaattaagaacctcaaagtcatcttttatttctttttcttcctcaacactaaaggccaaatggctgccaagacct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	92573054	92573055	1001771	0	-	1104685527938	NA	NA	SINE	Alu	AluY	acgtagcttttgaaaaccaactaaccctttggggcattttgtgggataaaacacacagaaagaatcaacaggaggatcgcattcaattttaagccaaact<br>ttgctatgctatggtaggaacgtgggcagagcccgtgttcaagataaatgcccaatcccctttgggactcctatcaccaactgttacgaaaatgtagccg<br>aggacattttattagagtaataatgcaacggttgaagccagactgagccggcaggctgcaattcttagcagctccgaggtaattgacctgtggccttttg<br>gttcacagactcttcacctgagccaagaaggtgcctgattgaatcatagatcttttatctctcataacatgagacggaagagttctatt<font color="green"><u>AAAAATGTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATGTATG</u></font>agccaagtgagcaggcctcagctgcactgggagcccagatcctggggccagaggccattcacctttccttttgacaaaatcttatgaaata<br>attcatttacacagtgtcagcgcgactacatatatgtgtttgggaaaaaaaaaatacaaggaggggaaaaaaaacagtcaaaaatgtactttttccctgg<br>gttgtaggaaaatgattcttattttcctgcttagcctttattgtgtttccaaattttctacagagaatatgtatttctttatgagaaaacaaacattttt<br>caaaaacaaatgttcacatgagtctttgcccaggcactgactacgtttaagtaggtaaaagatgcggaacggagagtttatatatggacacctaccaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLCO3A1:NM:013272:2/10	
0	chr15	97770235	97770236	1001772	0	+	1104685311038	NA	NA	SINE	Alu	AluYa5	agaataataaaagaaaagaaaaaaatgaagaaaatcaattaactcagaaattggtttcttaaaatttcaagaaaattgatcatcctttagctaaactaac<br>agaaaaaagaaagaagacataacttatcaaaactaggaatgaaaaaatggatatcatcattaactctaacaaatgaatatgattataagggaatatgatg<br>aacatttcttcatattttatattttgatatgtcagaaaattaggagagataaaatggcacgtgccttaagagacgcaaattaccaaaattgacttatgaa<br>gaaatagaacatttgaatatactgataacaagcatagaaagtatgtaataacaaatatccctctctcccaaaaatttcaggctc<font color="green"><u>ACCAAAGAAATCTTCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>ACCAAAGAAATCTTCT</u></font>aatacaataaaatatttaaacaaaaccaatcttttacaagctctttcagatgatagaggtagagaaaacctgt<br>cccaactcattctaaggactcacgattactctgaaactgaggcctgatgaagacaccacaataaaataaaactgcagaccaggaacccttataaacagaa<br>acacaggtatcttttaaaaaaattagtgaatgaaatcgagcaacatattaaaaaagcatcatatatcatgacaagtgaggtttactctaggaatcaaagc<br>ttagtttagcatccaaaaaaattaatgtaatgtaccatattgatagaataacaaacaaaaatagtatccttttaatagattaaggaagcatattacaaag<br>tttaacacaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	100343320	100343321	1001773	0	+	1104685149446	ACTGCCACCACAGACTCAGTT	TCACCAGAAGATAGACATCCTGA	SINE	Alu	AluYa5	gctggtcttgaactcctggcctcaagcaatcctcctgccttggcctcccaaagtgccaggattacaggcatgagccaccatgctgggtctatatatacat<br>tttcttttccatgttatatattctgtatgcatccttctggaatttgtttttctcacaatattatattgctaaagttcttattgttgtttattgctggcgt<br>tcattctttttgactgcttgtgaaatcaccagaagatagacatcctgagctctcttaagaactgctgctgggagtatacactggtatgaccactttggaa<br>aacagtttggctccatctcataaggttcaatattcacactcctcccagcccagtaattctactctacatggaagagaaattcttgcctatat<font color="green"><u>CCTGTTTT<br></u></font><font color="red">GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>CCTGTTTT</u></font>gatgtggacaaggaatgttcctaacagctctgttcaaaatagcaaaaacctattgcccatcaactggagagtaggtgactaaattgtgc<br>tttttattccctttgatttcctgtagtcttacgatgcaagtggctttcccatggctatcttggggagggggagactcttggcaactgagtctgtggtggc<br>agtcctgcttagccctagggcaatcggtgctgaccaaaacaagagtaaacagaacaaggtgccccattgagccaatgccttgagtccctggaggtacagt<br>cttgtatctgtaggaaatagccatcatacaaatcagtcttttcaaatgctctgtcactgggctgagtccaaaggacattctcctttaaaacattataaag<br>ttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	678	368	NA	intron:C15orf51:NR:003260:2/5
0	chr16	53183669	53183670	1001774	0	+	1104685694776	NA	NA	SINE	Alu	AluY	gtctccgactattgtagaactttctacaactatattgtagaattatttgtttttcccatcaattctgtgtatttttacttcataaattttgtgggtctgt<br>taggtgcatacatgtttataattggtatatcatattggtagattgagtctctttcatcagtgtgtaatatccttctttgtctcttgtaacctttctctct<br>ctgtctctcgtacccagccatttttttttttttcaggctaaagtgcagtggcacaatcatagttcactgtaacctccaactcctgggctcaggagatcct<br>ccagcctcagcctcccagttagctaggactataggtgtgcaccatcacactggctaatttaaaaatatatatatatatattttg<font color="green"><u>AGAAATGGGGTCTTGC<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAATGGGGTCTTGC</u></font>tgtgtgtcccaggcaggtcttgaactcctggcctcaagcagtactgttacctcagcctcccaaagtgctgggattgtggcag<br>gtatgagtcaccgtgcaaggccctcttgtaacctttttttacttacagtattttgtttgatactaatatcccagctctcttttggttactatttctgtgg<br>aatatattttttcatttcttgttttttatcctcctgtgactttgtatttagagggaacctcttgtaaacagtatataagatggattatgtttttattttc<br>atttttatccattctgctaatcttttccttttaagtagaaaatttcattcatttacatttaaagtaattattgataaagaaaacatacttctgttatttt<br>gc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CHD9:NM:025134:1/39	
0	chr16	60041168	60041169	1001775	0	-	1104685220047	NA	NA	SINE	Alu	AluYa5	aatatgacttgaagaaaatacacacacacacacacacataccagttcaaggttatttgataaatttgaatgtatttgtctaattatatatttagggaaaa<br>atgaatctatgtgttttacttgaaaccatacaaaaatcatttgtgaattcagaaaaaaagtaaaaactctgtgaatacatattttttagttgggaggaaa<br>ggaggctgatgaacgcaaatcactttggctcctagagtcagacaacctgtgttccaaacatgtcttcatcatttattcaccatgtgacattgctcagcct<br>cccttgaagagttgctctgaaaattgaagttaatatgtaacaacactaaactcagccttgtccatactgtaggaactgtgtgatt<font color="green"><u>GAAAACTTTTCTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGAAAAAA<br>AAG</font><font color="green"><u>GAAAACTTTTCTTCC</u></font>agaaatttaattttattgtagatttatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagag<br>agggagagagagaacatgccaccatttgttgctcattttctcaaagattttttcaaagtatataggtcataattatattatctttcctagatgaaatcta<br>attgaggcattaagtgctcatctgtctctgaaagaaaatgttgtttcctggtgatttcacttgatattttagctgtgtaagatgggaagcaggataagaa<br>aaagaaggatgaaggtaagttagccgggtgtggtgacacatacctgttagtcccacctacttgggaggctgaggtgagaggatcacttgagcccagaaat<br>tcg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	23865300	23865301	1001776	0	-	1104685110006	NA	NA	SINE	Alu	AluYa5	actttaagccactaagccttgaggttatgtgctatccagcaatagataattgatttgttgggtgtccagtcaaatatctggaagtagaaccaacaaagga<br>ttcttctatataacaagtcagcttagaagagaactaacccggcctcaaagagatctgcttgggatgtccacaggtgatatggtttggctgtgtccccacc<br>caaatctcatcttgaattgtagctctcataatccccatgtgtcatgagaaggacctggcggaaggtaatggaatcatgggggtgggttttctaatgctgt<br>tctcgtgatagtgaataagtctcacgagatctgatggttttataaagggcagttcccctgtgcacgctctcttgcctgctgccatgt<font color="green"><u>AAGAAGTGCCTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTGCCTTG</u></font>ccttcctttgccttctgccatgattgtgaggcctccccagccatgctgaattgtgagtcaattaaacct<br>ctttcctttataaattacccagtctcagttatgcctttattagcagcgtgagaatggattaatacaacaggcaaccagagaggcaagaattctgactgat<br>tgaaaaactagaaagtctgacaagagccagattgttctaataactaaaaacaagaaaagtgcttctttatttcacttttaggaacacaaatagaactcac<br>tctttccctgctatgtttgataagataaagacgtccagagttttgcatcttagttttaccagtcaagtgagagataaaactagatacatcaccgcaaaga<br>aagacaaaggaaattatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PRKCB:NM:212535:2/17	
0	chr16	89281699	89281700	1001777	0	+	1104685078108	NA	NA	SINE	Alu	AluY	tataccacatataaaaattaattcaaaatgaatcaaaaacctaaatgtaagcgctaatgtataaaactcttagaagaaaacatagagaaaaaacttcatg<br>gcactggaattggaaatgatttcttggttatgaaatcacccacacaggcaactgaagaaaactagatgaattggactacatcaatattacaaattttgtg<br>catccaaggacaatcatgagagtgaaaaggaaacccacagaatgggaggaaatatttgcaaatcatgtgtttggttaaggattaatattcagtttattaa<br>gaactcctataactcaagaataacaacaaaaccaatttaattcagaaaaggacttataataaagaagataacagatggccaataag<font color="green"><u>CATCTTTTCATGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CATCTTTTCATGTT</u></font>tc<br>aacataactaaacattagggaaatgaaaacaaaagccacagtgagatcacattaccccggtggtgatggctcttagccattaaataggaggtaactgttg<br>gctggatgtggtaaagttggaaccttgtgcacctgctcatgggaatacaaaatggtgcagcagctctggaaaacaggacagtggtttctcaaaacatcag<br>acagaattatcatgtgacccagccattccacttttgcatatatatccaaaagtgctgagaacaagggtccaggatatttttgcacacgatgctcaaagca<br>acattattcacaatagcctgctggtgccaaagtcaaattttaatacattcagttacttaaaacatatccgtgcggtggctcacg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	69395848	69395849	1001778	0	-	1104685222157	NA	NA	SINE	Alu	AluYa5	tgtgtgtgttgtggttggtagttagaggaggcttcactgagaaccatggccttgaaagatggatgagatgtcacttagcagggaagggactcccaagcag<br>aggggctacagagaggcaggaaagtacagagcttatggaaggaagaaagagcagaacagtgtggctgtgctgtttgcacaggtgtgggcatcgtggggcg<br>gttggttagaaactgacgggccagactggatggtgtggactcccccatacaggcatatagatgccactgttcaggcagagagaagccattagggaataga<br>agaggcatgtggtaattttagggtgattgtcctaaaatcatctttggctttggaaggggaagagcctagcggcagagactctagtt<font color="green"><u>AAGAGGCTAGTGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAGGCTAGTGGA</u></font>tactgatgaaaggcgccgtgagcttgaacaagggggaatggaaacggaaaaatcagtccagatataggaagaa<br>ggcatgtccaaggaagagagggaggggtttgcaggttctaaatcagaaaaatactgagacctttaaaagagtcaaaaccaaacaagcaaaacaggaaaat<br>gaacagattctttagaggggtggtgatgtgcttgatgtactcagtgctgaatttgaagggtgtcctgcagcctgaggggtgttacgtggagatgcctggc<br>cagccaggagaaaggacagtggctttgggaggtgcatgcaggcgaacctcgattgtggtcacaacgggacaggaaggagtacagggccaagagtgagcca<br>agaccagaatctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TERF2:NM:005652:7/10	
0	chr16	82164198	82164674	1001779	0	+	1104685107806	NA	NA	SINE	Alu	AluY	cgccaccacagcagatttcaacctcacttctaatcaacaatgcttctgatttcagtgccaaagattctcaggtgccagggtcacattagataaaagtaat<br>cttgtaaatttgttaatttctaaaaatctaggtgtcaatttccctgaatcaagggaaaaaagccatactccactgattaacactgttctggatcccagcc<br>actgatatagtttggatatttgtcccctccaaatctcatgttgacgtgtaatttccagtgtttgagattgggcctggtggggggtgtttgggtcatggag<br>gtggattctctcacgaatagcttggtgctgtccttgtgataatgagaagttatcactctgtgtatatatgtgtatatatacacatgcgtgtgtat<font color="green"><u>NNNNN<br></u></font><font color="red">CACACATGTATATATATGTATATATGTGTATATATACACACGTGTGGATATACACGTGTGTATATATATGTGTGCGTATATACACATACACACACACATA<br>TATGAAATTGTAAATTACCTAGAGCACTCAAAACAATTTTGAAAAGAAAGGACAAAGTTGGATAAATACACTACTGTAGTTCAAGACTTAATATAAAGCT<br>GCAGTCATCAAGATAGGTAAATATTAGTGTAAGAATGGACACATGTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCA<br>GGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTA<br>CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGTCTGGGCGACAGAACAAG<br>ACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>cacatggataaatggagcagaatagagtgtccagaaataaatccacagcagcgta<br>atcagtaccaaggataatctgtagggaaaagtgtggtgttttaaccagtagcaccagagcaactgaacatttgtatgaaaacaaaacaaaacaaaagcaa<br>accaggaatctcagccctttacttacaccataaacataaataaactctaaataaagtatagacataaatgtaaaagttaaacctatacactttttagaag<br>aaaactgtcataaccttgaggtgggcaaagataagaaacaaaatatacatcataaaaaatcctgacaaatcaggcttcatcaaattaaaactttctgcct<br>ttggagagatagcactgcaattacaaaaaggcaagctatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	13436847	13436848	1001780	0	-	1104685551306	TTTTCAATGAGTTCCCAGACC	TGCAATCAGATTTCTCCTGCT	SINE	Alu	AluYa5	tctgagacatctgtgaaaatgctctcagagaagctcttcagggatttacagtccttcctatgttaagttctttctcttctgatttgttacattaaataag<br>gcaggaattttaaacaagcaagaaaagaactttatactctagactatgatctttgacgacaataaatgtcactgaagattttgtttggttctgtttcttt<br>ttgggttattgctctcctatttgatcaaattatagaccctatctaaagctttaggaagttgtttccatgaaagtaacatctttctatcgtgatgcaatca<br>gatttctcctgctttttgttattttgatttaaattctttgcaatgaatggaaccaatctcaaatgacagatacagagttgcctt<font color="green"><u>AAAAATTAGTAACTTC<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT<br>TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTAGTAACTTC</u></font>gt<br>ttataagtattctttgtatattttcattattatttttcttacctcccctttaaaggtctgggaactcattgaaaacagagtctctgttccagacctttct<br>ccttccaaacaagacttaggacgatgacatttcctttttctgtttcttcaaggttgctgtgaggataaagtgagataacctacaaagtcaccttaagcag<br>tgtgtggattgtagcagatatgtattaaatattcgtttctttcctatttcccttattaagcagtttaatttctattcagcagtgcatgccatttacaagg<br>ttggtatgcaaatgtgaaagcctaacttgactatatatattaaccttatacatgtagatattttacactttacacagttccc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	483	186	NA	intron:HS3ST3A1:NM:006042:1/2
0	chr17	45402411	45402412	1001781	0	-	1104685415529	NA	NA	SINE	Alu	AluYa5	ttctttctgaaaggatcactctggttactgtgaggagggaaatcaggtaggtctgggttcctgaatgccaagtgaagaaagtacttcaagagtgagcaat<br>caggctgtgcatggtggcttatgcaggtaatcccaacactttgatgcgggggtgggggtctaagcaggagggctgcttaaggccaggagttcaagaccag<br>cctgggcaacagtgaaactcccacctctacagaattttttttttaatcagctggacatggcgaccttagtcccagctactccaaagactgagccaggagg<br>atcttttgagcccaggagtttgaagctgcagtgggctatgattgcaccactgcactccagcctggacgacagagaccttgtct<font color="green"><u>AAAAAAAAAAAAGGGGG<br></u></font><font color="red">CGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGC<br>CTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCT<br>GGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAGGGGG</u></font>gggtggggtgggcggttaagatcagtactgaat<br>ggttcgctaggtttcacaacacggaggacactgacaaacttgaaaggagccatctgggtggggtggtaaggagacaatgtcctcagagtgagtacaagag<br>agaacggggtaaagaaattgaacccagccagtagggtaggctctttcaaggaattacgttgttaagagaaataaggcagtagctgagaggaaaatggggc<br>tgtgaggctttaagatgagaaaaacaaaggcgtcttcactgaagcatgactctgtatgacatcctttcacaaaataccttcctctttcctctcatgccac<br>atttccctcacaagccgcccgactcgctcgcttttctctcgccagaggga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C17orf57:NM:152347:2/25	
0	chr17	20461552	20461553	1001782	0	-	1104685503408	NA	NA	SINE	Alu	AluYb9	cctggtcagttttttaattgatcttttgtataatttttttgtttaagaaagggatcctttggcagaaagaaaatctgaaactctaaatactgtccatttt<br>atccatatattgttggtcataccctcaaaatatatcctgattccagccatttgtcatgaccactttaatctgagctcccttcatttttcaccgggattat<br>tgtaccagcctccccagtggcctccccactgccacctggcccctccccagggctcagcaagatttttctgcaaaggacctggtagtaagcatcttgggct<br>tcgtggaccctgtggtctttgttgcacctactcagcagttactcagcttcgccactgcagccccaaagcagccccagac<font color="green"><u>AAGAAGCGAACACAGGGGAGG<br></u></font><font color="red">CTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCGAACACAGGGGAGG</u></font>actgtggctccaataaacctttattcacaataggaggggggcttc<br>atctggattgtgggccatagtttgaccacccctgcctgacttcatggcaacactaaccttcgtatttacgcctcttttttttttaatatttatttttgtt<br>gtatgtatttatgatgtacaacatgatgtttctttttttttttttttttttttttagtatttattgatcattcttgggtgtttctcggaaagtgggattt<br>ggcagggtcataggacaatagtggagggaaggtcagcaaataaacacgtgaacaagggtctctggttttcctaggcagaggaccctgcggccttccgcag<br>tttgtgtccctgggtacttgagattagggagtag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	10888129	10888130	1001783	0	-	1104685550497	NA	NA	SINE	Alu	AluYa5	ggagttgggagagcaaggggaggcacagggctgcctcctgactgtcattcgtcacaatggcccatggcactctgagttcactgaagatgtcatccacatt<br>ctgtccaagggaaagggctgtgaaatgtaaggggattgactctgcactgcttcaaagaatgagtgaggaccagtgagtagaagttacagtgaaggctatt<br>ttcaatttactgtaggagacagaatagcagacgggctgagtgcatcagcttcggagtcaacagctgcacgatctaaggcatgtaacttgtctttctgaac<br>atcagttttcacatctatagagtgagaataaagtagagtgcttagcatttgcctaggccatattatctttggtttcattagcatt<font color="green"><u>AGAAAGAGCATTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGAGCATTCTG</u></font>cagcagttataggtcagcctctgagactagaaggatttgggtaaatgaccatctgacaaggaaaa<br>aatatctcagaatggagacaggccctgtccaacccaaggacctgaagtctgggcaatgcctctctaagcagttcaccaactgcaggtcccctctgactta<br>tgtttccaaaacagagttcttgctttgttttgctttgtttttctttgttttgtttcccagaagaggataaaagagcagaacaatgtactgaaagtaacta<br>gaagtttttttacatgtatcctcagggcagcagtttctgaggtctctgaataggaaaagagcaggctgcatgtcttcagcaacatgcctgctttgtgctg<br>aatgaggatagggcttctgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	54947583	54947584	1001784	0	+	1104685418180	NA	NA	SINE	Alu	AluYh9	ctagagattgaacccaggccatcctccccactgcctttcatcatcaacacaaccaccaccaacagtattttaaaagtgttaaatattggcagacgtgtca<br>ttgttctgagcactaggactagggcttatgcggctgtctgaggaattccctgtacaaggaaacatcatataccaaaaagttactcatggaaggagtttgg<br>agatgatgagctaaaagtattacacatggactattgtaaaagaaaaaaaagcaggcacaataaaattttagaatgtacttaagaagcaattcgtgacttg<br>ggaaaccccaaacccaatgaggatttagtgtttcaatgacacaacatcagaggcaagtattcatagagtgcatacagaagcaaaat<font color="green"><u>AAGAAATGATTTGA<br></u></font><font color="red">ACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGGTGAAACCCCGCCTCTACT<br>AAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGC<br>TTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGATTTGA</u></font>ttgg<br>ttgccttttttggcttactttcttggaaagtccccagtctcatgatcatgttagttggctgcttatgattggctgaggttaagttttgtatctaacataa<br>gcatttaccaaaaatgacccaagttaagtttcatttatgtttacagtttaagtaggttagggctatttttaaggcctagttggtttgtttgctcaggaat<br>gtttcaagcctagtttccattttaattttgctttgacagttccccacttttagtcaccccgtccgcaagctgagagtgtgaccaaatggcatagcattac<br>tctcagttaccactattgacatagtctaggaagaagagtcagatgtttatcaatagctgccctagggctcagagtcaccctc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	51957128	51957129	1001785	0	+	1104685417467	NA	NA	SINE	Alu	AluYa5	caatcaataaatgtgattcatcacataaacagaactaaaaatgaaaaccacatgattatctcaatagatgcagaaaggactctcaataaaattcaacatc<br>tgtccatgttaaaaattatcagcaataggcattgaaggaaaatacttcaaaataataaaagtcatctgtgagaaacccacagacaacatcatactgaatg<br>ggcaaaagcagcaagccactccccttgaaaactggaacaagataaggatgccgtcttgtaccattcctattcaacatagtattggaagtcctggccagag<br>caatcaggcaagagaaagaagtaaaaagcatccaaacaggaagaaaggaagtcaaactatacctgtttgtagccaatatgattctatact<font color="green"><u>AGAAAACCCC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAAAACCCC</u></font>atagtatctttccaaaagctctttgatctgaaaaataacttcagtgaagtttcaggaaatgaaatcaatgtacaaaaa<br>tcaatggctttcctatgcaccaacagcatccaagctgagagctaaatcaagaatgcaatcccatttacaattgccaaaataaaatacaataagctaccta<br>ggaatacagctaaccaaggaggtgaaagatctgttaaatgagaattaaaaaaataagacatcagagatgacacaaacaaatagaaaagcatttcatgcta<br>atggataggaaggatcaatattgtcacaatggccatactgccgaaaggaattaatggattcaatgcttttcctatcaaactacaaataacatttttcaca<br>gaattagaaaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	24538030	24538031	1001786	0	-	1104685181528	NA	NA	SINE	Alu	AluYa5	ctgatgtctagaatcgtgtttcctaggcttcctttcttttttatctgtgccaatcctatgggaattttcattactcctcattcttttaagagtcaaagaa<br>cgtaaacaactataagcaaatttagtatttatatccctgttatgcaataaagacaaaacaaaagccagggaagtgaagtaatttgccaaatatcatatag<br>cctggcaaagtcaagactagaaatgtctgagaatcaggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggtaggtggatcacctgag<br>gtcgggagttcaagaccagcctgactgacatggagaaaccccatctctact<font color="green"><u>GCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTGTATTTTT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAAAAAAAA</font><font color="green"><u>GCTGGGATTACAGGCATGCACCACCACACC<br>TGGCTAATTTTGTATTTTT</u></font>tactcaggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgtagtgagtggagatcgtgccactgcacta<br>cagcctggatgacaaagagtgaccccatctaaaaaaagaaaacaaaaacaacaaaaaagaaagaaagaaataagtagaatgtaatttttcatgtcataaa<br>cataaaatgtacctaggcacttttctacctttcttttgcacaggtgtgagtatatgcatacatacctgcctgttcacccaacataacccacacatacaca<br>cacaatctactcacaccacagctatctttgcaaaataggtaactacaactccagaagaagattctctgat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CHST9:NM:031422:4/6	
0	chr18	27531877	27531878	1001787	0	+	1104685180818	NA	NA	SINE	Alu	AluYa5	atgttatcaatcactggcatgttgctaaatatggtttatatttctcatctcttattttgcttgcctttctactgtcattacatatatatgtatatgtatg<br>tatgcgtgtgtatatataggtatatatatatgtgtatgtatatatatatagtgatggaaactaacaatgactttatattgacacagatctgaactatgtc<br>attttgtcctattattcttagctaaaccaacaagttcaagagtcaacccctggccatggaaatttataccacattctggatagacaggtacaaaggaggg<br>ataaaaaggtaaaagagtttggtgtactgacagaagagtggctgccacttgggccatgactcctcataaagtgaagaagtatttac<font color="green"><u>TCAACTTAACTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>TCAACTTAACTCTT</u></font>aattattgaatggtaaatgttgctgtatgtagccatgtttacattcaacaaagtgaggttaataatgttatcaagtgtg<br>tatgtttcaatctttttttgaaaacaaagttatttaagtaaatttctgaaattattaattaatcttgcactttaactttgtcatctcaatttttttcagt<br>cctcatgggctaaattcagtcaatatacctgtttttgttgggttgacagaatactttaaaaaaagtattccaagatatttagttccaatgcctcctacca<br>cattattgcttcaaatagcctctctatctatgaatgaaaactgcctaacccatagtggcatttgggtttaaagctcaaatgaaaacaaacatatacgtaa<br>aacacga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	27800862	27800863	1001788	0	-	1104685180719	NA	NA	SINE	Alu	AluYb8	cattttctccttggactctggtctttgatgcatttctttttctctccacagaatttgtcacctatactacaaagaccattccagctcatccatatgtgtg<br>ctagataccttttctagttttctcagggttgccgtaaaaaaaggaccacagactaggtggcttaaaaaacatacatttattttctcacagtctggaagct<br>agaactctgagataaggtgttgaaagggttgtttttttccccaaggctgctccttttggcttctgcctaggcctttacatgttcttccctttgcactaat<br>atgtgttcaaatttgtgttcaaatttcctggtcatattggattatgtttcattttaatgacctcattttaacttatttacctcttt<font color="green"><u>GGAAATAGGGTCTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>GGAAATAGGGTCTT</u></font>aaatatagttacattctgaggcactggagcttaggacttcaatatataaattttgggggaaacacgattcagcttatgaa<br>acttggtacttctcctaatttagcacaaatttctagatgtataatatttatttatttgtatcctccagaagactatgtaatttgagaacaagttttgatc<br>atctttgtcttatcatatcactggagcttgatccaatactcagtacatactgatgaataaatgggtatgagttttttcaaaattaattgacatttgctca<br>gatctatactgaaatttattgttcctctatattacaaaaagtctaccgggagaggtggaggttgcagtgagctgagatcatgccactgcactccagcctg<br>ggcgac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	29003625	29003626	1001789	0	+	1104685180479	NA	NA	SINE	Alu	AluY	tacaacttttaaaaaaatgaaaaaaaaaagagagagggaaacaaaaaaggaccatactttcgttagaaattcacagagctaaggttttctgagactgata<br>agattaccgagttaaaagtaagagagaggctgaatgtgtgtttgatagggaggcagcaagtttgtgtggtgagtgatggtgaggtgttggcacaaaagtc<br>accatgcatgcatgtgatcagaataaatattgattgactaggaagtcttgttaaatacacattatgtatttaacaaggaggcactgactgggtgatgact<br>ttgatatcagtgtggcatgagccaccatatgtagagaacatgaaactagataggaattattaaaaaaaaaaaaaaaagagt<font color="green"><u>TAGTAAATACTTGTTTTTT<br></u></font><font color="red">CAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>TAGTAAATACTTGTTTTTT</u></font>tatgtgtctagca<br>ctaggctaattgtttctcaaaatttttcttatttaatgcatcttatgatctttcttttatagttgaagaaaattgaaaagaaaaactataaggaaatcac<br>cgtgaaccaattccagtgctcattcatttattcattaaatgttttttgagcattttcattatttgcatatgagctaagggctaggtatagaaacgtgaat<br>tagggtccttaccatcaaggacctcagtcagattcaggaagaagtaaagggttgaaatacagtatgagatacagttatacaagggggtatgaatgagtgc<br>taagggagaagagaagaggggcctagcattaatgagctgggaaaggcttcccataagaaatgaacttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	6521718	6521719	1001790	0	-	1104685494917	NA	NA	SINE	Alu	AluYa5	cttggagcactaaaggaaccaatgatagagttggaagatgcttgaaaagaggcaagctgtacattagagttgcagttccacaggtggacagcaggggaag<br>caagagatcaaaaaaggtttgagaggtcctagaacctctagctgggctgatgggtgaaagccttccctgcatgaagccagtatgtaaagactgggagatg<br>tggttgatttttcaaatgcccaaatttcaacagattataaggcataaaaatgaaaaaagaaaacacaacctaatcaacaaaacaaaatgaatctctcaaa<br>actgatccaaaagaactgcaaatctatgaactccctgacaaagaatttaaaataacagtcataaagatgaccaatgagcttt<font color="green"><u>AGAAAAAGAGAACACATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAAGAGAACACATA</u></font>acccaattaaaaagaaatcaggaaaactatgcatgagcaaaaggaga<br>aaatcaacaaagagatggaaactataaaaaaaaaccaatcgagtttttattcttcctttaaaagacagttatttgaaaaaaaaaaaccccaaaaatatct<br>gactaaaaaattcactaaaggggttcaacagtagacttgatcagatagaagaaaaaaatcagtgaatttgaaggcaggtcatttgaaatcatccagtcaa<br>aggaacaaaaagaaaaaagaatgaagaaaagtgacataagggacacaatcaagtgggcccaacgtatacattatagaaatccaagcagagagagagagag<br>agagagagagagagagaaaggagcagagaaattat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	2304407	2304408	1001791	0	-	1104685493662	NA	NA	SINE	Alu	AluY	agaaattgaaataagatgtagtgcataatttacttatcaagttattattgtacatgcttgctggaaactcccatggcaaaatgtgtaaacaaataaaagc<br>aactaatttttttcagtttgtcagtctagctgctccagagggattgctctccaactagtcagcccatcaggaaatagacatggagcagaggtagaaagac<br>ttacacactttctatttatttctacatcagaggaatgtgggctttcctgttatgattcatatttgatatctgcaaactgtggaaatggctggcctcttaa<br>taccttgttgaagaacggcagcaacaacaaatgcataaagtcattgtcatttgtgtcacaaaactttcctttgattctttgggtt<font color="green"><u>AAAAAGCCCAGTAGA<br></u></font><font color="red">TTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCG<br>GGCGTGGTGGCGGGCGCCTGTAGTTCCAGCTACACGGGAGGCTGAAGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGTTTGCAGTGAGTCGAGATCGCG<br>CCACTGCACTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCCCAGTAGA</u></font>gcaaaagtttcagaaccttttacacct<br>cttggaatttacataatttaaccatctacaaattaaattattaaacagtattaaaggcagggttcccagagtaaatgatgcatctttgccattcatttcg<br>tttgtcccattcagttaaatttaaccaataggaaaacctagactaaaacaataatagaaaattactgcaaattagtcagctggacttgagaggcacactg<br>taaaaacatgtctaatctattttcctttgtgagtctaaactacttttccaattacttggtgagccctctccaactttacaaggactgttaagagagaatc<br>taattagagatctgttcactgaagtacctagagggtcattttgccaggagcaaaaaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	10911136	10911137	1001792	0	+	1104685755944	NA	NA	SINE	Alu	AluY	catcatctcaggttttcacttaaggctaataagatctaacatttttaataattgggaagacatcaatagaaatataaacttttctgttctaaaactgtag<br>aattggttatgacataggaggtgatgaagctaggggagagtcaaccatttcctgggattctctaattctgtaacttactttgtgtactgttttacagttc<br>aagatgcgttttcacatcaattgccccattctatctttatttccactctgtgtgcaggcaaggctttatgaagtaatgctctacaaagaaactgaggctc<br>ggaggggcaaaatgacgacttgatcaaggtcatacagttaccaaaagggtggtgacaggactattgatttataatcaataaattactta<font color="green"><u>AAGAAATTACT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCGGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAATTACT</u></font>taaaagacaagagtaactaaaatggagacatgccaacccttgcttacctttcaaagccgatctgccggaatgtcttttc<br>ccatgttgagcctgtaatggaagggagagacataatcagggcacatcaaggactcagatagttttgttcggcttttccacacacgctagatatttggttt<br>tatgtttaggtaggatgactggtttttcttcaaatgcattactccccacctccagtcccagatggcctttgtagagtacagaaaatttaataaaaagtcc<br>gcatatacagaagtcgagtccacatagggatttaagtgcatataacctgcaatgtggccagccgcaatggctaacgtctgtaatcccagcactccgggag<br>gccaaggcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM38B:NM:022068:4/52	
0	chr18	49931372	49931745	1001793	0	-	1104685128457	NA	NA	SINE	Alu	AluYa5	ggatggcattgaatctgtaaattaccttcggcagtatggccattttcacgatattgattcttcctacccataagcatggaatgttcttccatttgtttgt<br>atcctcttttatttccttgaacagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaa<br>gcaattgtgaatgggagttcactcacgattcggctctctgtttgtctgttgttggtgtatacaaacaaccccatcaaaaagtgggcgaaggacatgaaca<br>gacacttctcaaaagaagacatttacacagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccaca<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGTAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAACCCCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGT<br>GGAGAAATAGGAACACTTTGACACTGTTGGTGGGACTGTAAACTAGTTTAACCATTGTGGAAGACAGNNNNNNNNNNNNNNNNNNNNCATA</font><font color="green"><u>NNNNN</u></font>gatg<br>agctcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactgtcacaagaacaaaaaaccaaacaccgcatattctcactcat<br>aggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgttgtcgggtggggggaggggggagggatagcattgg<br>gagatatacctaatgctagatgacgagttagtgggtgcagcgcaccagcatcgcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccc<br>taaaacttaaagtataatttaaaaaaaaaaaagaaaacaaaaaagaaaactccattcttaacttcgggctgcaaagtagaaatctgcccat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DCC:NM:005215:1/29	
0	chr18	66399175	66399176	1001794	0	+	1104685563731	NA	NA	SINE	Alu	AluY	gcatattaggttggtcccatctgaggttccattgcctcaaggtcattttagtggccagagggataaacaattttatatatgtatgtatacatatataata<br>taatataaacaattttgtatatgtatgtatacatatatgatataaacaattttgtctatgtgtgtatataatataatatatgttatatgatctcctatac<br>aataatgctcattcagttatatatcagttgtcaaattcatttggagcaaaactcttcagacagacaatagtcttgagattttgaaatctctgaacaccat<br>ttctacttcagtaaaagtacagaaaattgtacgaattagtgcaagcaaagctctttttggaggaaataaatctttatttattttta<font color="green"><u>AAAACTGAACACAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACTGAACACAT</u></font>atcaaaggagaatggcttacagttattgagatttaagttatagcatctgctaaatactgactatttttctcacataaaagt<br>cctttctcagtcctttggctttagtactctaagagcactctgaggaactttattcatgttgatatattttgagttactcaaacattaaagttcagaaaat<br>ggagaagttaatttcagtaaaatacactgcttcaggggggaatcttcaatctctttcctgtgggccagtttttatggaagcacagggcttttcttctatc<br>gccctgtgtattttaaattatttctagtatttctatggtggataccataaactgtttggttaataataaccatagcttgaagtcttattccttgaaatgt<br>gtatc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCDC102B:NM:001093729:2/10	
0	chr18	66572501	66572502	1001795	0	-	1104685563794	NA	NA	SINE	Alu	AluYb8	gagttactgcatcacgcttgctttgtttccttatagggtgatgaaagtgctttggaattaaatagacagggcggtcccataacattgtgaatctactaaa<br>taccactaaatgttcactttaaaatggttaattttatgttatgaaatttcactttaatgaaaaagagaagaaaaaagaatagtgaatggctcagatctat<br>taatctgagtttacactaatcttatgattttaactcaaacttgcattttagttttaattttaaataatctttgtaacaatagtgttttatgtccttttaa<br>ataggaaggtaaataattatttatctcattattttgtaataatatagtggattattagtagtatgctagttacatcaaacattaaaaaatat<font color="green"><u>ATAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>TAAATAAAAATAAAAATAAAAAAAAA</font><font color="green"><u>ATAATTTC</u></font>cagctgacattcgtaaatgtcataatttttgctacggtattttattaaatataagtgatttaaatt<br>gtcaaattttgcatctttgttttaattggatatgggttaacatatcacctgtttgatacacatgaaggagattttaaagaataatataaacttccaataa<br>tcttatatttgccttactgatagaataaaagtataagagttgaaaacaaatcaggaaacataattaaattcaaatagtaataacagaagcatcaatactt<br>aaacttatgcatttaacacacagttatgaggatgtgccaaacactatatttagtagggactgagatttaaaattcatgattttagcaaaacatagcagtg<br>aatggtataagagaatatgaaagtaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCDC102B:NM:001093729:8/10	
0	chr18	67160066	67160067	1001796	0	-	1104685563996	NA	NA	SINE	Alu	AluYa5	gtcttttaaaatattttataatcttttaaagtgctactcaaagatgaatatgaatattgtgcttctatgttgatatagagagattataaacttcacctgg<br>gaggttctggaaagatcttaatattgttggtgactgtcatacaatgacatcatcatgatgtttatatagatgtgatagctaatattttgagggcatttgc<br>tgtgacaataagtttatattttcatttaagattcttaaatataaggcaggtagtattactattctcatttgaaaaggaaaaagcacaggtagtaaatgac<br>agagctgggtttgaagctaaatactcaagaaaagaaaacgttccttttgagtatttcttacaccatccttaaaaatccaaagctat<font color="green"><u>AAAAAAGCCCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAGCCCACCA</u></font>tggtggactgggtaaagaaaatttggtacatatacaccatggaatattatgcagccatagaaaaagaatgaaaccatgtcctttgc<br>agcaacatgaatgcagttggaggtcattagtctaagtgaattaattcatgaacagaaaacaaaattctgcatgttctcagttggagctaaagatcgatta<br>cacatggacacaaaacagggaacaatggacatcagggcctatgttgaggatggagggtgaggattgaaaaactacctatcgggtactatgcttattatct<br>gaatgacaaagtaatctgtacatcaaactcccgtgacaggcaatttactcatataacaaacctgcacatctatgccctgaacctaaagtgaaggttagaa<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DOK6:NM:152721:1/8	
0	chr18	57150121	57150122	1001797	0	-	1104685561068	NA	NA	SINE	Alu	AluYa5	gagtagaaaataatgatcttaaataatttttttcatcacattttaataaaaaataaagtgtaccaaaattcttagaagaccttatataacctacatgaaa<br>gttctaattatttgacaaagctgaaacttgttttaagacacagataatgtctaatttcccaaatcagtggtttgtgctcctttctccaccatgatgtgta<br>aatggtgtgttcacacaggtgacatgataggctgtaggtgacatgcagttcccagctggtagaccacgtttaactcagtttctcttcctagaaagcatgc<br>ccaaacacaaatgagcgagaatgatgttgcagtaggaatgaccttgaatcttatgtctttaatagttacaaaaaaaaatacttctt<font color="green"><u>AAAAACGGTAATTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTTTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAACGGTAATTT</u></font>acctttatagtcaaaatatcttggggtatattcttgagatttgcagatccactgtaagctggttaattctcagcttctcatatat<br>gatgatggaagtggtgaaagcaaggaatggggaaagtaatgcgagcaggagacaatgagacaaagggaacattagctccagcagaaatgccagggttgtg<br>ctattttacataaaatgtagagactttataaccatataggtccatttaaccaactgccattttttcctacagttgtcatatttattgcaactacatgcat<br>tataaaccttgtaagacaatgtatgttattatttttgctttaagaaattcagagcaagtctttgctattgtgaatagtgctgcaataaacctatgtgtgc<br>c	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCBE1:NM:133459:2/11	
0	chr18	46523846	46523847	1001798	0	+	1104685127498	NA	NA	SINE	Alu	AluYb9	ggcaggccagggccagcaagacctgggagcctctgctgcccacgacacctacagttttagaatctggagagcagatgcctctggcttgctaagcaactca<br>tgaaacaaacagcttgcttcagggctttcttttttgaagctgactttgttgtttgggtggggagatgtgtgtatagataagcttctcaaagtgatgacat<br>cacaagaataataaaaatgccacattgcaccctgtgtctttcacctcccaggcacgttttcaaaactaatcataggtcaattccccttcttgccagctcc<br>agggacctgcagagatgggaggcgctgctgaaaaccctctaaggggggcagcgccgccttacctctcagagctgcatttccctctct<font color="green"><u>AGAAAAGGGACGA<br></u></font><font color="red">AAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AGAAAAGGGACGA</u></font>gctaggtggattttaaagttcctgccagttcccaattatttacccagaactgattttaactgagtgtttgaccaaagctttgg<br>tccatgagccttccattgccggggtgtttattttacataaaatttatctggatactcacacgtagaagtttttcttttggtatggaaaggggtcagaaga<br>ttctccaggttttgaggggccctgaagcttacacaatttgcaagagtgtctccttcaggaaaataatacagaattactgatcataattcggtgctgggtc<br>ctggtagaggcccaggctgtaatgtgtccagaggcacaaggctcagctccacactctaccctctttcgttgtgattaaaggtccacaggcgtcctgggca<br>aata	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	63487287	63487288	1001799	0	+	1104685562705	NA	NA	SINE	Alu	AluY	gcagatgacccagatcctggttactgtgagaaggtacttcctcagttaacaggatccctgagaaagctggttttgcaatattgagattcctcttgtaatg<br>gtagtccagtcaaagtgatatccaaaaaagtttatttagttttagtgagaacaatcctaaagggttgagccctcacagcgtgaatctccccagcccctgg<br>ttattaatccttgggttcatgtggttgtctaggctcctgagggtaattcgaagcctgagtatgcagaacccgtgttcctttgcttccctaaagtgcgaaa<br>gatttcagaaatggctatcgtctgttacatgaggtacatataccaaatttttaagaagattcaatagtagcagaatatgctt<font color="green"><u>AAAAAAATCATCTGAGGC<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAAATCATCTGAGGC</u></font>tgataggatattagatcatcagatttttttcctatacttaaaaacagcttttgaacaatagcaatataagtt<br>tatattttacatgcacaatgctttttgtgaacatggattataaataaatgaaaagttctgagttatggtatcagatgatatagctatagaaaaattattc<br>acaaagcctaaaatatgagccagtgtctttttcaaagagcccatagatagattttttttttgctaagcgtaagtgacttaaacaattactgattattatt<br>aagcatgaaagtctcacggagttataggtatccaattggtcaagactagactttactagttcagtcatatgatattaacaattttctctgtgtgtgtgta<br>tttatataca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CDH7:NM:004361:4/12	
0	chr18	63884171	63884172	1001800	0	-	1104685562880	NA	NA	SINE	Alu	AluYa5	attctttatgagtctcataaatggtgtcatttttaagagcacaatttcaaaaggcacatatgagaatatagtgatatgacaaaatctgtctaggatattc<br>aaacagacacgtaaatctccaaggggctgggtagaggtcaacatttatacaatatttataatgaagagcccaagaaacatcttttcactattacatttca<br>tgttcatcactgcattacacaccatgaagctgacacttttactggctgaggcattaccacttcaaaatcaaattagaaatcaaaagcttttcttccccac<br>tttggtttgaaaaaatagtaccctataaagactatcaaatatcaaataagtatatttcaagttgtgtgctgctttttttttttctt<font color="green"><u>AGAAATTATTAAAT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAATTATTAAAT</u></font>ttcagtgacataaattccctgaaaattcagtgataattagctactcttaaacttatacacacaactcttggacaaa<br>tcatcttgttatcacaaagcaaagaaatgttgttagcctaacaatactgttggtccatcaccactcattgcttaatggcagattcagccatttttactct<br>tctaagtaatgatgtatagaatgaaggaagaagtgcagaacatagcaggcactcctttttttttttttttggattttgttttaaaaataaagccccctta<br>aagccagaagacccgattgcatcttagtcagtcaactgattaaatgaatgtacatgaacgttctttgtaaggcttagggtgtaagtggtgtgtagatatg<br>ttagggggat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	49513071	49513072	1001801	0	-	1104685128321	NA	NA	SINE	Alu	AluYg6	gcatacaataaaaattgagtgaatgaattccgatgaatcaagaattgcccttggctgcttatggatttaaggtaactcaatgcttctctgccaaaactgg<br>aaaaccttgaaatgttaatgacttaggctatgatatatccataggagaaatgaatgcaaattccctgtcttggtgaaattgcacccctttaccagaggaa<br>ggtagcagaaggtgcttttctcttattaaggacaggcagtccttgggggttactgtacggtgagaggtacctgtatggctgctattctcctgctctggtg<br>tctgctatatttctttctttgtcttttttaatgcctccccaccttggctactccccacttctgagtctgatgaccagatggcatcat<font color="green"><u>AATAAAAGCAAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGATCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAATAAATA<br>AATAAAAAAATAAAAAAA</font><font color="green"><u>AATAAAAGCAAGC</u></font>acagtttatagcagacatcagtcagaacatgggttccaatgcttctggcccaggaagtgagaccagggc<br>tctggctggaacagacatgtgaaaatttaaggttttctaagcaaatagtaagatattataaaaacacttttccactaacattttcaaaattagtgtgttc<br>aatatgaagtatattcattaacattttggacattatttttagataaggagaattaaaagaataatgatgttatgtttccaaaaatgttaaatattaagtg<br>attataagtgaactattgtctgcagagaggcaaaccaatacagtacaattgatatcaaaaggtttctgccagcacagtttgatctctgaatgttcaagta<br>aattatttttatgtttaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	7804025	7804026	1001802	0	-	1104685064212	NA	NA	SINE	Alu	AluYb8	gctcccagggggattggacccaattgcccttttcagctcattggtgcctttgtattgggttccttcctttccctacctgctcctcttcattcatcccatc<br>ccctgctgatgcttcttggaatctcctcccagataagctacttatatccaaatccttgtctcaagctctttagtaggggaaacccaagccaagcttatat<br>tttgataactaccaggcatggctccttttatgtgggagacaaggtcttgctctgtcacccaggctgaagtgcagtggtgcaatcatggctcactgcagcc<br>ttgacctcatgggctccagtgatcctcccacctcagcctcctgagtagctgggaccacacgtgtgcatcaccatatctagctacttt<font color="green"><u>CAAAAAATTTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAA</font><font color="green"><u>CAAAAAATTTTTT</u></font>tagagatggggtctcactgtgttgcccatgctgttcttgaactcccgggctcaactcatcctcctgcctcagcctcccaaagt<br>gctgagtttacaggcctgggccgctgtggcctgcctggtcatggctcttctctatcaaaatgttctcaggtattcttgtgcaatttttggatgatttttg<br>agtctactctggctttaaaggttttcatttacttgtggaataagtcacgtgtgcacacagaaccaaaacgtatcaatctctacagtgaaaactaaagctc<br>attccgtccccgttttcccatctcaagaggttactgtccccacttgtagctttgctatttattcccaactaaagagtataacctctttattatattccaa<br>ataa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	15927952	15927953	1001803	0	+	1104685512540	NA	NA	SINE	Alu	AluYa5	accccacccagtccttcaaaaccaccaatttgttttctggctctggctctatggacttgcctattctagacatttcatataaatgggactatatactact<br>atatataacgatgcattatgattgcccctgtgagtagccacggcactccagccattttgtcaacacaaaaatgtcgacattgccaagactgagaaacctt<br>ggtctgcataaactcacatagagttcactctaagacgctgagtgaaaaaccaagttacggaaagatatctatgggagaatcagatctgcattttaaaaac<br>acacaaaatggtttgacagtttatcaaaaagttaacatagaaattatcaaaggactcagcaatttcactcctaggtatacacc<font color="green"><u>AAAAGAATGGAAAAGGA<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAATGGAAAAGGA</u></font>ttcaaacaaatccttggacatcaaatgtgcatagcagcactgttcacagtagccaaagggtattttttaatttttctgtagagagta<br>ggatttcactttgtttctcaggctgctcttggaactcctgggcttaagcgattctcctgccttgacctcccaaagtgcttggattgcaggtgtgagccac<br>tggacatggcctgatccaaacgtctatcaatggcagatccaaatgtctattaataaataaatggataaacaaagtgtggtataatcatataatggctatt<br>attcagccacagaaaggaatagcatcccagtccaggccacagtagagatgaacgttgaaaacatgtgctatgtgaaaggagctaggcttttaattt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	16076806	16076807	1001804	0	+	1104685512633	NA	NA	SINE	Alu	AluYd8	tgggaagatcgcttgagcctaggagttctagaatggcctgggcaacacagtgggacttcgacgctacaaaaaattaaagaattagccgaggctaggcgca<br>gtggctcacgcctgtaaccccaacactttgggaggctgaggcgggcagatcacctgagcacaggagttccaggccatcctgggcgaca<font color="green"><u>GGTGAAACCCCA<br>TCTCTACTAAAATACAAAAAATTAGCCAGGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCACGACAATCGCTTGAGCCCAGGAG<br>GCAGAGGTTGCAGTGAGCTGAGATCAAGCCACTGCACTCCAGCATGGGCTACAGAGTGAGACTCCGTCTCAAAAAAAAAAACAAGAATTAAGAATTAGCC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAC</font><font color="green"><u>GGTGAAACCCCAT<br>CTCTACTAAAATACAAAAAATTAGCCAGGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCACGACAATCGCTTGAGCCCAGGAGG<br>CAGAGGTTGCAGTGAGCTGAGATCAAGCCACTGCACTCCAGCATGGGCTACAGAGTGAGACTCCGTCTCAAAAAAAAAAACAAGAATTAAGAATTAGCC</u></font>a<br>aacaaacaaacaagaattagcctggtgtggtggtgcatgcctgtagtcccagctactcgggaggctgaggttgggggctcacttgagcccaggagtttga<br>ggccctgattgtgccacagaactccagcctggagttcagtgacagagtgaggccctgtctcaaaaaataataaaaataaaataaaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	23917066	23917466	1001805	0	-	1104685515907	NA	NA	SINE	Alu	AluYb8	cggtggctcacccctataattccagcactttgggaggctgaggcaggcggatcacgaggtcgggagatccagaccatcctggctaacacagtgaaacccc<br>gtctctactaaaaaaatacaaaaaaattagttgggcgtggtggggggcactgttagtcccagctactcaggaggctgaggcaggagaatggcgtgaaccc<br>aggaggcggagcttgcagtgagccgagatcacaccactgcactccagcctgggcaacagagggagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaa<br>ctagcaagctgagttcataagcaaatcaaaaagttattttgccactatcatgtgagctttattttatgaatgcaaaaatgttcatat<font color="green"><u>ACAAGTCAATAAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AA</font><font color="green"><u>ACAAGTCAATAAG</u></font>gtgattcaccttgtaaaaatatataagcaaaaaatcataattatcacaagtgcagaaaaagcattcaagaaaatccagtattcat<br>aaaaatattatcaacaaggctgagtgcagtggctcacgcctgtaatcccaacgctttgggaggccgaggcgggtggatcatgaggtcaagagatcgagac<br>catcctggccaacatggtgaaactccttctctacaaaaaataccaaaattagctgggcgtggtggtggatgcctgcagtctcagctacttgggaggctga<br>ggcaggagactcgcttgaacccgggaggttgaagttgcagtgagccactgcactccagcctggtgactgcgagaccccgtctcaaaaaaaaaaaaaaaaa<br>ag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	2025055	2025056	1001806	0	+	1104685016766	NA	NA	SINE	Alu	AluYa5	ttggtgctaaaagacatggagcactggattctgagcacttgcatcctgttgttcctatagaaaggatttctgctgttaggactctaagactgtttaagaa<br>ttgatttggggtcaggtgc<font color="green"><u>GTGGCTCACGGCTGTAATGCCAGCAGTTTGGGAGGCTGAGGCAGGAGGATCACGAGGTCAGGAGATCGAGACCATCCTGGC<br>TAACACAGTGAAACCCCATCTCTACTAAAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGG<br>AGAATTGCTTGAACTTGGGAGGCAGAGGTTGCAATGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTGTCTCAAAAAAAAAAA<br></u></font><font color="red">AATTGGCCGGGCGCG</font><font color="green"><u>GTGGCTCACGGCTGTAATGCCAGCAGTTTGGGAGGCTGAGGCAGGAGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAC<br>ACAGTGAAACCCCATCTCTACTAAAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGAA<br>TTGCTTGAACTTGGGAGGCAGAGGTTGCAATGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTGTCTCAAAAAAAAAAA</u></font>aaaa<br>aaaaaaaaaattgatttggggtcaggcacagtggctcatgcctgtaatcccagtgcttgggaggttgagtcgggggatcgcttgagcccagggattccag<br>accaccctggggaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	2383651	2383652	1001807	0	-	1104685016930	NA	NA	SINE	Alu	AluY	acaccgcatggagcttgagtttcagacaatcaaacatccttttgtagcctaagtgtgtccctgggatggttcagtctatgcaataccttggccgggcttt<br>ggttctttggtcaaacattattctagctgttgctgtgaaggtaatttttagatacaattaacatctatttatttatttttattgttttgagatggggggg<br>tctcactctgtcccccaggctggagtgcagtggtgtgatcatagctcactgcagcctcgacctcctgggctcaagcgatcctcccacctcagcctccaga<br>gtagctggaatatggatgtgtaccactatgccagc<font color="green"><u>AAAAAATTTCTTTGTAGAGTCAGGGTGCAGTGGCTCACACCTGTAATCCCAGCACCTTGGGAGGC<br></u></font><font color="red">TGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGTGGT<br>AGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCA<br>CTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTTCTTTGTAGAGTCAGGGTGCAGTGGCTCACACCTGTAATCCC<br>AGCACCTTGGGAGGC</u></font>gagataggaggatcactggagtccagagctcaagaccagcctgggtcatgtagggagaccctgcctctaagaaaattttaaaaat<br>cgtaatttttttttttagagacggggtcttgctatgttgcccaggctggtctggaactactggcttcaagccatcttcctgcctcagcctctcaaagtgc<br>tgagaaccactgcacccacccagcccaattaacttctccttttttttttttgacggaatctagctgtgtcacccaggctggagtgcagtggtgcaatctt<br>ggctcactgcaaactctgcctcccaggttcaagcaattcttgtgcctcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	6923865	6923866	1001808	0	-	1104685516359	NA	NA	SINE	Alu	AluYb8	aacgtgacaagctaagtccttcttctatgccatttattcataattaattttaaaattaattttaaatgtctctgagtggtttctgtgggttaaagataag<br>ccaggcaccatcttatgagcacctctctatgatattatca<font color="green"><u>AAGAAAACTGACCATTGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTATGGG<br>AGGCTGGGGCGGGTGGATCACCTGAGCTCAGAAGCTTGAAACCAGCCTGGCCAACATGGCGAAATCCTATCTCTACTAAACAAACAAACAAAAAATATTA<br>GCCAGGCATGGTGGCGGGCACCTGTAATCCCAGCTACATGGGAGGCTGAGGCAGGAGAATTGGTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGAT<br></u></font><font color="red">TGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACTGACCATTGGCTGGGCG<br>CAGTGGCTCATGCCTGTAATCCCAGCACTTATGGGAGGCTGGGGCGGGTGGATCACCTGAGCTCAGAAGCTTGAAACCAGCCTGGCCAACATGGCGAAAT<br>CCTATCTCTACTAAACAAACAAACAAAAAATATTAGCCAGGCATGGTGGCGGGCACCTGTAATCCCAGCTACATGGGAGGCTGAGGCAGGAGAATTGGTT<br>GAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGAT</u></font>acacctctgcactccagcctgggcaacaagagtgaaactcagtctagaaaaaagaaaaagaaaaa<br>gaaagaaaaaaactggccaatttctagttgtgtgattttgggcaagacacttaactgctctgtgccctcagtttc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EMR1:NM:001974:14/21	
0	chr19	53309850	53309851	1001809	0	-	1104685710526	NA	NA	SINE	Alu	AluY	aaaagtttaaatcctcacatctctgaaaagatatctttctttgcccccgcttatctctctgctctttctttctattctttctttctctctttttttatga<br>cagcgtctcactctgttgcccaggctacagtgcactggtacgatcttggctaactgcagcctctgcctcctgggctcaaaggatgcttatgccccagatt<br>cctgagtagctggaactgcaggcgctcaccaccatgcccagctaatttttgtgtttttagtagagacggtgtttcaccatgttggccaggctggtttcaa<br>acttctgatctcaagtgacccacttgcctcagattcccaaaacactgggaccgtaggcatgagctgccatgcctaaccattgttattattttaaa<font color="green"><u>NNNNN<br></u></font><font color="red">TTGTCTTGTAGTTCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAG<br>CTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTA<br>GTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTG<br>AGCCACCGCGCCTGGCCC</font><font color="green"><u>NNNNN</u></font>tgtagttctttagatatttgggcagaggttattgttgcaggtatgttaaacatattaaagttatagcataataaaga<br>aacttaaaattaccataacctggacgtgtgcagtggctgacacctgtaatcccagcactttgagaggctgagatgggcatatcacctgaagtcaggagtt<br>caaaactagcctggttaacatgttgaaacttcgtctctactaaagttacaaaaattagccaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnn	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF28:NM:006969:3/5	
0	chr19	31690678	31690679	1001810	0	+	1104685393921	NA	NA	SINE	Alu	AluYb8	ccagcctgatgacagagcgagactccgccaaaaaaaaaaaaaaaagaaaagaaaaaacatagtccgatggtctttgataaagtaccaaagaccataaaat<br>agtaataaataatcttttcacaaatgatgccaagacaacagaacatccacatgaccaaaaaataaaataaaataaaataaaatctagacgcagatcttac<br>attcttcccccaaatgaatttgaaaccactaaactcttagaagataccacaggagaaaatcgaaatgacctagggtttgatggtaaccctttagatataa<br>tgtcaaagggatgatccatgaaagaactaattgataagctggacttcactaaaattaaaattttctgttttgcgaaagacagtgtc<font color="green"><u>AGAGAATTAAATGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCTGCAGTCCGGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAGAATTAAATGA</u></font>caactcacaggctggaagaaaatatttgcaaaagacatatctgatagaggattgttatccaaaataa<br>acaaagaactcttaaaactcaatgaaagaaaacaatgatccagctgaaaaaaatgcgccaaagaccttaacagacacctcaccaaagaagatatacagat<br>agcaaacagtctataaaaaggtgctctgttccatatgtcattagggaaatgcaaattggagcagcaattacatacctctatatacctattcgaatggcta<br>aaatgggtaacactgacaacaccaaatgctggtaagaacatgaagcaacagaaactctcactcattgctggtgggaatgcaaaatgaaacagccaatttg<br>gaagatagtttgggatttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	26473946	26473947	1001811	0	-	1104685453731	NA	NA	SINE	Alu	AluYb8	cctgtaatcccagcactttgggaggccgaggtgggaggatcacttgagcccaggagtttgagaccagcctgggcaacctagtgagaccctgtctttacaa<br>aaaatacaaaaaactagctgggcatggtggcatgtgcctgtagtcgcagctactcaagaggctgaggtgggaggagcacccgagccaggagttcgaggct<br>gcagtgagccatgatcacgctactgtactcaagcctgggcaacagagtaagatcctgtctcaaaaaaaaacaaacaaaacactttctagaaagaaccaat<br>aattaaaacagagcagctttagcacaggaataaacgacactgatcaacaaaacaggatgtagcagttcagaagcagacccatgtatgt<font color="green"><u>AAGAATTTAGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTAGTG</u></font>ataataaatataacacttgagttagctgagagaaagaaattattccatgaattcactgggaaaatggc<br>taaacatttggaaaaaattttaggttcgcagctcacagcgaaagcacaaataaatgccagacagattaaatatttaaatgtatatattttaaatatatat<br>attctaactataaaagtactagaggaaaacatcggagaatataatatatacatacacacacgtgtatgtattttttagagacagggtctcgctctgttgc<br>ccaagctgtagtgcagtggtatgatcataggtcactgcaatctggaactcctgggctcaagggatcctcctgcttcagcctcctgagtagcttagactac<br>aggcacatgccaccatgcct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:HADHB:NM:000183:1/16	
0	chr2	26623683	26623684	1001812	0	-	1104685453789	NA	NA	SINE	Alu	AluYb8	agctactcgggaagctgaggcaggagaatcgcttgaatctgggaggtggatgttgcagtgagccgagatcgagccactgcactccatcctgagcaataga<br>gcaagactctgtctcaaaaaaacccaaccaaccaaccaaacaaaaactggataccatttaacagggttctgtcccattagcccgtggggaattaagggca<br>ctggatgagcagtgagaaagggtgagtactagtcctagccctgccctgccaccttgggcaagtcacaacttcttgaggagcattttctcagctgttaaat<br>gatgcaacccacagacaactgtgcggccaagacgacccgtcctttgtgagtaagaactgcccagaggcaaatggagtgggttttt<font color="green"><u>AAAATCAGTTCTTCC<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGA<br>ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCAGTTCTTCC</u></font>cgtttgcaagcagtagagaggtttaggaatgccaaaaccatccaacagctatagagtcta<br>acagcagctgcctggatccttgtctcacacctgcctaggtggtggtggtaggagcgggggtacttgcttctaggcttcagggccttctgccagatctctg<br>tctcctttggttgaaacctaaagtattaaactctcctaggagccatgatacagctctgaccaaaaactcgtccaggtcctggttcatgtttccactatcc<br>gtaaggacagaaacaagcatgtgtgcatgcgcatgtctatgcctgggagtgggataccatgagaaagtcagggggaatcagctgttgcacaagaggtaag<br>tgagagcaaaggtaccatacaaacc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	37004250	37004251	1001813	0	+	1104685770234	NA	NA	SINE	Alu	AluYa5	atcacttaaacctgggaggccgagggtgcagtaagctgagatggcgccactgcactccaacctaggtcacagagtgagactccatctcaaaaaaaataaa<br>atggccgggcgcagtggctcacacctgtatcccagcactttgggaggccaaggagggcagatcacgaggtcaggagatcgagaccatcctggctaacacg<br>gtgaaactccgtctctactaaaaacacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggca<br>tgaacccaggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaattaaaa<font color="green"><u>NNNNN<br></u></font><font color="red">TTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT<br>ACTAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATTA<br>AAATTAAAT</font><font color="green"><u>NNNNN</u></font>aataaaataagtaaaaataaagtaaattaatagttaaacaaattgtcagtattctgtttcaaatgagaaagtgcacagttgtaatt<br>tctaaatgataaaaattaatagatataactcgtacaaactaaaggtctttggggtctttgacaatttctgagagcataagaaggctgagaacctttgaga<br>gtgccttaaatttgagagcctttcaaatacatgaagctagacttcatgtctttttttatatctcatcttttccaggatatctctttaatccctccaatag<br>gtctttgctggacttggcagtacaccctctaactatgctgtagactattaataattcatacaccagggcaccccgagcagaacacagtgctgccagggta<br>gtgtgccag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:VIT:NM:053276:9/16	
0	chr2	34255392	34255393	1001814	0	-	1104685769554	NA	NA	SINE	Alu	AluYa5	ggtgcatggaagcaccccatgtttattaactaaactgattacaattatgtatttcagggtctgtctccagctgccttggcatctgttccaactctctgcc<br>ttctcctctccctcaaatctttgagttctttgggtagaggtaagtctcagcaatgccaaatcctgtattcacttttagaaactataacagcagaagcctg<br>ctgaatttcaccttgagagtgtcatagatgtttgcggcttctcaggtctgttcagcatctcttctgaagtgtcctcacttagactgcctgctaaggcttg<br>agaaagtcagcatttaatctcagcataccaccaaagggatgaaagctactccctatcattttttaaacagctaaatgattcaaatt<font color="green"><u>AGAACTGTGAATGG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAACTGTGAATGG</u></font>ccagccatattaacaggtgttgcagtatattaatttcaaaaaggacaaaaaggattttaaaggaacaaccttctgcaaat<br>caagtctaaaactgggtgcaatatgaagtagcctaatgcagtggttttttgtgtgttttgaagactttacatcttttttgtgggcaagagttcaaaattc<br>aggtcagaaggaatcaaggcagaaatgtcatgttaaatgaaaagagaaagaagagaaaaagaacacatttgtataaaggctggggacatgtgtccttgcc<br>tcctcaatgtagatgcccttgcaatgaacgcaaccgcatgactgttcaaagggccactgccctgttaaaatgccctgcctttgaaattctgtataattgt<br>cctaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	31559696	31559697	1001815	0	+	1104685768789	GGTAGACCCAAGGAAGACCTG	GGAGTTAGCAGGACTGGGTTC	SINE	Alu	AluYa5	gactgttggcaaagagctcgccttgcaaactgtggcagcttattgggagccatgccacccactcctctcagggaaatgggtttgggtgattgtcagcatt<br>gggagccatagtgggaaggttctgggctgtgggtaggttgctgcacagatgtgggcatctttactgcctgggagtgccacacggtctgtgtagttctcac<br>tccatagctaaagctcttggtagacccaaggaagacctgaatggggacccatatgcctccttcacccactgtgttgaggtctgcggatggtggatttgtc<br>tgcccctggggttcctctgtgccctccccacttgggaccacatgtacccactttacctataaatccaaaaagcatatcgaattt<font color="green"><u>AAAAAGAGAAAGCCCC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTTTTTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAGAGAAAGCCCC</u></font>acctgagtatcaggaagaacccagtcctgctaactccacacaggttgcagttgcaaaggcaattaaagccactgtacag<br>agcccacttcagcaccactcagaggctgggctggttctgagatccccaaagcggaagcaaccgtcctagcaaagtcttcttttgttaggcattgccaact<br>acaagtatcacataggtgcttcttaaagtgattccaatgactacggaattcttctactactttctgccacatacatctccaaggcagtaatcaatcaccc<br>tataatggaatcatctggtttcccaaggttgcaaagtcctcaaggacatctatgtgtccccagtatcagaatggcacatgatcatcacaggacaaatgtg<br>gttga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	540	220	NA	intron:XDH:NM:000379:35/36
0	chr2	11353707	11353708	1001816	0	+	1104685092182	NA	NA	SINE	Alu	AluYa5	aaaaagtctactgaccagtctctctacctctagtcttgtcctcctcaaatcttttctccacacagtacacagcgatctatctttaatgtacctctaataa<br>gatcatccaatttaaagcccttaagtggctagcccattactacattcaaaatttcttaatagagtattcgctatcttgcatgatctacctcatgccgagc<br>tctgtagcctcattctgaccactgaattcctcatgtccttacataacaaccacattgtgatcttcaggccaatctaacctgatgcctttttcttttttaa<br>gtttcactggaacgtagccacatccattccttcatgaatcacagcagggctgaacagttgcaagaccatataacccacagaaga<font color="green"><u>AAAATATTTATTACCA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>ATATTTATTACCA</u></font>tgcctttaaacgattaaaatttgctgactcccactctatactccagaaaacaaacaatgccttttttattttccatcttctatgtct<br>ttgctcatgctgttctccctaacttagaatgtgcctttgccctacggacctatcctgctgtcaggttagggatgcatcccatacacccaatacatatacc<br>ctgtccataagtcttatcattctatttgccatgctgtcattagaattatctttgtgctttattattacttttaaacttaactattcaactgtgacattat<br>tcaaggcaaggactgcatcctgatatttctaccacatataacacactgaatatttagctgagtaaataaataagtgaatgaaaataaaatgctaact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ROCK2:NM:004850:17/33	
0	chr2	2539950	2539951	1001817	0	-	1104685073984	NA	NA	SINE	Alu	AluY	caccagaggaaagacgcgcttcagatgaaagagcaaaagtccgccaagtcagggacgacagaggctggctctaaaacgtcggtgcttctaaggctctggt<br>ttgattaggaatcacctgggggaggaaccaatgtaataatttctatgttaggaagtcaggcagaggcggcaaggagagcaatggagtggggctcagtggc<br>attagtctgggcaggctggaagcccgtctagtggaactagcacagcacacagacccagcccctgtctttgggcttgtcccttgctgaccagaggattttt<br>ggtcaccttgtccttgagcctgaaatttaaaagaaagatgaagtcttcccacgtgcccctcccaaactcgctcctcatcccatt<font color="green"><u>AAAAAATACCCGCTGA<br></u></font><font color="red">GACCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAATACCCGCTGA</u></font>agggctgcgggcattccagggtgctgtgatgtgtggcagctccagagcaaggggagacagtggctcttctcttctcggaa<br>tggatggggccacccctcggtcattagcccccattctgggtaccacactcaggagatgaacatacctgagctggtgcaaggactgctctgagaggtctcc<br>acaccctgccatgagaggagagatccagggaactgagcatcctgttcctggaataaagacttctttttttggaagggtggtggggtgaaactcattgcat<br>ttaagataccaggtgggagaagaacaaaagtttttttagttcactgccctgaacccattttccagaccggaggactcttgatgctgtctgccctgcttgc<br>ttcg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	9888801	9888802	1001818	0	-	1104685091647	NA	NA	SINE	Alu	AluYb8	tgcaaacagctttacctggagtgagtcttgaaatacctcctgtaacatttcctcttctgttaagtaggaatagaaaactacttcccacgctctacgagaa<br>ttaaatgggggcaatgcatgtaaatgctcaacaaatgactaggaggagaagggaaggcccaaggcagataacctcccctctgttctttcacattcgcatc<br>tatagtttcacagggtttttttcctcctagtaaaattagatcctgacacatattcaaggaacactctgcagctgtttctccaagaacagagagcctgggg<br>atgccccaacttcagcccatcaagccccaagtgcttagtcacctgcttagcccagacatgagggatgccataaagaaaagcaaacaat<font color="green"><u>AACACACCCGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>AAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTTCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AACACACCCGTG</u></font>caaagccatttactaaattagtaggggcagggagcatacaaccctgaaagagcgattaaaccttgcatttg<br>ctccaagcctattccttttccacatctgcatttgccaggtcatctcttcctgacagtcttatcctttttgtgccatggacccctttggtagtttggtggc<br>tgccaataatgaatcaaataaaataatacatagaattactgtcttaatctgtattctgttgctacaacagaatatcacagactgggtaatttgttttttt<br>aaagaaaggttatttagctcaccgttctggaggctgggaagtccaagaacatggcaccagcccttggcgagggcctttgtgctgcatgatgatgcatccc<br>agcaaaggacatggtga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	3718462	3718463	1001819	0	+	1104685041235	GGCAGTGACAGAACTGGATGT	ATTTTGCATTTTGTGGCGATA	SINE	Alu	AluYb8	ctcaacctcaacatgagggtgctggggagttgggctaagtcccgtgttaggacccgccatggccgcatggccccgaatctccctcgctggccccgtctct<br>gtggctcagtctctgctggctccagagcgtggcctggcctgcgcgtcagtggacgtctgttcccgcgtgggggtgttcttgtgggcgggtgggctctgct<br>gtttcccacgtctagccagggcctgccacccagggtctcaatacatgtgttttgaatggcttcaaagactattaaaagcaagttattattttcaaaatta<br>aaataatctctttcttttaaacaataaaatacaattttgcattttgtggcgatagggtttttatagctagtgatattttatttttaaatacatt<font color="green"><u>CCTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>CCTTCT</u></font>agccatgttctaattccttccccgtttcagcgtgtttaagcaaagtctcttttttagttcaacctcattgagcagagggcacc<br>tgtcaggtacagttgacagtacatccagttctgtcactgcctgacttttgaaagtctcaaatcttagcgtcaggagcctagacggggcctcactcactcc<br>cgcagcccccaaggttgaccgagctgccctctcccttccaggaagcacggctgatgctccgaaggagggaagactgacccggtttctggacttcacccag<br>ctgatggacatggcatctgaatccgtaggaggaaaagtaagtgggtctctcatggccaaacaagggttgaaggcatccgtgctaagggcacaactcacca<br>gtgcagagaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	508	191	NA	intron:ALLC:NM:018436:1/12
0	chr2	15519554	15519555	1001820	0	+	1104685093183	NA	NA	SINE	Alu	AluY	acgagaactcaggtcatgaacacacctttctagtgttaaataagaggggtgagctaaaataggagtacaatggggacaagagaggaattgaactcatagt<br>ctagaaatttcagccaggaagtgacttcggaggtttatcatctaatcaggtcccttgtctctctctcttttttttttttcaaaagacttatgccctggca<br>tttaggtcccttgtctctaaacaaagtgaaagctacatgaacgagacaggcattacctacgcatgctgaaaattttcagaacttgaatttataggctatc<br>acatgaatctcttccaacagaagagaaatacacagccttataatcagcaaaaatgaccatgggaaagcgcgctggagaaaaatgtt<font color="green"><u>AAGAAGCTGATGGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGGGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAG</font><font color="green"><u>A<br>AGAAGCTGATGGA</u></font>cattcataacatagtttttctttttatattcaagcaaaaaataactgtgccccatatagtgtagtcaatctgtacctgtgataatat<br>atttggtaaagaaaagaataacaatgcagtttgtacattctgactttccccctccatcttagggaagaatatagagttattctacctggctagatccatg<br>cagctatcagtgaggttggtagaagaattgaagtactctctgctggcagccaaaaccaagtcaatactcttttcgtagctgaccctgtagtggggtttcc<br>ctttatgggctataccagctggaggattttctgaacaagcactgcagtgcatcatctgtccagccaggtggatgttttcaaggcgactagagcacagaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NBAS:NM:015909:30/52	
0	chr2	49733494	49733495	1001821	0	-	1104685773815	NA	NA	SINE	Alu	AluYb8	agaacagaagaatttgctttatagtaaatcttataaacctgttttaatgaagaaagtgagtatctgtatgggagcagattaacaaagaaatagaatagaa<br>agccaacaaagatacacacacatatgtggaaactggatctatgaaataagtggcatggcaggtaagtaggaaaaggattttggaaataattatggaccaa<br>tataatgcatagtgggaaataaaacctgatctccatttcacataatagccagaatcaatttaaagtaactggttaacctaaatatgagtcttacaatata<br>aagaaatatctttgttatttaaggcttgggaagaactttttaaattagacatgaaatacaaaacataaataaaaagtggtaagaat<font color="green"><u>AAAAGAATATTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAGAATATTAAA</u></font>ttttttttccatacaaatacatcatttaataagtgggagtggaggagccaaagtagtaaggaggtatttacaaaa<br>cctaattacaaactgactagaattctgagtatagaaagtcttcctaaattcataagaaaaaggttagaaaaccaatttaatggtacaaaaaaagatgctg<br>tatcagcagctcacagaaaagtaaaccctactggccagtaattttatgaaaagatgacaaaatttactcatcatttttatgaaaatgaaaaccaaaatga<br>gattattattttacaaacttcaatgaaaaatgtttaatgtcccacaatagcaattactggtgaatatagagtaactaggacacttacttgcagtaggagt<br>gtaaattggta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	66658989	66658990	1001822	0	+	1104685777770	NA	NA	SINE	Alu	AluY	gctaattgtaaaatccttatccagaatgaggtttgggcaaacaatttgtactactgtaattacattgtaaaagtgtttagtcccttgattgttcagaatt<br>aattgtataaaggcctagaagttatattaggttcacagtttaaaatggaaagactgtggggggggaggggcacttttcaaaactactgagttgattttaa<br>gtccgcaaactcaaactatctcattctttaaggaaaatttgtgtgtaggtaatttaaagtacatttttatggtaatctggcacatcatggttaaagcatg<br>cagtcgtctagtcttcctcctgctttgaagattttggttatgtttgcaaagggtgacttacctgaaccttcttttctcatctgtgc<font color="green"><u>AGAAAACAAAAGAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCAAAGTGGCGGGCGCCTGTAGTTCCCAGCTTTCTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCCAGGGGGCGGGAGCCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACAAAAGAA</u></font>aaagattaccggaaagcaacaatacaaaataaatcctgttgtcaaatatatatatatatatata<br>ctgaccttttccaaatttgaaaacgtggccgcagagttgtggtaaatccaagccccgttacctctttgccgaagaacccctgaggctgttaaagaccaca<br>gtcctctaagcgtatttcgcaataaatttctctcagttaaattatacttacacaatttccctcgcagttcatttaaggatcataaacgtaggtgtgccct<br>gtcggtgtttggtttgacccccacctcccacccacgcatctccctcctacccccgagtcgcgcagatgcctggcgggcctgatgcggggacgatgatcac<br>acccccgcgagcagccgtcgga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	70797715	70797716	1001823	0	-	1104685778816	NA	NA	SINE	Alu	AluYa5	tccacatccttctggggatccttccactgaccaccccaagatgcctgcaaggccaagagaatccagtgagaggtatattggggtggacgggcatccatac<br>ctgcattgtgggatcagacaaaacacgctgagatggggacaaaggaagtgctatgagtgccactgagaggtctatagggcagtatcagagtccatgggtg<br>gccctgaccatgtttgaggaatcaagggggcccctgaaaaggtgaggttttggctgagcccttaaaggcaactaggagttaacaggagtcatttaaactt<br>ggaagcatggaaggttgtttgtgtgtgtgtgtgtgcgtgcttctgagaatatgagaatgcagtaagtgtgggaataattctaat<font color="green"><u>AGAATTAGAAGGAGGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTTTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AGAATTAGAAGGAGGG</u></font>attttgattgggagcatagctggtgagtagggttgcctcaaccaagtctcatgtctagatatctcttatctt<br>cctgggacttccagagacatacccgagggcacagtactggttctgactgcccagctgaattctgcaagagccagggaactcagagatgtctcccaaattt<br>tacattgtttattatgatctcctggggtaaatcattaaacatgttccaggttcttccttatactaactacaaattccttcaaatcattcacaccaccatg<br>catgtgagaacatgtttggtgtcaagattcccgtacgtgaaagcggcaagggtagagccccgcccacaggatgcgtactcggcattcctcattctcttag<br>tcactaggttct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	75387900	75387901	1001824	0	+	1104685779790	NA	NA	SINE	Alu	AluY	tttatttgttatgcaaataaatccaaaataaattagaaaatatggtagttttggactttaaaagctattcataacatggacactgtggaacagttctgac<br>tggaaatcaaaggaatagaagctgaaataaaaaggaacttgctggggacaaaaaggcaggaataaagaatgattgagatgagaaacaattctgaaagagt<br>taaaaatacagttacaaaatcggattcagcatcagaacaggtaaattgcaaaaaagcaaattagaaatgaaagaaccagctttagaagttgctccacaat<br>gaaaaggaaaagaacaataagataaaaaataatgaggaaatagggattcctggacaggagaactaaccaatttgaacagaagtaatgatt<font color="green"><u>AAGACATAAC<br></u></font><font color="red">CAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAC<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGACATAAC</u></font>agaaaaaaaagttccttaatgaataaaagttgggatctgcttacactaagcaaaatcaatatacgtgagagaggggatacat<br>atccagagatattctgatatattttcttatttcaatggtaaggaaagaattctaccagccatccaagaagctaaacattttgcctataaaggaaaaatat<br>caggctgggctctaatcttctattataatgccagaaaataacggagccacatttacaaaattatgacatgagaaatcttatagagtgataattgtctacc<br>taagttgtgctaaggtaacagaaagaacttctcatgaatataagagatcaggaagtatattcacaataccattcctggaaaaataaacaaaaaccaaacc<br>ccccaaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TACR1:NM:015727:1/4	
0	chr2	96488453	96488454	1001825	0	+	1104685779199	NA	NA	SINE	Alu	AluYg6	attgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcagcgttatttctgagggctctgttctgttccattgatgtatatctctgtt<br>ttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggatt<br>gccttggcgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaaggcattggtagcttgatggggatggcat<br>tgaatctgtaaattaccttgggcattatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcc<font color="green"><u>NNNNN<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCGGAGTTTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGACTCACTGCAAGCTCCGCCTCC<br>CGGGTTTACGCCATTCTCCTGCCTCAGCCTCCCGTGTAGCTGGGACTACAGGCGCGCGCCACCATGCCCGGCTAATTTTTGTATTTTTTTTTTAGTAGAG<br>ACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC<br>CGCGCCTGGCCTGTATCCTCTTTT</font><font color="green"><u>NNNNN</u></font>attgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtatt<br>ttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttgttggtgtataggaatgcttgtgatttttgcacatt<br>gattttgtatcctgggactttgctgaagttgcttatcagcttaaggagattttgggctgagacaacggggttttctagatatacaatcacgtcatctgca<br>aacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactgtgttgaata<br>ggagtggtgagagagggcatccct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	46928953	46928954	1001826	0	-	1104685773117	NA	NA	SINE	Alu	AluYa5	cttacatctaacgaaccacagagaataatgtctaatatttgctgtaccctttctatgtagtaggtaggcacagttaaacctcaccactatgctgtgaggt<br>aggtacttttaacaccctccctttacaaacgagtaaactcaggtacacagtggttaaatcacttgcctaagatcatgtgaaggggctgggatacaaatcc<br>tgtctttctctattataactatgataggaatgatgtattcataatgatcatgtaattctactctctttttaaaggtactaaacccattttaacaaaaccg<br>ccacactaactgaaaataataatgttcacataatttactttcaaaatacagaagccttctgaattttgaaaatcttttaagcaattaattttagcat<font color="green"><u>AAA<br></u></font><font color="red">GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGC<br>GGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA</u></font>attat<br>agaatgctaaactactctagggcattcatttaatattttcacctaaatgacagtttgtctctttccaatgacagggaactatcagcactaacgctaacaa<br>tgcagcatattgttttaaacttttaaataaaagctcacccagttttacaaaatttcatggataaaagtagtcaactcaaacttcttcatccttagaaggg<br>aacaaatcacaaataatccaaaaaccattaacagttggcacgagaatgctttagaaataaacagtgtgaaagtgataaagcaatctctggactggagtcc<br>acagacctgcccaccaatcctggccccaccattaaatagcaatttaatcccttcaactgctctgggccttggtttcctaatctgcaaaatat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SOCS5:NM:014011:1/2	
0	chr2	43024076	43024077	1001827	0	-	1104685772179	NA	NA	SINE	Alu	AluY	agatcttgatacttggcatgttggtgttaagatctcatgggatgtaaagacacctggtttggcaacaccccaaggagactgctatttcatgcttggtaat<br>ctttggagaaccaaaattatattgctactctagcatctaaatttagattattgggtatatattttgaatatgtcttataaagtaaacttctggagcattt<br>gatattaatagtgaaacttctttacaagaacatgtaactaggtttttcttttttgagatactactaaattttaaaaagttgcttttctttttattctaag<br>tagttgtggagttcctcaaatatgctaaacaattttcagaattattcatgaaagctattaaagcatccaagtcaacttattagtataactt<font color="green"><u>GAAAAAATG<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG<br>GCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAA<br>AATG</u></font>ttccctgtctatatgcgtttttagtagtgagagagttttgtctagttttgaatttagttcttctcaggaacagctgacctgacaatggggcctttc<br>tctcaacttgtcatttagttctttcggaagaaatatctcagctgtggttaggctaacttaagctgtagagtttgtggggctttttttttttttcttcctg<br>ctgtaagtttttattttgtttttggactttctacttgttttccaatacgcaatgtgcaaacagtatccttttttactcaaagcttctcggggcttattct<br>ttacttggctctagttcctgattcttgggggtttacctcactcttgtctacctggagaaatctactcatatgttagttttggagcccggaagaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	83831725	83831726	1001828	0	-	1104685781445	NA	NA	SINE	Alu	AluYa5	gaattgttacatattcttgttgaaataatcactttatcattaaataattacagtctttgcaagattttttttactgtttttgatttaatgttcattttat<br>gagatgtaagtataggtactcctgctcacttttggttcccgtttgcatggagtatattttcccatcccgttattttgaggccgtaaatgcctttaccagt<br>tagataagtttcttttatgcagtatatgcctgtgtcttgctattttaatttaatttgccagtctatatcttttaagtggaacctttcatacatttacatt<br>aaaggttaatatttatatgcgaaattttgttcctgtcataatgttaattgttacatagctgatttgcaggctcaattttataaatgtattgaaa<font color="green"><u>GTCATG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGG</font><font color="green"><u>GTCATG</u></font>gagttttatactttcatgtttttttatgatagcatcaatcttttctatgttaggaaattttt<br>gaacatttcttgtaagttttgtctagtgatgatgaattcccttagtgtttgtctggaaaaaattttggttctacttcatttatgaaatttagtttagcag<br>gatttaaaattcttggctgaaatgtgtttttaagaagactgaaaataggaccccaatctctcttgcttgtaagatttcttttgaaaagttcatgttttgt<br>ctgatgggatttcctttataaatggatgcttctctttggctgcttttagtactttttccttcatgttgactttagatagtctgatgactatatgccatgg<br>tgacattcattttgcaatatatgttccagaag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	84590146	84590147	1001829	0	-	1104685781605	NA	NA	SINE	Alu	AluYa5	ttggctataggtatttgactttatttctggattctctattctgttctattggtctacatgactatttttatactagtaccatgctgttttggaaactata<br>accttgtagtataaagttggttaattgatgccttcagatttgttctttttgcttagtattgctttggctatgggtgcatatatgtttaggatagttaggt<br>ggtcttgttgagttgaagacattaccattatgtaatgcccttctttgtcttttttgatctttgttggtttgaagtctgttttgtctgaaattaggattgg<br>aacccctgcttttattctgatttctatttgcttggtagattttcctccatccctttattttgagcttgtgactgtcattgtgtgt<font color="green"><u>GAGATGGGTCTATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAGATGGGTCTATTG</u></font>agaccattaggtcttgctattttatccagcttgccactctgtgcctttcaaatggggc<br>atttagcctgtttacattgaagattagtatttatatatgtagattcgaccctgtcattgtgttattagctagctattatgcaggtttgtttgtgtggttg<br>ctttatagtgtcactggtctgtgtaactaagtgtgtttgtgtattggctgataatgatttttcctttccatatttggtgctcttttcaagatctcttgta<br>aggcaggtctgctagtaacaaattccttcagcatttgtttatctgagaagaatcttatttctcccctctgaggaagcttagattgactggatataaaatt<br>cttgattgaagatttttttccttaaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	112447436	112447437	1001830	0	-	1104685404900	NA	NA	SINE	Alu	AluY	ccaagaagccccttgacagtgtgcccggctggtgagaggattctttgaatgatgtctgcacactgactttctcctaagcgtagaatcactgtcactgaca<br>aatgcagactggagctggggtgtggtgctggcaactgaaatacttggaaagcaatgctgtttgtaatcagattgtccagcctggagaacggctcgtagaa<br>aagttccaaaccaatcaaaatacagacttctcttgatgggtacaatggttgcattcctgggaaattcagtgtattttaagccatgtaaaaaacaccccgt<br>acaatgtttacatataaaatggaattaggttccaggctcaggtaattaatagatttttacccatgaggctgtcaacaaggatgttt<font color="green"><u>GAAAATCATTTGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAGAAAAAG</font><font color="green"><u>GAAAATCATTTGGG</u></font>tgtgggatgattctttgttgtcagggattgttctggatttcttactgcatctgccaaattctgtcagtgtc<br>ccttccctgtcatggtgatgacagaaaaggccctactgattttcgaagtttctctgagggggcctcctcccacccctgccctgagaaaacccacttgcat<br>gaatgaaacattttgtagagcatcagaaagcagactgtacctgccatcatctctgtttgctaaagaggtgcttctctctttcccactgagaacacctgac<br>cattgtaaaagtccagaaacttctgagggtcatccaaaattagccctttgaatcacaacatgttacaatggtttttctggacaggtaatttttttcccct<br>atattgcttgaaatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	98582158	98582159	1001831	0	+	1104685755767	NA	NA	SINE	Alu	AluYa5	atcgcttcgtacccctcccatctaccctaagaacaaagagcttgtaaaccaataaattgggtggaggctgagagttccgggctgtgagcaagcctctgac<br>actctggtcccctggacccaccttttaaactcttattctgtctctttctaactcctttgtctccgctggactcggggtacccgccaggtggtgtggggct<br>ggtttctccaacatttttaaaacaggcactactgcatagattacctggcacataatagctaccacttactaccaagggccacgctgctaagcaccaagtg<br>gacaccaggaatgatgaatctggatggctgtgacaagccccatggctgggcaccaattcatctaatctcacaaacagcacagattactt<font color="green"><u>AGGAAATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AGGAAA<br>TTTTT</u></font>atgaaattagggaatgtgtaatgaaaattactgctcctaaaaatctgaagaaattctcctgtgaatttagattgtgtaaaattacctactcctag<br>acaggctaacttcaaaagctattttctacctttcttttgcctgcccatggagaagtgatttaaatgtaaccctgaaattcacataaaggtagaactagat<br>ggcattagtcaattttcctagggtggcttttcctgctagagctaaaaatttgagtagaaaaagaacagtaatgcaaggataattcagtaaaagagaaagt<br>aagcaaagcctagaaacaaaaaaattgaacaaaagcaattttttaaaaaaaaacttaaattgcaaaattatcaaatttatttgctatcattttg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMEM131:NM:015348:1/41	
0	chr2	106101570	106101571	1001832	0	-	1104685754240	NA	NA	SINE	Alu	AluYa5/8	tattaacaatatttaatcattaagacacaacataaactcagtaaaaaagggcaccagccttacgtggacatttgataaatttccacatcaaggccagatg<br>tgatggcctcatgcctgtaaagcattttgggaggctgaggtcggagggtcactttagcctaggagtttgagaccagcctgagcaatatagtaacaccctg<br>tctctataaaaagaatttttaaaattcaccaagcatgattttgtgtacctgtagtcgcagctacttgggaggctgaggtggggggatcacttgaggctgc<br>agtgagcagaaactcagcactgcactccagcctgggcaacacagtgagaccctgtctcaaaaataagagaaaaaactccagat<font color="green"><u>CCAAAGACCTGCATCTT<br></u></font><font color="red">GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CCAAAGACCTGCATCTT</u></font>cccctacacaatcaaatcccccctcaacataggcaca<br>atgctgacttccatcaccataaagtaattttgcctgttctcaaaatttatgtagagggtatctttcatgccaaacccctatgaacctcagtagggaaggc<br>tacaggttcaagaggctgacgaagagacccagagccaggaaatgagacatggggttttatcaggggcttaaacacaggggagagtccagtggcggggggc<br>caaggcaggaaaactgcaagcatctgcaaacatgtagtttataccgcattttcacttagcaccctcctcccactgacctccacctgtcaaccaccttcat<br>ttaacccaaaactcagggcctcagtcccctgtaggccaagacagga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	173522172	173522173	1001833	0	-	1104685153244	NA	NA	SINE	Alu	AluYa5/8	caggcattcctttatagcaactcagaatgcgctaagactgtacagatttccttcagcctcaacttcttatccttgaaggtaagaataatgctttccttct<br>ggcatagggagagcatctttcacatgggaatttcatctcctgcttttaagaaactgaagaaaggtcagagtgatcttcttgcacctgctattgttcaagt<br>gcctttaacttaaaatagtcaatatgccagagcaagatattttggggtatcatgcttttaactccttcagtaattgtaagaaatctatgagtccataagt<br>gtatcagattttatctgtaaattaatattaaataatacaacctgcacataataaaaaccacaaattaaaaaatataagcatcattt<font color="green"><u>AAAAGCAGTATCGA<br></u></font><font color="red">TTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGA<br>CTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCAGTATCGA</u></font>acacttctggtttctggttcaatatgaaaagagcttggaagtcatcattc<br>tcatcctcacaacaagaaataagctgaacaaaccaaaaatcaacaattcttctgaccaggcacgggtggctcatgcctgtaattccagcactttgggagg<br>ctaaggtgtggaggtcacttgagcccaggagtttaagatcagcctaggcaacatagtgagaccccatctccatttaacaataataataaataataaaaat<br>aacaaaacaaaacaattcttcttagatccatcagagaattgaggtcacagggcaaaccacctcccagaaaatttgcaagacaggaggatgtagagaatca<br>caacttaccaagaacagaagcccagtaataaaaggc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	148650073	148650074	1001834	0	-	1104685264598	NA	NA	SINE	Alu	AluYb9	aaaaaaacaatagaaaagaaactaccatatcttgagttatggtatgatatcaaagaaaaacagtcacaccaaaaaaaaaaattattaaaatactattcct<br>ttttttctaactatgtatctgtgtatgaccagatttccttcatatgcttcaatcaaaataacatatcacaaaaactgaacggagaaacagatacaataat<br>ccagttttcttctactacaacaatcattaagagactgtaattttactaattttttgttttggaaaatatttttcataaaaacttgttctttactaacaca<br>taatggattattattgctattttaaataagttaatatttaaacattttctttaatttttgatatggtaaatattgatatatattactattt<font color="green"><u>AACTTTTTT<br></u></font><font color="red">TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCT<br>TGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAC<br>TTTTTT</u></font>ttggggtctttaatttttaagagctctaaagaagtcctgagactaaaaagtttgagaacagtggttctacaatatactagcacagagatgtagt<br>tataagttgccagtatttgtgggcagtaatggtgccatggacttcctctcaactgtggaagaaattatagcatgaactgacagtgcaaactatgttctgg<br>taactccatctcaaccgtgtataaaagaatgggcccagcacggtggctcacatctgtaatgccagcactttgggaagccgaggcaggcggatcatgaggt<br>caggagtttgagaccagcctggccaacatggtgaaaccccttctctgttaaaaatacaaaaattagctgggcatagtggcgcgcacctgtaatccca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ACVR2A:NM:001616:1/11	
0	chr2	154160685	154160686	1001835	0	-	1104685030615	NA	NA	SINE	Alu	AluYa5	attggtggttctagtccccatgaggctgctgtgagggagtcctatttatacccacccagtggggtctcagtttaagcatcaattttcaatgaattggaga<br>atacttgagtaacttcttccttctcttatttgtcctagcacctcaggctcaaattttatcctgttccttgatggtcaatcaattttatttctttgttgcc<br>tcaatccaattaagttcatctataggtggaatctgcaggctcagcagagaagcagcatccaatccttactaatttctacaaattgccctcatgtgaagct<br>gacttaggcatttttgaatatctacttcccattctattgacccttggtaaatggtgtgccatagttatttgtctagtctggactc<font color="green"><u>AAAAACAGAACAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAACAGAACAGTG</u></font>tctcttgctcacatttactaatggtggtggcatctgataatgagtaatggtccagtctaccttaccaaccatataga<br>cagtgagccagtcccccaccaccccagtgcatgcccagagaccccagtctccaacttgaatccacacaaatcttatgttggacctggcaggttcttctga<br>gaatagtagtttctgaaatggctgctggcattgtactcaccggcaatgtctgaagattctggcctttataagcaatttcaaactgtcttgatcacaattc<br>ctacaaaagcagcaaatctcttggggtatctagtctcaggggtgttagaaagaggctgtgaattcctctatctatccccacccctgccaaaaaaaatctt<br>gacaaaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	154752595	154752596	1001836	0	-	1104685030717	NA	NA	SINE	Alu	AluYa5	tatgtatatacaatttacatcttcatatatatttaatatttatatattcagattaaatgaaagatatatttattcataatttacatattgatatatacct<br>attaaatatataaaatacaggagaatgagaacaaatgtaaaatcaactttagagttttaaaataaatcacacaaacaacattatattatagtcagaaaat<br>taagcaatgtaaagttaaataataaaatggtaatcaaaaaataagtgaaagtagtcaggacttaaagaaaaaagacaaaaggttatcagtctttaaagat<br>tagcaatataagtggtttttccttatacaattagttttctaaatcgaaagtggcaagttttttttaatttaggaaaaaacataaaa<font color="green"><u>ATATAAAATCATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>TAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAATATATATATA</font><font color="green"><u>ATATAAAATCATCC</u></font>taattccagaaacaactatcctgttcttactcgcagactattatttaaataattatatcataca<br>aactattttatgattatattctctttttacttaattgtgaatttcttgtgtgacaatatctttttttatcattacactgcaagatcactgattaatatcc<br>tgttgctatggcatgccatcatttacttattttctgaatataaattatcatcaaatatttgtggcaaaaagaagttactgtgaaggtccttgtgcatata<br>tcttctgccacagcatgattgtttccttaggataaaatgcccagaactgggatttctgggtcaagtagcatgagactgttaaaacttgttaaaccatatt<br>ttatgaaactgatgtacccaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GALNT13:NM:052917:1/13	
0	chr2	138176948	138177001	1001837	0	-	1104685267320	GACTGCTGGAGTTCAGAGTGG	AATGGGATACAAGCCCTTCAT	SINE	Alu	AluYb8 	gacaggaggcagacaaatcttaggcagacagggacaggtccccagtgaaatctgaccttcaagctgaagacagtcctgggtaaattctcggaccagattg<br>agaacctctctgactgtgtgctgtgctttccaccgatcgatccccacccttcacctattttacatatacctaccctttcctaattggttttctacactgt<br>tgtgcccacctttgagtggtgcctttgttttagcctctttttgcatactcaaaccaatcagtacacacgccccattctgaacacataaaagccctggacc<br>cagccacactgagggagagatgacctgacttcaggtggggggcaccttggcatcccatctctgcagagagctatttcatcactcagtaacattat<font color="green"><u>NNNNN<br></u></font><font color="red">GGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTC<br>CGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>ctcaggacccaccaaaagtgggggctgaga<br>gctcaattgcagtggctacaggataagcaccagagtacaagccaggcacagcctggcagactgagtagatggggtatctcctgcagcaaagctggcaaag<br>gggccaagaaaaatcctgcatcaaaaatgtggtatagctgggcatggtggttcatgcctataaacccagcactttgggaagccaacaggggtgaatcacc<br>tgaggtcaggagttcaagaccagccagggcaacatggtgaaaacccatctccagtaaaaatataaaaattagctaggtgtggtggcaggtgcttctaatc<br>ccagctacttggaaggctgaggcatgataatcacttgaacccaggagacagtggttgcagtgagc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1963	1850	NA	intron:THSD7B:NM:001080427:13/27
0	chr2	186001780	186001781	1001838	0	-	1104685650594	NA	NA	SINE	Alu	AluYa5	tgaatacctgaagaatgttgggagctaagtcagtattcgtccacatctgaagactgacaaatcatttcaagcaaaaagaagtatgtaatgtagaatgaca<br>tcatattttatgactcttttatcattatgctttctctcagggaacttctttagaaaaaccgtttccccagagtaagtatatttccatcaaacagaaccca<br>ctgaaacatgatgaggacaaaggctacacctcaatttaataaagatgcctaaatatacaagtcagacctggatattacttatgaagctgcatatatatta<br>aaacattttaagctgtggcatttaatacagctaacataaaaagtgataataaactggtttcattgataatgctaatcattttatagtt<font color="green"><u>AAAAGATTAATG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTAATG</u></font>gtaaaatgttaaaaatgataaaagcttcaataaataaagagtaaaagaggttaat<br>gtagtggtatagctgaaaattcaagaaaagaaggccgtaaagtggaggtttaaaatgtcttttgttttctataaaaaaaaaccacgccattaatatcaag<br>gatatatcaatctacaaggaacaaaagtgcctattattggcttttcagacaagatagagtgcttaaagaacagaattacataaaaataaactttcaattt<br>taataaatgtaaatatttttatttattttttggaaaaggaagcacagtgatctcttagaggaaacaagatggactaagtaaagtgtatattttaggaaga<br>tactgtagtgtggactgtcaatatccagtgagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	181421926	181421927	1001839	0	+	1104685649600	NA	NA	SINE	Alu	AluYa5	atgaacaaaacctccaagaactatgggattatgtaaaaagactgaagttacgactgattggggtaccagaaagagatggagagaatgaaaccaagttgta<br>aagcacacttcaggacatcatccaggagaacttccccaacctagcaagacaggccaacattcaaattcaggaaatccagagaatcccagtaagatactcc<br>acgggaagatcaaccccaatcacataatcatcagattctcaaaggtcaaaatgaaggaaaaaaaaaatgttaaggcagccagagagaaaggacaggtcac<br>ctacaaagagaagctcattagactaacagcagatctcccagcagaaaccctacaagccagaagaaatttggggccaatatttaacattct<font color="green"><u>AAAGAAAATA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAATA</u></font>atttccaacccagaattttatatctagccaagcaaatttcatatctagtttcata<br>accaaagaagaaataaaatcattttcagacaagcaaatgctgagggaatttttcaccaccaggcccgccttgcaagagctcctgaatgaagcactaaata<br>tggaaaggaaaaaactggtaccagccagccactgcaaaaacacactgaaatacaaagaccaatgacactgtaaagaaattgcatcaactagtatgcaaaa<br>taaccaatcagcatcatgataacaggatcaaattcacacataacaatattaaccttaaataaaaatgagctaaatgcaccaagtaaaagacagagactgg<br>cagattggatagagtcaaagctcatcagtgtgctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	192982697	192982698	1001840	0	-	1104685652397	NA	NA	SINE	Alu	AluYa5	ctgcaaagtggttgcctgttagaaacacaatccttacagaactctcaaaaactggcagttgctgtaggtagtcaattgaagaggatcaaacacatctgtt<br>ggcatatccatctgttaccaaaaaatctctagtctaaaattcttgctaaaaaaacttccattttgattagaacatcactgagaagcttacaaaattgaga<br>ctgaaagtcattacctttatggagtaaatcataaggaaataaaaacaaatgtctctcaagtagattaattttattccaaatctattttttttttaaatta<br>atggaactgttaccagtggagggtatccagattcttggcatttggaacaaagaattaggtaaagcccacaaacaaagcaatg<font color="green"><u>AAAGAAAAGCACCGATTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGAAAAGCACCGATTT</u></font>ttgaaacaaaagtacactccacagagtgggagtgggcttgagcaagtggttcaagagcactggttatagaatt<br>ttctggggtttaaacaccctctagaggtttcccattggttacttagtgtacaccctatgtaaatgaaatagtgatcagcaatcagaggctgaagtgatgt<br>tacaaagttatacttctatgcaaatgaagacttggcctgggaccagtctgattggttgtgagatagaaaccaatcagaggtcctttcatctgccatgcag<br>aaaagtggggggtggggaggtggaaaaagagtcacgtatggtccttttgttacttgggcatggaaagttggagttttcattttggagtttggagttctag<br>gaagctagc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMEFF2:NM:016192:4/10	
0	chr2	235546759	235546760	1001841	0	-	1104685077174	NA	NA	SINE	Alu	AluYb8	ttggaacagggaaaatgtaatttaatgtattgctaattacagaaagtggttaattacctaaaaaataagaaaggactgtaagaggtcaagaagcaggtac<br>aaaggagcagctacttattgcaggacaaagaaagtggataacagaggaacaaaagaccaagacagccccaccccacaccaaggctgagattcagacctca<br>ctgaagagagcatggctacagcaggaacacacagcctgacatatgcaagaaacttggcagaggatggccgggcacagtggctcacgcctgtaatcccagc<br>actatgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatac<font color="green"><u>AAAAAAATA<br></u></font><font color="red">CTGAGGCAGGAAAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAAAATA</u></font>ccgggtgtggtggcgggcgcctgtagtcccagctactcagaaggctgaggcaggagaatggtgtgaacctgg<br>gaggcggagcttgcagtgagttgagactgcgccactgcactccagccgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaag<br>taaaaaacttcgcagaggacacaggctggtgctggtctttagaagctttagaagcagctgccattgacagaggttgtgggcaggtgggagtggctcagaa<br>gtggccactggtggagagtatggctagagagagttcctctgcaaaggtgctgggctcctgtgttagtctgttttcatgctgctaataaagacatacccaa<br>aactgggtaatttataaag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	5021132	5021133	1001842	0	+	1104685538953	NA	NA	SINE	Alu	AluYb9	ttgggaggctgaggcaggaggatcacttaagtccaggagtttgagagcagcctgggcaacaaagtgagaccttgtctctacaaaaaataaacaaaattag<br>ctggtggtggcacctgcctgttgtcccagctactcagggggctgaggtgggaggatggcttgagcctgggagattgaagcttcagttagccatgatcatg<br>ccactgcgctccagcctgggtgacagagagagatcctgcctcaaaaaaaaaataaaaataaaaaagaggggccgggtgtggtggctcaggcctgtaatct<br>tagcactctttgggaggctgagactggaggatcttttgagcccaggggtttgagaccagcctgggcaacatagggagaacttgtctctatt<font color="green"><u>AAAAAAAAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAG<br>TGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAA</u></font>aatgctcatacgtg<br>gttggcaggagtgtaaatagcctcaaccaatttggaaagcaatttgccaatactagttaatataacgatctagatagtgggcaacccggattagcctttt<br>ccagatatttgcagctgggaagctctcatacatgttcacagagatacctgcaaatgttcatttcagctttttttttctcaatggcaaaaaactggaaata<br>gcctatttgtccctcaataagagaactaataaatacatctcacaatatacaatcaaaggaatactatgcagctattaaaatgagtgaacttatcaacatg<br>cataaacctttaagacataatgctgagttaaagaggcaagttgcagaaaggtacgtaaggtatgggactatttatgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	213166437	213166438	1001843	0	-	1104685657739	NA	NA	SINE	Alu	AluYa5	aatcagcccaaatttaaatcagatgatattccaactaccccacattagctaatggttataatgagagtgtatcaaaagcaacaaggcacagtattggtca<br>agtatgtcttatatccttagtgacataggatacccctgccaatgttacccttctcaatagcgttgcatttcttgaaagtcttttatcttaaaagttgtat<br>gtggattttcaactttatgtttttattttaaaaaataagatgtgatgttatttttcaaagctcaaaactatgtttaccctataagttacatgcctcctgg<br>gccacatattcatttttaagaagcagagaattatgatgacatatggatttcaggacctctgagggaacttgcatggggggaccatt<font color="green"><u>AATATTGTATGTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AATATTGTATGTGC</u></font>aacggtaatgcctagaagtgtgtggtgtgtaatctatgaatccatatgcatcagtactgacaatattaggacctgttacaa<br>aagttactacactggagagagttccaaatttgtcatgtttaccaagatatgtccaacacctagcaggatgactggtcaaattaaatgcttaattaatatc<br>agttgattgaataaactatttcagagtcacatgatataacacagattaagacaaatttgtgagatgtattacagtgctcgtattttgttcagtgagatat<br>attggtctctaatctttaattcaattcattttaccctatttaaaattttcaggttatacattacagggaattgggatatgcctaatgaatacatgtgatg<br>cttaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	218180772	218180773	1001844	0	+	1104685659192	NA	NA	SINE	Alu	AluYb8	tacgcacaaaaagtccaagctccactggcagaggaacagagtggcatgacagagaaggagagaaaagaagaagcatctgaatgtcgagagaagttcagcc<br>agggacagttggagaggagttcagctggggatggttgaactccagggaaagattaccttcccactgcatcccctttccagctccccatcctgctgaagcc<br>actcccatcactcagtaaaatcctctgcatacaccacccttcaatcctttcatgtgacctgattcttcctgggcacaggacaagaaaagaattcaagatg<br>cactgggtgcaggaacccagaaaggctgtcacactgactcttcagtgagttgtttaacactgaagccatccaggaatggcaaagc<font color="green"><u>AAAAGAAAGAGCCTT<br></u></font><font color="red">TTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCT<br>ACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGG<br>AGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGAGCCTT</u></font>gtttgtaacatatgctttctggggctccagaggtctcaggcaaaccctagatgctgccacaggctggtacgggg<br>tttgtttatgccaaatgcccaaaggtactcaccccagctgctgcacccactcacgtgtgtactcctgctcccacaaggggttggagggtggcagccgagt<br>aaacgagccacacccttgtcacaagtcccaccgaggggtcaaggaactctcctgtctcagcaggggatcagagattctgggagatactgaagaaaatgga<br>gctcactttccagacattaaggttttaatgacacttttagacatgagaaagcaggaaggacttggtgggcaagaaagtcaaaacagagatttgacaaaga<br>cccatcttttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DIRC3:NR:026597:12/13	
0	chr2	223882885	223882886	1001845	0	+	1104685197127	NA	NA	SINE	Alu	AluYd8	caccgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacaccacacactggggcctgttgtggggtgggggga<br>agggagagagatagcattaggagatatacctaatgtaaatgacaagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgc<br>acagtgtgcacatgtaccctagaacttaaattataataataaaaaaaattacttgtaaaaagaaaagaaatccctctaatatctaaacagtggttttaaa<br>acatgttgttaagaaattgatgtctgggttccactttgagaaattctactttagttggggcatgacttgggcatcaggatgtgt<font color="green"><u>CACCTGAGGAACTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CACCTGAGG<br>AACTCTT</u></font>ctgatgcataggctgggttgaaaaccgctctggtgagttgaaaacatgactgcaaattatttgatacttcttccatcaaaaggtggatctaat<br>tccccttgaattaggatattaagtttggcttaatgactcctttctaatcaatagaatgcagttgaattgtccctttgagactttcaaggctggattgtaa<br>aaggcaggcaatagagcattcactcttcctgtcttgctttgtgtttctgtatctctgactctttccccatgcctttgaagctctgagcaaccacataaga<br>acaacctatgcaaaagccgccatgtgaagggattgcatagagagacagcctagaggtagagagagatgtccaaagactgccaggtattcca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	229229744	229229745	1001846	0	+	1104685497715	NA	NA	SINE	Alu	AluYa5	ttaattttaatgaagtccaatttatcaaattttttaatggatcatgcttttggtttcaaatctaaaaacacttttctaaatgtaaagtcacagagatttt<br>ctgctatgtattcttctggaacttttattgatttacattttagatttaggccaacagctatttttagttcatacttcatacaaaaattaactctaagtgc<br>attgcagtcttaaatgtaaaatataaatctgtgaaaccaaaaaagaaaaaaacataggaaaaagtgttgagtatatagagctaggcttagagttcttaga<br>gttaatgccaaaaggcatgatccgtaaaattaaaattaatgaactggatcccatcaaatttaaaactttgctctgtgaaagactctgtt<font color="green"><u>TTCATCCTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>TTCATCCTCTT</u></font>agacaagttacaaacttgaagaaaatatttgcaaatgacatccaacaaaggactagtgtatagaatatataaaatttcaatagaa<br>aaatgtccagttaataaatggtcaaatgacataaacagacatttcactaaagaggagagacagatggcaaataagcccatgaaaagaagtttcggcatca<br>ttagccatcagggaaatgcaaattaatatcacaataagatattactacacctctgtcagaatgtctaaagtaaaaaataatagatataccaaatgttggc<br>tggaattcaaagaaactggatcattcattcattgtggttgggaatgttaagatgatatagccagtctggagaacagtttatcacttttttaaaaaactaa<br>acat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	224176051	224176052	1001847	0	-	1104685197029	NA	NA	SINE	Alu	AluY	tagcctgggagacagaatgagaccctgtctcaataaatgaataaataaaatgaaatacaatagaataaaagtgttcagaagcagcttttaatattctcct<br>tagatatagccattgggattcatttatatgaatgcatatcagaaaccaggcagttggagaccaggcgtgtgctcataccttgcctattacacatgtctag<br>tgaatgaaagtttataataaaagatggatggtttaattttcctacttttagcgtatttgcaaatgtagaaaatcaaacttatttttggcaaatgcaccca<br>agggtcacattgaataataacatctaatatagactttcaagttagtgtaggtttttttttaaaatgatttcttcaaatagcagat<font color="green"><u>TGGTTTTATTTTCTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TGGTTTTATTTTCTT</u></font>ttacagagttaaactgatatgtgatttccccctttcacaccgctgacatcttgcatccacaaaacaaaaacaatctt<br>cctttagatgtaccagtgaatttggaaaacattttttatactcacaagagggtcacgtatagcaagactaattgataaagcataacttagatgttaactc<br>attagggaacatttgcagcacatccgctgccaaggggatgcctttaggatgttggatcagagaaactattgaactctccaatttaaccaggaggcgtaat<br>agctctgggacaattcctgctttgcaaacaagatggtaacaaagaatgtattgaattttgtgaaatctgtaagaaatatccattcaagtaagcaatgttt<br>ggcaaaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	215201641	215201642	1001848	0	+	1104685658240	NA	NA	SINE	Alu	AluYb8	ttagaaccaggataactgatgcaaattttcaaacatgtatataaatataatagccagtattacaacttaaggcatttttgaatactttggagaaggctca<br>ttaaagatgatataaatgtaggaaactacactgtacacaagactattcaatattagaaatattgagccggataaaggctgaggtgagagttacagtttga<br>gttagatagctgtacagtttgggttacataaaggaatatcaaatgcatagaaatagagtgtttttattgtaagcttttacttaaagaaagtaatgtaatg<br>atatatctctacaagtaagatttaaggtaggagaaagtttttataaatattcagaaaggattaatgttagatattaattttctaacagta<font color="green"><u>AAAGACTAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAGTACAAAAAATTAGCCGGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTTTAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGACTAAG</u></font>agctaggagttctctgctgttgaatgaggcttctagactacctcacttcttccaatataactgatcaaa<br>gacaagtttacagagacagaaaattgaagcaaaacagtcacttgcctgcaggtacttgacgccagtcccccatttctgaaagaacaaccttatcatactg<br>ggactccattggaacttctaagaaatcatggtgccaatcctttctgtatgaataattgctaaggttattgctgtgtccaaactaattttttctctttcgt<br>agtaaagttctctcactggaaatgggtaaaagagactacaccatttaaagaaaaaaagagaaggtttaggaagcttgttgtaaaaatactgaagtcacaa<br>acttattaagaaatccactcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SPAG16:NM:024532:15/16	
0	chr2	220936396	220936397	1001849	0	-	1104685198018	NA	NA	SINE	Alu	AluYa5/8	gcctaactcggttctaggcttggctttctgtaaggttggttccatttcctgtgtaagctttcttagctgccactgctgcacactccacctctcccttccc<br>tcgatccctgtagcacttacagtcacagcttagcattgagttattatgtggtaacacaggctagaaactgccagaggcaagagaccatggcttattccct<br>tctcacatccgcccagtgcactcagaataaacactcagcaaatgctcctccattcccagacagaaaggctcaagactcattcacgtataccttgttgaaa<br>atcaccttttaggcccctttcacatatctgttgcaaagagcaaaaaagaattactttccgggtttcctttctcctatttcctct<font color="green"><u>CCAAGGCCATTCTTTT<br></u></font><font color="red">GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>CCAAGGCCATTCTTTT</u></font>gtttatgtgaatttgatgtaaatttgatgcccagtaaattgatgcccagagtacctaacatttcaagagatcagcatgacatat<br>gcatagatattatgcgtcttttgtgtgttgtcattcagcaaatgtcaatggcttttcagaataatagacaatcctgagctattgccacacctgcacatgt<br>actgccaaaaaccactcagttctagaaatatgcagaaaatctccctaatgcctcaggaaatgaagggacatacaaatatggcagctctcatcatttacct<br>catcagcacttagctcaattaccatcttcaaatcaaaaagcactgaagcttccaaacctggagttcgactttaaggttcctcatcaagaaaattctccag<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	226753691	226753692	1001850	0	-	1104685498487	TGTTTCATTAAAACCAAAGGCATA	TGAACATCTACAGTTCCATGAGTTT	SINE	Alu	AluYb8	ttagtagttttttttaatttacaatgatttgatagaatgatttgcatagattttaaactatcaacaccaaagcatatttccaattcaaggaaaatgtata<br>catatagaatacatattatgtgttatgtctagacatgcacacagacatttgagcttggacaaaagcaaggtcatgcctgtttaaagcgattaatctagat<br>gatgtttcattaaaaccaaaggcatatgtaacatttgtaataaaagccaaacaaacaaataaaaactttatttgcctaattacatctgagacattctact<br>ggatactgagctaatagtggtaaaaaaggcagagatggtctctgccctcatggagtttataatctagtatgaagagagagagactt<font color="green"><u>TATTGTTGCTTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGA<br>AAAAAAAA</font><font color="green"><u>TATTGTTGCTTTTT</u></font>acaggacggattattacaaattacaggaattgctatgaaggaaagcagaatataaactcatggaactgtagatgttca<br>ttgacagagtggctttagacatcatctagtgatcaaatgtgatatttcacaaataaataatatattatttgtgatataattgtgatatagtctaaggtga<br>ttatgggatctgtccaaggtcacataactatagggggcatacatcaaataagacatagagaaaattgacagttgattatttttattgcaagaagagtttg<br>aaaatttttaattaaatttttattgacataatagatgtacataattctggggtatatggggtaatatcatactttcatataatttataaagatcaaatca<br>gtgtatat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	598	277	NA	intergenic
0	chr2	232279814	232279815	1001851	0	+	1104685015516	NA	NA	SINE	Alu	AluYb8 	gcccagcatggtggcacatccctgtaatcccagttactcgggaggctgaggcatgagaattgcttgaatccgggaggtggaggttgcagtgagccggcat<br>cacgccactgcactccagcctgggccacagagtgagactccatctcaaaaacaaaaaaaaaaaaaaaaaagaaaaagaaaatagagggtgtctgataaaa<br>atgtaccttctctagtgtgcagcacagtaaatccagcaccccagagatgtcctgcctggctccctggaacccatctgtgcacatgatgagatgtcacctc<br>tgtaattagcttaggttacatggcacaattagccttaaaatagggaaatattctgggtgagcctcatctaatcccatgagacctt<font color="green"><u>AAGCTCTCTGCTTTT<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAG<br>CTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGCTCTCTGCTTTT</u></font>ctcccactggtggcagaaggagaagtcagactagaagcagaattcacatgccattgttgacctgaagactgagggacaaggtggca<br>aggaatgatagcaaattctagaagctaacagcagcccctggctggcagccagcaaggaaatgggaacttcataatgaattctgccagtaatagaaatgag<br>cttggaagaggaccctaaattccaggggagggatgcagctggacagagaacgtagccatgctgtactggtctcctgacctgtgggactgtggcaaaataa<br>atggatgttgtgttaaaaagaaaaaacctaaacactcagaaaaaaagaaaaatgttggcagtacaaagagatattgccagaaacacaaatatagtgagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	22706130	22706131	1001852	0	-	1104685099282	NA	NA	SINE	Alu	AluYb8	actcattttaactgcttcttagtagggtagagtataactagcccacaactgattcagctcttctattgctgagcattgagtgttcctagcttcactgtaa<br>ctgctgcagggaatgccctagagcacaccccaatcctaatatgatgcttggtttgatgatctccttcacatgaacacaagctccttgattttagggacct<br>gcatgttgtgagtccacagttctaagcccagcacatgggccatgggagtattcagtaaggattgtgggataaaacaatgatgagcaatgaaataaaggaa<br>tggtcattaaactaattcaggtaagcaataaaaaggtgtgaatgctgttttcttatttacatagtccctggaacaggaaaaagagtaagataaaa<font color="green"><u>NNNNN<br></u></font><font color="red">GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAG<br>CGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGATACAAGAAAAGATGGTAAACTTATGAGTATAGCTCTAACACATCATGGAGGAAAAATTACCAAA<br>TAGCCCCACCAGCTGGATTGCCAAATGAATTTAGTGATGACACAGATGTTTTAAAAATCAAATTTAAAATGACCCGGTGCAATGACTCATGCCTGTAATN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN<br>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG</font><font color="green"><u>NNNNN</u></font>ttccagaacttttatctgtgct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	33801909	33801910	1001853	0	-	1104685130910	CTGGAGGAAGGAAAAGGTCTG	GCTCAGCTTGTTCATTTGGAG	SINE	Alu	AluYa5  	ggtaaaaaaaaggcaaaggtgcagaatcctggatattgtaggctactatttgtgtaataatcggaaaaaagaatacatgtgtgtgcatgcacttgctcat<br>ttacacataaaatagggacagatacccaaggaactgataatagtgcttacttcctggagggaagcttaagtggtttgaggacagggtgggaaggcaattt<br>ttatttttatttttta<font color="green"><u>AAAAAATAGCTGGGCTTTGTGGTGTTTGCCTGTAGTTCTAGCTACTTCGGAGGCTGAGGCAAGAGAATTGCTCCAACCCAGGAG<br>GCAGAGGTTTCGGTGAGCCGAGACTGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGTGACTCCATCTCAAAAAAATAAAATAAAATAATTAAAAAAAA<br></u></font><font color="red">TTTT</font><font color="green"><u>AAAAAATAGCTGGGCTTTGTGGTGTTTGCCTGTAGTTCTAGCTACTTCGGAGGCTGAGGCAAGAGAATTGCTCCAACCCAGGAGGCAGAGGTTTCG<br>GTGAGCCGAGACTGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGTGACTCCATCTCAAAAAAATAAAATAAAATAATTAAAAAAAA</u></font>tgtatttttagt<br>agagacagtgtttcaccatgttgggcaggctggtctcgaactcctggcctcatgtgatccgcctgccttggcctcccaaaagtgctgggattacaggtgg<br>gagccaccatgcctggctggaaggagatttttctcactgtatacctttttgtatcttttgactttttaatcatgtggatatattatctcttcaaaaaata<br>agta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1422	1234	NA	intergenic
0	chr20	13704161	13704162	1001854	0	-	1104685541024	NA	NA	SINE	Alu	AluY	tttagtacctggtggaagtaaaatatagtcattatctaaggatatagaccttgcttttcaaaaatatttaagatataatgaatttggcacactagtgttt<br>tcagtgtacagttcaagttctgtagttaaacaggacaaaaacattgtaaaccagatgacttgggtacatttataacatttttgctctaggcaatcccata<br>gagctaaacttatgtgccttcaaaatgtggaggaaatgagttcattgatgccagacctggcgtttggctcagattaggtgccagggtgaatgttagagat<br>cttttataattttttcttctatcttttataattttttctttgatttccttctaaattgcaaacttggtgtcaaatgagagtttt<font color="green"><u>AAAAATATCATCTAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGTTCAGGAGATCGAGACCATCCTGGATAACACAG<br>TGAAACTCCGTCTCTACTAAAAATACAAAAAAATAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAT<br>ATCATCTAGG</u></font>tgagcacattaatgagctgaaaatgaaatgaaatattagaaaaatctgctaattttccagtggtagctggtagaatctgagtcctagtgg<br>gcttccctttattttttgtaattttacaacattgtaaagcagcaccagaatgtggtagcctagagggagattaaccctagagggagattatccttaacag<br>actgcatttgattatgggcaagtgatgcaggaacttggtacaaaagagtaaatcactagggcgcttaccactcccatctggtcagtactgagaccacatc<br>catctgccctccagtgaactttcttagcttctctcatatgaattgctcaactaaaccctctggaggaagtttattatgggaacaagtctctgac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ESF1:NM:016649:11/14	
0	chr20	15087673	15087674	1001855	0	-	1104685541458	NA	NA	SINE	Alu	AluYb8	ttttagcaaaattaaaagagcttgacaacaaatggtagttttttttttcaactattaattggttatgtgtcagctcagcttcctagaactaaattacttt<br>ctgaaaaatagaattatatatttttgttgcttgctaagaaaatgttgcccagaaatttaaacataattcatttcatatgtgtgtttgttttcagtgtcat<br>aaagcagggagaagtttagaaaaggtagaagaggtaaactggtcatattttatggttccataaaatgctggaatgagaattcaaaccccaggaaatgttt<br>taagctgtaatacttgtttaaaaacaaaatcccaaaagccttaaatgttatgaattacagaacaatctatatacataaaggtatat<font color="green"><u>AAAGGATTGTGTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCTACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGGATTGTGTGT</u></font>tctgtgatgtcaaatattatatacatataaatcatacattaggggatacataatatgtgtttgtatgtgtggtgtgat<br>atttaatgcatatatactttctaaaatacaatgtgtttcatattaattttaccagtggttaaatgttcaatgctgttgctataccaaatatctatggcag<br>atcactgtaatagggcacttaatgtaattcaagagatatatttgtgcacctaacatgtatctgggcagtgctctgtcctggaaatgtgaatgggaacaaa<br>acaagatgggttctctgtagggcagcactatccagaagacatatcaacaatgcaaactcaagaaccactatctggggtgatggctgcagataccacgctg<br>ttccacgc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	16228651	16228652	1001856	0	+	1104685541753	NA	NA	SINE	Alu	AluYa5	attggtaagcgtcctaacctttagttaggaggctctcttcagccgagggcaattcttaggagagggactcaactgaggaccatcactagacagcattcct<br>agcacttagggaaaggagtgcctcgtcctgaaggggagatctgggaggagctcctgaatgaagagggtcctagtagggggcagtgtagtgagggagtcaa<br>agtaacattcccaaatgtgaggcttcaaactctatttacctggtaccagcagccagtgcagcctgaacactctgacctcgggagaggaactatgagctag<br>ttccatgccagctcctgaatctctcacatgggattctaagagtatcagagggtgagaataaagagtctctggaattaatactctgttgtttct<font color="green"><u>AAAAGCC<br></u></font><font color="red">CCTGGGGCCCGGGCGCGGTGGCTCACCCCTGTAATCCCACCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGCCCATCCCGGCTA<br>AAACGGTGAAACCCCGTCTTTACTAAAAATACAAAAAAATTACCCGGGCGTAGTGGCGGGCCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAAA<br>ATGGCATGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCCCCCCTCCCCTCCAGCCTGGGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCC</u></font>tggggaacttaaatgctggttgttggggtttcggttcaagaaaattctattcagatttgggttacagaa<br>actacattaatagccaagaaaagagggacatggacctcacactaaatcagttcaaggacaggaaaaaaagcagttgtttaaatgggaacactcaggggcc<br>aacaagagtgtgtttcttaaagtgtgtcaggggaaaatcaattcccaaaaagtggtaggaaattaaaagaaagtcttttaaaaaactgtaatcagagaat<br>tagtctaaggcttcttattaaagaagtcttctttttaaaggagaatcacacagaaatccagaaaatttggtacaaagaaggtgggggattctgaaacaaa<br>gaacaatgagataaatatagtagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	23817351	23817352	1001857	0	+	1104685577526	TCCCCCAGCATATACATTTCA	CGCAAAAGCTTTGTTAACCTG	SINE	Alu	AluYb8	tttttgtatttttagtagagagggggtttcaccatgttggctaggctggtcttgaactcctgacctcaggtgatccgcccaccttggcctcccaaagtgc<br>tgggattataggcatgagccaccacatctggccaacaataataatattaataactattcttggtattattattattaatagtgatattcccattactttt<br>atctttctctcaaaatcgagataaaatgtgatataatggacatgcaatcacaagttttattttatttttaattataattcccccagcatatacatttcac<br>aaaactaactaaaattaattttgcctcaatatctttattttttaaataaaatgtagatgtagcctaacagatcaatgagactctgtagtctgtt<font color="green"><u>AAATAA<br></u></font><font color="red">AATAGGAGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGG<br>CTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATAAATAAAT</font><font color="green"><u>AAATAA</u></font>ataaataggagctaactgacagaaaaagattctaattatttaatgtgcattaa<br>aaatatcaggttaacaaagcttttgcgtaatcttatgcaatacaaatgttagttttaatctttttgcatggctgtatcttgtatctgcagcatctctatt<br>tcacaatcatttccagctgtatgacagaggctggaattaaatcttctacaagtgattttcaggagtaaggatccatgagtatagctactttctgaaattc<br>gtgcgtgtatgcgagagagagagggccacaaattagttataatatcactctggtcaattatacccagcaattgtagaagaaaagatattagatttttaat<br>ttaaaagctatagacaaaataactctccacttcttattaga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	549	199	NA	intergenic
0	chr21	28221354	28221355	1001858	0	-	1104685579054	NA	NA	SINE	Alu	AluY	tctaagcccccagtttgactctcgctatgacatcttgggaaaactacttaacccttttgagtctcatttctgcatcagttacacaaagggagtcgatctg<br>gcagatcatactcctctgagttctgtgagggcatgatgtggagggaatatcaattttgagtctaaatgcaagctacaataatttttctgtctccaatatt<br>tgcaatacttctgggtatataacctgtttaaactagaagttttctaactactttctcatttgtgatcaattaaaatatccatttgtccaatattacttta<br>gaccatatgttcccaaaagtaggactaataccaaacagcttccctatttctaattagtcaatcttatggtactaaaatgtgaataa<font color="green"><u>AAAGCATTTCCCGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAACA</font><font color="green"><u>AAAGCATTTCCCGG</u></font>tatgaaatatgcacattagttgtttctctagacaatgtttacattaaaacaattctaatagctcatgtatattacca<br>gatttcctcatttcatggctacttgttgaatacttactttggtatagacgtcgtgaaaattgtgaatagaatattgtgtctataacatatgaatcagtga<br>aacaaataagaacacataaggtgtaaatagaaattgacaccttgatgcttatctctcactttaaaatgcagacaacttgttctttttttcagacagtccc<br>tctgttcatagaggacaataatgtgtttaataggtcaaactgttaattgttccaataattttatgtcaaatgttttgagttttgttctgttatctctaga<br>aataaaaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	39057838	39057839	1001859	0	+	1104685007383	NA	NA	SINE	Alu	AluYa5	aacaccagtaaatatattgaaagatgcccaactacatgctagaaaacacgaatgacacccgttttcacttatcctactggcaaagatcaatgagttgttt<br>ctacccagtgtggatgaaaataggtagacaaaggcgtgcctgtctctggaggtaggattggaaatcaaatgatcctttgtaggagggcaatttggcaata<br>tctttaaaagcaaaatatgcatatcctcttttatcccatcaatctcacttctaagaatctatcctggccgggtgctgtggctcacgcctgtaatcccagc<br>actttgggaggccaaggcgggcggatcacaagttcaggagattgagaacatcctggctaacatggtgaaaccccgcctctac<font color="green"><u>AAAAATACAAAAAATTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGCCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATACAAAAAATTAG</u></font>ccaggcgtggcgcgtgtgcctgtagtcccagctgctggggaggctgaggcaggagaatggtgtgaacccaggatacgg<br>agcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaat<br>ctatcctatggatatcagaggtttactgcactgttatttgtaacaaaaaaagtagaaagctgtctataatattctctagagcactagttatagaaatgat<br>cgtatgtccatcaaataaagtattattttgcaatttaaaaagaacaagttaatgtgttaataaagatttgtggtatatgttaaattaataaagagcagtt<br>gacc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KCNJ6:NM:002240:3/4	
0	chr22	26953732	26953748	1001860	0	+	1104685553540	NA	NA	SINE	Alu	AluY	ctgtaaaatgggcccaataattcttactagcgatgctgctgtgaggattaagtgagataggggcttaataagggaaagaccagaggggtgtggctaatgc<br>cttgcagctcttcaataactgtgagtcccatctgaatctaccgatgagaaatcagcagtggtgagcaggaaaagtggggaaaggagattggcaagctcta<br>gactgtgccaggctttgaatgccaggtaaggagcttggagttatcctggggacggtgggaaattgtgagcattggtctggttgtgacctgggaggggaca<br>caggctctctctggtgtaggatgcctgaaaagacaagggctggaggccaagtgatagctgctgggggacccagggagccatctcaaagaagagag<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAGAGAGATGGGG</font><font color="green"><u>NNNNN</u></font>cgtggtggcccatgtctgtaatctcagcacttcaggaggccgaggagggaggattgcttgagctctggagtt<br>caagaccagcctgggcaatgtagtaaagctccatctctacaaaaaaattaaaaattagccgggtgtggtggcatgctcctgtagtcccaactacttggga<br>ggctgaggccagaggatcacttgagcccaggaggtcaagactgcagtgagctgtgatcacaccactgtactctggcctggttgacagagggagactccgt<br>ctcaaaaaaatatatattttatataaaatttatatatatatattatataaaaattattatataaaaatatatataatacacacacacacacacacacaca<br>cacacatatatatatgtcgccca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr22	33528513	33528514	1001861	0	+	1104685555475	NA	NA	SINE	Alu	AluYg6	ggagacacagccaaaccatatcaaccttcataactatttatttgtgtatttacttatttatttatttatttttttgagacaggatctcactctgtcaccc<br>aggctggattgcagtggcacaatcacagcttattgcagcctcgacctttctggcgcaagggatcctcccccctcagcctcccaagtggctggggctacag<br>gcgtgcaccaccatgcctcgctaatttttgtgttttttgtagagacggggtttcaccatgttgccaggctggtctggaactcctgggctcaagaaattct<br>cccacctaggcttcccaaagtgctggaattacaggcatgagccactgcttctggcctccataactatttaaatataatgttgaat<font color="green"><u>AAAAGTCATTATTAG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCTGGCTGACAGG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTCATTATTAG</u></font>tatttttgtacttaaaaatttaatttggaagctcaagtttttatgaagcaaaagagtttttacttttgatttatcagcct<br>aataactcctcatgtatgatagaacacacagcacttgaattaaaatttattacagggagtctggttgtctaagattttttctggcctttcagcaaccaca<br>gattctttggtccttccttgatgtgtccaccctcctcaagtagcaaatcatttgcttcttttattcctccttgattctcaccacatcacttccagactgc<br>cctgggaaaatgaaattcttcatctattatcgtgcatgtaacatacacttttaagacgataatttattgtttcccgtcttatactttcttttttaggctc<br>tggtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	44386042	44386043	1001862	0	+	1104685027451	NA	NA	SINE	Alu	AluYb8	aggagttcaagaccaacctgggcaacatgatgaaatcgtgtctctacaaaaaaatacaaaaattagctgggcatggtggcacacatctgcagtcccagct<br>actcttgaggctaaggtgggagggtcacctgaatgcagggaggatgaggctgcagtgagcagagatcctgccactgcactgcagtctgggcaacaaagtg<br>agaccctgtctcaaaaaagaaaaaaaaatctaatttcaattaaaataaaattaaaaaga<font color="green"><u>TTTTTGCATTTTTTGTAGAGATGGGGTTTCACCATGTTGAC<br>CAGGCTGGTCTTGAACTCCTGACCTCAAATAATCCACCTGCCTCAGCTTCCCAAACTGCTGGGATTACAGGCATGAGCCATCGAAACTGGCCTTCTTTTT<br></u></font><font color="red">ATTTGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGTTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTTTGCATTTTTTGTAGAGATGGGGT<br>TTCACCATGTTGACCAGGCTGGTCTTGAACTCCTGACCTCAAATAATCCACCTGCCTCAGCTTCCCAAACTGCTGGGATTACAGGCATGAGCCATCGAAA<br>CTGGCCTTCTTTTT</u></font>tagcccattggtagtggcatatgcctgtaatcccaggtactcgggaggctgaggcaggagaatcatttgagcttgggaggcagagg<br>ttgcagtgagctgagatcatgccactgcactccattctgggtgacagagtgagaccctgtttcaaaaaaaaaaagaaaattatagctttgaagaattggc<br>ttttcttccccccgagacggagtcttgctttgtcgcccaggctggagggcagtggtgcgatctcggctcactg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr21	44449853	44449854	1001863	0	-	1104685027393	NA	NA	SINE	Alu	AluYa5 	ttactcaattgggtgctgtttgcttgtttgacctaaagttaaaataaaacacctatatatgtttagggaatgttcaacaggg<font color="green"><u>TTTTTTTTTTTTTTTTTT<br>TTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGAAACCTCTGCCTACCAGGTTCCCGCCATTCTCCTGCC<br>TCAGCCTCCCGAGTAGCTCGGAGTAGCTACAGGTGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTCACCA<br>GGATGGTCTTGATCTCCTGACCTCGTTATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACCGCGCCCGGCCCAGAAACAGTTT<br></u></font><font color="red">AAAAAAAAA</font><font color="green"><u>TTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGAAACCTCTGC<br>CTACCAGGTTCCCGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTCGGAGTAGCTACAGGTGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGT<br>AGAGACGGGGTTTCACCGTGTTCACCAGGATGGTCTTGATCTCCTGACCTCGTTATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAG<br>CTACCGCGCCCGGCCCAGAAACAGTTT</u></font>aaaaaaacaaagcaaacaaataaaaaaaaataaaaacacatgcacacaaaaccatccaaaatatgaagacctc<br>atgcgaaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PKNOX1:NM:004571:10/11	
0	chr22	17705309	17705310	1001864	0	-	1104685013467	NA	NA	SINE	Alu	AluYb8 	tccctcttcttgactgtggatataagttgctgatgtttgggagactaataggggagaaaggcttggaagactcagtgttcaatatgcaaaatttaaaaaa<br>agtcttcatttttagtatgataaccccatccttaactaggccagaaactctgttttacctttccctgaaaacaaatcttcactgctctgctgaagaggga<br>gtgggaggaatgtctgtggctctaggtttttgttaaaaaggctttccagccattcctccatttctcctgctttggacttaccttcagcctcactttcaca<br>ggtatccgaggtttctttcgtcactgctggtttcagattcagtgtttgttttttttgtttgtttgtttgtttttttgtcttc<font color="green"><u>AACAAGTGCTAATAATTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGCGGTGGCCGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AACAAGTGCTAATAATTT</u></font>tatgtaccttccatcttccaagtttttttttgctattttctcctttcttgctttcttcaaccttgtg<br>aatatatgcttaatttttttccccactgtcattttagtgcaggttttggagaggaactaaggttaattcatgtgttcagcctgcaatctctaattgagaa<br>tccatccatgcacttgtgaatatgccccaactcatagagcaattgaaggggctctcactggtactgttggagtatcttgttcttcagtccctagaccaca<br>agaagtaaagcattagagggagaggattgctggaatttagacctacccagaatgacaagtgaactgcataggaagggacagaaaaattatataaaaatac<br>atacaagcagagcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr22	19361461	19361462	1001865	0	-	1104685036367	NA	NA	SINE	Alu	AluYa5/8 	nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>tggtctcaaactcctggacctcaggtgatccacccgcctcagcctcctaaagtgctgggattacaggcgtgagccaccgcgcgcggtctccatgcttcta<br>aatactttgaaatgctggattaaatgcaaccctcgtccctaaaatgaataactagttcacaggaaagagcagtacccagagtctaaaatctaaga<font color="green"><u>NNNNN<br></u></font><font color="red">CAAAAAAGCCAGAGCACAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGA<br>GACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>agccagagcagtgagcagaactgcaccatgggtgcaaggctaggggtcttgactgaggaccttgagtt<br>ttaatgaccacatcgacttgagacaaggcctggggtctaagccatgtaggagttggaattaagtcaccagcataaagtcaagctgcttaaaaaaggactg<br>aggcagacctgggaaaacccaactgacagcacaagaactagcagagaagttggaatgtctcagcctgtttttgggttgggataacagtcttcccttgaga<br>ctgtgtaaccacaggtctgccctcatgtggattcagggccagtttaatactacttgtgttgtatagaaatcgccaagccgagaaatgaacacaaacgaaa<br>tcctggtctaattgacgttcagaggca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:HIRA:NM:003325:15/25	
0	chr3	6395834	6395835	1001866	0	-	1104685146931	NA	NA	SINE	Alu	AluYb8	gcctgtgctcctgatgcaaagacagtaaaaatgttgttttaagccactaaatgatcaaatacagactacagataatatatataatcacattaatactttc<br>ataggaatataatttgtatataattatttagcggactacatttaaaaaaaatttgaaggcctctttgttgttagatcgaggggatgttggggcatcttta<br>gaaccataagacagagtgcctgacacataccagctgcttatcatgtttaaggagatagtttcttaaaacttttttcccgaagcttgaaacttcactaaat<br>gtgtaagatacattctcaaagaattagctgtatatacaactaaacttgccggagcattatcagctttaagaagatagaatagtaga<font color="green"><u>GATCTCAAACTCTT<br></u></font><font color="red">CCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA<br>GCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCCTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT<br>TGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GATCTCAAACTCTT</u></font>aagtcagacggataggagtctcagttactctttttttgaatctgcttccacatctgctaaatgatagtattttaataattacc<br>tcattgggttttggggaggattaagtgagatgaagaataacattgtgtcttgcacaaaagaaatatctaaatgctaacaattattactgagattttaaag<br>aagtttaatatacatgatctcagttattaaaaaaatcatttgacattgttttatctgattttattttataaacaaagagcaattaggttgctcatccact<br>ggcacaaggctagccatagccatgttgcctgagaatcactttagagttgaactggtttagttaaatgagataatgaataaatagggcttacctggcccct<br>ggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	7130383	7130384	1001867	0	-	1104685146832	NA	NA	SINE	Alu	AluYb8	cagagagattaaaacaaaagtaatgggaagtgtccagaccttttgttgttgctgtttggtaatcgacatttgctttttgttggaggaaactgggcttttc<br>tcttctcagcttgagcaataacaaattgggaactgaagagagctctgtttttaagaggacagctgtatgtataccctcacaggatgtcctctttgccaga<br>gtagtcagtttagactatttagaaaagttctaactaaattcttcttacaaattcctgtgtcatgctttatgcgttcctccacatagtagttgtgaatcct<br>taaatctttgggtcaagaggtggagggcactgtcacacaagcctcttacccctgccgttccaactcgcgccactggtgcttcgatgaa<font color="green"><u>CACTGATTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>CACTGATTTCTT</u></font>aacctccaatgtccttgtggcttcagataattttagaggtagaaagaatgaacaaaaggattcattcaacgatccatgtttg<br>tttttaaagtggagaggttgtaaccaagtgtttcctgaggccacacatttagatgatctctggcccctatctctcaaccctggcactgcaaatgtagcca<br>ttttaaaagaaaaaaaaaatttagataatatcccatctagagtcaatacactatttttgtcatttaaaaattccacttacaacccaaattcttcacttca<br>taagctattttagattcttgcttacagatgttttgattggaagattctcttagttcctccttcaaggcatatttgagttcattgcccctttttacaatca<br>gtttca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GRM7:NM:000844:1/10	
0	chr3	7614534	7614587	1001868	0	+	1104685146708	NA	NA	SINE	Alu	AluY	ggatcccctggggctttgcagtgaaatacagttctggatccttctatggatgcccagggtctactgcagttaaaaaaattctaataatgctggctgggca<br>cagtggctcacgcctgtaatcccagcgctttgggaggctgaagcgggcggatcacaaggtcaggagatcgagattatcctggctaacaccgtgaaacccc<br>atctctacaaaaaaaatacaaaaaaattagccaggcatgggggcgggtgcctgtagtcctagctactcaggaggctgaggcaggagaatggtgtgaacct<br>ggaaggcggagcttgcagtgagccgagattgtgccactgcaccccagcctgggtgacagagtgagactctatctcaaaaaaaaatatatatatat<font color="green"><u>NNNNN<br></u></font><font color="red">AATAATCTTTCTACCTATAATAATTCTTTCTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGG<br>TCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAATCCCAG<br>CTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCAAAAGAGC<br>GAGGCTCTGTCTCGTCTGCCATGAATGTAAGAAAATAAACAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tctttctatctggagtacatttaaaaaaggttgacttttata<br>agttttgaataagtggaatctgaattggcaatgttttttattgtaatatagtccctaaattctgttcgctgtctagtcatgctacttaatgttcagaaat<br>agaggctgagtttaaaaatgtcttgaggtgttgcagaattccttaccaagcactcgctagctcctctacctcacccctcctcatcagaaccaaaacctgg<br>cgctttcctagtattgaaaattcaacatacctatgaattcttcctaaaaagccttttttttctatcaattagataggacaaatgtattttaatgaacaaa<br>tggcattttaataaaaaagttcttttttttaaattagctgattctattaaggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GRM7:NM:000844:7/10	
0	chr3	12137072	12137073	1001869	0	-	1104685218246	NA	NA	SINE	Alu	AluY	agtagggggaaagaagaaggaatggtcaactttgttgaatgatggcgacagaacaagttcaatgaagatagagaaatacccaccaaatctgtccaactgg<br>gggatgatggtcctt<font color="green"><u>GTAATCCTAGCACATTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCATCGAGACCATCCTGGCTAACACAGTGAAAC<br>CTCGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCTAGCTACTCGGGAGACTGAGGCAGGAGAATGGTGTGAACC<br>CGGGAGTCAGAGCTTTCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br></u></font><font color="red">CAGGCGTAAGCCACCGTGCCCGGCCAATG</font><font color="green"><u>GTAATCCTAGCACATTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCATCGAGACCATCCTGGC<br>TAACACAGTGAAACCTCGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCTAGCTACTCGGGAGACTGAGGCAGGA<br>GAATGGTGTGAACCCGGGAGTCAGAGCTTTCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAA</u></font>aggctttagtcactgctcccagcctgacggtcctttaaaaaagagctattttagtgtaattgaggggaatggtacggaagccagac<br>tgtagtgagctgaagagtaagtggaaggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SYN2:NM:133625:2/14	
0	chr22	50273381	50273457	1001870	0	-	1104685299623	NA	NA	SINE	Alu	AluYb8	cggactgaacagtgggcttcacaacaacggccgctcttttaagccgtgttaggagccacccgaacacagcttaaaacgccagcctcaagaggaggaaacg<br>gtctatgattaactttactacaacctaaaacaagtctcaacagcatttaaaggaatataacaaaatcctgcacccaataaagtaaaatacaaaatggctg<br>acaaaaacaaccagacctgcgatgaagcgggagaaaaccacctctgaccaggagaaaaaccaaccaatagaaacaggcccagacactgaccaggagaaaa<br>accaaccaatagaaacaggcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaaccaata<font color="green"><u>NNNNN<br></u></font><font color="red">AGGCCCAGACCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>caggcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaacca<br>atagaaacacgcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaaccaataaaaacaggcccgg<br>acataagacaaataataaaattagcggacaaggacatgaaaacagctattgtaagagcggatatagtggtgtgtgcctgggcaacatggcaaaacatcgt<br>ctctgcaaaaaaatacaaaaattaggctgggtttggtggctcacacctgtaatcgcagcacttcgggaggctgaggcagacggatcaaccgagctcagga<br>ggttgagaccagcttggc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZBED4:NM:014838:1/2	
0	chr3	4205092	4205151	1001871	0	+	1104685147608	NA	NA	SINE	Alu	AluYa5	aaaatgtaaagttcttatttagcccaactgaaggaagaaaaatgcccagtatggatcaaaaatgtacaaatgtctgatgtaaagtcattgggtgttgaac<br>taagcagcagcctgaaaaaaaaaatcactgtctactgctacacctaggaaatgtagcctccactcttctcccggtagactgctagggtttccgggtcact<br>gcactttgcctattgaagagaagagaaacaaaaacactccaacaaccaattatctctccttgtttttattgtaccaaagcagacttaatctccttgcccc<br>tttttaaccttccttttcatgcagatgagagagagagagagacagagagagagagaaaggaaggaaggaaggaagggagggagggagggagggag<font color="green"><u>NNNNN<br></u></font><font color="red">ATGGGAATTTATAAAGACTTTATAAAGATGTAAGAAAATCTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCG<br>GATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCT<br>GTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>atctctccaatgtatctctcaaagacctattacaggatctttcttc<br>tatctctttgttgatattctggttttcttgtactgacatccaggatactgtccttggacccactttctcagacatttctgtaaaggaacagtcttccagc<br>tcctttgtatgagaggaaattgaagcctatgaaaggtaagtgccatgctcaaggtctagagtgagtggggcagagttaaaacaacatctgggtttcctaa<br>ctgccactccctgttctttcaattttaccagtccacatcataaagggagatcaagatgtattgttaggtttgaacctgtttcttaatttccaacatcagt<br>cttctaatagacagccatcatcttatatttttctatgaattaccttgga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	98726776	98726777	1001872	0	+	1104685642356	NA	NA	SINE	Alu	AluY	agaggtgtgcctaggcatggagctgggaaacctcctccctggccccaagttatctgcatggggaggggagtcagcctaaactcctaatgtaagagagtgg<br>agctccagatgcctggagatttgcctgagcatggagcaaagaggaccccacttcaccacagtcctgtataggaaggactggctgggtcaggctgcttatt<br>caggtgatcaggtgctccaaatgtctagtgatctgcctgggtgtagacaggagagaacccaccctacaccaggatctttttattagccagatgctgtcac<br>aggggctgtttgcccatgttctcatgcccaggattttggatgtccttcacaattctggtggattccaattttccttcttgaattaaaa<font color="green"><u>CATCTCTGTGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG<br>GAGGCGGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAACAAAACAAAACAAAAAAAAAC<br>C</font><font color="green"><u>CATCTCTGTGAG</u></font>tctttatgtactgtcttgctatttacaagtgtctgaggcatgctaaaagcttctaatctgtcatctttgaaaaaaactttatttaca<br>aaacttggtgccaacctgcaggctgcagtttgtcaactcctgatatatgctataatgttctggcagtaatccaccttggaaacctctaggagaatgagaa<br>ggaagatttttctattagtatccctctcttctctgttcccctactcacccttcaaaaggcacttgactttttcttgccatcctctagcataatcttcagt<br>aagtctagtgtttgaaaatgagatacaggagggaagttgttatgaaattttgctttggtcctataaatgtccctgaataaaagaacaagaagactaatga<br>c	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	99655399	99655400	1001873	0	-	1104685642147	NA	NA	SINE	Alu	AluYa5	atagtagggcttcatttcataaatgtttgttgaataaattaatgttaaaccaggatttttcctttactatgtatatctttttataaaagctaagtagata<br>cagcatagtgatttagtaggctctggagccagactgcctaaattagggcctgactctgactctgccactttttagcagtgtgacctttggcaagtgattt<br>aaaaaggcttcaagcgggctgggcgcaggtggctcatgcctgtaatccctgcattttgggaggccgaggcaggcagatcacaaggtcaagatcaagacca<br>tcctggccaacactgtgaaattccacctctag<font color="green"><u>GCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGCACCACCACACCCAGCTAATTTTTGTATTTTT<br></u></font><font color="red">CGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGG<br>GCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA<br>GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGCACCA<br>CCACACCCAGCTAATTTTTGTATTTTT</u></font>aggagaattgcttgaacccaggaggtggaggttgcagtgagccgagatcgtgccactgcactctagcctgggc<br>gacagtgtgagatgctgtcacaaaaaaaaaaaaaaaaaaaaaaaggcttcaagcttcagttccttcctctgcaaaataaatgagttaatcaaaggaaggc<br>atttagaatgggcttgtatatgataagtaatgaatacatgttagctaccattattactattattttctttctctaaattggagtagttttgcttggctac<br>ctcgataccatattaaatgaccaagaccaaaaatgatttcttttttgaggcttttcact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C3orf26:NM:032359:1/10	
0	chr3	106289202	106289203	1001874	0	+	1104685640516	NA	NA	SINE	Alu	AluYb8	taaagagacaatactggctagtctgtaaaaggtagactggtggaggtaaaaataaaggcaagaagatagggtgctcctaccacaggttggagagaggtaa<br>tagtgattcgatgaacagtgtttaatgtttgtgacatatctttggagataaataaggtttattcatggattatacacgaagtgtgaacaaaagtggggaa<br>acactggagactccacacagcagggtgatggtagtgatttcaacagctctgtgacagacagtggtggagatttttccttgaagcagaaatccagagttct<br>cttttgtgcatcttcagtttgagatgcccattagaaactcacatgcagatcctatatgtggaatttgacatatgaatttgtagttct<font color="green"><u>TGAACCCTTTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGAACCCTTTTTT</u></font>ctgctgaaacatatctgataatcatcagaatgcaggtaatacttaaagccag<br>aagagcctcatcttaaaaaaagagggtctataataaaaatagcaaattttattttgtggttatgatatgcctaacactcacctaaaggctttttccatgt<br>tatgtttggaggtcccaagaccacctctgggtttgatgatttgctagggctgaaataactcagtacgtaatcactttcatggctatgattcattacagga<br>aaagtatggaaagcaaaatcaacaaagggaaatggcacatggggcattttctgagggaaaccagacacagcatcctttcccagtggagtgatgtagaata<br>tgcttaaacccccagcaattagatgggataacaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	111226376	111226377	1001875	0	+	1104685639204	NA	NA	SINE	Alu	AluYb9	ggtagcagggtgcaaggatggataaattacagaaaggcatgaagacattttgcggggtaatggaattgttttatattttgaatctggtcttagtttacag<br>gtctgtacatgtcaaaactgttcaagttgtgcatttaaataggcatagtttattgtattccaattatacctctataaagttatagaaaagaaataagcaa<br>aaattataaaaggtaaacctgaaaagatccttgagagatccaaaatggatttgaacaaatggaaaaacacttcttgttttttaacaagatgattcaccat<br>cataaaaatgttaccatcaatttaatcttacatcaataacaatagttgtcttctggagctagacagttcatttaaaagtttatatgc<font color="green"><u>TGATTTTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TGATTTTATTTTT</u></font>ggaataacaaataggaaaacactaaacaaagcagtaaggcaggactagctctaccagaaattaaaatatacacaaaatc<br>ctctgtaattaaaacagatggtactcacatatgactaggcaggtggactaatgaaacagaacacaaaatccagaaatagacccaagcacatctggaaact<br>ttagtataggaatagactgaatctcaattcactcagttaaagatggactacttaataatttgtattaaaacaacagaatagtcattttggaaaagataaa<br>aattaattccatgcctcaaatcacacactaggataaaccccaaatgaatcacatctctgaagataaaataaaacaattcatatttctaatatagaatatt<br>gatcgatt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	112453506	112453507	1001876	0	+	1104685638840	NA	NA	SINE	Alu	AluYa5	ccaggtcctgggctgaacacggtgcataaactcatttaatatctaaactagtgatatttccatcttactaaagaagaagctgagccttctagccagtgag<br>tcacttgttgaaagtcacatggcacaggttgagctgtgattgaggcccacacagtagtgagcattataatacccaggcctatagtcctttggctgattgg<br>ggccagatgtagttcagatttctgaatttttaagatttgagagaagtaaacagttcatatactgtacattaaaacacccctagtgggtactctacctttt<br>aacgttcctactaggaatatgggcagcctctcatgattaaacacattaattaatatatctgtcataaaagataaaaatactcacatt<font color="green"><u>TCTTTATTATCTT<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTTTATTA<br>TCTT</u></font>tatgtcctcatattgcaggtaaacgttgttgccaaataggtctcaaaagagtttccattttcaaagttttttgagttttagaacttcacataaagg<br>attccggacctgcactgttcactaggtttagtatctctcccttcccggggtagtgccgacaatactgctgattcttactcttactttaggtttgatgagc<br>caagcttccagctccaggttttcttgagtcagggtaaaatacatttggcctctagggggagctccaggcctccagtttcactccacttcaccacttcccc<br>agaccccaatctacaccctggaaagcaaagcgctccaaccccaaagaggagctgtacaactggacatgtcaagaagtacttacattgagcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	37361602	37361603	1001877	0	+	1104685212316	CAAATTACATTTTTGTCACTAACACTT	TGCATAATTCAAGAAGAATGTCG	SINE	Alu	AluYa5  	cttggccacactttctttttaaaacatttaaaaaattttaacaatttctttcaatatttatatttctctttcattgttgatgttcagtataaccaacaca<br>ctttcattaagcagtttgtttatccatccctcccacctggcagtaggctatgattagggacaaaaaaaggaaaagatagattaattgaagcagtgactgc<br>ataattcaagaagagagtgcataattcaagaagaatgtcgaaaatctcatcagactgagtgtacccagagctcaaggctgagaaaattttggctgacttg<br>cattttacagaagaagaaataaaaatggccaagtaatttttattttaagtggaataatttcagtactaattttcagtccatacgatggcttaaaa<font color="green"><u>NNNNN<br></u></font><font color="red">CCCAGCTTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGTGATCCCGCCACTGCACTCCAGCCTGGGCGA<br>CAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>cttcctgagctaacaaaaacaaccagaaagcagattgagatttttg<br>ttgaaagattttttaaaatagcataatttgaaagtttaaaacaaaaaatattttcttcacttatgaaagccttttatataagttgccataaaaaagtgtt<br>agtgacaaaaatgtaatttgtttttgtatgaaattattatccgtaagataatatgtgtaactcaaaaatgctttccgtgtaaaaggataataaatagtat<br>tttagattttaatcttctttcttacgtgtattgttgttttcactcttagttgcatctggggccccgagaatttctagcagcagtgattcttgaaatgagt<br>taacaagttctctacccagctctgtgggggcacatggatttacagtatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	503	363	NA	intron:GOLGA4:NM:002078:12/24
0	chr3	50063040	50063041	1001878	0	-	1104685208878	NA	NA	SINE	Alu	AluYa5	gcctcctgagtagctgggattacaggcgtctgccaccacacccagctaatttttgtatttctagtagagatggggtttcaccatgttggtcaaagttcta<br>tacttaatttatcaattagtcttatatatttaaatgataaaatgaaataatgtggtcttaattactgctgtaaccctgatacctacactaggagacatat<br>atacagagcagggggaatcaatagctgttgaacaactatatgtaggcagcaatcaatgaaaacttgaacagtggggcacagtggctcacgcctatattcc<br>caacactttgggagactgaagcaggaggacggcttaaggccaggagttcccaaccagcctgggcaacatagtgacaccctgtctct<font color="green"><u>TTTTTTTTTTTTTT<br></u></font><font color="red">ACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTTTCTACTAAAAATACAAAAAAT<br>TAGCCGGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>TTTTTTTTTTTTTT</u></font>aaaaattaaagttgtatatatataaaagg<br>ttaaatttctaggtggcagacagaagatacatagaaaatccaacaagcacattcacaggtaggtatatattaacaggaataagtgcatctacctattcgc<br>caagagaaataacaattccgtggtgttttgttttcttttttgagatagagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcact<br>gcaacctctacctcctgggttcaagtgattatcctgcctcagcctcctgtgtagctgggattacaggtgcccatcaccacacctggctaatttttgtatt<br>tttagaaaagacggggtttcgccatgttagccaggctggtcttgcttctgacctcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RBM6:NM:005777:6/21	
0	chr3	51763945	51763946	1001879	0	-	1104685208505	NA	NA	SINE	Alu	AluYb8	aatcaataatctaagcttctatcttgggaaactagaaaaagaagagcacattaaatcctaagtaaatgaaaaaaaaaaaaaaaaaaaaagaacccagccc<br>cacccagcagacctagttccaggtttgccccagtggatttaggctccaggtccaaccccacagagctaggcatcaagcccacccacctgttgacccaggc<br>agcaggccagcctgacagagaaatccagcagcaagtccaattgcctgcccagcatctctggacaggctaactggtgaagggctttctctgctaaagccaa<br>tctattaagactgaaagaagtgcctgcttcttcagatgcacagaaaccaatgcaaggtcacaaagatcatgaataatcagggaaa<font color="green"><u>CTTTGGTGGTATCTT<br></u></font><font color="red">GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CTTTGGTGGTATCTT</u></font>gaacaaaataaagcaccactaaccaactctaaagaaatgaagatctgtaaaatgcctgacaaagc<br>atccaaaataatcatattaaataatcagcagcagagttgggcatggtggctcatacctgtaatcccagctacttgggaagctaaggtaggaggatctctt<br>gagtccaggaagttgaaactaatcacagcaacatagtaagaccccatctcttaaaaattttttttaattagctgggcatgatggtgtgtgcctatagtcc<br>cagctgcttaggaggctgaagagggaagattgcttcagcccaagagtttaaggctgcagtgagcttatgtagctgtgtcttaagttcattttgtttcact<br>ctgtcatctagacagagtga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	45542663	45542664	1001880	0	-	1104685210413	NA	NA	SINE	Alu	AluYa5	tctattttggaagtttcattccatataatggaatatcacgcagcagtgaaacaggaatgaaatataacttcatccgtcagcactgctgaatctcaaaaaa<br>ctgttgagtgaggaaagcaagacagaatacctgaaatataattctacctatgtaaacttcaaacacaggaaaaccagacaatatatagtttaaaaataca<br>tgcagaaacgatacatttataaagaaaagcaagaaagtgaggaattaaaaatctgggatcggtattagctaggggcgaggtggtgggcgtagaagagcga<br>tacacaattggagggggcaccttggggattctaaggtacctgaaatactctgtttcttaaactgaggagtggggcatgtatgttcatata<font color="green"><u>TGGAATTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>TGGAATTTTT</u></font>tatttaatgtgttgtaccattctttaaatacattaaatatgtaatttttatacatgatacgtttcatggggaaaagtaca<br>cacacatttttctgaacattatgaggaaagggttacaataggccaacaggaaaagaatttactgatgtttttacaatgtgattctctatttcaaatccac<br>tctatacattttttagagggatgcatcaaggtgggattcagccaagcttaggaacaagagctgacatggaaggactgggtgataagcatgacctcacatg<br>agatgctataaaacactatgggccactcctctctgcctcacaggtacaattcttaattacttaactcagttaaacagagaagcactgaaggctaggttct<br>atgcaagcat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LARS2:NM:015340:15/22	
0	chr3	28707059	28707060	1001881	0	+	1104685214322	NA	NA	SINE	Alu	AluYa5	aactgcagcccatgggccacatctggcctgtggactgtttttgtaagtaaaagcttattagaatacagccacattactttatttatgtatgtctatgact<br>gctttcagcactacagtagcagagttgagtagctgtggcagacactgtatggcctgaaaggcttaaaatatttactgtcttgccctttacaggaaaagtt<br>tactgacccctgaattgaatgagccacattcttcactttaaaaactgtgaaagattttacagctggatattactcttcccaagcctttctggttaggatt<br>tgtctttcaaagtgatcaaagaatgttggagatacaaataatctgagaagattcatctagtctggaatgtcttccattccacagat<font color="green"><u>TCTCTGGGGCTTTT<br></u></font><font color="red">CGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGGTGAAACCCCGTTTTTACTAAAAATACAAAAAAAAATTAGCCGGGGGTAGGGGCGGG<br>CGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAG<br>CCTGGGGGACAGAGGGAGATTCCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTCTGGGGCTTTT</u></font>atcacgtggcttatacaagcttccac<br>agaatattagagatagactagagtgccctttatttcctacacaggtttgtgtattggaagagtacctaaacatactgtcaccaaaacaggatcatttccc<br>tcatccctcctcaaggaccttattctgtcagttacctcgtcttttctgtatcttctattgcttcctctccactgtcctttcaaattattattaatagaat<br>actcaggacttaaatattgtaataaggacattgccatcacctatttcatctagacataatgtcatgcttcttcccttcccttcattgcccacagtggcac<br>acgactcactattttactccctcaagttccattctaaattcagctcttctaaaactgttc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	169950980	169951009	1001882	0	-	1104685600204	NA	NA	SINE	Alu	AluYa5	cacttagctctcagtaattgcgaaaccactatgttcataacattccacaatcaccagatccttgttacagtaccaaagctaaaaatgaactgcaaaataa<br>agatattacattctaaaggtataaaacaaattatgcacgtatgatgttttttccagtttaacttcagcactagcataaattattttaccactgatcctca<br>acagaatataatctgctttatcacaaagattcccaaaatggcaaatttagatatggttttagctgaatttttttaagcattttttattttgctattgagc<br>ttcagaagacaaactgctttcaatgtgcctatattctaaaatatagaatctattataaagtttttccttaggactaattgcttt<font color="green"><u>TTGGGGGTTTATTTTT<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>TTGGGGGTTTATTTTT</u></font>aagaatcacattcagtccttctgctacctcagtgtaagcttttcttctaaattaggctattcgaaaaaata<br>cttttatttgcaataaccattataataattggtttaggcaggattatccatgaatggtaagaccattgggcaaaatgttttgggggactagagtattcat<br>ataatctcaaagtatcaccccccaaattattaattataaaaaaggtcataaagcaatttccaccttttaataatgaagaagatagtgaattcaaaaataa<br>caattgtgaaatatgaatgtaacaataaagtaaaaaagcaatgttataaagccctgtcaatgtagtaaggggaaaagagaaatctctttgagttcaaggt<br>ccagtttttgctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PRKCI:NM:002740:1/18	
0	chr3	166390231	166390232	1001883	0	+	1104685600949	NA	NA	SINE	Alu	AluY	gtatttttaatggagtcggggtttaaccatgttggccaaactggtcccaaactcctgatctcaggtggtctgcctgcctcggcctcccaaagtgctggga<br>ttacagttgtgagccaccatagaggtggaggcaggagaatcacttgaacctgggaggcagaggttgcactgagctgagatcatgccactgcactccagcc<br>tgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaatgctgactctcacatcactggtgatcttcctttgctaaaccccaggtctaatgtgc<br>ttaggtattcatacaaacctactagtcatcaaataaatatggaaaacatcccacataaaatatcccttttatggagttttataacatacatt<font color="green"><u>CTGATTCT<br></u></font><font color="red">GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CTGATTCT</u></font>aatcctctaaacaaacctgtggtaaagaaatctgcttaactttgtttcgcactctctctcaaagttattttaccctagcatt<br>tttttgttttctaaataatagctcataaaactatgattctatagaacaaattctaagaaataccgcattcactagtaaatcgagaggtttaatttagggg<br>aaagaaaaatttggaacagacaatggaataatgaagactatagaagagtagtgtgatcagctaaaaaaaactcacacattcaactcttccatccttttca<br>tttctttgcaagtctcaccctgctgctgcccagcagatgtcaaaatgagcaggaaaaccacattgctatacagagattccttaatggcaagctcttgctt<br>ccctaagact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	166544604	166544605	1001884	0	-	1104685600908	NA	NA	SINE	Alu	AluYb8	gggtattgacggccaggcttctaaacccctgaaaactcccccactcttgtgccaacttggacaacactcttttatgcactcttttttagttatccccacc<br>tgcccagttcacttattaggccaaaatattttaaccaaatcatctgcttccctgactattcctggactacagccgcatctcattgctgcacttcttccca<br>acccaaagcctcctttgcgtcttcctctcctatccccccaccttaacccacaagtatgggacatctctactccttcccttgcaaccgatgacatgcccat<br>taccatcacatgtccattaccatctcattaaaacctaatcactcttacctggctcaacgccaatatcccatcccacagcatgctt<font color="green"><u>GGCTTTAATCCTTTT<br></u></font><font color="red">CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGCCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGCTTTAATCCTTTT</u></font>tgttaccacccgcctgctacagcatgggcttctaaaacctataaactctccttacaa<br>tttccccattttacctgtccaaaaaccggacaagtcttacagattagttcaggatctgcaccttatcaaccaaattgttttgcctatccaccctgtagtg<br>cccaacccgtacactcttctgtcctcaataccttcctccacaactcactattccgttctcgatcttaaagatgctttttttactattcccctgcacgcct<br>catcccagactctctttgctttcacttagactgaccctgacacccattaggttcagcaaattacctgggctgtactgccgcaagtcttcatagacagccc<br>ccattacttcagtcaagctcaaatttca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	174410751	174410752	1001885	0	-	1104685599086	NA	NA	SINE	Alu	AluYb8	atgcaacaccctatggtccacttctaccaagtaaaacatttgaaagtttgacatgaattaagaaaagtgaatgcagtaaactctccatgtcataaaacag<br>gttttcatacactcaagctgcatggactttagcattcagttctaaatgaaccaaagttaagcaataataattaaaaccaagaacatcctggtgaatagtg<br>attggatgttaactcctgatggccctaagagcagtactggaagaacagtgcctactgggtcttaatccacaagagatatcatgaacttagacttctactt<br>tgatcacagacttaaagtgatacagaggaattaattatcatttattattttactggttggtatttatattctgtatgttgaatctc<font color="green"><u>ACTCATACCTTTCT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAG</font><font color="green"><u>ACTCATACCTTTCT</u></font>tcatatgggtccctacaaatagaaccttttataccaataattttattatcaagttgagttcaggaacaaaatgaagt<br>aaaatatgaaaacttgtttaaaagagacaataatgattgcagtattttacaaagcatttttacatatatacttcctcctaacaagcatatgaaatataaa<br>caacacatagccaagtttgttattggtttcttatgtgtcaggatatacttcatctattttaaagatgtaaattctgaaacatgaatgggcttagtaattt<br>gtcctagtatagaggtttccgaacattcttttttggtggtacccttagtatctcagaaatatatccatagtggccctaagccaaaagacttaaaatacag<br>cttccagaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	137565397	137565398	1001886	0	-	1104685607795	NA	NA	SINE	Alu	AluYb9	atacattgattgatagtgtgcagggtgaaagctgggcctgcagggccttggccattggatgccagggcttgtgaggaaggagaagctgcttgacatgaca<br>gtgggaacgaatctggatgccagtctccccagaactatgagctgaaggggtggtgacaaaggagggcagaaatactcagtccagggtgggagtcagaaaa<br>gacttatagtggaggcaacacctggatgttcattagctgggccagctagcaggaaaatcttccaggtagaggaaatagaattttgacaagtaaaggtctg<br>gctaaataaaatgtgaagtgttgtcatataatggaattccacagaataatgaaaagcaaacctctaaatctacatgtatcaacatagat<font color="green"><u>GCATTTTTTTT<br></u></font><font color="red">CGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCT<br>CTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAG<br>CGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GCAT<br>TTTTTTT</u></font>tgtgttaaaggcaagttgcagaattgtatatgtttatatgtaattatatgtgtatatagacatagatctaaacccagaaaaaaacacagcaaa<br>ctcatcagagtggttatctctgtctggagagcagagaagagcttgagggtggagatgaaggggtcttaagttttatatgtagtgttccagtttctcaaaa<br>ggtgaaaaggtaaattattgacacattatttaaggaatgaaaaaatgcataaaacaaggagaaaattggtcagtgccacagacagagagagatggaatct<br>atggaacacgaggtggaagagagcacttccagctggaggagtggaggaaaattcctgaaggaggcagcctctgattgaaagatgggccagacctgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	144687885	144687886	1001887	0	-	1104685606127	NA	NA	SINE	Alu	AluY	tgtttatgctgtctccatagttatgcattataatctatattaatggttatctacaaatttatgtgttatatatatgtgtatgtatataacataagtttcc<br>attagatcttttagaacattgaaaatactgaaatctttgttcagataatttcaaggttacatgcatgtgtttggatgagagagacactgagagatggcga<br>ggacttggcagaactggaaccactatgtaaaccatcatgcatattttacacctctgaaggctatgactgagaagcaagtggcaaacccagccaaggctgc<br>ataactcaggcctgagagaatatcaacagaaggctacaaaatgccttgatccatctatggctcatcctcatgtttaattgttga<font color="green"><u>TGGTTTGTAATTTATT<br></u></font><font color="red">ATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACA<br>AAATATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGA<br>GCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAATAAATAAATAAATAAATAAATAAATAAA<br>TA</font><font color="green"><u>TGGTTTGTAATTTATT</u></font>atggcaaaatgtcaaaaaagaccatataaataactttcaagaaacatattaatgggctgtccagtgtgtgaggcagatggct<br>caccaatatattcagttcaataaaaaatggtttttacattgttgtcttagtcacagagaaatcatgtaatatgcccatagtcacttagtaagttataaaa<br>caaaaaacattacaatttgaacccaagtgtttgacctccagagatgatctgtgcttagtctctcttctgaaatacacattgggattttttattccaagca<br>cagtggttttatgtatgcacattatgagctgggatagaactaggtagatatgcagacagaaggccaacaaatatcagttcctaggagaaatgtctgtgtt<br>ac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	151748851	151748852	1001888	0	+	1104685604346	NA	NA	SINE	Alu	AluY	aatataaagtgagtcacaaatagaattttaaatttcctactagcctaattaagaaaaaaagtaaatataaataggtaaaaatatgttttcaaatataatt<br>tatttgcccaatatatccaaaatatattttcattgatttcaacctgcaatcactataacattttttgaatgaaatatacacattattttttatcatacta<br>ttttctaaatccagtgtgtattttacacttacacctcatctcaattcagactagtcatatcccgagtgctcagtgtcccctgtgggtagtggcgagagta<br>ttagacagtgcagttcaacattgctactcttccacttacctacacaacctctaaaaagaaatgattaaataattataaacatt<font color="green"><u>CATGTTAAGCTATTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAGCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGAAAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>CATGTTAAGCTATTCTT</u></font>taaatacaaataagctgatggccagtttttatattagatcaccagggtgtagtattaatagttaagcgtgtactcat<br>taattacacgaccttgggcatattgcttaacctccttgtgcttcagtttcctcatctacaatataatagaaatagaatattacctacttcttagggttgt<br>tggaggattaagtaaatcaatatgcttaaagcacatacagtaatgctgggaaaggcaagttctgttggaggattatgtaaatcaatatgtttaaagcacg<br>tagaacaatctcgagagaggaaagtgctctgtaattgatggcagttattattagtagtagtattacttctatagaacagtgattctcaaaatatgtttta<br>aaatac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	156239882	156239883	1001889	0	-	1104685603246	NA	NA	SINE	Alu	AluYa5	aaaaagaagagtggcctggagcatctctccagagatgacatttggtgccagtggtgatgaggtgggcattgtgaacaatggacactgccttggggccggg<br>gcagacttcctgggccagagtgctgtctatgtcagagagtccctgaacttacttttggtgtcctcagtgggaaaaacatcaccaatcctcactaaagttt<br>cataacatctttcagaggaccaatatctctgaatgttattcaaaccgactaacaaagattgaaaactaatagccaactgctttttgaacaattgcttctt<br>attagtattagaatttctgagtttcagtatataccatgcatgtaaagagtggttggtttatcaatcaatcttttgtaacttttccgttttt<font color="green"><u>ACAAGATTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>ACAAGATTT</u></font>atgcagtgcattctctttcttaggattgggttacaagttctatttatgtgtgtgtgtatatgtgtatgtgtgtgacacacacatacacac<br>cattttcagagacagacttccaaaagttaaaaaaaattaaaaagaaaaaagcaattatttattgagtccctatccatgttcaacaccataaatctcattg<br>ttgctttaacctatggaaatacaagcagattagggtttttaaaaagtagatgcatagtttttatactgctttcctcataccaaaggaaacaaaagtgtgt<br>tggaaataaacagctttaactgctttacaaatgagaaaatgttagcagagataggagatgaggcttaattaaaatgttaattaaatatggaagcaaacaa<br>g	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KCNAB1:NM:172159:11/14	
0	chr3	132577724	132577725	1001890	0	-	1104685608995	NA	NA	SINE	Alu	AluY	aaacttatttctcctatctaatcagtatttgaagtgatgtatgttaattagcttgatgtaattattccatattgtattcataagtcataacttcactttg<br>tgccccataaacatgtacaacaataatttatgaatttacagttagaaaaagaacactttttaaaagatttccttggatgacatttgacagttgttttgta<br>ctcataagatgttatcgtttttttgccctatatctttactcaccatcattatcatactgattagagagaaaaatgtgtttttttggtcagtggaaggtga<br>tttattagcaaatttagaagcatgtagcagcacgacaggtagatctttgcactgttaccccctagacccagggcttacatgccatataagaagag<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCCAGACTCCGTTTCAAAGAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAGAAGAGCATATG</font><font color="green"><u>NNNNN</u></font>cagaagtaatgtgtaggatcactgaaattaacccctcagggaaaggcaagaacgctatgtgcctcatagc<br>ccataatttgccaaaagacaggacttaggtaagtacatatttatgataacatcaaggttgtcttggcttacacaagcaacagtaaataaagtcaaaatct<br>tagagacattcctgggcctggggttagtcagaagtcaacatggcagattagcatccaacatgaagtggcattatcctgtgtagtgtccagtgatgtacat<br>ttgtttagaagggagtaaatgagattgagcactgggagcaatagtagaaggacacccaatagcccaaagttggaaggagcacaagtgttcattgatggaa<br>gaatggataaacagaatgtggtcta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NCRNA00119:NR:002811:9/11	
0	chr3	127015547	127015548	1001891	0	-	1104685154840	NA	NA	SINE	Alu	AluYb8	tagaacctccctcatgtttgtctcctaacctctctttcatatattccatctctgtgtctatccatttgcactacgtttgaattctttacctttaagctat<br>gtcatattaatttaatttaatttaaatatttttaaggcagggtcttgttgttacccaggctggagtgcaatggcgcaatcatagctcactgcagcctcga<br>acttctgggctcaagcctctcatgttgctgagactacaggcatgtgccaccatgtccaactaattttttttattcttttaaatttttaaaatagagatgg<br>gatctcactatgtttcccaagctagtctcacacttctggactcaaatgattctcccaccttggccttccaaagtgctaggccactt<font color="green"><u>AAAATTTAAATTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTAAATTTT</u></font>atgtttatatttacttcaagaagttgtatttgcttcatttcaaaatctacatgttttgtttgttttcatat<br>tttcctgttcatgcttatgcattttattccttattttatcttgttaataattttaagcatattggctttatacttgttatttaaatttcttgatatgcta<br>atccttctcttcctttttttagcctactcttccactcagagactcacttcgttatcgttcatatgggagtccttatcttctggagatgtgtattgaaata<br>tttattattgaaatggcatgatgcctagggtttgcttccaaggatcgggtgttgagggagtgggtggggtatagataaagcaatattgggtctgggattt<br>gtagtttttacttat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	129938432	129938433	1001892	0	+	1104685609526	NA	NA	SINE	Alu	AluY	tactccaaaggtgcacaattagtgatgtggattgaattcctgataggtgaaacagggagagtcagaagacatggctctttattgaggtttaatttctaac<br>ttgaagtttatggatcagactttggagaaggtgggagataccatactttcttaacactggagagccttcagtttcagctaaatttagttaaattcaataa<br>acacctgtcaagtgtttattgtccctacatgtgggacatttgctagatacaaaaaagggttccaagatacataagccatggctctgaccaacaaagagct<br>tattgagtgtgcaggagatacaactggtacaggaaaaactataatatgagataggataagctacaggatgtaacaatgctgcaaat<font color="green"><u>CCCATTCATTCTTT<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTTTACTAAAAATACAAAAAATTACCCGGGGGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>CCCATTCATTCTTT</u></font>gcacagtgacttggagaggaaacgaaaatagattcccttttcttcacttgatcaatcatcaaaatttattgagcatct<br>attgcaatcaaggcatgattctagaatggggaacaaaagagacatgggctctatctcttaggattggcctctatggaaaaagatagacatgaatgaaata<br>atcacagaaatagatataatattactgcagagataaaggtatggaaaggaatacgacaggggatttgacccagcctgtgtagtcagaaaggcttcattga<br>ggaggagatgggatgaaatttaaaagataggtaacaattaaggaagagagaggggggcaagagaacaacttctatatgagcaggtgctgaagggtggaga<br>ggactccg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:COL6A4P2:NR:027898:4/23	
0	chr4	54415654	54415655	1001893	0	+	1104685020781	NA	NA	SINE	Alu	AluYb8	gatgaaataatatgtgcaaacccccatgacatgtatttacctatgtaacaaaccttgacatgtaccccccaaatctaaaataaaagtaaaaaaaataagt<br>tctccccttaaagcttctgggcaacaaggtcataaaagacactcatcttgggtaaaattgtagttacattcatagacttcaatgctcaatgttttggacc<br>tttgctttcttacatttctttcaacttggacagtaaattaaaaccattgttctatttttctctttttcagttactagcccagtatttggaatttgccaaa<br>gctatattcctcagaatttacttcaagagctcctttgtatcggcggagaatgaagaacggagaagaggaggaggaggttgaaagaaact<font color="green"><u>AAGAGATGTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGATGTGG</u></font>caactaattgcaacgtgtagattgtatttagctcatgattcacacaaactagatatttgttattaaagaattatggtt<br>gtttttggtgtgatattagtattgtgctcacatttcttaagaatctatctttagagataggtgctgaaattcttgcagatgaaatgacattatcatctga<br>gatgtgcttcaaaaacagttaaaggagatatcgataagatggccttgaattcacaattgctgaagatgggtataggccacatggagttttattataatct<br>tttctctccttttatattgtttgtagttttccattataagttaaaatgaagaaaataagtcaaccaacatgaagcggtcagtgagattcttacggacatc<br>ccagctttgcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	65216746	65216747	1001894	0	+	1104685185727	NA	NA	SINE	Alu	AluY	gtggagccatatccaattaattgaaagcctcacttgataaagactgatctcctttgaagaagaagaaaatttgccagcggactgccttttaactcgaaca<br>gcaatttttccctgagtctccagtctgcccgcctatcccatcaggacgtgccaagcctccacaatcacatgagccaccctccacattcttttggttctgt<br>ttctctagaaactccaactaatttaataaatatggtaatatagtcaagttgtgtgaaaagttttatagaaatcagtgattttaattaatcagtttcaata<br>gttaaccttttaagctgataatttatgtaagtacccccaagtaaaatatgggttatggtggataacaccaaaggaggaactggagatcattataa<font color="green"><u>NNNNN<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>agc<br>cagacacagaggatgactttcacggttctcactcatatttagaaactaaaaaagttgatctcatgcaagtagagagtagaaagataccagaggttgagaa<br>gggtgattggatgggaaaggggcatgaagagagattggttaatggatatgaatatacaattagacatcaggtataagttctaatgtttgattgcagaata<br>gagtgactgtagtcaaaaactgtgtgttgtatatttcaaagtagctagaaaagggaacttttttttttggcagagtctcactttgtcactgagtctggtg<br>tgcagtggcatgaggatggctcacttcagccttgagctcaagcaatcctcctgtctcagcctctgaagtagctgggaaggagacacatacca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TECRL:NM:001010874:2/12	
0	chr4	66738382	66738383	1001895	0	+	1104685186247	NA	NA	SINE	Alu	AluYa5	cagtgagctgagattgtgccactgcattgcagcctgggggacagagtgaaaccctgtctcaaaataataataataataatggcattcaagaactaagtaa<br>aaataaagtgattcttaccactcgggccccactaccatagagaaaccccagcacataggaaaaatgagaatgctaagaatatttattgacaaaaaaaagt<br>tcatcacaataagaaagtatcaactgaaatatatgtaaaaaaataagtacataaatagtggcacatttatatgatggattatataaagttctcaaagtga<br>acaggtagatataacataaaggagtgaatctcaaaaacaaaatatagaaccaaaataagaaagactacatgttcacaaaatgtgataa<font color="green"><u>AAGAAACATGTC<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACATGTC</u></font>aaataacactatgtttttcctatagatgtgtatacagataaaaaattagaaattctcaccgtattccaca<br>tattccagatagtgtttatcatgtctggggtatgttacaaagaaaaatggcaatggaaacaacccatagagtttcaaatctacctaaaatatttttagtt<br>ctttaaatatatctgaagcaaatatggcgaattattaatactttatgaagatgtacaatatttaaaattttaagtttatatactttatattaaattatag<br>tttatttctacataattatatttggacaactttattcacttttaaaattgattaaataagataactaaaaattatctgtatggacaatagccacaaatag<br>agcatatactccatgaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	67963892	67963893	1001896	0	-	1104685186534	NA	NA	SINE	Alu	AluY	aatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagatt<br>ctggatattagccctttgtcagatgagtaggttgcgaaaagtttctcccattttgcaggttgcctgttcactctgatggtagtttttttgctgtgcagaa<br>gctctttagtttaattagattccatttgtcaattttgtcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgacctga<br>atggtattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccatctcgaattaatttttgt<font color="green"><u>AAAAGTTGTAAGGA<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGC<br>CTGCAGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTT<br>GTAAGGA</u></font>gggatccagtttcagctttctacatatggctagccagttttcccagcaccatttatgaaatagggaatcctttccccattgcttgtttttgtc<br>aggtttgtcgaagatcagatagttgtagatatgcggcattatttctgagggctctgttctgttccattggtacataacgaaatgaaggcagaaataaaga<br>tgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgccca<br>caagagaaagcaggaaggatccaaaattgacactctaatgtcacaattaaaagaactagaaaagcaagagcaaacacattcaaaagctagcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	61825109	61825110	1001897	0	+	1104685184761	NA	NA	SINE	Alu	AluYb8	gaaggaacacttttaataagatgtgtctctctttgggctacaaaacaggatgataattggtagatatgagtttaattcatgaattttaaaagcccaatat<br>ttgtattgggcttttaaataaccagtcgtttaacctggattactgtggacaagttacttaagctttcagtacctccatttcccatgagtaaaatgagaat<br>agtaatggtatctgtctactaagactatattcacaactaaataaggtcatctatataaagccttaacaatggtatctggaatagagcaaatggaaaatct<br>tactattatcattagtaagattagaatttatatgatggagccagtggtgcaatggacagcacgtctgactatggaacagaagatta<font color="green"><u>AAAATTTATATATC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTATATATC</u></font>tacccatatcatattattagtaatattgttatatattgaggtatgtaaaaggtacagtttcctcatgaatg<br>ttagtttaataaaagaaagagacaaaacttctcttgacttccttctcaatctggcagaacctcacctatacagaaattatcgctgacatctataggccca<br>atggtactaaagggcaaggagaaggctacactaaattgtgtcatctatgtctactgtatcttgctcctgttcattcttagaacgctggctaaatagatca<br>aacagtaatagctgatcagtgggttgccccttctcaccattccatactccaccagatacataaactttcaaccatatcattttaaagatatgtggtttat<br>ttccttagtttgtaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	35720861	35720862	1001898	0	-	1104685759521	NA	NA	SINE	Alu	AluYa5	tatgtatataccaaattttctgtatcagttcatctgttgatgaacatttagattgacttcatatctttgctattgtaaataatgctgcaatagtccaggc<br>ccagtggctcatgcctataatcccagcattctcgggggcctaggcgaacagacagctttgagctcaggagtttgagaccagcctaggcgaaatggtgaaa<br>ccctgtctctacaaaaatacaaaaattagccaggcattggtggctcgtacctgtagtctcagctattcaggaggctgagaatcccctcgagcccaggaaa<br>gtggaag<font color="green"><u>TTGCAGTGTGCTGAAATCGCACCACTGCATTCCAGCCTGGGCAACAGTGTGAGGCCCTGTCTCAAAAAAATAAAAAATAAATAAAAATAATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTCGGGAGGCTGATGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCT</font><font color="green"><u>TTGCAGTGTGCTGAAATCGCACCACTGCATTCCAGCCTGGGCAACAGTGTGAGGCCCTGTCTCAAAAAAATAAAAAATAAA<br>TAAAAATAATGC</u></font>atgaacatgggaatacatatatctctttgatataatgatttgttttcctttggataattatccagtagtgggattgttggatcatatg<br>gtagttcaatttttagttttttgagaaatcttgctgttttccgtggtgactgtgctaataatttacgtggccgccaacagtgtttgagttttgtcttctc<br>catatcctcacatacgtctgttattttttgtctttttaattgtagccattctaaatggggtaagatgatattgtggttttgatttgcctttgcttgatga<br>ttagtgatgctgagcattt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	36325205	36325206	1001899	0	-	1104685759676	NA	NA	SINE	Alu	AluYb8	aggaaagtggaactgcagacatgaggataacatgtaagggagacgcatggagtgccagagttctcccttctccatccatccttctcattggaaagagtga<br>gaagattttggaaacttttagaggttaaaaaattaacataacatttctacttaccaagaacctagtggctttcttctgtaattgataggggaagggacat<br>gatgcaccaaacatgttactggaattaactctagtatagaaagcatgacactaagttatggaaaacttaacaatcacaatgtgggcactgttccctcaaa<br>aaccacagcaagaacaaagcaaaacaaaacaaaatcctgatttttcttataggaatttcttctaatgtgctctttcaatctgctttt<font color="green"><u>TAAAATACCTAGC<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGC<br>AGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAT</font><font color="green"><u>TAAAATACCTAGC</u></font>ataacataataagttccatttgatccttcaaccctaatataattttgtaaaattactgcaactgagaagtctgagtaga<br>attaaaatgcttttggatgtaaacattttttaatggttcagaatcatctcatttatctagtcaaaattgctttggtatttcatattggtggaaaaaataa<br>tataggaacaacattatccctagcagagcagtgagatggtaatgaaatccaaagtggtgaaagtggcgattctgacgaactgattcttgcactgccatct<br>gcctgcttcctccctttgacacagcaagttatttaatgtggtgagaaagaaagtgttgaagcagtatcattatttactagaaatcacatgtcaggagttc<br>agtttaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DTHD1:NM:001136536:7/9	
0	chr4	12239295	12239296	1001900	0	+	1104685313240	NA	NA	SINE	Alu	AluYb9	aattcgccctccccaacacttccaagttttctactattatggaatcagatggaagtttaagatttcattatcaaaaccaggtccatgttcagatgaagcc<br>ccttttgtacgacaactctagtgcagtttctatcaatttaaaaatctgtaaactaaagagacaggagactatatacctcccaactctctctctctctctc<br>tctctctctctctcacacacacacacacacacacacacacacacacacacaattcaatagtgggacaggcacgtgacaaccactgtagtcattttcattc<br>aaaggcacacaaaatagaagacaccagataataacaatttctaaaatgcaagcaagcacacatcatcagttcttgattagaattccatgctactc<font color="green"><u>NNNNN<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCG<br>CTTCCCGGGTTCACGCCATTCTCCTGCGCTACTCCTTTTT</font><font color="green"><u>NNNNN</u></font>ttacccttgactcttggctctgcactctgtggtcgtgccccaaccttccaaatca<br>atcagttttctacatttttagataggatgcatgtttgtaactaagtgtccctctcagccaactttctgcctattaaaatctggtttctcaaaagtctatt<br>ttctctttatactatctgttcctttcagtccttttctcttaaaaactttctagagccaggtgtggcagctcatgcctgtaatctcactactttgggaggt<br>caaggcagaaggatcacttaaagcctagcttgggcaacataatgagatggagatcatgtctccacaatatatatatatatatatatatatatatatatat<br>atatatatatatatatatatatatgtgtgtgtgtgtgtgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	1301833	1301834	1001901	0	+	1104685132462	NA	NA	SINE	Alu	AluY	cccagagaccctgggaagctggtgcgtggctcagtccaaagccaaaggcctgagaaccctggggggatgctggtgtaagtcccaacatccaaaggccaga<br>gaccctggagttctgatgccaaagggcaggatcccagctccaggagggacaggaaattgcttatcctctgactttcttgttctgtctgggccccagcgga<br>ctggatggcaccacctacctggaggacatcttcccactcacccaccagtctcctctggaaacacccgcacaggcacacccagaagtaatgcttcacaggt<br>tctctaggtatcccaaatcccatcaagttgatgcctgaaatgaaccattacctgtgcagatacggtcatgtgtcacttacatg<font color="green"><u>AAAAACTCTCAGAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAACTCTCAGAAATG</u></font>catcgttaggcgactttgcggtgtgaacatcgtggaatgaactaacaggagccagatggtgtggctgctgcacgcccgca<br>ccgtggtacagcctgtggctcctgggctgcaaacctgtacagcatgtcactgcactgaatactgcaggcagctgttccacggtggtgttttgcatggaac<br>acatcgaaacatagaaaaggtgcagtgagaatgcagtatcctaatcttaatgggaccactatcacctgcacggtctgttgttgaccaaaatgtcgttatg<br>tggtgtgtgactgccacgttttctttcttcattcccctggtgatggacatgtgggtggcttctgcctcgtggctgccatgaacacaggtgtgcagatacc<br>tcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MAEA:NM:001017405:1/9	
0	chr4	10722293	10722294	1001902	0	+	1104685312839	NA	NA	SINE	Alu	AluY	aaaagatcaataaaatttacaagtttctctgaaaaggctgacaaaaaacgaacacaaattaccatgactaggaatgaaagattactaggaacatcactac<br>aaattatttaaagacttctcaaaacccgatgaaaaaaattaaattagaaagtaggctagagatacgaacagatatttcggaagaagatacgcagatgaca<br>aatgagcgcatgaaatgttcaacatcattaggtattaagataatgaaaattaaaaaactgcaatgagttatccctacatacctattagaatgactttaaa<br>aacctccgcaaaacgtgtaccatttactttctactgtactatgaaaacgtaatgaggtacagaaaaaccacaagagagat<font color="green"><u>AAAATAAAGAACTGAACAAA<br></u></font><font color="red">ACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAGGCGGAGCTTGCAGTGAGCCGAAATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAATAAAGAACTGAACAAA</u></font>aatgcatacaaaaaaaaatagtgacaccaccaaatgctgacaaggatatgttgaaaatggatcacacataca<br>ttgctgatgggaatgtaaaattgtacggggacgctggaaaacagcttgacagtttcttaaaaaaataacaactaacaattgcactcctgggcatttatcc<br>cagagaaatgaaagcttatgttcacacaaaaattggtacacaaattaattataatattaaaaactggaaacaatgcaagtgtccttcagtggctgaatga<br>ttaaataaactggtacatttgtatcatcacatactactaaacaatacaaaggaatgaattgttaatacatacacaacttgggggactttccagagaatta<br>tgttgagt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	148053950	148053951	1001903	0	+	1104685730743	NA	NA	SINE	Alu	AluYa5	gaggatgcagctgaatactggtgaataccctttgcattgtcctctgcttcccaggcctcagaaacatgactttctttcttttccctaggagaagggagat<br>gggagaatgaagaaatagagacttactatggcttaactcattgcattcatctctgatttaaaagcttggagtcagccaagatgctgaatcctgaacatac<br>ctgccctcataatggacttatgatatcctctaagggtactttgttttctaggactcaattttactatctgtaaggtaagcagataagattaaacaggtgt<br>tttttcatctgtgctctgagaaactttaaggactcagataatttgcctaaggagagggacttggttttatgtcgcttgcatttggtctta<font color="green"><u>GAGTAAAGCT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATAGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAGTAAAGCT</u></font>tccatttaataggacaaatacacatttaaaaatgcagtgtttgaaaaccactggctagatgat<br>ctaagtgatctgtaatgaggcctctccagctctgacactttgtaattacaaaatttcttcaacttgcatgtacttttcaataccattctcacaaagcaaa<br>atgcacagacatttaactccagttttaccgaaaatatgagtcaacatgaaaattctgggaaggctgagtatgaaaaggtataaatggctttgatttcttt<br>tcttccaaatgaagctttcttttttcagattttttaagagatgacaggcaaagagtatgagtctgggaaagtagcttacactagaaaaaaggagacctca<br>tgtctattcactgtcaaacacgtactc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	125977764	125977765	1001904	0	+	1104685448566	NA	NA	SINE	Alu	AluY	atgaaagacactaaactggttgagatgttctcattatacattagaggtcaattatttctctgagaagaaaggcatatatcattatgtatgtaaaatatat<br>aataaggaaatatatattgagattaggaaaatgtataatatattgagaagttggataagaaagtagaaatgaagcatgttgtcctcaaaatgaagctcag<br>caattgtattacactaaacactattaatgactaagtctgtacatagtgaaagcaattcaattctattttctttttctgaaacagttataattcctctatt<br>gtacctccatgttacttatcagcataataaactttctcaaagtaaaacattttcagaaaaaatatgagtaatatatatgagctt<font color="green"><u>AAAAATGTCAAATGAG<br></u></font><font color="red">GGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACA<br>CGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAATGTCAAATGAG</u></font>cctttctgttatggccaattaacttgtatattcctttttttccccctcaaaaaagagattccacttgaactaaggaa<br>aaattttcaggatatgagacacaactacacatttgaatatttttttcttgtataagaaattgactttacaaagctataaactactctgagtttatgggct<br>tttggaaataatgacctccattagagtttgtaatgcattctgggcaatatcataaaaaatatgtcagtagagtaatttcatcctcaaaatgatcatcttc<br>tgtgagtaataaattgcgtgcatatattcataaaagactctctgtggaatattccaaattcatatgcacataccttcactttgaaattttacaagaaatg<br>aatgaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	137806524	137806525	1001905	0	+	1104685451403	NA	NA	SINE	Alu	AluYa5/8	gaaaatacagaaaaaaatcaatctgtatatgtatctctctctctatctaatctacctcatctatctacctacccattctctaaaagccatgctataagcc<br>agagaaattaactgttaaagttttgctatatttcattcatatatttttatttaaaaaataattggaagcatattaatacaatatcctgcaagcttctttc<br>tttcctaacaataaatcctatatacgctcccaaaaacattaaatatccttaggaaacatgattttttaatgaatagaaagtttccattaaataagcatac<br>tggacttattgaatcaaattttattaataaatatagattattttcaccttttacttactagaattaaaaaaatatatatttacattatcta<font color="green"><u>AAAAATGAT<br></u></font><font color="red">TGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCG<br>TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGAT</u></font>aaagtagtacctaaaagttttacaaacactgcaagctgaagttttacaaaatat<br>tattttaaaatgtctataatattaaataatgaaataaatgcaaattaataagcagtacagtttttttgtgtgaaccagaattttttattgatttccattc<br>aattttacaattgtaaacataaatatgtattataaagtgcctttatataatactttaatgaagttactgtacatcattttgtccacttacacaggataat<br>ttgttggactcttttttatcaattagagatgttaacatttggaatgaaatatatagtttgtgtatctttttctcagctgataatattaatttaaatttaa<br>tttagttttaacacaattctcattgaacctaacatca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	133117841	133117842	1001906	0	+	1104685450275	NA	NA	SINE	Alu	AluYg6	ttctagccctttcaattttttaaaatattatatattctgccaagagataaatcagaataaaattaagtattgactatgccaacttctttctttcaaaatt<br>ttactggctttccaccaaactacaaaacaattattttgacatacatttcagacactctgcagtctaattatatattcagccttattaccccttttttatc<br>tagatgacttattggttctagccatatttaaaagtagttgagctatttgttggttgattaagttgttggttgcataccaatagaattagaataattccct<br>caaaatgtcaatattttatcctttattacaaaagagttggctacataataaaattcttattaattaaaagtcaattccaaaggcatg<font color="green"><u>AAAACATAAGGAA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTATAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAACATAAGGAA</u></font>agtgcattaaaaccaactggcttctattcaggtaaagtatttattataattttgacacaatttaagcaatattggaacta<br>tcagttgtatactttgcaaatatcaagttaattacatagcatgcaatataatgtaatattagattttctgcttataataatccatatataaaaaacatac<br>aaaacagcaataaatcaaagataattaatcctctaatacctatcaagtggtttaagatatgttcattaaattaatgtattttggaagaatgcataagaaa<br>aaaagttatgaaaatcatagcatatgctaaaattaacaaaagtaagttgggggaaaaatctctaacaacaaaatgtaaacactagaattgataatcagtt<br>gcttgaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	139225215	139225216	1001907	0	-	1104685451729	NA	NA	SINE	Alu	AluY	gtgacatatatggaatataagccttatttttacaagcattcacatagtcactatttacatagtcacagagacatagaatgtggtcatattttacataagc<br>ttgagataatgtgacatagcacgttagtaaaaatctcactttatgggcatgaactaatgctttaaaataaatctaagcttttttcccccgaatttttaag<br>aattgcattatgtgagagccatggaatcagtctgaaggaattataaaacaagtcgttgctcttgtcacaggataatgctgccttgtcctttacacagacc<br>cccagaccgttagtgacacatctccgaatgatttgcttaactcttgtccttttttttttttttaacatatactgttatcttt<font color="green"><u>AAGAGTTTTTAAACATCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTTTTTAAACATCT</u></font>atagcaatgtcatacaagtatttactgggaaataaagcatatgctaatactaaaaa<br>acactcgactctcaggaatgttggaaaggaagttaggtgtagtatacagtatgcagaagtcagccataggtagccttttaagatggcctccaatgatcac<br>ctccgccttctggtatttatagccttgtgtaatctccttcccttgagtgtgagctggagctagcaactcacttctatcaatagactatggcaaatgggat<br>gggatgtcgcctctgatattaatttacaagagattgacttcagccttgttggcatattccatctctctctctctcttcagcactttttgcttgtgtgttt<br>tggtaagatgagttgctacgttatgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	144420854	144420855	1001908	0	-	1104685729963	NA	NA	SINE	Alu	AluYa5	tgccacataattagaaagaatatgaagtaaaagctgtgtttccaggttttggtgagagaaaaattcaagcaccagaatgagaagggtaaaaatacaggct<br>cagaagagaaattgctgaaaaccaagcacattcacaagggcttatcaactctgttccaatgcagagtgaagaggggacccaggaacctgattgcaccctg<br>ggaaatgtgaagctctttgtgaaatgactattaaaatggcctgaagaggttgggtgtggtggctcaagcctgtaatcccaggactttgacaggccgagga<br>gagtggatcccttgagtccaggagttctagactagcctgcgcaacatagggagatccccatctctacaacaacaacaacaaaaatt<font color="green"><u>AAAAATTAACTGGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAAAAATACAAAAAAACTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATTAACTGGG</u></font>atggtggcgtgcacctttagtaccagctttttgggaggttgaggctggaggattgcttgagcccaggagttcaacgttgcagtga<br>gctatgatccccagtgcactccagcctgggtgacggagcaagacactgtctcaagaaagaaagagagagagaaagagaagggaagaggagaaggagagaa<br>gaaaaggaaaattaattgtaagggtattggggcctaactaaatgtagtgtaaatattaaattgcaactgaaatatcccataatgagtatgtatggttaat<br>gtatcttatgttagtccttatgtaaactaagcagcgttccaaaaatagactcaccaaatttgttctacttaatttttttgaaaagtctttgatagctctt<br>a	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	134488146	134488147	1001909	0	-	1104685450650	NA	NA	SINE	Alu	AluYa5	aaaattttatgctttttttgtgatgtttatgtgtcctttgtttactgtctttgtgctttacagtccataaaagtaatcaatctttattctgtcactcagt<br>taatgtttcttaagttaacatttatatcagaacagttttagattcacaaaaatattacaaagatgctacaagacagttcccatataccacacacccagtt<br>caccctatttattaacatcttacattaatattgacatttgttagaattaatgaaccaatattaactcattgttattaatccaagtcttaatttatttaga<br>ttttcccagtttttaacaaaagttatttttctatctcagcatcccattcagatcactacgttatattcaattgtcatgtctcctt<font color="green"><u>AAGATATTCTTTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAT<br>ATTCTTTGCC</u></font>tgatagtttctaagtctggccttgtttctgatggccttgacagttttgcagagtatttgtcatttgttttgtagaatttcccttaattgt<br>tttttgtccaatgttcctcataagattaaactggggttatgtggttttaggggaaagactacagaggtaaagtgtcatttttatcacatgatattaaggg<br>tatatactataaatctgatttatctccattgatgttgaccttgatcacctagctgatgtagtgttgactcccattactcttttaaacataaagaaaagta<br>ggtgccaattgcataaacttaccttaagtacgcaaataaaaactaaatgtcaagataatttgaaggtacaatgattttttcaaatggtatattat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	86584502	86584503	1001910	0	+	1104685669338	NA	NA	SINE	Alu	AluYh9	cgtgatgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattct<br>ctaaagaaagtcattggtagcttgatggggatggcattgaatctataaattacctcgggcagtgtggccattttcacgatattgattcttcctacccatg<br>agcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacgtcccttgtaagttg<br>gactcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtttgttattggtgta<font color="green"><u>AAGAATGCTTGTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCG<br>GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAATGCTTGTG</u></font>atttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattgtgggctgagacaa<br>tggggtttcctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcatttcctaattgaatacccttgatttccttctcctgcctaat<br>tgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgc<br>acattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatatgtcccatcaatatctaatttattgagagtttttagcatga<br>agggttgtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ARHGAP24:NM:001025616:2/10	
0	chr4	109922000	109922001	1001911	0	+	1104685674262	NA	NA	SINE	Alu	AluY	gtaaagtgttatataaaaagtgccagacttggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggaggatcacctgaggtcaggagttt<br>gagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatgatggcacaaacctgtaatcccagctactcaggag<br>gctgaggcaggagaataattttaaccccggaggcaaaggttgcagtgagctgatattgtgccactgcactccagcctgggcaacagagtgagactctgtc<br>aaaaaaaaaaaaaaaaaaaaaaaaaactatacacataacactttgtcaggattcagaaaaagggagaaattacacttagttaagggagag<font color="green"><u>AAAGACTTCT<br></u></font><font color="red">TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGACTTCT</u></font>taatagaagaagcagcattcaaatacaaaggggtatcctatttggatgtgtggaaactgagtgtgtctaaggattcggaggaaaggc<br>tactggaagaaaaggcaaaaagaaaaagaagatttgaagagaaaagaagtaaatggtttgatttggtttggtgaagcatagtctagaaagggcattaatg<br>aaaaattaatggtagattaggctagaaaacaggccagataagaggatctgaatgtcaagcaagaatctagattctattgtattctaaatgaaaaccatta<br>agactcaaggttttgaggtcagaagagtgacataatcagaactatgatatataattgtattaggatactactggttgatagtacactcaatcctaaatgc<br>ctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:COL25A1:NM:198721:5/37	
0	chr4	119774736	119774737	1001912	0	-	1104685446812	NA	NA	SINE	Alu	AluYa5	ttacaccataggatagtcacaaaatggctattgcaatagcgtcagaccactctctgtacaaagtatggtatccagcctctttcctgcacatattccatgt<br>acacctaatctgtaatttcccacatttccccatgacactgctaattggcagcctggtagcctggcagcttcttacatattgagtcttgcagcacaggcca<br>tggcataattggctacaatgccaagactgtaggaggcaatgatgttgaatacttctcccgctacccctaagaccagaaggatttaactcaccctagccac<br>ttgagtccaaatgtacattgttttaccagttatgactctgcatactgtcctgaacaggaggcattaattattctgcagtt<font color="green"><u>AGAAAAGTTCTAAACTAGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AG<br>AAAAGTTCTAAACTAGAG</u></font>gataggcttatctctgtctttatatgggttaagatgagagttctgttttctgaaccatagtctcacacttctgggtgaacct<br>agaatagaaattgcaattgccaagtttaggtccatcaaattcatgccgacattttgttgcaatgcttaatactacttatttaaatcaggagggggggaaa<br>tatcctaaatttgatggtatatgaagagaataaacataagtggggatcatcttgggcaaactgggtcataatgaaacacttacagcagtttaaattcaca<br>atggaaataaattcaattcaaatctacaaacatctgttgagaacctactaagccccagaacttttgctatgagctgaaaggaaaatacaaataggaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	7151639	7151640	1001913	0	-	1104685099028	NA	NA	SINE	Alu	AluY	ctgcagtctcagctacttgggaggctgaggtaggagaattgattgaacccgggaggttgaggctgcagtgagctatgattgcaccactgcactccagcct<br>gggcagcagagtgagaccctgtctcaaaaaataataatcataattgtctttaccttgatggagcttatgttgaataataaagtttatattttttattttt<br>atcttttaattatattttccattaactttttaaaatcccctcatttaagagggttcttttgagaattaaatgaattaattaatgtaaatgcttataagaa<br>tgccaggcatttattaaacactgtataaacctcagctattattattaagatcatatatacttgtaagacaggtgattaacttgtt<font color="green"><u>AAAAGTAACTTGTGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGGGATTGAGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAGTAACTTGTGG</u></font>agttccagattgctgataaattagcactgggaattaccgtattttatatacgtgccttgctatttttcagatctgggagaaagtaca<br>aaattcgtccaagaacaactttctaataacttattatgattgatagaatcttcttggaataatccagtggctgactagtcatctgaccaactgataaatg<br>caatttgtaatcaataacaagcatcctccagttgatgtaatttacaatgttatttgttagctggatgagtttggaaaagttacctaacctctctgaacat<br>ctgtaaaattgagatgtggtatgtggcatcacagatggacaattatatgaaaactgtagagtctggatgtggttgttcacacctgtagtcccagccac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	17712623	17712624	1001914	0	+	1104685545897	NA	NA	SINE	Alu	AluYa5	tttgaatggataaagtggccaatttcttactatttcttttgtacaacctttgcttgtttttaacctagactctttgctttgtgttgcttgctttgttagg<br>catggcaagtaatagaagatgtgggttctaattttagaagaaaattatccttggcaggcataaggaactagaaatttggtgctcagggagccaattttta<br>atcaaataggaaaatcaaaacatttgaatttaaaagtgtctgaattttctgcctcattgatttaagtttaagaagttggatgagctgaagatagtacatg<br>catagttcattggatttgggttgaactacttttacttagtatctgagacaatttatttttcatttaaattgtttttatctctt<font color="green"><u>CTTGTGTATATTTTTCT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAGAAAAA</font><font color="green"><u>CTTGTGTATATTTTTCT</u></font>aataaagaggttggatatggagcatcattaaaactaatctgcaaattaacacctgtatctctc<br>atggtgttcactgcaaataataatttccactctagctgtttacagcctaaagggatttattatgggatataaggttgcttatgtaatttcctggagtgtc<br>agataaccaagcgtgtatactgtgctatgacatgggactcttccagtggaatccactgttgccgctgtacctgcttcttggcaaccagaaaactagggac<br>tgaaccttaagaaaacctcttctgccaccaccatcacaggagaccacagaagagcttgaagcccatggtgccgacttccatcttccaagtctcagcggct<br>atatctgcttagtagatgtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	34113270	34113271	1001915	0	+	1104685699835	NA	NA	SINE	Alu	AluYa5	cattaatttttaataataactaggcaatcacaataaataatcaaattcaagtcattaaatttgagttaactggttattcagcagtccatgaagtttggtc<br>ttttggcccttttctttcagtaatgcgggcataacacatggtgacagaggagcagcttggtaaccatgagacagcatgaatgaggacgaaagtcaactgc<br>tggaaattagagagggaaagacaaagataatctaattcaatgaggttatcatggagaccctccctcagtttcatgctttcttcccctagacttctgttat<br>ataagagataatccttcatgtttaagccattttcagttgatttttcaggatatcccatattttcccaataaaaagtaccta<font color="green"><u>AAAATATTTAAAGTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATATTTAAAGTTTCTG</u></font>ctattggtaaccattaagtgatgccttgcttttgcttgtgaatataacctgcaagacctatttcaaaagcaagaatt<br>ctagaagcaggataataaaacaggaattatatcattcagtggatgagtctttgttttgaaacattagccagataccatgtggtcaccaggcagattcggt<br>gaacaagcatatcaaaatgacacattcaggcctataaagggctagtagaagattttgatactaaccactcctttctgtacatgaagatcaagtcagaata<br>tgttttgtttttctctttgtctcatttttaaccttctattgtcactctactgcagatagcaacaatatatatatcagagaattatcagttaatgaaccag<br>tacc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	14685944	14685945	1001916	0	-	1104685151889	NA	NA	SINE	Alu	AluYa5	ctggaatgtaagactaaaagaccctttcataaatagtaattctggtggtaccttctcaacctagagcaatcgtgtgaactaaggtggtttctacaaaaca<br>cagaaccacgattgggatgtaaattacttttcactgtgaccacagtgatggcgaactacatcactcactaagggtggagagggacttctcctcctcatct<br>tattagaataacaaatgaccacccacctaaaggctgcaccagcccactccgtgcccacactgccctgcgtttcggcaacatgtggcagttctgcagcaaa<br>accttcaattcagtctctcagatttatcacaagaacctcacatgccctcaagtggcaacaagctaaaattacaattgggcac<font color="green"><u>AAAGAACTACAAATGTGC<br></u></font><font color="red">TAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAACTACAAATGTGC</u></font>gaaaatactggctacacagatgtgagctgggaaatgaggtgaagggaagcccagaagaccggctgagcatctgggga<br>catgatacagttatctaaaaagtaggtacagtactcaactgaattactcaggagaccctgaagacctaactacacagagagaaacaattgtttctgattc<br>ccttcacacactggtcaaacagttcagggttgtagacttccaggaaatgcagaaatccttaagacaattttaaaaaatgaagcatgaaaaaagccatcag<br>aaaagaatgaagtcaaatttattcagaagaaaaaagtgaatacaacttcaaacgctttcagaggtcacagcacatggaacacacgtaaataacctttgtt<br>ttcca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAM105B:NM:138348:4/7	
0	chr5	5595247	5595248	1001917	0	-	1104685098632	NA	NA	SINE	Alu	AluY	ccctctttaagggtatttattgtaaatttcattaacctcttatcttgttattgttttatttcttccatttagtatgttccactaatttttttctaattca<br>gactcaaggcttggttcattaatttgtcatctttcttcactatggatttgagacaataaagtttcctataggaatatgttaaactgagtcataagtgttt<br>tagtatgtaacatttatattataatttggttccaaagttcttaagttttattataatttattttttgacctatgaggtaaataaaagtgtgttaacagct<br>atttccaatccatgactgtttttatctgcatgttgtttactgattttcagtttttatattacagaggcaaagaatgtgttttctataatatt<font color="green"><u>AAAAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCGCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAAGTC<br></u></font>tctatattcagaaaagaataggactaaaaataatcacgtcatatcttcacagaccttgaagagtgcagggcaacatcagaatttggtaaagggtcaatgg<br>aactaacagaacaagccatgtcaggtggtgctctgagccagtcccaggacaagaccaggtaatcccatcatcactggaagcactaggaggatgccatctt<br>ataggcaaacattttaaataattattctccatgttgttctttttttttttttagttaacatattcaacacctcacacagttaccgttttttgtgtgtggt<br>gaaaacacttgaaatctactctctccgcaaatgtcaatatacagtacattttattaactatgtcaccatgctgtacattaggtcttcagtac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	186361924	186361925	1001918	0	+	1104685742035	NA	NA	SINE	Alu	AluYa5	tatcttttgtatcataaaaatagaacatagtaaattaatgttttaaaaaagtacacccagcaggatagatttaagaatcatatttatattaaaatgtaaa<br>agatttaactctgggttattttcaatttgtgaaatttgtgctatgtaatttcaaactctttaattcacagaaagcgaatgaagagcaccatcgtttactt<br>aaaggagcaccatttaagttaaatcttcacccaagggactattttgacgctaatccttatttttctgaggaatctttaccaccaattaaaaaagaagaga<br>agaagaaaacaatttcaaatacttttaaaccgtcttctcctggtaaaaaggtgagtttacaattttaggatgaaaaaattaagtatta<font color="green"><u>AAAGAAATACTG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACTG<br>TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAGAAAT<br>ACTG</u></font>tctcttgctatcaaatgattttttttcccatgtaaataataaacttttgttcgtatggataccaagaatcattggacccatttttacaaaattaca<br>tgaaatcaccaagtatgaatagtgtaggggataatgaagcccttgtcatgaagtaattattagtctcttcaaatgtatttgaatttataatttttttttt<br>tgagatggagtctcactctttgcccgggctggcagtgcagtggcatgatctaggctcactgcaagctccgcctcttgagttcaagcaatactcctgcatc<br>agcctccagagtagctgagattacaggcatgtgctaccatgcctggtgaattcataatgaatttttgaagtgcttctctagaccctaggtct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	189315041	189315042	1001919	0	+	1104685743155	NA	NA	SINE	Alu	AluY	ctacacgttgtatggtctccccatatattaaatgttagtattttattttattttataaaacgaaataaaaatagataaagttggccaggcgcggtggctc<br>acgactgtaatcccagcacttctggaggccgaggcgggtggatcacgaggtcaggagatggagaccatcctggcgaacacggtgaaaccccgtctccact<br>gaaaatacaaacaaaaaaaaaagaaaaaaggaaa<font color="green"><u>AAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCAGGAGGCAGAGCCGCAGTGAGCCGAGATTGTGCCCCTGCACTACAGCTTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br></u></font><font color="red">ATAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAA<br>CACGGTGAAACCCCGTCTCTACTAAAAATAC</font><font color="green"><u>AAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCAGGAGGCAGAGCCGCAGTGAGCCGAGATTGTGCCCCTGCACTACAGCTTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</u></font>aaa<br>aaaaaaaacaaaaaaaaaatagataaagtttctcatattttcttctacacctcaactgattgtctttctcactctccttgagggccacatttagtctgct<br>tgcaggtgctaacacggggaatgatgatttggtcagatgcatgttttcaatcactcctcacagtggaagataagagttgagggatgcaggattcaaggag<br>ggaagtgtaggaaccaagatattatgatgga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	1585518	1585519	1001920	0	+	1104685336157	NA	NA	SINE	Alu	AluY	tactcggtgtcctccagcttagttccaagttttctgtcgctccggtgacccttcgacctggattcgagcccccatgtgtgggcgccacttgctgagacca<br>gctcggttgtggagaccctaacccagcggcactagaggaattaaagacacacgcacagaaatataggatgtagagtgggaaatcaggggtctcacagcct<br>tcagagttgagagccttgaacagagatttacccacatatttattgagagcaagccagtcataagatttactaaaagtattccttacgggaaacaaaggga<br>tgggctctggctagttatctgcagcaagagcatgtccttaaggcacagatcgctcatgctattgtttgtggtttaagaatgcctt<font color="green"><u>TAGAGAGGGTCTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACCCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCCCAAAAAAAGATATCTAA<br>CTAAAAAAAA</font><font color="green"><u>TAGAGAGGGTCTCTT</u></font>aacaaacaaacagctctcccctctcccctctttccacggtctccctctgatgccgagccaaagctggactgtact<br>gctgccatctcggctcactgcagcctccctgcctgattctcctgcctcagcctgccgagtgcctgcgatggcgggcacacgccgccacgcctgactggtt<br>ttcgtgttttttgggtggagacggggtttcgctgtgttggccgggctggtctccagctcctagccgcgagtgatctgccagccttggcctcccgaggtgc<br>cgggattgcagatggagtctccttcactcggtgctcaatggtgcccaggctggagtgcagtggcgtgatctcggctcgctgcaacatccacctcccagcg<br>gcctgccttg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SDHAP3:NR:003263:3/7	
0	chr4	179198329	179198330	1001921	0	-	1104685739558	NA	NA	SINE	Alu	AluYa5	agatgaaactaaaagagttcctgatgctctattaaggttatcaaagagacctggcaatacccatagaataaaagtacttggatttgagggtattatactg<br>agtaaaactaaccattacccccatctgccaactctgatagttaatcataaatacttgtgtgtgagtgcacctatgcatgaactccccctaacccccacca<br>ccactctctctctctcactgtcacacacccctacaccacacacacactcattacatcaacaaataaaaattaagcactttctgtattctaggctctgtgc<br>aggtaaaggataatgaaaaacaacttgtgccctgaagggctgatagcacaaagaggtgagaggcatgtaaaaaatcattttt<font color="green"><u>AAAGAAGGGATGACCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAATGG<br>TGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGAAGGGATGACCATG</u></font>cgacacgcattcagatagcgcagaagtagaaagtagggttttgaaatttcttaagggtgttggtgagttttacaaaaa<br>ataagtgtccatgtgtgtctttaaatgaggaaaaatgcgaagtcattttaaattaaacattctgggagaaaaaaaaaacaattgtgggtgtcaggtcaga<br>aaaagcttccatggaaatagaatagtgttcaatgttctgagtagacagctctataagctgaaaacattggctaaattaattacttctgtgaattctaaga<br>tagagtatatggcccaaagccagtctcaaaatagtcaattttattcttttctggttttaaataccttaattattgcctttattattttctactttcttat<br>ttta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	164757645	164757743	1001922	0	+	1104685735312	NA	NA	SINE	Alu	AluYd8	cttctttttataatgccaaaaattgtcatggagccctctagaataaacatctttccatgtaagtggaaggagctggctttatagtgacccatcttcagat<br>ccttacctacatggtagttgcaatttatttatttatttatttatttatttatttatttatttagagatggagtctcgctctatcatccaggctggagtgc<br>agtggcacaatctcggctcactgcaaactgcgcctcccaggttcacgccattctcctgcctcagcctcctgaatagctgggattacaggcacccgccacc<br>acgcccggctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgccagcct<font color="green"><u>NNNNN<br></u></font><font color="red">TNNNNNNNNNNNNNNNNNNNNTGCCTTGGCCTCCCAAGTGCTGGGGATTACAGGCGTGAGCCACCGCGCCCGGCTAATTTATTTTTTTGATACACATTTA<br>CTCTACGTTATATTTCAGGGCTTGTTAAAAGATGCCTCCTAACGGTGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGC<br>CTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCAGCCT<br>GGGCGACAAAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>atgcctcctagtctctctgctgtgaggaagaaagttctaccttta<br>gaataaagtagacaaaataaggaaacagagggtccatctggccaaagctgagtaatagaagctgtagtcatcagcagaggtaagtgtgacccccaataaa<br>cagtgataccaagtgcgccgccattggcagcaaagagcactgagtctgcttgatgacaggactacaatagaagaattattcctgatctcatgtgagttag<br>cccattagccccctggaagcctcacagagtaactggagaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaa<br>ttttaataattgctcgtatataatacaggactgaattagagaaatagaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MARCH1:NM:001166373:3/8	
0	chr4	175211588	175211589	1001923	0	+	1104685738234	NA	NA	SINE	Alu	AluY	gtagagatggggtttcaccatgttagccaggatggtctcaatctcttgacctagtgacccgcctgcctcagcccccaaaagtgctaggattataggcgtg<br>agccactgtgtcctgcctctttcttcttcttaatgaatttattgctataaacacttctcttattctgcttttactgcatcctatatgtttgggtatactg<br>tgttttcattattgtttgtcttgagatattttataatttctgttttgatttattctttgacccagtattatttaatagtatgttatttaattcccctgta<br>tttgtgaatttttccattttctttctattattgatttctagtttcattccctcgtgatcagacaaaatgtttagaatgtttttagtcttct<font color="green"><u>AAATTTGTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAATTTGTT</u></font>aagacttgttttgtgacctaggctgtgatcagttatagagaatgtttcatgtccttttgagaagaatgattattttgctatggttg<br>ggtctcatgttctgtatatgcatgttaggtctttggtctatagtgttgtatagtttgcaatttacttgttggtattctgtccggatgaccagtacattat<br>agacagtgacgtatcaaagtctccttctgtattgtattgatatctatttcttcctccaattctatcaatatttgctgttggcattctgtctggatgacct<br>gtacattatagagagtgatgtatcaaagtctccttctatattgtatcgatatctatttcttccttcaaatctgtcaatgttcactgtatattttaaggtg<br>ctttg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KIAA1712:NM:001145314:1/11	
0	chr4	176281837	176281838	1001924	0	+	1104685738571	NA	NA	SINE	Alu	AluY	cctaacctatagaataaaggttttcaatgatttctatgtataaactttccctggagtaactgatatcatgtagtcctatttctattcacagagtctgatt<br>tagtcattatggaatagaacccagaaatatgcatttaaatatttgttatgcttctgatgcagttgtttcctggttcagcatgagggaaaaaaagggaggc<br>tgaaaaaggtattgcatagttatatgtgtaatcccttatattaaaaaaaagaaaactaagaatcaacagaaaaaaagtgacaaaaaaaaaaaagagcctg<br>gagaagcaagcagggatcaaattctgctggatcttgtcggctacaataagaatttgggactttttctttacaatcataggaaggca<font color="green"><u>AAAAGGCTTTAGGC<br></u></font><font color="red">CCCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGC<br>TGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTC<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGCTTTAGGC</u></font>ataattgatatgactagttatatgttgtagaacaataacaaaaaaac<br>tggttgtagagtagagatttgttttcaggaagaagactgaacaagaagggtctggttaatagtagcagttgtagtattaagaaactatggtaattagaaa<br>taggatggtgatgatagagataggaagaatatggaattgaagggaatgtagaaaggaaattagtgagtacctggtgatgtatacgatgtggaaggtggta<br>aaagttagagaaatgtcagggtcagtttagccaaccgtttccagcctgtctgtttatggaagatggagtccatcacagccaatgagaaacactggagtag<br>agcctggctttcgggatgatgggtggaagtgggaggatc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	167338794	167338795	1001925	0	-	1104685736046	NA	NA	SINE	Alu	AluYa5	gatataatagattttataaaaagtttcatccaacagctgcagaatacactcttctcctcagtacataaattattctcaaggataaatgacatgttaggca<br>acaaaacaagtcctgaaatactcaaaaagtttgaaataatatcagtcatattctcgatcataagggaatacaattaaaaatgagtaaaaataggaatttt<br>gggaattatacaaatacatggaagttaaataatatgctcctgaagaaacactggatcaaagaagaaattaagaaaaaaatttaaaaattacttgaatcaa<br>atgataatagaaacacaacatacaaaaacctataggatacagtgaaagcagtactaagaggagagtttacagctataaactcctgcatt<font color="green"><u>GAAAAAGTAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAAAGTAGA</u></font>aaatgtcaggtaaacaacctaataataccttttaaagaactgaaaaagcaacagcaagccaaacctcaa<br>attagtagaagaaagacataataaagatcagagcagaaataaatgaaatggagatgaagaaaacaatataaagttcactgaaacataaagttgtcttaaa<br>ataaacaatttaaaaaatcaacaaatctttggccagactaatgaagaaaaaaagagagaagaccccaaaacttacatcagggatgaaaaaggagttatta<br>caaccaatacaacagaaattcaaaggatccctagaggctactatgagcaactatgtatcaataaactggaaagcctagaatacatggacacattcttaga<br>cacatacaacttagcaagtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	123886827	123886828	1001926	0	+	1104685719650	NA	NA	SINE	Alu	AluY	atttatccagagctgacaaagtccacagtctgaagcctgctttattatttctccctagtttaggtaaggtaataatccccagatagtcacagtaccttct<br>gtctacctttcttcttgtcacattttctccttaaagatgttttagtataataatgaattgctatccacagtaaaggtgcttcatcataattttgcttcat<br>gctgaatttgtaaactggccacagtcattgacgggcagtctgtaacagcaataaaacagagttgctacggaactgactcaaggtcaaaccctcagtgttg<br>ggaagtacaaaaacactgcctctcagagaatgctgtttcttattgtttcatgtttaacacgataaaaggaaaggacaccaggcat<font color="green"><u>CAAAAAGTCTCTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAACAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>CAAAAAGTCTCTCTT</u></font>aaccaagagttttttttttaaataaacatcttaatcaaacaaattgggaaacaattttcctgtggcttt<br>agacagagccccaaaaatggagggcagagggtacctcaagaaactaaaggaatggattccagcatggtcagctcgtgacagtcattcctgttagactagc<br>acctgcagatgagagttttattggaaacttctcttcagcccaatgtcccacacaaacaagagggttttgtttgtttgatttgtttaggctgctatgttat<br>gttccatgaacaaaatgatcttttagaaatatcatggaggccaatctttttttttttttttttgagacagtctctctctgtcgcccaggctggagtgcag<br>tggcgtgatgttggct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	133762924	134038843	1001927	0	-	1104685717269	NA	NA	SINE	Alu	AluYa5	tttagatacttctgtaagagctgaagatcccaaagtttgaaaacttttagcgttttccaactttcctctgaaaggctggaaaccctgctccaagagcact<br>ctctacttaggt<font color="green"><u>GTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACA<br>TGTTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCT<br>TGAACCCGGCAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCTAAGT<br></u></font><font color="red">A</font><font color="green"><u>GTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACATGTTGAAACCC<br>CATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGCA<br>GGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCTAAGT</u></font>gcctctggcct<br>ccatttagtattttctcggcacctgcattttcagtttttcctcggcaggaagggcaagaataaaactgcttctccagttcatttggctgtattagaacag<br>t	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SEC24A:NM:021982:15/23	
0	chr5	130853259	130853260	1001928	0	+	1104685717984	NA	NA	SINE	Alu	AluYb8	tgctcactatctgggtgatgggatcattcgaaccccaaacactcagcaccacgcaatatactatgtaagaaatctgcacatgtacccccctgcatctaaa<br>ataaaagttgaaattatttttaaaaattggggagacatccatttttctggataagaagactccacgttagaaaaaaatgcccaaattaatctatatatag<br>tcttctgccccacaaaaaaagctggatttcacttgaaacgtttctaaatttctagaagaataaaagcagaaacactaaaaaaaaattgctgttaggatat<br>cttcccctcaactgtccaaattaaaaatacttctatcatttcacaaggcttttcttatggtgttaaaggctaggtgttcactt<font color="green"><u>CATTTGAGAGATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>CATTTGAGAGATTTTTT</u></font>taaaattcaaataactagacaaatcacttcagctatcccaggctaagatacatacattggcaatgtac<br>acctgtaactaaggggtatattcatagctccaaaagggaatctaaaggcagcctaaggtgaaaggaaagatcaagggtccagtactgatatttaattctt<br>ctccttgtttattcccgaggatctgattggaaacattcgcgcatgtacacacacacacacacacacacacaaaatttagttagacatttctcttacccat<br>ggattaaaattatagaaatcttgtactttggagggtatatcttatcaatctattataattctgtgtttattccttttactctcctttaaatattttccaa<br>tttttttttcaactt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RAPGEF6:NM:001164386:7/29	
0	chr5	91031026	91031027	1001929	0	-	1104685647738	NA	NA	SINE	Alu	AluYa5	ttaagccttcacctctgcctccaattggttctttgcactatcatacctctttctgagtagtgctttctccatgacagcctgaagaccaatcagcacactc<br>ctccctcttcccagtccatgaaaaccttggactcagcctcatagctagcaaacctctttagggtcccctgtctttgctgagagcttttctgtcacttaat<br>aaatctgactctgccttactctctggtgtccatgcacatttttcttcttggttgtgggacaagaacctggagcttaccactggtgggagtgaaagagctg<br>taacactccctcccagtcaccaaacaacacgattgagaaagctgcaacacaattggactaggcaaaaagacaaggtgttgatttactatt<font color="green"><u>AAAAGTTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTTCCC</u></font>ggtagataagaactctggaactcagtgtcttcaagatattcatcacttattatgtggtggcaaatatgggcaacagtggctttat<br>tgaacttactagtactctaagtagcttaggcaaaagttctagagttctgactgttatagtttgtgtcacatacccatgttatagtttgtgtcacataccc<br>agtcctgacttaatcaaagtggtgcccagggtaacataatgtatccactagacaggtctgagaatttcaccagtctgcgggcaggggctggggtcagccc<br>cacctcaaccatatgaaatcaatttgatccaccaaaagaaacattgacaccaacaagatgaacataagagagaaataatttttaaaaacacatggaaatt<br>gatat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	114739737	114739738	1001930	0	-	1104685721654	NA	NA	SINE	Alu	AluY	cctctcacattgccttactcctcttaccaggccatagtagataacatggatcctcaaatctcactaatgaatctaaaataatggctttaacatagctgct<br>cagattacacacactatcagagtattttccctttaagataggatatcagtgaacactacaagtatcaacttttttgttataaaaatttcttcagcaatcc<br>caattactttcctagtcctttttaatctgtcatataaagcctttttattgttacacctattcactaattatgactgctattttgctcaaagaaatattcc<br>cccaggcatacatctatttctatttcctaatgacaaagtatgcttattttatgtagtgtcacaatattattttattgatgctgctt<font color="green"><u>TAGAATGTTTTTTT<br></u></font><font color="red">AGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTA<br>AAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGC<br>CTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>TAGAATGTTTTTTT</u></font>attgtcattcatcaaggc<br>atattgcacacctagatcaaaaagagaaccagcaagcacacacatttcttaacctaagtaacatctgaaaacgtaagacttagacttcagttacattttc<br>cactgaagaaaatccatacaactttggtgcctatccaagaacttataatgtcaatttctaacatacgttataacccccagtacacgtgtattttcagaag<br>aaagcaagtcatagcaaatcaaatttttcccaaatgctatttggtatatttttatagcaaattaaaaatttttgaatatgaaaactgaaggtggccaggc<br>acagcagctcatgcttgtaatcccagcactttgggaggctgacctgggaggatcacttgaacccaaga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	100497263	100497398	1001931	0	-	1104685724588	NA	NA	SINE	Alu	AluY	tataaaaaagctcaatatcactgaccattagaaaaatgcaaatcaaaattacaagataccaactaacaccagtcagcatggctattattataaagtaaaa<br>aaaaaaaaaaatactgatgctggtgaggttacagggaaaaaggaacacttcaacactgttggtggaaatgtaaattagctcaaccattgtggaaaacagt<br>gtggcaattcctcaaagacctaaaaaccaaactaccatttgacccagcaatcacgttactgggtatacctacaaagaaataataaaatattctattataa<br>aaacacatgaaaacatatgttcattgcagcacttttcacaatagcaaagacatggactctacttcaatgctcttcagtggttgactagataaaga<font color="green"><u>NNNNN<br></u></font><font color="red">CGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATCGTGCAACTGCACTCCAGCCTGGGCCACAGAGCAAGACTCCGTCTCGGGAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>aaatgcggtatatatacactatggaatatatgcatccataaaacagaatgagatcatgtccttttcaggaacatggatgt<br>agctggaggccatcatccttaacaaactaacacagaaacagccagtcaaataccacatgttctcacttataagtggaagctaaacaatgaaaacacagag<br>acacaaggagaggaacaacagataccagggcctgcttgagggtggagtttgagaggaaggatagggccagaaaaaataactattgcctattagggttagt<br>acctgggtgataaaataatctatacgacaatcccccatgatatgcatttacctatgtaacaaacctgcacatgtaccccttaacataaaataaaagttaa<br>aaaagaaatacaaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	109245964	109245965	1001932	0	-	1104685722788	NA	NA	SINE	Alu	AluY	acagcaggcattttctgattccataaggaagacctgatgtccttatgcatcaaaagttaaacatgacaaagagattttcaaagaaatttagatggtatgg<br>tgaattaataagattttttaaagtcactatgaagcatctactatatgctagtcttatttcagatgctgaggatacaacagtaaacttcgttttcagggaa<br>cttacctttacttggaaagactgagaaaacaaaaaacaaaagcaagttaaaaacaaaaaataaatgatgtaactttagacactaatagatgctctaaagg<br>aaaattaatcaagttgagagattgtggcgacacagcagggactcaaggaccattttaggtcagatggtcagggaaggactctgga<font color="green"><u>ATTTTGAAGGATTTT<br></u></font><font color="red">TTGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>ATTTTGAAGGATTTT</u></font>ctggaagagaaacttcaggcagaggaaacaggaattgcaaagagcctgagaagaaaataagcctggcatgtttaagg<br>aacccaagaaagctcagatgaccagaacagaatgtgtaatggggacaaaaatagaaaataaaattaaatctgatgtgagatttattggccagtgtaaaga<br>atttgagttggaggattttgaatgagaagtgaaagaatctctttgagattttaaaagatctttgaaggtgatgtgtggacactggattttgggcagtcta<br>gagtgaaagcaaaatccattacaagactttcaccctagtccaaatgagagatgatggtgacttaatagaatgatagaataggatattaatgacttaatag<br>aatgatca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	54729294	54729295	1001933	0	-	1104685094704	NA	NA	SINE	Alu	AluYb8	ccggcctgacctcttgatttctttctctgctaattcactattgttgtatagaaatgctagagatttgggggcatggtgcctcacgcctgtaatcccagca<br>ctttgggaggatgaggcaggagaatcatgaggtcaggagatcgagaccatcctggctaacacagtgaaaccgtctctgttggaaatggaaaaaattagcc<br>aggtgtggtggcacgcgcctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcggaagttgcagtgagccaagatcgt<br>gtcactgcactccagcctgggtgacacagtgagactcggtcaaaaaaaaaaaatgctagagatttttgtatgttgattttatatccttt<font color="green"><u>AACTTTACTGA<br></u></font><font color="red">GTGGCCGGGCGCGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCTCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAACAAAAA</font><font color="green"><u>AACTTTACTGA</u></font>tttatcagatctaagagttttttggtagagtctttaggtttttctacatataagatcatatt<br>gtctgcgaagacggacagtttgatttcctgttatacaacttggatgcctttatttcttttctttttttcttttcgagactgggtctccctgtcacccagg<br>ctggagtgcagtgacacgatctcagctcactgcaacctcattgtcctgtgcttaagcagtgatgctcccacctcagtttcccaaatagctgggaccacag<br>gcacatgccaccaatcctggataattttttgtatttttttttttttttgtagagatggggtgtcgccatgttgcccaggctgttgtgaactcctgacctc<br>aggcgatctgcccgccttgaccttccg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPAP2A:NM:003711:4/6	
0	chr5	55689496	55689497	1001934	0	+	1104685095043	NA	NA	SINE	Alu	AluYb8	attcagcatcccttcatgttaaaaaaaactctcactaaactaggtattgaagaaacatacctcaacataataagagccatctatgacaaatccagagcca<br>acattaaactgaatggacaaaagcctaaagcattcctcttgaaaactggcacaagacaaggatgccctctttcaccacttctattcaacatgttattgaa<br>gtcctagccagagcaattaggcaagagaaagaaataaagggtatccaaataggaagagaggaagtcaaattatctctctgtgtagatgacatgattctat<br>atttagaaaaccccagagtctcagctcaatagctccaccagctgataaacaactttagcaaattttgggatacaaaatcaatgta<font color="green"><u>AAAAATCACTAGCAT<br></u></font><font color="red">TCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACCTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGA<br>GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCACTAGCA<br>T</u></font>tcctatacatcagcaacaaccaaactgagagccaaatcagacaggcaatctcattcactattgccaaaaacaaaataaaatacctaggaatacagctaa<br>ccagccaggtgaaagatctctacaatgagaattaaaaagcactcctcaaagaaatcagagaagacacaaacaaatggaaaaacaccccatactcatgaat<br>aggaagtatcaatatcattaaaatagctatattggccaaaccaatttacagattcaatgctattcctatcaaactaccaatgaaattcttcacataacta<br>gaaaaaattgttttaaaatttatatagaaccaaaaaaatagcccaaatagccaaagcaatcctaaacaaaaagaacaaagctggcg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	40181658	40181659	1001935	0	-	1104685203503	NA	NA	SINE	Alu	AluYa5	ggtgagaacatgcagtgtttggttttctgtttctgtgttagttggctgaggatgatggtttccagcttcatccatgttcctgcaaaggacatgaactcat<br>tcttttttatggctgcatagcattccatggtgtgtaagtgacacattttctatatccagcctatcattgatgggcaatttgggttggttccaagtctttg<br>ctattgtgaacagtactgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatccacccagtaaagagattgctgg<br>gtcaaaaggtatttctggttctagatccttgaggaattgccacactgtcatccacaatcattgaactaatttacattttgaccagtggtgt<font color="green"><u>AAAAGTGTT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGTGTT</u></font>ctatttctccacatcctctgcagcatctattgtttcccgactttttaataatcaccattctaactggagtgagatcctttctcattgtggt<br>tttgacttgcatttctctaatgaccagagatgatgagctttttttcatatgttcattggccacataaatgtcttcctttgaaaagtgtctgttcagatcc<br>ttcacccacttttatggggttgtttttttcttgtaaatttgtttaagttccttgtagattctggatattatccctttgtcagatggatagattgcaaaca<br>gtttctcccattctgtaggttgcctgttccctctgatgatagtttattttgctgtgcagaagctctttagtttaactagatcccatttgtcaattttggc<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	40982425	40982426	1001936	0	-	1104685203669	GAGTCAACCACCACAGATAGGA	CCTGTGACCACAGCATAATGA	SINE	Alu	AluYb8	caaaagaaaaaagaacaggggcaaacttccagtcctatgtttgacacatactaaaaccccaaagagaagactgaattgtatttgttctcagacaagacac<br>ccctgtgaccacagcataatgaattctgctctaacattttagtggttcaatctcccgacaagagtaagtattccagccaggcgtggtggttcatgtctgt<br>aatcccagcactttgggaggccaaggcagacggattacctgaggtcaggagttggagacgagcatggccaacatggtgaaaccccgtctctacta<font color="green"><u>AAAAA<br>TGCAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTGCTTGGGAAGCTGAGGCACAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAG<br></u></font><font color="red">TGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGCAAAAATTAG<br>CTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTGCTTGGGAAGCTGAGGCACAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAG</u></font>gagatgagatca<br>ccccactgcgctccagcctgggcaacaaagtgagactctgtcttaaaaaaattaaaaaaagaataaggaattcctatctgtggtggttgactctatagga<br>tgaagtgtgagattactactcaggatagaaatagtttgtatctgtcatttttgttcaagtcctctttatatttggttccattgaggaaaaccaccctctc<br>taatcaggagatcacgttctttctgttatcctagtcattttgtagagtgtgttctggcccatgggctgtgtcaatcatactta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	592	405	NA	exon:3UTR:C7:NM_000587
0	chr5	57716225	57716226	1001937	0	+	1104685095552	NA	NA	SINE	Alu	AluYb8	gatctaaccctagttaagttttcaggtgactacagcactgaccggcagtgtgactgcaacctcatgagttaccctcagccaaaatcatccagctcaacct<br>ctcctggattcctgacccaccatacactgagtggtataatcagtgtttgctgttttcagctgcttagttttagattaatgtgtttcatagcaataaataa<br>ctaatataagagacaagagtagaaacaggatgatcaggcataaagactattgcagtgatccagggaagagatggttataaatattaattaagataaatga<br>gaagattatagatttgctttaagaaaagcctggcctgatatatcagtatatgtgaaaggacctggaaaacctcaactctctccatg<font color="green"><u>AAGATATTGGTGTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAAGCAGAGCCTGCAGTGAGCCGAGATTACGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATTGGTGTG</u></font>atttgggggcagaaaaagtccactgaagcttcaccaaaacgtaagagtgacaa<br>cattgatcagaaattgattcttctgctctttgcgctgagtaggccattcttggagcaattagtccaattctgggtgatacacttacaatagagattaaga<br>aacaagacctcatgcagagaatgctctagaattgtagagtggcagctcaagctgggtgatgagaggggtcacatggaaaaaagtgggtggagtttttcga<br>tcaagtgttcaatgtatggggggttgggtgtcaaggatggctttgagctttcagactaacacaactggttggaaaggttagtcactgagaaatggaataa<br>taaaatcggtctgggaattaggcaagaagatca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	58255808	58255809	1001938	0	+	1104685095657	NA	NA	SINE	Alu	AluYa5	cttgctctgtcacccaggctggagtgcagtggcacaatcttggatcactgcagcctccacctcctgggttcaagtgattctcctgcctcagcctcctgag<br>tagctgggattacaggcatgtgccaccacacctgggtaatttttgtatttttattagagacagggtttctccatgttagccaggctggtcttgaactcct<br>gacctcaggtgatccacctgcctcagtctcccaaagtgctgggattacaggcatgagccaccatgcccagctgagctgtttgtatttaatattggcatac<br>gtcttcgatatgaacaagttcattgtatattatttagggaaataaagctgttccagtgaggggactacagtcagtgcaaaaatttt<font color="green"><u>AAAAAAAAATATGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAAAATATGG</u></font>aaagtattttgtcctacatgttaggcactgaaattacggttactaaatgagagggaaatttgagatttaaaaaaaaagaaagtaaa<br>ggaaatcccctaaataatgccttgcaaactgatagctgacatagaataaaaaactgaagcaacaatcaagttaaatattctcttccccaagggacacagg<br>gcactttagagacaaactggctatgttcccatatcagccttgacatttttactggacaaccttatccttccagcctcttttgacctctctgttaaatgaa<br>gggaatattgggttgatgtagagttgaaatgagatagcaaaaggtgtgatgcagtcttagtgatcattcttcccctggattccttcctcttccattcccc<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	43393806	43393807	1001939	0	-	1104685204236	NA	NA	SINE	Alu	AluY	ttctgttatggaaagaacaatcctgccaatgaaagattcctctgtaccaatacagaagagaaaaaaaagtattactgagtaagcattaacacatttacaa<br>gcatgtacggcagcacaaaagtgactatgaaattggaacagaattttatatagcatagcagaagaaagaataacttctcacctcctcaaaagataaaagg<br>gtcacaccttgtgacagtttctacacgtcttgtgagagaccctgagctaaatccagaggtgtttttaaaaatacatctggaggttatttggcccttggcc<br>ttggatatatatagctattattacaaaaactgaagagtgggcttaatccttgtagagatttatctcaatccaaaagtaaagatt<font color="green"><u>AAGATACACTATGTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATACACTATGTCT</u></font>taaagaacctcatcttaagaatggaggaaaggaggccgggcgcggtggctcacgcctgtaatccca<br>gcactttgggaggctgaggtgggtggatcatttgaggtcagaagttcaagaccaacctggccaacatggtgaaacctcacctctactaaaaatacaaaaa<br>ttagctgggcatggtggctggcacctgtggtcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccga<br>gattgtgccactgccctccagcctgggcaacagagtgatactctgcctcagaaaaaaagaaaagaaaaaaaaaaacggaagaaagggatgggtgtggtgg<br>tagctcatgcctgtaatc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CCL28:NM:148672:1/3	
0	chr5	43517924	43517925	1001940	0	-	1104685204267	NA	NA	SINE	Alu	AluYb9	taggctgtagaatggatgctgcgttagcagacatgaaaacaacattaatctccttgtacgtcatcagagctcttaggtgaccaggtgcattgtcaataag<br>tagcaatattttaaaagaaatctatttttctgaatgtcattttcaacagtgggcttaaaatattcagtaaatcatactctaaacagatgtgctgtcatcc<br>aggctctgttgtttctggagtgcaggcagagtagatttaacataattcttaagggccctaggattttgaaatgagaaatgagcattggtttcaacttcaa<br>gtcaccagctgcattagaccttcacaagacaatcagcctgtcctttgaagctttgaaaccaggcattaatttctctctggctat<font color="green"><u>GAAAGTCCTGGATGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACCGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGTCCTGGATGAC</u></font>tcttccactagaaggctgttgcatctacattaaaaatccgctgtttaatttggccaccttcatcaatg<br>gtcttcgttagatcttctggataacttgctgcagcttctacatcagcacttgtggcttcaccttgcccttttatgttacagagatggcttctttccttaa<br>atttcatgaaccaactactgatagctttaaacttttcttcaactccctcacctttctcagccttcatagaatcgaagagagttagggctttgttctggat<br>taggctttggtttaagggaatgttgtagctggtttgatcttctatccagaccattcaaacttcctccctgtcagtaataaggctgttttggtttttctta<br>ttattcatgtgttcac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	18470163	18470164	1001941	0	+	1104685175261	NA	NA	SINE	Alu	AluYa5	aaatgctgccaagtgtcaaagccatttgttctgtacaataaaggttggactaaacgctaaggtcagttctaaccttccaaaagtctgctagaggcatgtg<br>tttccttgttatgattttttaagaaaggatttaagagtgttaaggtcatttccatttgaattagtattcgaggcaggtcttaagttgggtgccaaagatt<br>acttaacaactagagcttgtgtttccataaaaccgaaagctcactctcctgtactggtgttgaaacctttttattgaaggctggatgcttctaaaatggt<br>acctgcatacaaaggtttacaactgatgtacaattcaaatttcattttctaatcattcagttttgaggaaatcaataagatcatt<font color="green"><u>AAAAATACTTTTGGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACTTTTGGG</u></font>ttatggtttcttaattttcttaatcatctcctagaatgtcaacattatttcattttgaaagtgtgcttatt<br>gtttgctaaccttgaatttgcattcccaaagaaatattgaatgaaccattttatatagcagtgattttaatcagtgccctaaccagcaaactcattgcaa<br>tttaagttatgaatctgatgatttggaggagaataataattaggtttttctgtaattcaattattttcatttgttagataataaatctagttttctttag<br>accctaaagataatgcccaacactatgagaaaaaggaaacgaatctgcttaaatgcgttaatagcaattataatgttttatttgtatatttttacgtaaa<br>ctaaagaacttttg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	18899367	18899368	1001942	0	-	1104685175441	NA	NA	SINE	Alu	AluYa5	cttcaacagaaatgttgcaaatgtcttcttgcaaccaagcatccaattctaatttaaataattcatagctgcatactattaaaagaatgacagtggctgg<br>gtgcagtggctcacacctgcaatcttagccgaggcaggcaaatcatttgaggtcaggggtttgagaacagcctggccaacg<font color="green"><u>TGGTGAAACCCTGTCTCTA<br>CTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACACACCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAG<br>GTTGCAGTGAGCTGAGATCGAGCCGTCCAGCCTAGGTGACAGAGTTAGACCCTGTCTCAAAAAAATAAAAAATAAATAAAAAATAAAAATAAAAGAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAT</font><font color="green"><u>TG<br>GTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACACACCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTT<br>GAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGAGCCGTCCAGCCTAGGTGACAGAGTTAGACCCTGTCTCAAAAAAATAAAAAATAAATAAAAAA<br>TAAAAATAAAAGAATGA</u></font>gttagaggaagagttgggattgaaagtagcaaacatgaagttcttttgttttcttgcccttttcagccaatgaaaccactcca<br>ttctcccatttctaggtttcatctttcaaacaggaaataacctgtagtactgtttaataactcatagcaatagtaataatggtaacagtaatgttgaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	2774018	2774019	1001943	0	+	1104685483937	NA	NA	SINE	Alu	AluYa5	aatatgtgaaatccagtatttcacctcctagatgaggggatgcggagttgagttttgaaggataagcagaatttaactgagtgaaatagaaagctcattg<br>tctatgccatagttgctttggtttgtatggctaagcagtagtgttcaggtattttgctctcccaaaaatatttggatcacatgatacaaacagtgaagat<br>tctgtctgctctgggttaattttggaggccaggaaaaaaatgtccatgattcatgatacgaagaatgagcttgtgctgctgaaaatgaaaaagtaagcta<br>gcatttcgtcatcctgcactacttgctgctttgaaggaatatagattcctaggtcatagaatatatacatagtcaaaaacactcct<font color="green"><u>ATAATTGATTCTTT<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATAC<br>AAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATAATTGATTCTTT</u></font>tgtga<br>accagatagagtatacaagtctttggagatcaagagagtgaaatgagaagccataactgccctctgcctagctaggctgagttccgagaggtggttggaa<br>gacagaaagtggcgtctgtccctgggtaagggctgtggcgtaactgggtgtggggcttttctctaatcatctggagaggagagcccctgacaagctggcc<br>cccaaacaaggtggctatggattcttctttttataaaagtttaaagtgtcttaaataaccttttgtgccattgaatagaaagaaaggtagtggaactcca<br>gaatacaagggattggccagaataaatggttggtatagagtagatgtcaatctttttatttaaaaattttttaagtacatt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:WRNIP1:NM:020135:3/7	
0	chr5	179369185	179369186	1001944	0	+	1104685059716	NA	NA	SINE	Alu	AluY	accacaacaagctagtctgacattaccagaaagagaaacctgataaacttattaccagtggcttagagtttccttaatgaggcttaatagaatactgaaa<br>ctgattaacggaatttaaaaaatgaaatagagaagtacattctgcaagtctctgtaaaacataagaatctcattatgtctgttatcctatttgctgtttt<br>atgtctttctttctcaataagaccataaactccccatgggcacaactctgatacagtttatttcagtttcttcacatcatgccaataaatattccattaa<br>attgagttgagtgggatgtacactattctaattagagtcactaatttgtgtccaaataggtttcacttagaaccatctcagta<font color="green"><u>GAAATAAAGAGGGCACT<br></u></font><font color="red">TACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACCGCACTCCAACCTGGGAGACACAGCG<br>AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAATAAAGAGGGCACT</u></font>ggcaccaagaaacaatgaagaagctgaaaattaaccagcagttgt<br>tatttctgtaccatcagttatggtagttagacggctttaatgaagattacaaaggttttaaataactgaaacactcatcagttgaggactgattcaatat<br>acaatgcatttatcaatattaaagagactgaggcagacagatctgtatgcactgatgtggaaaaatctccaaattttggaaaaaaagaatatatggtccg<br>tatgctctttttggaaaatctatagtattatatgttcttagtctcgaatttaagtaactgtttttggattaagttctagaaaatagtaagtggaagccca<br>gctgagccttgaaactgcaaccttgagtaagaaagaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	13459596	13459597	1001945	0	+	1104685173693	NA	NA	SINE	Alu	AluY	ttttgtcctatcttgctgtggtttgaatgtttgtgtgccctccaaaatatatgaattggaaacttaatccccaatgcaaaagtgttgggaggtgaggtct<br>aatggtaggtgccagggccataagggctctgctctgatgagtgggttaatgctgctatcaaaagagcttgcagtggtactggcatcaaaatagacacata<br>gaccaatggaacagaatagagatctcagaaataagaccacacatttccaaccatctaatcttcgacaaacctgacaaaaacaagcaatggggaaaggatt<br>ccctattttataaatggtgctgggaaaactggctagccatatgcagaaaactgaaactggaccccttccttacaccttata<font color="green"><u>AAAAATTAACTCAAGATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATTAACTCAAGATGG</u></font>attaaagacttaaatataaaatccaaaaccataaaaaccctagaagaaaatctaagcaataccattaaggatataggcat<br>gggcaaagattttatgatgaaactgccaaaagcaattgcaacaaaagcaaaaattgacaaatgggatctaattaaactaaagagcttctacacagcaaaa<br>gaaactatcatcagagcaaacagacaacctacagaatgggaaaaaatttttgcaatctacccatctgacaaaggtttaatatccagaacctacaaggaac<br>ttaaatttataagaaaaaaacaaccccatcaaaaagtaggcaaaggacataaacagacacttctcaaaagaggacatttatgcagccaacaaacatatga<br>a	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	6034775	6034776	1001946	0	+	1104685171360	NA	NA	SINE	Alu	AluYa5	tgagactctagttcactctcctctccattaatcaaaaatagaaatgctttcctgcttgcctgaaagtattgacattatactattgccccagtactgagca<br>tttgctcaaaggccattacaaaataactggaaaatggatgcgtattttggttggtttaggggaacaaattactcaagcaacatgtagttattgcgctttt<br>ttttttatctcccacactgcccaacattgtgagagatataaaagaatgatattctttcctttcaatgctataaaagattgatgttttcctttttttactc<br>tttgttgacactccagaaaaaaaaacagttaacacgagataggataaagtgtggtttttaacaggtgatataggttgtttaatt<font color="green"><u>AGAAAAGAGAAAGCAC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCAGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAAGAGAAAGCAC</u></font>actgtaggcccatagaagtggaaagatttttcttctccagaagaaaaatcctctcctctctcttgccacccgctga<br>gtgagatgctcattctttgagcctcagagatgtcctgggtacatccactcctttacttgccacattttattatactacaagctgggtggctggacatcct<br>ggtttgcccagcacagtcccagtttatgcctgttatcccagaataatcattaatagtttccccttttactctcaagagtaactcagtttagatgttaaat<br>ataattataacataaacataaactgaagaccatatagcccaggcttcttatgctgttgcattcaaaagagcacaatatagtaaccaaaagtaattagaaa<br>tgtttctt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	152123565	152123566	1001947	0	+	1104685234571	NA	NA	SINE	Alu	AluYa5	cagaccacagtgcaatcaaactagaactcaggattaagaatctcactcaaaaccgctcaactacatggaaactgaacaacctgctcctgaatgactactg<br>ggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgtgacgcattcaaagcagtg<br>tgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcaag<br>agcaaacacattcaaaagctagcagaaggcaagaaataactaaaatcagagaagaactgaaggaaatagagacacaaaaaacgcttc<font color="green"><u>TCATTAATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>TCATTAATTTTTT</u></font>tccagaagctggttttttgaaaggatcaataaaattgatagaccgctagcaagactaataaagaaaaagagagagatgaatc<br>aaatagatgcaataaaaaatgataaaggggatatcaccaccgatcccacagcaatacaaactaccatcagagaatactacaaacacctctatgcaaataa<br>actagaaaatcaagaagaaatggataaattcctcaacacatacactctcccaagactaaaccagaaagaagttgaatctctgaatagaccaataacagga<br>tctgaaattgtggcaataatcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaggtacaaggaggaactgg<br>tacca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	158717174	158717175	1001948	0	-	1104685443890	NA	NA	SINE	Alu	AluYa5	tcactgtgggcataggtgggtgagaaatatttgtcatatgctgactttgatatattgagttctctattcttcaaatcacatcacttacccagtggtaaag<br>ctggaagggctaagtttgtggtgcacacagtcttgcagctgcatgctcccatagggcaggggtcatatctgtcttctttaccatggaagatgtggcacct<br>cacacgtggcctggtatagcacaggggctcaataggtagctggaagatgatgctacaagggagtgaagaaatgcataccttctcctggtcacattgaaca<br>tctctcatctcctaatgagtcttgtcctttctacttttgcccttcgataacccattctcacacaagaaccggaatgatcctttt<font color="green"><u>GAACCTGATTTATTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>ATAAAAATAAAAAAT</font><font color="green"><u>GAACCTGATTTATTTT</u></font>taaaattagcttacagtgatggttgtacagctctctaaatacactaaaaaccattgaactgcacacttc<br>aaatgggtaaatttgtgataggtaaattctatctcaataaggctgttaaaaaaaattagattgtcattctatgcttaacacccttcactggttcctgaca<br>tttcacgtagaattcgccagactgcttatggtgatgtacaacatcctacctttcccacgggctctgcctgcctctccaacctcacctcacaccaggccac<br>agcttacctcccactcttacctgaatctgcctagcttggtcctgccttccacaatattcttctccatacttttgtactttttttcatttcttccttttat<br>ttgccccttaagatt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr5	141758656	141758657	1001949	0	-	1104685236897	NA	NA	SINE	Alu	AluYb9	tggtatatgagtactactatctattaggggggtggtttttgagttacactttttttcttttctcaattatttcatccattgagaggctcagcactgggaa<br>ttgcagacagatacacaaacctggttgagaaatccattttccactttccacacgtgtattgttgaggacattacctagtctcctggagcctcggcttcct<br>tatggagataatgggagatttaaaaaaaaagtaccccctaaacttgctgcaagaataaaactgagaaaacacatggaaactttgggtgctttttgacctg<br>acacagtaagtagaagctgttatgtcatttttctatattcactgtgataggttacacttcacaaagcaaggtttaaacactggggtt<font color="green"><u>AATCCCCATTTTT<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AATCCCCATTTTT</u></font>aaaattttgataaccctcattgtcctcatcagaccctctcctaagcccctgcttagttttactttgaaagagatattgcacaacctg<br>cattaaagtgacaaggctccaccccgttaaccaaaataatgaatgggaacaagattaggagattgtaaagtgcctgcaaatggaaggcagcctgagtccg<br>gtttttactggatgaccctgaagggacagtggtttaaacaacagcccaagtaaagtaccaggggtatttacatgaggtgcaataatgcattaaatgaaca<br>cattaaatgcaggggggcatgggagtgaagatggaatgtggaggggctgtatgtcaagaaaatcaacattactcttccaacatctgggccaaagcttcca<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	96509181	96509182	1001950	0	-	1104685083928	NA	NA	SINE	Alu	AluYg6	gatgggcagctacatgagtctaagaggaaaaagatcttagaatcatagtggagatcagtttaacaaaataaaatcagaaaaaaatataaaaagcattaaa<br>aattccatgagactttgcataagtctactgtaaggtattaagaaggagtttaccaaccccatgggaaacaagaaaataaaaaaggaagcagtttgatgca<br>tttttgggaaaggcaaatatgaaatgaaaactgatacaaagaatgaaagtgtttgtaaaactatacccatgagaaactaggaatactaaaaacaaataaa<br>gaagagaagacttaatgacttctaagataataatatatgttatgattattagaatttacacaactccagagagaacagagcc<font color="green"><u>CCTCTCAAGATACTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>CCTCTCAAGATACTTCTT</u></font>tttaaagaataatgggtgataaaatcattcttaaggggagatgtagttaaatactagaatgataatatcatagac<br>tctgcttcaatgacaccattataaagtcgattaaaattcatgtgccataataggaagatcctaaaatgagacagaaataaactataagttctctcctatt<br>cttataacttcataataatatcccatggaattactagtaaacttcaattttaatgctcattaaatataggatacattttaatgtgtaataacaggcttat<br>gtatttggccatttataatatttgctttgtcaaaactaactaaaatggcaacagatttactctcttaaactcactgtttcaatgttataaaaagtctttt<br>ttattaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FUT9:NM:006581:1/3	
0	chr6	98251341	98251342	1001951	0	-	1104685083532	NA	NA	SINE	Alu	AluYa5	aatgcaaattatcataataaaggttctcaaaaggcctgcaatgcagaaggtatttaagttttgcttaattgaatttttctccaacctaactgactgaaga<br>cccaagtttacatagtaaatctattaatatcacagggcttactttgggaaataattactactgtttcttataacagattatgttcataaagctatgaaaa<br>tgtagaaaagtttataatgcttgcgagagtgatgggtgataatatattaaagcagtatttctcaaagtgtgatctaggaagtcctaggcatccctaagat<br>actttcagaggatccatgagttcaaagatcttttaataatactaaaatgtcattttccctttcaccttcattgtctcacagatgtaca<font color="green"><u>TAGACCATTTCT<br></u></font><font color="red">ACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC<br>TACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAGA<br>CCATTTCT</u></font>gagcccgtaaaacatgtaataatgtcatcactctgactgataacgaaaagagtacttggatattttgtatttttaaaacctttagttttgat<br>ttctaatacaaataggtattgctagatataacctacattaacaaaagctttttggagtgctcaatacattttaagggttaaagggggtcctaaaacccaa<br>aagtttgagaacactatttgaaagtaaacacaggtttgggtgctattttaaaatggtggggagcctaccacggagtctgaaagtttgctttcaaaggtta<br>cctcttgggattttaatagcctttggatcaatgaaagaatcgtttctatgtatggtaaacttcagcatttccaatatgacaataaattatattttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	100407500	100407501	1001952	0	+	1104685082944	NA	NA	SINE	Alu	AluY	gatagataccaatggaaaaagaaattatgcgtttcaggaaaaaagaaattggtaaatctctctaagtaggaacctagacacacatgtccagaggagacat<br>gtccacagaaaatgtttgagatgtcccctgaatctgtagctatgctgcttggtgaagatgtttccctgtctggagccagtctacaaagactgggagaggt<br>agctatattgttaaaatgtgtagataccaatgcaaagttacaaggaaaacaaagaagcggagaaaaattgcccaatcaaatgagccaagtaaattttcag<br>aaattgatactaaagaaacagttagatactaattacctgacaaataattcaaaataaccaccataaaggtgattgataaactcattaaaa<font color="green"><u>TCCTGTATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCTGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AACC</font><font color="green"><u>TCCTGTATTG</u></font>caaaatgagagtttcagcaaagggatagaaaatataaaaaagaaccaaacagattttggagctgagaaatgcaacaattgaaatga<br>aaaattcactataaagtttcaacagcagacttgatcaagcaagagagagaatcagaaaatttgaagacaactcatttgaaatataaactaggcagaggag<br>taaaaagaaacaataataataatgataataataataataataataggtaaaaaaagccttaaagactattggacaccactgaaaggatccatatacatgt<br>tatgggcatctcagaaaaagaagagaaagaaagggacagaaagcttatttaaagaaataatggctgaaatcttcctaaatctgggaagggaaatgaacat<br>ccag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MCHR2:NM:032503:1/6	
0	chr6	104350580	104350581	1001953	0	-	1104685081983	NA	NA	SINE	Alu	AluYa5	cagagaacctaactaacttgtgtccagattcctgatatacagaaactgtgagatcataaatatgcatttttataagccactaaacttgtggtaattttat<br>gttgaatagaaaactaaaataatgtgttaggtaattttcaggttttttttgttttaattgtttttccccctccaccaagttagttaccaggatcctcgtt<br>aaacctctgctttagagacctaggataagtcaattatagtgttgaaacagaaatgataaaaaattcttagatgaaatattttctttaatctcttaaaagg<br>gagtggaacttacatccagactgtatcttcttcctgaagaccttctttgtcgtcactctcctttggtagaggagaataaagactt<font color="green"><u>CTCCTTCCCATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>CTCCTTCCCATTTTT</u></font>tgaacaaaatttcctacagaagcatttagccccaggtctcctttgactttttcatgcctttgagaatgatctcgacttg<br>acctttgactctatgttactacttcactgactttctacaagatctccaggacaggcacgactgaacaaatgcccatgtaggaaagtataagaatatgtat<br>ctttctatttcacttggatttctcataatttttttaaatctcagtatcatctcaactgaccacaaccaacaaaaatatttactttggtcaagaaagacag<br>aagatttcagcaatagttctaaattatacatggagaacaagaagaaataattctagcctataaaactaggctgaactcttggcatttccatgaatctgtg<br>gaagaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	71729316	71729317	1001954	0	+	1104685405138	NA	NA	SINE	Alu	AluYb8	agccagagcaattggacaagagaaagaagttagaaggaagtaaaagtatccctatttgcagacaacatgatcttatacagagaaaaccctaaaagacttc<br>atcaaaaagctgttagaattaataaatgaattcagtaaagttgcaagatatagaatcaacatacaaaaatcagtagcatttctatgtgccagttttgaac<br>tacctaaaaaagaaatcaagataatgatctcatttacagcagctacaaaataggtacctaggaataaacttaaccagggaagtgaaagagttctatgttg<br>aaaactataaaacaccgatgaaagaaactgaagagaaaacaaataaatggaaagatatcccacgtacatggactggaagaattaatattgt<font color="green"><u>AAAATGGTC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGGTC</u></font>atattactgaaagtgatctacagattaatgcaatcactatcaaaataccaatgaaattcttcacagaaata<br>gaaaaagtgatcctaaaatttatatagaatcacaaaagaccccaaatagcctaagctgtcctgagcaaaaagaacaaagctggaggcatcacagtaacct<br>gacttcaaaatataccacagagctatagtaaccaaaccaacatactggcataaaatcagacatatagaccaatgaaacagaatacagagcccagaaacaa<br>atttatgcacctacagccagcttgatctttgacaaagatgccagaagcacacactgaggaaaggacagtctctgcaataaatggtgctgggaaaattgga<br>tactcacatgcagaagaatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	72580495	72580496	1001955	0	+	1104685405373	NA	NA	SINE	Alu	AluY	gcctgggactgagtgagatctatgcaatagtatagtcagagaccaggtgacaaaatgtgtgccacccaccagatggggagagagaagagagaaatcacta<br>aataaaccaaggaggggtcactcagggagactaaagtgctcccaaactatctaacatcatggaagccaaggaaggagaatgtcaccaacagggtcatgtg<br>ataggcccagtccaatcagaaaaatttgtcatttaatatcctgctagagaaaaaaagggttaaccagggttggacataggtgcagtcaacattgtagaag<br>aaaaaaaaaaaaagagtgctatggtttgaatgtggtttcttctccaaaattcatgttgaaacctaatcacaaaggtgatggtat<font color="green"><u>AGAAGATGGTTGAGTC<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAGATGGTTGAGTC</u></font>atgagggaacctccctcatgaattgattaaggccttataaaaagggcttgcaggaatgggttcactctcttccattcttct<br>gctatgtgagaacagagttcaccccatctttctcttccaccttctcccatgtgaggatgcagcaagaaggcccttaccagacaccttgaccattcacttc<br>ccagcctccagaactgtgagaaataaatttataatgtttataaattacccagtctgtggtattttgttatagcagctcaaacagactaagacagggagca<br>aagtagcctatgaatgaaggcttaatctaagcgggagatcctggagcccaggttggttagctgtcattctattcacacaggcaggagtagatgggcttcc<br>tgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	78843184	78843185	1001956	0	-	1104685407009	NA	NA	SINE	Alu	AluYg6	atattcctgggacattgcccttgtgcataatgttgtttaagacttctccccgcttgttcccagagctctatgtctagcgtgccttcttctgggaatgcct<br>tcccatgggttatgggaaacaagaatttgcattaggtcccttaattgagcctgcaaaactgaggctctactagctttaagcagctgtttcaatactttta<br>tatgctgttgacgttgagctgataactattgtaccatgatgaaaccgtagcctgaacaattccctcgaacttggaaatcctgagtgggcaccaattgtgt<br>ccagaattggttccttccagtgggtttgtggtctcattgacttcaagaatgaagctgtggacctgtgcggtgagtgttacagctctt<font color="green"><u>AAAGATGGCAGGG<br></u></font><font color="red">TCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTGGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGTCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAACGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATGGCAGGG</u></font>cccaa<br>agagtgggcagtagcaaggtttattgtgaagaacaaaaaaacaaagctttcactgcatggaaggggacccaagtgggttgccactgctagctggggtggc<br>cagcttttatttccttatttgtcccctcccatgttccatttctgtcctatcagaatccccttttttcagtcctccctgcagttggctacttttagtatcc<br>tgctgattggtgggttttacagagtgctgactggtgcattttacagagtgctgattggagcattttacagagccctgattggtgcattttacaatcctct<br>tgctagctacagagtgatgattggtgcattttacaatcctcttgtaagacagaaaagttctccaagtccccactggactcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	74341926	74341927	1001957	0	+	1104685405862	NA	NA	SINE	Alu	AluYb8	cacaggaaccatgttttatttttttcctcttattcatttttaagtcctcagctgacaaagaacctaggtcatagtaaagtttcaaaaaaaaatgtttaaa<br>gaatgaatgagtagatgctgcacatttcttgggtccaagatttaaagatgcagcttcacgtaacacatcattttacaacactgtcaactataacgtcatg<br>tgctt<font color="green"><u>AAGAATGCAGTCTGGTTGTACAAGGTGACTCATGCCTGTAATCCCAGCATTTTGGGAGTCTTAGGCAGGAAGACTCCTTAAGCCCAGCAGTTTGA<br>GACCAGCTTGATCATCATAGCGAGACTCCGTCTCTACAAAAAATAATTAGCTAGGCATGGTGGTGTGCACCTGTAGTCCCAGCTACTCGAGAGGCTGAGG<br></u></font><font color="red">GCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCACTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGT<br>CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGCAGTCTGGTTGTACAAGGTGACTCATGCCTGTAATCCCAGCATTTTGGGAGTCTTAGGCAGG<br>AAGACTCCTTAAGCCCAGCAGTTTGAGACCAGCTTGATCATCATAGCGAGACTCCGTCTCTACAAAAAATAATTAGCTAGGCATGGTGGTGTGCACCTGT<br>AGTCCCAGCTACTCGAGAGGCTGAGG</u></font>tgggaagactgcttgaacctgtagggttgaggctgcactgagctgtgatggtgccactgtactccagcctgggc<br>actgagctagactcaaaaaaaaaaaaaaaaaaaaaaggaatgcaatctgggcttctcctcctaactctcttgcctctgaatattcctttttccgaagtgt<br>gtcgagaaacaacctaagtttggagagatta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC17A5:NM:012434:6/11	
0	chr6	74668019	74668020	1001958	0	-	1104685405939	NA	NA	SINE	Alu	AluYa5	catgaaaaaatgctcatcatcactgtccatcagagaaatgcaaatcaaaactacaatgagataccatctcacaccagttagaatggcaatcattaaaaag<br>tcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaacccttgtggaagtcagtgt<br>ggcgattcctcagggatctagaactagaaataccatttgatccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaaga<br>cacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaacgatagactggatt<font color="green"><u>AAGAAAATGTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCCAGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAAAATGTGG</u></font>acatatacaccatggaatactatgcagccataaaaaatgaagagttcatgtcctttgtagggacatggatgaaactggaaaccatcagta<br>tcagcaaactatcgcaaggacaaaaaaccaaacaccacatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacat<br>cacactcgtgggactgttgtggggtggggggaggggggagggatagcattaggagatatacctaatgctaaatgacgagttgctgggtgcaccacaccaa<br>catggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataattaaaaaaaaattttcaatgcct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	32641447	32641448	1001959	0	+	1104685374809	NA	NA	SINE	Alu	AluYa5	gcccaagaccatgggaacacacctcctgtattggcgtgatctagatgtgagacctggagtcaaaggagatcattttggagctttaaaattgactgcagct<br>gggtgtggtggctcatgcctgtaatcccagcactttgaaagaccaaggtgggcggaccacgaggtcaggagatcgagaccatcccggctaaaacggtgaa<br>accccgtctctactaaaa<font color="green"><u>AAAAAAGTTAGCCAGGCATGGTGGCAGGCACCTGCAGTCCTAGCTACTTGGAAGGCTGAGGCAGGAGAATGGCGTGAACCCA<br>GGAGGCAGAGCTTGCAGTGAGCAGAGATGGCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGATTCTGTCTCAAAAAATAAATAAATAAAAATAAAAA<br></u></font><font color="red">AA</font><font color="green"><u>AAAAAAGTTAGCCAGGCATGGTGGCAGGCACCTGCAGTCCTAGCTACTTGGAAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCA<br>GTGAGCAGAGATGGCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGATTCTGTCTCAAAAAATAAATAAATAAAAATAAAAA</u></font>aataaaataataaaat<br>aaaaaaatttgactgccctgctggatttcagacttgtgtgtgccttgtaacccctttgttctggccaatttctcctatttggaatggctgtatttaccca<br>atacctgtacctccattgtatctaaaaagtaactagcttgcttttgattttacaggctcataggtggaaggacttgccttgtctcagatgagactttgga<br>ct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	49561930	49561931	1001960	0	+	1104685505702	NA	NA	SINE	Alu	AluYb8	tgtaatcgcaagtactcggcaggctgagacaggagaatcgcttgaacccgggaggtagaggttgcagtgagccgagattgcaccattgcattccagcctg<br>ggcaacaagagcaaaattttgtctcaaaaacaaacaaacaacaaacaaacaaacaaacaaaacaaaaacaaagaaattaggaattgagaaaacagctaga<br>acaggaaaaggataagatgagcacatctcagaaagacataggaaccagcatgaatagacttgcactggcaaatctgggacaatttcaccgtcacaacaaa<br>tgtttttataatgtattgtaaataatttaataaaataaaaaaatcatgaatctatagggatataagttaataaatgaatgcatt<font color="green"><u>TCCTCCTTAATCTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>TCCTCCTTAATCTTTC</u></font>tgggacattgacatagggatgtggaagatttcatattgctttcacacaaaataaaat<br>gaattataaagataaaaacaagaaactttaaagcagagaaacacgctctccatcaatgattgaagtgaataatcattaataatggaacaagttcaaaaag<br>aattccacctggtaggatgcaattcagtatataggctcacttttgtgatattgctcttaaagttgtataacctaaatctaatcatggggaaacatcagca<br>aaacccagagtggggaccttctatgaaataactgcctacattcttcaaaagtgtcaaggtcatgaaagtcagagaaacaccaaggaactgttccagactg<br>aaggactaaagaggcaagaaactaggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	56702723	56702724	1001961	0	+	1104685503785	NA	NA	SINE	Alu	AluYa5	ctaacttcctgctggggatcataaagggtcaccctcactgcctaaagaataggcactcaagattgctttcaatctggtacagcataaccctccatcattc<br>atccatatccatcttcctacaaattctaaccaatcctttccctgaaacctgcggtgcacttcagccaacgatcaaaatgattttggcaattatgtcaatg<br>aaatggaacagtcatgctagtttctcctcttggagttttcctccctggtacttttcaccttctcacagggtgaaatcccatttgaccccaaatacaaagc<br>ttttccccagcctaagcagaattatttgcttcttcttttgggagagatgaagcaagtcagaaaacaaaagcaaacaaaattgcatt<font color="green"><u>TCTGCTTGTCCTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTGCTTGTCCTTT</u></font>aaaaaaaatgaataagaaggggtctcatttgatcacttactgaaacaatgacatacttcagcaaataat<br>tacctgaaattcctccttggacataggtagaatgtaatccctgaaatattaagagctaagaaatggacacagaagtctttcctgttttttattcaaagcc<br>attatagagagacttccatgaaacagaagcatctgtgtttagttaatatgaaataacaaacattcgaaactacaaatcatcttctcttcccaattagtcc<br>accaggtcacatgatttgggtgtgttcttgtgcacttttatactcagttgtggaactaaaacagaaatgaacatgacagcctagatattccatcttgtta<br>tcacctctatagcttca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DST:NM:183380:1/94	
0	chr6	64836243	64836244	1001962	0	+	1104685200449	NA	NA	SINE	Alu	AluYb8	ggtacacgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttgcacaacaggtgctggagaggatgtggagaaataggaacacttttac<br>actgttggtgggactgtaaactagttgctggtgggattgtaaactagttgttggtgggactataaactagttcaaccattgtggaagacagtgtggtgat<br>tcctcaaggatctagaactagaaataccatttgacccagcgatcccattactgggtatatacccaaaggattataaaccatgctgctacaaaggcacatg<br>cacacgtatgtttattgcggcactattcacaatagcgaagacttggaaccaacccaaatgcccatcaatgatagaccggatt<font color="green"><u>TATGTGCCACATTTTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT<br>TGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TATGTGCCACATTTTCTT</u></font>acacca<br>tggaatacaatgcactattctcttctacatcagttttcctctcaagtctcctcaagatttgtgcactttctgtgactctagcatattgcagttactccag<br>tatcaaatgttgtgttaaaattctggcctgtagaaatgatcactcagatatcttactaatttgttggcattttaaggttcttccaccaaaacatcacgtt<br>ctgcacatcgtttttaaattcttattttctctgccaggtccagctcctttcttactgaccagagctctatcagcttcttcacacttctcctccttaactg<br>cttatctttcaaagagcagttcaagtcccctcttcactgtcttcctgcaatcatttaggtccttgtcaatgtctgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EYS:NM:001142800:31/43	
0	chr6	68311312	68311313	1001963	0	-	1104685199364	NA	NA	SINE	Alu	AluYb8	attaaatataacaaaatgcattctcctagccaaaatcaattagtaatggtgaaaataataaatttgataggatcaaaattagagaaaatattattttggc<br>tattatttaactgaaatccacaaggatgctgatggttagagccagttaaggtacatttcatatgtcctaaagagggtgtccccccatgaatgaacgctct<br>tcagaatgtcaagtactgtctatgtctttaaattcaattttgtgttgtactagctaattctggaaaacaagaaaagaacattttccatagtacattccat<br>tctattttagtgccataaaatagaattctaagcattctattataaggcagcaacaacaattagagatcattttaaaacttcatt<font color="green"><u>TTTTTGCCAGTATTTT<br></u></font><font color="red">ACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>TTTTTGCCAGTATTTT</u></font>taaaaattcctaaaaaattatacagaaaatatcgaggccctgtacgaatagggcaacaaaattattaaagt<br>aaataaatgtacctgagttatagtgagaggtgtgcagtttttgtggttttgaaggcaatttcaaaatatcaattctgttaaataaatataggaatttact<br>gaaatgacaatgataattcaagagtggtttcttgaaattgttataagtgactcataagatcaaaaaaagaaatacacatcttagaattttaattggattt<br>ttaaaaaatatccacaaattattgaagactcaaaataaaattagtataatgaaatcaactagcattataatagtagtaaacaaatagaactgagaaaagt<br>tagtacatcaatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	66816125	66816126	1001964	0	-	1104685199925	NA	NA	SINE	Alu	AluYb8	gaatgtaaattagtccaaccattgcggaagacagtgtggagattccttaaggagctagaaccagaaataccatttgacccagcaatcccattactgggta<br>tatacccaaaggattataaatcattctactataaagacacatgcacacgtatgtttattgcagcactgttcacaatagcaaagacttggaacaaaaccaa<br>aggtaaagaaaatcttaaggctttcagacaacagtgatacatattggggaacaacaattcaattgacttggagaattgtacattcgtaaccctgaagcca<br>gaggacagtagaataatatttaaaattctgaaagaaatggactgccaactagcagttctatatccagcaaaaatatattttacacataagaa<font color="green"><u>TTTATTTC<br></u></font><font color="red">ATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAA<br>GCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>TTTATTTC</u></font>gattttatctcatggagaataattgagaggattcatcaccaatagatctgttctgaaagaaatgctacaggaggttttttaggc<br>tgaaagacatttataacagaaaaacaaaaaaaaatgaaactttagaaattaatgaattctactgcatgtaaattataaaatacatttacaacgatttcta<br>aaagctctaggatactattgggttgtgttgtaagtgaatgtttatggaagaaactactaaactgctttctgaaacttgtgtaccattttacattttctcc<br>aggactctgtaagttccagttgctccggatcgtcgtccaacaatggttttgttagtttgttttagccaatcaaattggtatgtagtgcatgtacaacctg<br>tcagtctt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	69642783	69642784	1001965	0	+	1104685054419	NA	NA	SINE	Alu	AluY	tttaaccaaatatagtatagacaaacataaatacatgtataagacttttaacagaagacaattataatgtgaaaaagagaagaatatttttccttaaata<br>ttttcctagattatacttttttaaggtgttaaggtagtctgaataaatacaggtaagtgtcacacaatgaaattttacaaaaattaagctttacttataa<br>aagtgttccctgtatttgtctttaagccagaaaaaagactgtaacatataaataatataaaatttgttaacagtaatttgagaacaaagaataaggcaaa<br>aacatacatttaaataataataaaagacaatatatttttatattaatcatggagaaaaaagcaaaggctatcacacttttatattt<font color="green"><u>GAGAAGTAATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGAAGTAATTCTT</u></font>aaatgagtaaactggcctcttcaatcaatatgatcagtaaaagattgtaattaaaagcaatctttct<br>acagagtgataaagtgagtgtgacttttttaaaaagagtaacatttgataaagtagcatagtttggatataaatgatggtgctctaatagcctatcatgc<br>aatctttatttattattaaggaatataaaattaaatgatatcatataatatatatatttaatatagacatctaaattaaatgccaataagatggcttaag<br>atatcctagttacattttcttatgcttaagcatcatagtcatcaattaatttataaacatgtttagaaaagcagtctttcattaccgtgaggaaaatagc<br>ctaaatttggactatgtag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:BAI3:NM:001704:4/32	
0	chr6	30981083	30981084	1001966	0	-	1104685373780	NA	NA	SINE	Alu	AluYa5	cttacatccattacctaatacaataaaataaaataaacaagtgagtgggaggtgagaagtgacatagcaagtgtggggaagtccttcaagaatgggggtg<br>aggggccgggcccggtggctcacacccgtaatcccagcactttgggaggccaaggtgggtagattgtctgagctcaggagttcgagtccagcctgggcaa<br>cacaatgaaaccccgtctctactaaaatac<font color="green"><u>AAAAAATTAGCTGGGCGTGGCGGTGTGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATC<br>GCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCAGCACTGCACTCTAGCCTGGGCGACAGAGCCACACTCCATCTCCAAAAAAAAAAAAAA<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAA</font><font color="green"><u>AAAAAATTAGCTGGGCGTGGCGGTGTGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGG<br>AGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCAGCACTGCACTCTAGCCTGGGCGACAGAGCCACACTCCATCTCCAAAAAAAA<br>AAAAAA</u></font>aaaaaagaatgggggtgaggaggagagtggagggagaggtggtggctgaggagtgatgcggggacgttaggatggacatcattcagtgtttggt<br>ccagggacctctgggatcacactgtctgaagaacccacgccatcccaccaagcttactgaatcaagatcttgcttggtggggtgtcagggcctggaaacc<br>caagtttttaatcgtctccttggatgatacttgtgc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	32773435	32773436	1001967	0	-	1104685374938	NA	NA	SINE	Alu	AluYa5	gaaaagtccatcagactaacagtggacctgtcagaagaatctctacaagccagaagagactgggggccaacatttattattcttaaagaaaataatttca<br>acccagaatttcatatctggccaaactaatcttcaaaagtgaaggagaaataagaaccttttcagagaaggaaatgctgagggaatttcattaccactag<br>acttgtcttacaagagctcctgaaggaagcactaaatatggaaaggaaagacttactagccactacaaaaacacactgaagtacacagaccagtgacact<br>ataaagcaaccacataaacaagtctgcaaaataaccagctaacatcatgatgacaggatgaaatccacacatatcaatactaatcttaaatgtaaatg<font color="green"><u>GG<br></u></font><font color="red">GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACGATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGTAAATG</font><font color="green"><u>GG</u></font>tagtgccccaattaaaaggcacagagtggtaatctggataaagaaccaaggcctattagtatgctgtcttcaaaagactcat<br>ctcacatgcagtgacacacataggatcaaaataaacagatggagaaaaatctaccaagcaaatggaaaacagaaaaaagcaggggttgcaatactagttt<br>cagacaaaacagactttaaaccaacaaagatcaaaaaagatgaagaagggcattacataatggtaaatggttcaattcaacaaaagatctaagtattcta<br>aaaatatatacctccaaaagaggagcacccagattcataaagcaagttcttaacgaccttcaaagagacttagactcccacacaatgatagtgggagact<br>ttgacaccccattgac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	44798622	44798623	1001968	0	-	1104685506806	NA	NA	SINE	Alu	AluYb8	gaaagaacactgaggaatgacacttggaatgtgccactgttttgtcatccctgatacactgatctggagtgaactgcatagcagcataactaaccaaaga<br>aatttcagccagggcgccaaagcctgacaagcacagtaaatcttcttaagcaggatatttggagagaaggttttcaagttaattgaattttatgattaag<br>agaaggttatctagaaaactatatttgtttcacctcatgttgatggaagtctttctaaaagggttaagtctactttccatttttagtataattaattata<br>aatgtggtttaattatcttttaagatgaagatttcactgcctccatagcattatcttgatcgtaaaaggttattctgtatttcttaaaatatggc<font color="green"><u>GCCAC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAATTATGGCTG</font><font color="green"><u>GCCAC</u></font>tgttcaaggttaattcattgggctggaagtatacagactccagaactgcttcagagttattag<br>cctaagggggaaaaatccctaacctgaattttatgattttctttgtttttctgaaaagattgacggttatgaattctctggatgtgactgttactagttt<br>aaatgattaaaaatgtgccagggaaagggaaattttattcctaagtcctgaattttagttctgctcccctctgggtcttatggtggaattcaggatgtta<br>cagagaccctgtgtgatccaggtctcccaacactgaaatgcaaaatatgtctcttggaatgaaaagcatgcaacttttctttctttactgaaacgtatta<br>attattgcacttagaatccattttcccatttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SUPT3H:NM:003599:10/11	
0	chr6	31439016	31439017	1001969	0	-	1104685374124	GATGATAGCAGCTCTCCTACGAA	CCCAACTATCTCCCTGTCCTC	SINE	Alu	AluY	tgccagaggatgtggtcccttccaaagtcctcccacatgggggagtttgcacagggaccttgtacccttggcccagaggtggggtggcatcctcactcct<br>cactgtggttctcagacctttctgcctccttccttcctaagcccccaaagctgtcatcagattcaggccccactcccctcattgcagccattccctgtgg<br>gccccaggccgttcctctcagtcctgactcttgtagttcctggttcactatcgccctctccagcagtgctgtctccttgatcctcggtgacttcaacata<br>ctcagatgtgatgggccgagtaatggttcccaaagacatccaatctcaatcctgggcacccacgagtaggttgcattacatggc<font color="green"><u>AAAAGGGAAAATACTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGGGAAAATACTG</u></font>tgtgatgaagattaaggaccttaaaattgcaagattattttggactatctgtgtgggcccgatcaaatctcacaagccattaaaa<br>gcagagaagctgctctggctggagtcagatgctgcagaggaggaaggcagaggagacaccgcagaagggggaggtcagaggttccaagcaggaggattgg<br>atatgttgcatgggatatgtgtgaggaactgagagagggctctaggagctaagggtggcccctggacaggagccagcaaggaagtggggatctcagtcct<br>atctgcaaggaagtgaattcagacaagaacctgaatgagcttgacagtagatttttcctcagagtcagaaggaacacagacctccccttaccttgattt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1697	1399	NA	exon:NC:HCG26:NR_002812:1/1
0	chr6	40046910	40046911	1001970	0	+	1104685508110	NA	NA	SINE	Alu	AluY	caaaatgtgtagcttaaggtgaaaaattcttaaacatactgggtcactaatatactttcctctaaggtggatactgaagatttgaagaccataatgaata<br>aatatggacaaatacatagaacactgtacttggtaaatgcacaccacgttctgttcaagtaaatgtggagcttttgccaaaataaaaggtcaggtagaaa<br>taaaacttcaagagataagttatacaaagtgaactctgattaaatgcaaatagtctagaaatgcaagtaattaaaaaatcatcctatacttgggaattaa<br>gagtcccacttacaaagtaatccataggtcaaaaagaaacttagtgaaagaaaatgttttggggtgaggtattgcttctgttt<font color="green"><u>TCTACAGACTACTTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>TCTACAGACTACTTTCT</u></font>tgaagagaacattcgtcccttaagggccaggtaattacacaattctatcttttgagtcctcagaactgaggttgcaaggcaac<br>caagtgaattaagttctgaagaatgctaagcccctctgagcagacagaaacagcacggtattacctttggcagaacacaggaggaagagaggcagcagca<br>gaggtagctaagtagcagtcagggaagatgtgacggaattcttaaaggtagcctgtggctaaagtttgaaataatcgggggctcaaaaaatgaagagttt<br>gcactcaagctctttgccaacagcccacactggctgcgcatgaagacaacaggcagagaccagagtgcctggcaggataggactagctgctggtggccag<br>	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	47312790	47312791	1001971	0	+	1104685506267	NA	NA	SINE	Alu	AluY	gcccaaaagttgacctaattgagaaaagagttcaagagagcctgagtagagtttagccaaggagataatcttttgtcaatgtataggtggatgaatggat<br>ggatggatggatggatggatggatggatggatggatggatggatcgatggacaaaagaacttcctcttaacccccacaagtccctttgggtacaaattgt<br>ttctttcctgttgtctatttaccacattttataaatctttattaggccttatacccaagagacagaatctcctaaagagaagatatcatgtaataataaa<br>agcagagaatgatgggtagacagggaagaagaaggagaccagctatttataaccatcaattcccatctaagaagctagattctattaaat<font color="green"><u>GGGGCTCTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>GGGGCTCTTT</u></font>gctgttctgttggactcttgggtcattttaatatccaatggatctgagagtataggctgctgggaactggataccttccca<br>taaaacaaacaggggaatataagggaggagaaaagatactaggaggaggagaagaaggtggtatgactggcagtctgttctgggtgagagaatattacta<br>aaaagttgctgttaatggtaaggctggataactttttagatttgaagatatttgtcttcctgcaacataaacctttttctgtgtccctcagtcttcaatg<br>agccctatgccacatgcttgaagtgaaagggactgaactccctattaagtaggaagaagagagctttgccagatgatgaatcaacctagaaactgaggaa<br>aagcaggag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	3090715	3090716	1001972	0	+	1104685391232	NA	NA	SINE	Alu	AluYa5	cccagaccagatttctcagagcatagccctggagtcaaggctgcctgttgacacagtattcctgccccccgttatcccagctggcctctcctccatacag<br>aggttggaaaagacaaaggaaactccacacgagtcaacacggaccttcccaaacatggacagagatcagcagcttgaaagggtgggacttagatgaacaa<br>attggacaatcatctcccaagggcaggaagggaagaaacaatgatgagaagggaatgaaacataatgatccaaaaagatcctccaatgagaatccgcaga<br>gagattcgagcagagatcacatccatcaaataagaacaaattactatgaaacaggctgcctgaataaaggaacaggtcatggaaat<font color="green"><u>AAAAATAGGGTTGT<br></u></font><font color="red">TCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAA<br>CGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATAGGGTTGT</u></font>ccgaataataaaataaaatttaacagacagtagaagggctggaagaagatgtctgtgaggtctatctgctgggctggaaagc<br>gagaactaaataaaacccaaaaagaaagaagaagtttgagagaaaagttgagatctaaatgatgaattcagaaagaccaatgtctacttagttccagcag<br>gaagagagaaggtggagggaggaattaatcatgagataacgataatatttgtccgagctgaagaatgacatgattcttcatgaggagagagaccacggag<br>ggccaagtaggatgaatgaaaaagatctgtacctagatatagcctcatgacatttcaggaaagaaaaaaaaaaagatggataatgagaaggctctaaaat<br>cttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	165186946	165186947	1001973	0	-	1104685087006	NA	NA	SINE	Alu	AluY	tctggcaacacattaaatatttattacatatttagctttgaaatctaaaatatgtaattatatatttacatataataactacatattacatatgtaaatt<br>cttacatagttagctttgaaatccgctgaccctcagcatcaaagccgtccctggcccatcgtaagtagtcaacacatatttgttaacggaatcaataaat<br>gacctcacagtagtaactacctctttgaatggcaagatattaatccacagagttgagcccttgaaatctgaaatagcctttgtctcactaaagtgcctgg<br>attttgagagctggccccttttggttgtttttctgatttgaattactacacacacacacatatatgaatgtccaatggtcaaaat<font color="green"><u>CCCAAAAGCCTTCTT<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAATACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>CCCAAAAGCCTTCTT</u></font>attcaggaa<br>ttccccaccatctttactacttcttggattcgtttctttaccaaaacatgatgtgtttaatttggtcatttaacagcatgtctaattaccctacattact<br>gcaaacctgtaaatgcagagaacaacgtaacggttttaaacttttgtttctgcatggttgaaaattttgtctatagcaaaaataataacaaatgcaacga<br>aaggatggagttagtgttgcacactgtttatggaatatctgtagagatagtagatagagagcaattataaaaataattggaacagaggcactggttctcc<br>actcaaccattctttactattattatggtatctgtatgcatagtgtctctgcctgctaacagaccacaaccaatcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	160484026	160484027	1001974	0	-	1104685155827	NA	NA	SINE	Alu	AluYa5	accacacacgcattcacattttcaagcaaaaagctttacaaatggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggt<br>ggattactaggtcaagagatctagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcaggcaccc<br>tgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcagaggttgcagtgagccgagatggcgccattacactccagcctg<br>gcaacagagcaaaactcggtctcaaaaaaaaaaaaaaaaacttttacaatttttggttaggtaaataccagctataaatgggcat<font color="green"><u>GTGGAAATGGCTTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>GTGGAAATGGCTTTT</u></font>atgattttgtttatatataatacaaatcgcctggcaaacagctttctaggaaagtctaggtccccgaataaagact<br>tgcttcatcaaacaacacaaaaccaaaccccacattagtgtcttcaagcatcagacgccaaaatcccatcaatccaggcacacaaggaaaatgtcactcg<br>tgaaattagcaatatgcttcagtaaaaaaaaaagctcaaggaaaagaaattatcctccccctagcgtgtgtctcatgaccccagctatggctgttatcac<br>acggtctcatatctaaggcatcgttcagaacgtctgctactctatacatttaaaatgacttgtagggacaggcccagtcctaccttccactctgacaacg<br>ggacaggct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:IGF2R:NM:000876:26/48	
0	chr6	167124813	167124814	1001975	0	+	1104685325725	NA	NA	SINE	Alu	AluYb9	cagaaaactcttagatgataactgctctactttagccaaacaacacagaaaaaccttggccccaccttcacccatgccagtaaaggctgtgtgggtggcc<br>tagaattccaccctcattagtctgtaaggaggtgccccaacatccccccaggggtggtgtccactggtggtggtggaggacactgaggactctgaccact<br>gcccaggggtaacaaggccataagtcttcttgggattagtggaggccacagagggagctggagcctccacccccacaaagcaggaatagccccacaactt<br>ccttcattgcagtaatgaggtggtgcccccaattcctaggttggagtcacgtgagacccagtctgttaaaacagaaagcttatat<font color="green"><u>GAGACTCTGGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAGACTCTGGATCTT</u></font>taacatagtcccccaaaagtctaggttccaatttaaaaaaaaatcactaattacacaaagaaccaggaagatctcaaaca<br>gaaaaaaaaaagatgccaaaccaagatgacagaatgttagatatatctgacaaagatttcaaagcagccatgataaaaatgcttcaacaagcaatcacaa<br>accagcctaaaaccaatggagaaacagagcctcagctaaggaatgggagatataaagaagaaccaaatggaagttttagacatgaaaaatacaaaaccaa<br>aatgaaaagtgcacagactgggcttaatagctgagtcgagggaacaaaggaaagaaacagtgaaatgaaggatgaagcaacagatgttctcacctcaaaa<br>cccag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RPS6KA2:NM:001006932:2/22	
0	chr6	141134068	141134069	1001976	0	-	1104685226174	NA	NA	SINE	Alu	AluY	ataaagttcaatttatcaatttatcaagttaaataaaatttcaatatcaagttaaataaaatttatcaattttattggtttctcatggttttgtttcatt<br>tctaagaatgcactgctaaatctaaggtcaggaaaattttcctctgcttttcttctaagagttccattgctttaactcttaacatttaggtcacagattt<br>attttcagttaatttttgtatacagtaggaggtaagagtttaattttattattttgcatgtgactattcagttttcttagtacaacttgttttttgtttg<br>ttttgtttgcttgtttgtttttattagagacaaattagtggttcgtatcacttgttgaaagactttttctccaatgatggaatttggcactcttt<font color="green"><u>TTTCT<br></u></font><font color="red">ATTAGTGGTTCGTATCACTTGTTGAAAGACTTTTTCTCCAATGATGGAATTTGGCACTCTTTCAGAAAATCAGTTGACCGGCCGGGCGCGGTGGCTCACG<br>CTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAA<br>AATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA</font><font color="green"><u>TTT<br>CT</u></font>atcagttgaccatagacacatgggtttatttctagagtttaaattctattcctttgaactatatgtctgtcctcatgacattaccacactgtcttgat<br>tactgttgctgcatagtaagttttgaaatcaggaagcataagtcatcctattatgttcttttaaaaatttgtttattttgggtcccttgcaatttcatac<br>aaattttagaatcagtttgtccatttctaccaatcaatcagttggaattccgacagagattgagttaaagttgcagatcaaattgaggaatattgatatc<br>ttaacaatattaagttttctggtccataaacattggattttttaaattcatttaagtatttaattttttgaataatgctttataattttcagagtat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	148998203	148998204	1001977	0	-	1104685224614	NA	NA	SINE	Alu	AluYb8	aactttgccttctggctagattcgttttacccttactgatatttcctccccttatttgtagtttttgtttcaattatccatggtcacctgtggtctggag<br>attgatgattacagtgcagtaagatattttgagagagaaagagagaccatagtcacataactttattttattttgttttattttattttattttatttta<br>ttttattttattttattttattttattttattttattttatatttgagatggagtctctctttgtcacccaggctggagtgcagtggcaccatctcaggt<br>cactgcaacctctgcctcttgggttcaagagattctcctgcctcagcttcccgagtgactgggattacaggtgcccaccaccatgcccggctaat<font color="green"><u>NNNNN<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTGGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCC<br>CGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGTTAATTTTTTTTTTTTTTG</font><font color="green"><u>NNNNN</u></font>ttagt<br>agagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatg<br>agccaccatgcccggcccacattcacataacttttattacggtatattgttctattttattattagttattattgttaatattttgcttgcttaatttat<br>taattaaactttacattaggtatgtataggaaaaaacggtgtaaacaggatttcgtactgtgatggttaatattgagtgtcaacttgattggattgaaag<br>atgcaaagtattattcctgggtgtgtctgtgagggtgttgccaaaggagattactatttgagtcagtggactgagaaaggcagacccacc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	150910877	150910878	1001978	0	-	1104685224164	NA	NA	SINE	Alu	AluYa5	ctcagcaagatgttctgagctcctatttcttttaggaaatgtatccttccaactttaggaacagaagggatcttttaaaactattcatcaagttaaaaaa<br>gaaaaaaaaagaagataggccaggcgcagtgactcacacctgtaatctcagcattttgggaggccaaggtgggcagatcatctgaggtcatgagtttgag<br>accaccctggccaacatggtgaaaccccctctctacta<font color="green"><u>TGAGACAGAGTCTGCTCTGTCGCTCAGGCTGGGATACAGTGGTGTGATCTCGGCTCACTGCA<br>ACCTCTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCAAGCGGCTGGGATTACAGGCGCCCTCCACCACGTCCAGCTAAGTTTTGTATTTTT<br></u></font><font color="red">AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGAGACAGAGTCTGCTCTGTCGCTCAGGCTGGGATACAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTT<br>CAAGAGATTCTCCTGCCTCAGCCTCCCAAGCGGCTGGGATTACAGGCGCCCTCCACCACGTCCAGCTAAGTTTTGTATTTTT</u></font>ggtaaataaataaataaa<br>caaaatttaaaaaagaagatagccttgatatgggctaactaaatgaacaaatatcttctgtaatcttataacgaaaaatataatacataaagatgaaatg<br>accatataccttctaggggtactacggtctatttccttccttcctgttcatctactctggctttatagttcaagtcctcctcacttaagcctccgcctgg<br>gatatgcccactttcaggct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	155051659	155051660	1001979	0	+	1104685222969	NA	NA	SINE	Alu	AluY	gtaatagattccactagataaaacagagaattgggtaaagcaatagaaaaattaagcagataagcagagattacattgcctcttaggttttctattttgg<br>ttcaagtccctcccttggactcagctacatttctgacttttggttacatgagaaaaacctgtactgtaataatgaattattattttatgcttaaactagc<br>tcaaattggctggttatactggcaatcagaatcctagcgtacatacatacacacacacacacagacacacacacacgggtactgttttcacactctgtat<br>gtagttgtgtataaattttgtatatagtcattgcactggaaccccaggctcccctctaacccttctcttgctttatcgccttcttatatt<font color="green"><u>ACACAATCTT<br></u></font><font color="red">GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>ACACAATCTT</u></font>taggctgggcgaggtggctcatgcctgtaatcccagcactttgggaggccgaggagggtgaatcactggaggtcaggagtt<br>tgagatcagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgaacgtggcgtcggttgcctgtagtcctagctacttggga<br>ggttaaggcaggagaatcgcttgaacccggaaggcggaggttgcggtgagccgagatcgcgtcattgcactccagcctgggcgacaagagcaaaactcag<br>tctcaaaaaataaataaataaaaaataaaagccgggcgcggctataatcccagcactttgggaggccaaggcaagcggatcacaaggtcaggagatcaag<br>accatcctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	159204431	159204432	1001980	0	+	1104685156227	ACAGACCTTTGGCTTGGAGTT	CTGCCTTCCTCTACCAGGACT	SINE	Alu	AluYb8	acaaacaacgtaactaatgcgaggcaattaagatatctcctgcagactcccagcatttagctcaagtgtctacacgtacaggctattgtttacagctttt<br>caagtctctcatcacaccatcaatattcttggttggattagcacaaacctcgagccaggagtcgagcactggctgggctgcctgcgaagtagctatggat<br>ggatgtgctggtacctgcaggcagctggggtggaatctcagaggcagggggaggagaggcagcctctgctctattctgccttcctctaccaggactgagc<br>ccactatcggccccgcccaccatgagagaggataacccacacctctggaccaccctttgagagggccacagcagtccaaaagcccttt<font color="green"><u>AGGAAACTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGGAAACTTTTT</u></font>ctttgggatagtaagttgctaaataaatacttcaaaaataacccacaaatttgccattttgccattgttt<br>ccaggcccaccaccctacctactgaagataactgtgaacttcaactcacttatcatctttctcataaatattcagtccaagggcatcaactccaagccaa<br>aggtctgttcctttcttgttttttatctcgaaatagttgattccatacatttccaggtcctgagcaatcttcaggtattccaacatagcattatctctaa<br>ttggggagagtgaaacaggcagagtcactggtagcactcaatatctagaacagtaaaacctttccagtatttttaaattaaggtgccttgtgtaggatgg<br>gctcaatgctgtgtgctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	633	304	NA	intron:EZR:NM:001111077:7/14
0	chr6	114068592	114068593	1001981	0	-	1104685231905	NA	NA	SINE	Alu	AluY	gatttgagagtatcaatactgtaaagccaatcttacttctgaactttttcttagttctgaat<font color="green"><u>TTTTTATTTATTTATTTTTTAAGATGGAGTCTCACTCT<br>GTCTCCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCGGCATCCCGGGTCCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGG<br>ATTACAGGTGCCTGCTGCCACACCTAGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTACACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTTA<br>AGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCCTCCATTTTGACCTCCTTATAGAACAGCTAACTGTT<br></u></font><font color="red">AAAAAAC</font><font color="green"><u>TTTTTATTTATTTATTTTTTAAGATGGAGTCTCACTCTGTCTCCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCGGCATC<br>CCGGGTCCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCTGCTGCCACACCTAGCTAATTTTTGTATTTTTGGTAGAGACAG<br>GGTTTACACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTTAAGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACT<br>GTGCCTGGCCTCCATTTTGACCTCCTTATAGAACAGCTAACTGTT</u></font>ttaaaaaaataaaaaaaggaaaattgcctggccaatctagggataccagccaacg<br>atgtggg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	137254209	137254210	1001982	0	+	1104685227002	NA	NA	SINE	Alu	AluYa5	aactttggggtcaatatctcctttaatattcaaataatataacctattccttcaccttatataaccttggaaagcacagacctgcactagcatttcaaag<br>gcgtccttgagcaccactgccctatcttagcagcatagctcagagctgctggttacttcctgctccaggctgttgtgctaatgatcactttgttaaaaaa<br>acagcttcattgaggctgggcatggtggctacacctgtaatcccagcactttgggaggctgaggtgggaggatcacttgcgcccaggagtttgagaccag<br>gctgggcaacataatgataccttgtctctatttttaaaaattaaaaaaaaaaaaaaactcattgaaatataatttagataccat<font color="green"><u>AAATCAGGCAAATTTT<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC<br>CGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCC<br>CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATCAGGCAAATTTT</u></font>agcgtacaactagtgatctt<br>tagtatatttacagagttgtgcaatcatcattactgtctaattttagaacatttccttcacctcaaaaaataaaaaaccctacacccattggaagtcact<br>acccatttcttcccaatcctccagcccccagcaattactatttactttctgtctccatggatctgcctatatggactgatcatttcttggtatcctaaat<br>tgtttttgcagcctgtttttcttaacctactcctgcactcctgtttttacccaaagcattgcagaacaaagctggcattgggatgcagttgacaagattt<br>actgaacgcttgatgccacctactataagggcatctcaatgtagaaaaggaaaacgtgaaagct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	131057587	131057588	1001983	0	-	1104685228316	NA	NA	SINE	Alu	AluYh9	aaggtcagtattttatcatgcttaacatgatacaaaattctgtttttgaatagctaattgctgctttagtataatctggcagcttacaagtaaatgaaga<br>cacacataaatgtgatctaaaatgaaattgtctaaagatataaaagtagctgtattagggagtatcacaattactctttcttagcctctttgtttaaatt<br>tttcaaatgtgttagtttgttgatggatgatgtcaagttctaacacaaaaaattaaacataaacataaccgttgttcttaaatggcacaccttttctttt<br>ttcttgttcttaagaaagcacttcttttatgacattttctacctttgaaatatcattactggtgcactgtagatagttctct<font color="green"><u>GGTAGTATCTCCTTTTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCAGGAGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCG<br>GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GGTAGTATCTCCTTTTTT</u></font>aacatccctaattgaactcaaatcagtatgtccttgaaacaacaaaaaattgtaatagataaccagtacattatgaga<br>ctcagacaatgtaaagggatttagtattgtaatcagatataacttacaacaaagtgtattggctcataattactactgagctgcaagtaacttccatggc<br>agtagaaatctgcttatggaaatgactctaactagccttcttttacagggtcaacccaggtaaatgtgggggctgccgaataaatggaaaagggacctga<br>gaagatgccaaacttgctctgggccataaccaagagacccaggtgctgtggtcttgtatgctttttgattagggatgatgcttctgctccaggctcttgg<br>tagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	88484645	88484646	1001984	0	-	1104685463207	NA	NA	SINE	Alu	AluYa5	ccatacaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtccaaaacaccaaaagcaatggcaacaaaagc<br>caaaattgacaaatgcgatctaattaaactaaagaacttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatt<br>tttgcaatctactcatctgacaaagggctaatatccagaatctacgatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaacaagtggg<br>caaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatg<font color="green"><u>NNNNN<br></u></font><font color="red">CAAAACCACAATGAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCA<br>TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA<br>GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA<br>AAAAAAAAA</font><font color="green"><u>NNNNN</u></font>cacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaa<br>taggaacacttttacaatgttggtgagactgtaaactagttcaaccattgtggaagtcagtgtggtgatttctcagggatctagaactagaaataccatt<br>tgacccagcaatgccattactgggtatatacccaaaggattataaatcatgctgctataagacacatgcacaggtatgtttattgtggcactattcacaa<br>tagcaaagacttggaaccaacccaaatgtccaaccatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaa<br>tgatgagtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	94877510	94877511	1001985	0	-	1104685461848	NA	NA	SINE	Alu	AluY	agagacaatgacaatttaaaacaggaataggttatttactgcatcttttattaagcaatgttttgtatcaagttgtttatttagcaaccgccactaattt<br>aaaattattattcacggagctggactaacaccgtgaatgatgtatagtcgtattttgactaaagagctgcagagtgaattagctgagaatagcatttaac<br>caaaatagccttgctaattcatctccatttaaaacacacggagaaaccaaaacaagtgttcaatgtgaacaacaaaagagatcattagtggtagtggtgg<br>tggtgattgggggcgggggagggtaattatgttttaatttttaaaagaccattgaaacaataaagaatattgctttaaaagtaatttaa<font color="green"><u>TAAAAATATAT<br></u></font><font color="red">ATTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTACAAATACAAAAAATTAGC<br>CGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCG<br>CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAAAATATAT</u></font>aatctttgaaattgt<br>atatttgataaaactaaacaaaattgctagaattgtgtctcatacgagtgccttaaagtttgtcaatgaaaatatatagactaataatacatactccctt<br>ttatcaagaccttttctcccccacaaatttaaattatgtgaaccaaacaactaaaaatttccagtagtacctggcacttaaattatgcatgtattaagtt<br>tataagatttaattattagaaattagaaatggtttataaaacattgatgtgctatactaaatttgttcctacaaatgattaaatctatttataataaggt<br>aagtgaagaggagatatagtagctttgcttaaggaattagtaatcaaaacatactttgcatacttgaaccatta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PPP1R9A:NM:017650:8/16	
0	chr7	100554103	100554104	1001986	0	+	1104685014406	NA	NA	SINE	Alu	AluYa5	accaagtcaggaatgctggcagccccttctgaaaaggatgcacgtggcatcccaactcatgacctctgctcccttcccccttctggtgcactttgggttg<br>cttctggaggtgcccctccaaggacccatatgttcctggctggggcactctctaaggctgtggacccctcaggaatggcagcatcgtggtggactacctg<br>gtcctgctggagatgcccttcagcccccagctggagagcgagtatgagcaggtgaagaccacgctgaaggaggggctgcagaacgccagccaggatgtga<br>acagctgccaggactcccagagtgagcccaggctggaagggagggccagggccctgaggtgtcaccccagcccactccagctcagccagggggcc<font color="green"><u>NNNNN<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGA<br>GCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAACTTACCT</font><font color="green"><u>NNN<br>NN</u></font>tggtggctcatgcctgtggtcccagttatttggaaggctgaggtgggagaatcacttgagcctgggagttcaaggctgcagtgagctatgatccccct<br>attgcacttcagcctggatgacagaatgagaccctatctcaacaataaaaaaaagttaggctgattagcaatctaattcaatctgcacccttgatcctcc<br>cttgccatgtagtatagcatagtcacagttctggggattaggacatggacatcttcccactatgggggcagccaggagggaccacaggctgaccgctatc<br>tttctgcctgctttcactcatctccacacaattccttccttcctctcgctctcttctttcttttcttcttttcttttgtctctttctcttttctttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	101000403	101000404	1001987	0	+	1104685065844	NA	NA	SINE	Alu	AluYb8	ttcaaggccagcctgggcaacatgccaaaaccctatctctattaaaaatataaaaatcagctgggcttggtggtgcatgcctgtagtcccaggtactcgg<br>gaggctgaggtgtgggaggaatgatgctcaggaggtcgaggtgcagtgagctgagatggcaccactgcactccagcctgggagacagaggcacggtttaa<br>aaaagatgaaactcagatgactgtcttattcctgcagtttctgggatgtattcatgcttgtcctaaagactttcatcctaggctgggcacagtggctcac<br>gtctgtaatctcagcactttgggaggctgaggtgggcggatcaccaaaggtcaggagtccaagaccagcctggcaaacatggtgaaaccctttct<font color="green"><u>NNNNN<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGC<br>CGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTG<br>CGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCA</font><font color="green"><u>NNNNN</u></font>aaaaaaaaaaaaaaaaattagctgagtgtggtggcagacgcct<br>gtagtcccagttacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagactataccactgcactccagcctgg<br>gcgatagagcgagatccagtctcaaaaaaaaaaaaagaggcttttgtcctaaaatactctagcactatatggagtaatgttattcctttgtctccctgtt<br>tctccatggtcactctagcttgggtgcagcccctggcactggaaaaatgagttgaagataataaacgatattgctgttcccttaccgtgatgcccagcag<br>cataaagcccggttgacagcaacatggaatatggaatttctctgttctttaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	49057625	49058036	1001988	0	-	1104685051163	NA	NA	SINE	Alu	AluY	accttgggcacatgtcaggacgtcttgagatgcgtcacaggcaagtccttaaccttggcaaaaccaactttctaaatcgattgagaccagtttcagacgc<br>tttttggtttacaatacacacgcgcgcacacacatgcacacgcgcacgcctttaactaccctgaaacacaagcttccatctttgcagaactactatagaa<br>ttatagtgctctaaatgctgcctgagagagctgtgctgaagtactgaagtacatgtgtccatttattaactaagttgtttaatttttttccctaacgagt<br>tgtaggatttcttgacgtattttggatataagtattttataaaatgtgtgattgagaatattttcctccagcctatgacttgcctatttattatt<font color="green"><u>NNNNN<br></u></font><font color="red">ACATTTCTATATACATGGTAAAATCAGAATGCCATTTGTTAGAACCAAGCTACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGG<br>CCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGG<br>TAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGC<br>ACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>caagctacaggcattttgaatgggactgcactgaatgtatacac<br>caatttgggaatattgacatattaacaactttgtgtctgctaatccatgatcataatgtatttctttttctatttttagaccattatttatgtattccag<br>cattttttaatacttttcagggactaggtattacatatatttcattagattgattcctatgtattttatatatttaatgctgttgtgataacctttttta<br>tttcatttcaaactatcctttgctagtttttatatataaacccatgtcttgctattttatgaaaaggtttagttaaaattggtgttaattcatctttaat<br>tatttcatggaatttatttttggagctgtctgatctcacatttttctttgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	56244918	56244919	1001989	0	+	1104685642712	NA	NA	SINE	Alu	AluYb8	ctaagtctgaagacctgagaatcaggggagctgatgatgttaactccaggtttaaatctgaaggcctgagaactggggatgctgctgatgtaataggact<br>tacatcctattcaaaggcccaagaacccagagctctgatgtctgagagcagaagatggatgtctcagctcaagaagaaagttaatttgccctttctctac<br>ctttttgtactgttcgggccctcaatggaatggatggtgtcctcccacattggtgagggccagccttctttactcagtctactgattcaaatgctaatct<br>cttccagaaacatcttcacagatgcacctggaaataatgttttaccagccatctgggcatcccttaccccagtcaagttgacaca<font color="green"><u>AAAAGTAATCATCAC<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTGCTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAATCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGTAATCATCAC</u></font>attggtatatgaagaggattaagtcactcagttttgaataggtttgtgagtgctgaactttctttgtcaaggctg<br>attcgagttcataatgatctgctcactgtgtccctggagaagaagtaacaggggaaatgatgctcatggactgtcatggtcgttactagagactagatat<br>ttcttgtattctttataggggtgtgatacagtgattgagggcatctcctgtggagttagacagtctgacattactgttccagctctgtcatttgcttgct<br>ctgtgactgtgggtcaatttctcaacattctaaagtcctgcttgcctcatctaaaacatattaatattttacttgagaattgctgtaaagttctgacaag<br>ataatgcatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	66610055	66610056	1001990	0	-	1104685488620	NA	NA	SINE	Alu	AluYb8	ggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcaagaggtcaggagatcgagaccatcctagctaacacggtgaaa<br>ccccgtctctattaaaaatacaaaaaaattagccgggcgtgctggcgggcacctgtagtcccagctacacgggaggctgaggcaggagaatggcatgaac<br>ctgggaggcagagcttgcagtgagccaagatcatgccactgcactccagactgggagagggagcgagactccgtttcaaaaaaaaaaaaaaaaaaagaaa<br>ctaaaacagggtaaaatgcccatatgtacaatagccattgtattggtctgtaaaatatgtaaaagactgctaacaact<font color="green"><u>GTGAATCTTGTTTTTTTGTTTT<br></u></font><font color="red">CGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>G<br>TGAATCTTGTTTTTTTGTTTT</u></font>atcaactgctcaggatgggaaagtggcctctctcagtgccagcaccagcaagaagcaaattagtaggcctttcaaatca<br>cccacatctgactctcaccatcgactgattgtatttggagctggcattctggatttttcctgcatatgtttttgtttaaaatgctgtattagtttttgga<br>aataaatataaatgttgcctttgtaagtatcagttaaaaacgttgtattgaaagactgctgtgctgtaggaagtttggatattaaaaacaaagaggaggc<br>caggcctggtggctcacgcctgcaatctcagcactttgggaggccaacccgggcagatagcttcagctcagagctctagaggaggctgggcaacacggc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TYW1:NM:018264:13/16	
0	chr7	57346967	57346968	1001991	0	+	1104685269666	NA	NA	SINE	Alu	AluYa5	agtgcagtggcacaatcttggctcactgcaacctccatctcctgggttcaagcaattctcctgcctcagccttctgagtagctgggattacagtcatgcg<br>ccaccgcgcccagctaatttttttatatttttagtagagatgagctttcaccatattggccaggctggtctcaaactcctgaccttgtgatctgcctgcc<br>tcagcctcccaaagtgctgggattatgcgcgtgagccactgcacccagtccatgactcattgtaatgctcgctagagaacatcttccccacagtggttgg<br>ttagtgaccagatggatgggatgactcagcgatgatgggtgttagtcattctctgtcttaggctacattggcgcttatacaattgac<font color="green"><u>AAAGAGTTGGTCA<br></u></font><font color="red">AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAGAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAGTTGGTCA</u></font>tggggcacattacgcatggtctgagattgatctagttgttgctattgctgaatatttagcttgctagcagcaaagattgg<br>ctctgagcatgtattacagtgccatctgtgagaaactcctctagttattaggtggcaagttgattaaactgatcttccttcaacctagagatgaaagcat<br>tttgcgtttatttgaattattacctattcccaacatggtctgtcttccctggccttggtgcctctgctggcactaccatacaagggtgaaggaatgcctg<br>atttactgatacggaattaccaaccacattgcttcaaatcaagagatccattaggttggagcaaaggtaattcccgtttttgccattacttttaaagtat<br>tccttgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	36252166	36252167	1001992	0	-	1104685573744	NA	NA	SINE	Alu	AluYa5	aacctcaggcgatctgcctgccttggcctcccaaagtgctgggattataggcgtgagccacctcacccggccacagccatgctttcttaaggtatacttt<br>tgttaatgatgataaaatatatgcttgttataggaaattttgaaaatacaaataataaatttaaaataaccactgtttacatactggtatattcctacat<br>gtacatgtgtctttgtgtcttatatttagaaactgcaatcatatcatgaatacatacgatagatggttacacagtggccccctagtactcacctcttgtg<br>tagtcggctcccactgagtctgggcttggccatgtgacttcctttggccaatgggacattagcaagcatgatgcaaacagaggtt<font color="green"><u>AAGAACCACTACATT<br></u></font><font color="red">GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGACTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAACCACTACATT</u></font>aataaccttaaaaaatatttttaatggttatattatattctggtgtatatgtactataatttactgtttcctc<br>tattgctgggtatttaattttttcacatttttctgacttatgattaatgaatatctttgcatatatatgggatgcatttctgacgatctccttaagctgg<br>atttccagaggtggacctattgggtcaaaagatttgtacatagttaagcctcttcaaactgtgtgacagaaaagctatttctagctacactccccccagc<br>aatttagaaatgtatctttcttaacacagtccccactgggttacttcatagaggaaaactgacatctcattttactttgcatttgtttgattacccataa<br>gttaaacatttc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EEPD1:NM:030636:2/8	
0	chr8	9807902	9807903	1001993	0	+	1104685245064	NA	NA	SINE	Alu	AluYb8	gtttgcttccctcccatgaccgactgagagttttgaacaaatttctgggaaaagcgcaaggatgggtctgctatgagctgtccgccagtgtggtgctgat<br>atgcacattatgccacctagctattgaggagccggggagctgtccctgcaacagccacagcgaactcctgctgcttgactctgccgcacagcaaagaggt<br>caaggtgtgtgtgtgtgtgtgtgtgtacatgtgtgtaatttgcaagtaatgtggctatttctatcattccagtgaaaagtcatccctgacgattgggaga<br>gctcataggctatggcctttcaaaacattcttcactaaggggagagctgagtctggtgaggatggagggctgcggttcaagtcagctat<font color="green"><u>CAGACTCTTTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAATATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>CAGACTCTTTT</u></font>actctctcctagtctctttggtccagggcgatgacttgtctgggaaatgtggaatacaacaaaggagtctgtg<br>tagacaacttgcctagtttggtgctgatttttaggtaagtgagaagtaaaacctgcaagtgcttctttcctgaagcatctcaaggaaatgtgccaccagg<br>gccttcttctgggatgtactctcctaagagcatttctgggctcagggacagccttcaggccttaatttttcttctgagaatcccaagggttggatgtttg<br>gctcatctcttttggtgtcctgtcttgacacaaccttgccaaacaggacatagcccataatttttcttccttgcttcccatctctcagtaaatgcacaat<br>tccaagcatttttgtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	13561292	13561293	1001994	0	-	1104685164538	NA	NA	SINE	Alu	AluYb8	cctgtaatcccaacactttgggaggccaaagcgggcggatcacaaggtcaagagatcaagtctatcctggtgaacacggtaaaaccccatctctaaaaaa<br>atacaaaaattagctgagcgtggtggtgcgtgcctgtaatcccagctactcgggaggctgaggcagagaatagcttgaacctgggaggcggaggttgcag<br>tgagctgagatcgtgccactgcattccagcctggtgacagagtgagactatctcaaaaaaaaaaaaaaaaaaaaaaggaagtctgaaaaatgacattaca<br>tagtaacaaattttgagtctttagagtattcttagttgtcagaaaaaatcattttcaaagtagatgatcgtgatgaggtatacca<font color="green"><u>CTCAAGGTTTATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>ATAAATAAAAA</font><font color="green"><u>CTCAAGGTTTATTTT</u></font>actgtaaatatttatatacatatgaaacatttatataaatatgaaagcagcattttataattttatgtggaaaa<br>gttacatcctttaccttcctcatttaggtaaaagcctaataaaatgtaatctgtatcaatgcaagatcagttaagagacagaaaccataccagtaatcca<br>aagtgtaaaaacagaatatgaggaaatatgaattcacaacaggggattagccaataagagcaaagggaatctaaaaaatatagctgaggcgggtggatca<br>cctgaggtcaggagtttgagaccagcctgaccaacaaggtgaaacaccatctctaccaagaatataaaaattagctgggtttggtgatgggcacctgtaa<br>tcccagctact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	15399349	15399350	1001995	0	+	1104685163920	NA	NA	SINE	Alu	AluY	tttttcctggttaagttgtacacctacacagggctcaaaatctgaattgggtttaagatattaacaaaattttaatagctgggtagagacagtgaaaaaa<br>taccctcatatgcagagtgattgtttccctttctctttattcttagtctgaaacaaatattgtgtgttcaattttaactaatgtacctctcttcagcttt<br>taaattttaacatgaaagtaggtcatatgaaattattggtgaagttctgctaagggatttagagaaccactgttaaactgaaattgtatttacaaatata<br>aattaatgattttttttagcacttggtatttgtgtaccatattccaagagttttagatttaggagttcacgagaaaggtagaagagtg<font color="green"><u>CTACTTTTTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>CTACTTTTTCTT</u></font>cagttttttttgtggattaccaaagcaaagggcaataaaagatgatgaagaactccatggaaattgtgatgttttatctccta<br>ggacgatccctaggaccacgccaattttcatttgaagggtgtgaaccccaaagtattttaagactgaccttaatcaattttttttttttttgccagtgtt<br>aaggatgcactggtgacacagcctctggaggtcctgatggcaggtgcccaaggtggtcagggtacagctggcttttatacattttagagagacataatac<br>attgatcaatacatgtaaggtctacattggtttgatctggaagggtgggacaactcaaagggggaggggcatccaggtcataggtagatttaaaaatttt<br>ctgat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TUSC3:NM:178234:1/10	
0	chr7	147704401	147704402	1001996	0	+	1104685327568	NA	NA	SINE	Alu	AluYa5	gaatatatagaacattctagcaaatctttcttagactattacatctttgacttacatgtttatgaagaatcatctgtgcctctgattggccttatataaa<br>tacaagggtcatttcagagagcagttcttaactgacttggaaaagcctaagagccaaacaattcagcagctcttccacattgatggcaccagccacatgc<br>agtacatgtgctttacgcatttcattattgcatctctttgtcttatgagtttattgatggaaaattgtgccttgtcttttatcaagtaaacatatttcag<br>aagacatctacatgctatcaacaaaacagagcaaattcagaaaatgtaggacttcgttgtacttgggggattacttcaattgccttaatagtcta<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAATAGTCTACCAGAG</font><font color="green"><u>NNNNN</u></font>atattacattctttaaagttcagataaataatttgtgctgcttatgtaggaagtaagctattctccactgtaagc<br>agtcttttatgttgacaatatagaaataatctgtcttataagctacactgcatctaaagccctgacactacagatttatgcatacttctggctgaaaata<br>atattgaaatgtgaaaatgaaatctttcaccaaatctctgggaacataggtttgaggctggctttggaatcactaaaaattcattgattcccgaacgtag<br>actaagtaccataagaactgactagggtacttgattgagcttgtgctgtatggtttattacactggtggtaggaatgtgtcaatagtgattatactgctc<br>taannnnnnnnnnnnnnnnn	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	157448788	157448789	1001997	0	-	1104685310097	NA	NA	SINE	Alu	AluYa5	nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnntgatcctggtaagcccagtctttgcactccctgccacacaaacaccagggccctccttcctcggcccctgcaacacccagcat<br>ctgcgcccgctgaccctcggggactgggcgatgatggctgcaccctgcccgctgcagaggctgacaggcagggctctttctgcagggagtcttcttaatt<br>tagataaacaagaatatttacttcctgagatctttgccgtgcttctgcctggaacgtgcagcccccacacacagtccctggtgtg<font color="green"><u>CGGGTGCTCACTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>ACA</font><font color="green"><u>CGGGTGCTCACTCTT</u></font>ctatttagttttcagtggaatacacgtctgttagtgcctaccatgtgcgctgccgttttgggcctctgactcggaagcagct<br>gctgtctccttggcactcaaggccagcaagcgtcatttgggtaaataaatgtcactgctgtgacagcaaggcaggaggaggtgtgggctgggtgctcggc<br>tcttcacaggagccttcctggtggcgccggccagaggctcacggcgacgcggcttcagcggccttttccagggtcctcgctggagtgatcacgcgtgtgt<br>ggccgtgcattgccactccatacataatgaatgtccgggtgttattaggacagctgtcaatagcgcagcacgtcctgctggctgcctcctggatctccag<br>gcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTPRN2:NM:002847:14/23	
0	chr7	133581596	133581597	1001998	0	+	1104685011244	GGTATGTGCTGGACTCATGAAA	CTATCTCCTCATTGTCCCCTTT	SINE	Alu	AluYa5	aaagtgcagtacataatcaggtgctacttgtacagtatagactgtgagggcagaaggaacaaaaaacaagaaagagaaagggttgtagtcgggaatggtt<br>ttgcaggtgaggtatgtgctggactcatgaaatttacggaggtggagagaaacataaaggcaggggtggaggaagcaataagacagttgccccctatttt<br>attttatttattttatttatttatttattcattt<font color="green"><u>TTTTTTGAGAAGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGC<br>AACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCATCCCCCTGAGTAGCTGGGACTACAGGTGCGCGCCACCATGTCTGGCTATTTTTGTATTTTT<br></u></font><font color="red">TTTTTTTTT</font><font color="green"><u>TTTTTTGAGAAGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCG<br>ATTCTCCTGCCTCATCCCCCTGAGTAGCTGGGACTACAGGTGCGCGCCACCATGTCTGGCTATTTTTGTATTTTT</u></font>tttagtagagacggggtttcaccgt<br>tttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccggcccagt<br>tgcccactatttaaaggggacaatgaggagatagtttgactggaacagagttcctattagaatctagtaggagataatgttgaataggaagattaagacc<br>aactaaaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	624	447	NA	intron:EXOC4:NM:021807:12/18
0	chr7	136369722	136369723	1001999	0	-	1104685012012	NA	NA	SINE	Alu	AluYa5	actaaaaataaaaagcaataataatactctaaatggtagtggtactgtaacaattcagttgatattttctgctcaaagtctttacaattgacaagtcacc<br>tcttacactgtattttatttttatgtgttaagtgagactactgacttagataatctctgaagtccctttcattatataatattgtaactctgagcttaat<br>tcttctatatatctgatagaatttctctatgatcattgtactagcatataataagtagggttcacactgattcaggaagagtttttaaaaacatatttaa<br>tattctcaggtaatttttcagaactgttaaaaactatttagccttttgacttgtggaaaaaaaacaatagttgtatctaaggat<font color="green"><u>AAAAAGATGACAAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTTTAAAAACATATTTACCGCCACAGGCACTTTCAGACTGGGAGACACTATTTAGCCTCTGACTTGTGGAAAAAAAAAATAT<br>TGAAAAAAAGAAAA</font><font color="green"><u>AAAAAGATGACAAGAA</u></font>tagaataataacaaaaagactaaaatatttcatagcttctcaattctgtatgccatattttacataaatg<br>ttacaaaattcaaggaagtaggtattttcttcatttttttttaatctgcagagtggtagtggaacttgccaaggacatacagttttagccacagtttaac<br>actagaccttctggtttcaagtccaaacctctagcaccaatctacggctgtttcttgatgacaggcctggtattctccactaaattcatacttttcatga<br>aaaaataataatgtcaagttctccacattaggaactgctatggtctgaatgtttgttttcccccaaaatccatatgttgaagttataacctccaagatga<br>tggtattagtaggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	106622177	106622178	1002000	0	-	1104685588621	NA	NA	SINE	Alu	AluY	cctgtttccctaatggcagacatggcactcattctatatctcatggtgtactaggccgttcttgcattgcataaagaaatacctcactttgggcgcggtg<br>gctcacgcctgtaatcccagcactttggaaggccgagatgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctc<br>tactaaaaatacaaaaaaattagccggacatagtggtgggcacctgcagtccctgctactcaggagggtga<font color="green"><u>TTTGAGACAGAGTATCGCTCTGTCACCCA<br>GGCTGGAGTGCAGTGGCGCAATCTTGGCCCACTGCAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTGAGCCTCCCGAGTAGCTGGAAATATAGG<br>CGCATGCCACCATGTCCGGCTAATTTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATTTCCTGACCTCCTGATCTGC<br>CCGCCTCGGCCTCCCAAAGTGAGGTTTTTTTTTTGTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTCGAGTGCAGCTGCACGAT<br>CTGGGCTCACTGCAAGCTCTGCCTCCCGGGTTGATGCCATTCTCCTGCCTCACCCTCCTGAGTAGCAGGGACTGCAGGTGCCCACCACTATGTCCGGCTA<br>ATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCATCTCGGCCTTCCAAAGTG<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCAGATCAGGAGGTCAGGAAATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTGCTAAAAATACAAAAAAAT<br>TAGCCGGACATAGTGGTGGGCACCTGCAGTCCCTGCTACTCAGGAGGGTGAGGCAGGAGAATGGCGTGAACCCGAGAGGCAGAGCTTGCAGTGAGCCCAG<br>ATCGTGCAGCTGCACTCAAGCCTGGGCAACAGAGCAAGACTCTGTCTCAA</font><font color="green"><u>TTTGAGACAGAGTATCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAA<br>TCTTGGCCCACTGCAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTGAGCCTCCCGAGTAGCTGGAAATATAGGCGCATGCCACCATGTCCGGCT<br>AATTTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATTTCCTGACCTCCTGATCTGCCCGCCTCGGCCTCCCAAAGTG<br>AGGTTTTTTTTTTGTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTCGAGTGCAGCTGCACGATCTGGGCTCACTGCAAGCTCTG<br>CCTCCCGGGTTGATGCCATTCTCCTGCCTCACCCTCCTGAGTAGCAGGGACTGCAGGTGCCCACCACTATGTCCGGCTAATTTTTTTGTATTTTTAGTAG<br>AGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCATCTCGGCCTTCCAAAGTG</u></font>ggacatggtggcatgcgccta<br>tatttccagctactcgggaggctcaggcaggagaatcgcttgaacctgggaggcagagattgcagtgggccaagattgcgccactgcactccagcctggg<br>tgacagagcgatactctgtctcaaacaacaacaacaacaacacccacaaaagaaatacctgaggctgggtaattgaggaagacaagaggtttaattggtt<br>catggttctgcaggctttataggaagctggcgccaacctttgcttgtctt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	109283353	109283354	1002001	0	+	1104685587973	NA	NA	SINE	Alu	AluYb8	tcagcaaagattatctactttaagagagacttaagggtggaggtttgaggtaaaaccaagagatgtcagttatgatggtttgaaggaaaagtataaactg<br>gcaatgtaaacaagggcagggtatttatgagtagttgagaatggtgaataggagcatgactagacagaagatagtagggatgacaagtttttggggtgca<br>gttcaagttggggcagtgtcaggaatgagactggggcctaataaaatggagtgtccatacaggagcttaaatgggctgtaccctgtagcaccccaaggac<br>agacctgaattctgagaagggcaaggggtaaaagtattgtccagtcctttttaagttggaggctgagcttggtgaggtgtgttttt<font color="green"><u>ACTAATGGTCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTTTTTACTAAAAATACAAAAAATTACCCGGGCGGGGTGGGGGGCGCCTGTAGTCCCAGCTACTCGGGGGGCTGAGGCAGGAGAATGGTGT<br>GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTCCAGTCCGCATTTTGGCCTGGGGGACAGAGGGAGATTCCTTTTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ACTAATGGTCTTTT</u></font>tgttttacctttcctgaagactgaggatggtaagtggtatgagggttccactgaataccaacagcct<br>gagaaactgcttgggtgatttgactaataaaggctggtccgttgtcggactgtatagaggtgggaaggccgaatcgaggaattatatctgacagaaggga<br>agaaatgattgtggtggccttctcagaccctgtgggaaaggcctctaatcatccagtgaaagcgtccacccagaccaagaactattttagtttcctgact<br>ccaggcatgtgagtaaagtcaatttgccagtcctgggcaggggtgaatccccaagcttgatgtgtagggaagggaggtggcctgagaaattcctgaggag<br>tagtagaatagcagatgga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr7	118083315	118083316	1002002	0	+	1104685586189	NA	NA	SINE	Alu	AluY	aagtgggagctaaatggtgataactaatgaacacaaagaagggagcgatagacactggggtccacttgaggtacagggcgggaggagggagaagagtaga<br>aaagataaatattgggtactaggcttagcatctgggtgatgaaataacctgtacaacagacccccatgatatgagtttacatatgtttcaaacctgcaca<br>tgtacccctgagccaaaaacaaaagtttcaaaaatttcttttttgttctttagcatagtttcataattttttatatggtatattctcatgtcttggtaag<br>tgtattaatagaaattgtatatttttgttgtgtcccaagcttcctctataattttattttttaagtaaattctttttatgtgagctt<font color="green"><u>AGGAATTATTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGGAATTATTTTT</u></font>attgtttaccaggattatgactgaagattatatataaacttttaaaaatctcagtttctttatttgtgtgatagagata<br>aggagagtcattacatttcatgtatcttatcatatttacaaactctttctttgtgccagtcactcctgtagcagacgccaggagaagagaagtcacaaag<br>acgactggtttttgccttgatggagcttacagtctagaagagaagatagatattaaacaaagtcttcacctacaatgatgggaagactacaaaagggaag<br>tgaacgttttattagagcaattaatggagaattaatgaattaatttgggtataagactatagtgtcaaagaaagcctccctagggaagaaatgtttcaag<br>tgtaactt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	96657280	96657281	1002003	0	-	1104685364674	NA	NA	SINE	Alu	AluYb8	agacaactaggcaatgtaataggcattttttttttaacatttccatagtatgccccaaggtgctattgcttatcttgtttagaactgtgctttaatgtgt<br>ttcctcagttgtaacccacactggttctagtttggggttttttcgttttattttatttacagggcccttttgtgtatctcttctagtgcctggcttccct<br>ctataaacctattcgcagagaattcagttctctcaagctgctgtcaagctgcactgaagcttttcctgagatccctcttctgagacaagatgattctctt<br>tttattctctctcccttatttccatcaagacctccattcagaggatagtgtaaacagatacacccaattatacaaaagtgtccatg<font color="green"><u>AATGAGAACTGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATGAGAACTGTTA</u></font>ttctcatctgaagattgagtacaaggctacctcgctattcaaggtgtggtctgcaaaccagcagcactgg<br>cgtcactttggagcttgttagaactgcagaatcttgggcccttctccagaccaatttgcatgtgcagtagagtttgaggagctctgcgttaccaatagtt<br>aaaataattagttaggcgtgtgtctatgagccaggcagcacctgacgagactgaatttcctcacccttaaaatggaaacaaccattcaaatgatcttcca<br>ctccactcttccctttctagtcatcttgatatgctcctgtgaagttcacctccttgctaaatgttgccatcctctgcctcctttcaggaacatagcagca<br>cacatgcaatctccta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	110079100	110079101	1002004	0	+	1104685367763	NA	NA	SINE	Alu	AluYa5/8	ttaattcctttgggtaaataccaagtagcatgatttctggatcgtatggtacgaggatgtttagttttataagaaactgtcaaactgtttttcaaagtag<br>ctatatcattttacattcccacccacaatgaataagagtttctgttgtgccacaccctcatgagcatttggtgttgtcagtgttctggaatccggacatt<br>ctaacaggtaggtagtggcatctcactgttgttttcatttgcatttccctgatgatgtatgatgtggagcatctttacatatgcttatttaccatctata<br>tatcttttgttggtgaggtgtccgttcaggtcttttttggagcccattttttattgggttgtttgtgttcttattgtttagttt<font color="green"><u>AAGAATTCTTTGTATA<br></u></font><font color="red">ACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGA<br>GACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCTTTGTATA</u></font>ttatggacaatttttttgttgttatttttttgattttttta<br>aattttatttttattatactttaagttctagggtacatgtgcacaacgtacaggtttgttacatatgtatacatatgccatgttggtgtgctgcacccat<br>taactcgtcatttacattaggtatatctcctaatgctatccctcccctttccccctaccccacgacaggccccggtgtgtgatgttccccttcctgtgtc<br>caagtgatctcattgttcagttcccacctataagtgagaacatgcagtgtttggttttttgtccttgcgatagtttgctaagactgatggtttccagctt<br>catccatatccctacaaaggacatgaactcatccttttttatg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	110101605	110101606	1002005	0	-	1104685367776	NA	NA	SINE	Alu	AluY	tttgtcaatgtttgtcttggaagatagtcaatagatctctctaaatttccattaatcaagttttgggtaataaatggctgaataagccttatattaggta<br>tcactactagatccaaggcaaaagaaatctaagagctgacaatagttgtttaggtctttcttctgtcatctagttatctttaataataagtattatataa<br>accaagtattacagcaccatttaaaatgcagtatatgtttcctttaagttatggctcattattcatttcatgcatatctaaaacacttaaattttttagc<br>agtttatttcgctgtgtccagttacgatgcatatatcagctggagtttatgaagtaacagtgtgaatgattatatgtatactttttt<font color="green"><u>ACAAAGTACACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>ACAAAGTACACTC</u></font>gtttctagctatgtacacagaactatattcctttcaagaaatatgagaaaattcaacccatttaaaagtatc<br>agcatgttgatttcaagtttagatttcttttttcagctatgagaataaatatttatcatctgttcattatgtttaacaaagaaggaaaagaaacttcaag<br>ctaagtttgtcagtaacctagaacaattgtatatagataaatgtgtaaatgatataaaagtattttattcctatatcatttcataaacactgcaacaaag<br>ttttgcacttggttcactagtaaaaccactattcaactaattatatgcacattcaggtgatctaaaagtataacagaatttttaggtatgcttagcagga<br>aaaaaccgattttta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TRHR:NM:003301:1/2	
0	chr8	107207888	107207889	1002006	0	-	1104685367085	NA	NA	SINE	Alu	AluYb9	ctctttcaattattttaaaagatacatgttaaattactgttaactatggaactatggtaaacttttgtgctaccaaatactagatcatagtcatgtaatc<br>aaattgtatttttgtaccctttaaccatcccctccttcttggcccccttccctgctacccttctcagcctttggcctccatcattctactcccagagata<br>actttagtaaggaattggggtcgtgccaaataaataaaagacaaaatggcacaatgaagcaatttttttttatcaagatgataagcctgattggtggtga<br>ccttgaaagctttcatgaagattttaaagtgacacaatgttaaattagggacactagacagagaaagcaatggctcatctgtattaagtt<font color="green"><u>AAAAAGTGTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAGTGTC</u></font>taacaggaggaaaattcaagtggacaaaaaatgaattcagaaagaagacttgaatcacataattaactttcagggactcagtctactt<br>tctcatctgataaaatctttcaggatgacatgctgtaaaggtcagcattctgttacttctaagtagaaaaagttcttattctctagtttcttagtaaaga<br>tgacttgcagttaatgcctaaattatgatttctgtgaaacattcttctaaccaggggttagtggaaatcataatgtaaataaaaataaaattaatatgac<br>taaataataagactaagaagaagtgagtgttcatgatgaagtctccaaggacacagagcctgtctttaagattagaaatttgtagggaaaggtgtattct<br>ca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	71914591	71914592	1002007	0	+	1104685424812	NA	NA	SINE	Alu	AluYb8	atgagatcagccttaaaaaggtagaatagtttgggttccacttttatcatatatatatattggaaaatatctatcagaatgtttcatatgtttaagtaca<br>aatgatatgatgataataaatcaaatcttccaagtctttaattgaatactggctatcatgaagtcctaagagaaattccactactgttttcaggccattg<br>tgataccatataaggaattggctgtcattttagtaaatgtagttaattctatcatgtcctaacaggctgggtcagtggtcaaattgttggagagattggg<br>gttgacgatagtctataaactacgaggaagggctcaccatatgtggtaagagttttgtttcaaataattttaatctaatttaatgtt<font color="green"><u>AAAATAAAAGCTA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAATAAATAAATAAAATAAAAA</font><font color="green"><u>AAAATAAAAGCTA</u></font>aagccgtggtaggtttttgttttttttccgaaataattccagttgtgtttatctatattattttt<br>cttttagtatgttctgtctctcaattaacagcatagtatattagctttctaattctgtttattgtatctttaagtaaacttaatttatataaaatagtct<br>aaaataaagggcaaaacacatacattcaacaggcaacttctgttttatacggtctccctttttactcttttttattgatactattgtaactacaataaaa<br>acacacttgcctttaaatatgccattcggtgaagcttcacaaccactacaagtcctagtgaaaatgctgaaactcatgctttgagaagtgaatgatgatc<br>acctaagctgtaaaaaaactca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	85437275	85437276	1002008	0	-	1104685024411	NA	NA	SINE	Alu	AluYa5	acaagtgataaaaagaaaaaatagagagctgtcaggcattggaaaaaatatctatattttgacacaaaaatggtgtataacagtcaaagaaatgttacaa<br>ctaaaaaacaaatgacaagggaaaatgaatttttcagtgcaaacaaactgtctgtttttaatttagaagtttggatggagctcatgtaaagtgtctatct<br>atgaaaactcctgtaaaataaaagataaactgtaaactactgttgctgttgttccaaagaattttctatgatggtggaaacatttgatatctatactatc<br>caaaaagttagtcaataaccacatgtgacttttgaacccttcaaatctggctagtatgattaagacactgtatttttaattttacttagt<font color="green"><u>CCTCAATTTT<br></u></font><font color="red">GTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>C<br>CTCAATTTT</u></font>ccgtattttaatgaattgctctaccccgaaaggctaacagggatcttgccttctagacatataggataaaagtaaatcagaaatacatcta<br>gctatttatgtttcattcaaacctagagaacggctgtttttggtcctgaaaacttaggaaagatacaatagtgtagctgtatttcagaagaataaaaagt<br>tcaagtatctgtcatatgataactaatttaaaagattaagggttcattccggaaatatcaggctgaggtggtaaatgctctgtaaaattataaagaaatg<br>tgatcagaataaataaagccttttaatttctatttgagagagatttttacctttggatccatatatgatacatttattataaattaaaggcagctcaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RALYL:NM:001100392:2/10	
0	chr8	72206057	72206058	1002009	0	+	1104685424877	NA	NA	SINE	Alu	AluYa5	gtaattccatcaatgaggccagcattaccctaatactgaaatgagataaaggcattacaagatatgaaaactagaaactagaataatatttctcatgaac<br>ataaatgcaaagatcctcaacaaaatattagcaaactgaatccaacaatgtataaaaagaattatatgtcatgaccaagtaggattaatccaagatatat<br>aaggctggttcaacatttgaaaattaatgtaatccatcacatcaatgagctaatgaagaaaaaccatatgatcaaatcatcagatgcataaaaagcattt<br>gacaaagtccaatacccattcataataaaaaaactcagtaatctaggaaaggggagagagcttcctaaagctgacaaagaacat<font color="green"><u>AAAAAACAACTTACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGACTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACAACTTACAG</u></font>ctaacattatacttcatggcgagaaactagatgtttcctttctaagataaggaacaaagcaaagatg<br>tcccctctaccactcctgttcgacattgtacaagtccttactaatgcaataagaaaataaaaggtatacaaattgggaaggaagaaatataactgtcttt<br>tttcacaaaaaacatgattgtctatgtagaaaatattaaaaaaaaaaatcaacaaatacccacccccaaaaccaaacaactcttgaaaccaatgaagaag<br>gttgcaggatataacataatagataaaagtcaaatgccttcctatataccagcaatgagcagttggaatttgaaattaaaaacacaccggccgggcgcgg<br>tggctcacgcctgtaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:EYA1:NM:000503:9/18	
0	chr8	49045494	49045495	1002010	0	-	1104685419985	NA	NA	SINE	Alu	AluY	gcctggctctggtgctgcttatcctaacccgcccacatgataaacagaaccgcacacacctcgaaccagtgtcaggtcctggctttgattctgcgctatg<br>tttacaaaacttgtacccactgggggaaactgggggaagcactgaatctacccatacattttcacagcttcctgtgaacctataattatttcaaataaga<br>agtttttaaaaatttgagcagaatctagaaaatgtgaagaatgcatatactctagaactcagcaaaaatatcccagtaacaaacagtttgaaaatgtatt<br>ttttaaaagatacacatgaaaaaaatacaaaacaactaacactaaatttaacaaaagataaataagatttttgtgaggaaaattat<font color="green"><u>AAAACTTTATTAAA<br></u></font><font color="red">GCCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGCCCATCCTGGCTAACACGG<br>TGAAACCCCGTTTTTACTAAAAATACAAAAAAAAAAATTACCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAACTTTATTAAA</u></font>tatctttctaaagaatttaaacagagaaataagccatcatgtttgtggattaaaatactaaatataatagagat<br>attagttcttccccagtggatctatagattcaatgcaatttcatttgaaacccaacaagtttttttgtgaaacttgataaactgattgaaaaatgcatag<br>gagtaaaaagcagagaatagccaagacactcctaaaataagaataaggtgtaaggaattgactcacagatatcaaaaatcattgtgaaactacagaaagt<br>aggataatgtggtacttatttagagacagacaaattgacaaagagaacagaatggaggctagacctagaccagcacacgaatggaagttttctgtatgcc<br>caagctggtatt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	59615990	59615991	1002011	0	+	1104685422223	NA	NA	SINE	Alu	AluYb8	ttcatgaatgggattagggcccttgtaaaagaggtcccagagaactgtcttgcttcttccaccacgtgaggatacagagaataggcttctatgaatcagg<br>aagcaggccctcaccagacatggaatttcccagcaccttgatcttggacttcccagcctccagaattgtaaggaataaattattgttgtttataaggtac<br>ccagtccatggttatagaatcctgagtaggctaagataatacagacattgaaatgaaataaaacatattaaggattacagtgataaattgctctaaatta<br>ggaaatatgaccagaaaaccacatgaataacttaccaacaatagcaacaacaaaattagacatgtatcaaaatgagtgttttccttt<font color="green"><u>CAAAGTCACAATA<br></u></font><font color="red">AGGCAGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CAAAGTCACAATA</u></font>ttggcaagttgaacacttactagaaagattttatctaaaacagtgactttgccttgtgagcatatagaatgttaggt<br>atattagttgtgtagcaaaatcatcttctaaagtagatttgaggaaatgtgattaataaaatagatacactgagtaatatacagttaggtacaaaataaa<br>actacactgttaattaatgtcttttcctatataacatgtaaatgaattttccaggcaattccaagagagaaagtttaaaaatatcttgagaaatagcagc<br>atttttggaataaaggaaaaaatatctgcaatccaattagaggttacaaagcatttcaacttatattttctcatctgatttccattacaagctggaagaa<br>tagatgaaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	22483407	22483408	1002012	0	-	1104685036758	NA	NA	SINE	Alu	AluYb9	ggtgagcattcagggtgctttggtggcttcacccacttagcaccttgttaagacagggagccccttatggacactgttgaggtagaggattcctgtcttg<br>gggataagccctttgtttcatcaaaatctactccctgggtctgacttagtttgggggcatttaatgctttggtaaagttaatatcctcttactccctggc<br>aaaactgttcattactcttacctcaaatgtacacttgatttgctgaggctttttaaaaac<font color="green"><u>AAAAACAGGCCGGCCACGGTGGCTTACGCCTGTAATCCCA<br>GCACTTTGGGAGGCTGAGGCGGGTGGATTACTCAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCCACTAAAAATACGAAAA<br></u></font><font color="red">AAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTG<br>AGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACAGGCCGGCC<br>ACGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATTACTCAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAAC<br>CCCGTCTCCACTAAAAATACGAAAA</u></font>tagctgggcgtagtggcacatgtctgtaatcctagctctttgggaggctgaggcatgagaattgctggaacccag<br>gaggtggaggctgcagtgagcagagatcataccactgtactccagcctgggtgagagagcaagactctgtctcaaaaccaaattcctggtcatgtccttt<br>gagaggcacatctgggagtcctgctctgtgtggtagctgagctcctggaacctgacagtgagtctgccagcatcctctcaactct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:BIN3:NM:018688:6/9	
0	chr8	22779970	22779971	1002013	0	+	1104685036839	GGGTCTTGTCTCTGTCCCTCT	GAGATCAGGAGATCCCCAAAC	SINE	Alu	AluYb8	attgttatttgatgaggtgggcacagagccacagagagtgccctgaaggacagggcacatgccagggaaccagggatttgggtcttgtctctgtccctct<br>cttcacgcccatagggcactgccaggccagcgtttgaacatagcgtattgccccacctaggatgatgggaaaggggcatgtgcaggcctctgccctgctc<br>agctgctttagcaaagtcttggagaaggacacggagacaaatttatttgatctgcagatggcacagagctggtaaccaacaattctgatgatcaaattga<br>cttacgagacgacctggacaaacctgaggtgagctgaatcaaaaattaaagttactgagaaaatacactttaaattttgcatt<font color="green"><u>AAGACTAGGCACGGTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAACAAAAACAAAAAAACAAAAAAAACAA</font><font color="green"><u>AAGACTAGGCACGGTGG</u></font>ctcatgcctataatctcagctctttgggaggctggggtgggagcatcac<br>ttgagcccaggaatctgagaccagcctaggcaacatagtgagaccctgtttctaccaaaaattaaaaaaacaaacaaacaaacaaaaaacaaccatggta<br>gtgcctgcctgtgttcccagctacttgggaggatcacttgagcccaggaggtagaagctgcagtgagccatgattgcatcaccgcactccagcctgggtg<br>acagagcaagaccctatctcaaaaacaacttgcattcaagccagaaaacctcaaaggtgccaccttcctgtgtgcccttgctgcttgtggtttacctgac<br>atggaattcattctaatttccatgtggagagttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1072	720	NA	intron:PEBP4:NM:144962:2/7
0	chr8	23042418	23042419	1002014	0	+	1104685036929	NA	NA	SINE	Alu	AluY	gaggctaccatgttacccagagcctaaaaaaaaaaaaaaaaaaagaatattttattcctggtttacgaattaatgtctttaagtccaccaatcccactgt<br>atattttgtgcaattaagaaattcactttaggcatgtgaccagtaagtactttattgctagtactatctctgcaaaagagcagtacagtgtgaaacaaag<br>caatgcaagcgtgggtgtgaaatgtggccccttgttaaataggacttcatgatgaactatattaaagaagaattggcaaactgccagtgtatttctttac<br>aatacttcttactttaccttcatcaagactaagcgctttaaccacgagcaatgtcaattagccaaacctttcaattttctatcagattt<font color="green"><u>AAAGAATATTT<br></u></font><font color="red">TGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCAGGCCACTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATATTT</u></font>tacaatgtacttgcatggatcattgatgacatactaggactttctattttgtcctaaatttttttctg<br>tcttgttttaataatcattcaatttatattagaacatattcatatattcatcatacaagactttttctcatacaaagttattctcttttctttctaacct<br>tcattaccaaaaatatatcttcaccataatttttttcttttccttttttttttttttttttgttagaaatgagctttttggcaggtcacccaggctgatc<br>ttgaactcctaaggtcaagcgatccacttgcttcagcctcccacagtgagccaccacgcctcccataaatccataacttacttcacatctctctccccta<br>cttactggttcctttctacct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	35069038	35069039	1002015	0	+	1104685194302	NA	NA	SINE	Alu	AluYa5	gtgagaataaattcttgcacacaccaagctaaaagacaagcgtttgattagcagtgacaaaaataatatacagattttccttgtagccatgccttaaatt<br>gaatgccaacttctttctaatttagtgaaatcattgttgtcacatgtcacttagtaaggagttaatagaaatgtttataaataatatggtttttacaaat<br>ctaaagcagattttagtttctgtgtcctcaattcatttgttctaaagttgacttaatattcagaaatttctctgttaccatgtatttccttatgatcatg<br>atcattatcaaaattatcatcatcacatttttacagataatacaaccatctcatgatcacacaggaaaagagaggacatgtctgc<font color="green"><u>GGGAGTTACTCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>GGGAGTT<br>ACTCTTTT</u></font>ttacagcaatggaatcaggacacttatcactaaaagaatgaccatttatccaatgactaagataatttacccaataaaacagcttcaaactt<br>tattttattttacttttgaggagcaattaattaatgttatttacataaaaagaaataaaatactattttacaaatgagttctagtcaaagctcaaattat<br>gcatcagacatattatttattattttgcatagggtgatcacttccacagtccaggattctttgtcagcgaacttttgtgataggatctgtcctgtgaata<br>ttcatactttttaaatagctaaataattggctacatcaaagcctgaagtacccctttgccctcttaggaaagatgatagttgcttcttaggcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	24779114	24779115	1002016	0	+	1104685037370	NA	NA	SINE	Alu	AluYd8	tcaattgcctggttgattaattaattcaataaatgtttattgaggactagagcttggagatacaatggtcttctcttataaaattacttactttgttgtc<br>actgccagccatcacactattattgaaagagaaagcaatttgaaattcatgtgtccaaatatgttcagtgacagggagaaactacatttaaactaagcac<br>aaatctccacgtgtttaggatataagagtacctttcctctgatgacaattggtctctgggcacaatgacatcaagccattgaaaaacagaatttctacct<br>tgccagtagactgtcttggagacactattttattttaaatattgtgaggattatcaaagttcatttattctcaatcttaaaacata<font color="green"><u>AAGAACAGATTTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGTGGGCGCCCTGTAGTCCCAGCTACTGGGGAGGTTGAGGCAGGAGAATGGCGTGAACCCGGAA<br>GGGGGAGCTTCCAGTGAGGGGAAATCGCCCCACACCACTCCCGCCTGGGGGACAGAAGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAACAGATTTTT</u></font>tttaagaaaaacttcctctgggtcacacactagtagatgacagaactgggatttaactcataggaaaggtccagagtat<br>gtactcttttttatttatttattttattttttattttattttatttttttttgacaggctctcactctgtcacccagactggagttcagtggcatgatca<br>tggttcactgcagcctggagcatctgggctcaggtgatcctcccacctcagcctcctgagtagctgagactacaggcacatgccaccctgcccagctaac<br>tatttttgtggggtttttttgtagagataagtttcgtgatgtttcccaggctggtctcaaacccctggactcaggcaatctgcccatttcagcctcccga<br>agtgctg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	28195390	28195391	1002017	0	+	1104685684309	NA	NA	SINE	Alu	AluYa5	ccttaacagaataagtggacaaaaacaaaacaaaacaaaaaggattagtaataaaacctaggaaaaacaaacaacagaaatgtaaacatttgttttttga<br>aattaaggggaaaatactctattaagtaacttttagaacaaaatataagtcaaagcagaattacagactatttagacagtaacagtggacacctacatgt<br>tggaatgtataggaacaagctacaatatatttgacaggaaaaggcataaaatgtgatagttattaattagacctacctgaaatagtcatggggattaggt<br>cctctctaccctcatttatattttgccatctcactatgttatggaactcataaaaaaaattcaagaaagttgcctttaaataac<font color="green"><u>TGTCGCTCACCATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>TGT<br>CGCTCACCATCTT</u></font>aaagcgaaatagaaaaatgtataattatatgaaagataaggaatgataataaaaaatagaaacatgggatatggagaggcacttaaa<br>agatgctttttcactctgataaacaagaatttggtaaaaataaatatcataattataataataattaaataaatattaaaagattgatttttttcacaac<br>cctatataaacaaatttgggaacttggatgaaacagatgattttctaagaaaataatattaccagaacagataaattatagccagaaaagatctgaaaaa<br>cttccatcaacaaacatctccccattccaataaataagtaaatctcttatttattcatacatagtttatagcaaagatgcttttatgaaaagaatta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LINGO2:NM:152570:5/7	
0	chr9	34115521	34115522	1002018	0	+	1104685682496	NA	NA	SINE	Alu	AluY	aagacaggtgggcaacctaagtctgtggagaggttgggaaaggaaagacaagtgaaatcaaagcagaagaatctattcactatcccaatctgagaaagtg<br>gggaggagcaaaggagagagccaagaccaagaaacacaacagaaaatggacagacaatatgtatcaaacattaaaaatatgtatagcggctaggcgcggt<br>ggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggccaacatggtgaaaccctgtct<br>ctactaaaaatacaaaaaattagccgggcg<font color="green"><u>GGTTCAAGTAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCAGGCCACCATGCCCAGC<br></u></font><font color="red">GTGGTCAGATCAGTGAGCCGAGATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCAGTGGTGGGCGCCTGTAG<br>TCCCAGCTACTCATAGACATATATATATAGCTTGTAATACCAATTTTAGGAACTTACACTGAGGCAGAGCTTGCAGTGAGCTGAGATCACACCACTGTAT<br>TCCAGCCTGGGCCACAGAATGAGACGCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GGTTCAAGTAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG<br>GACTACAGGTGCAGGCCACCATGCCCAGC</u></font>ggtaggcggaggttgcagtgagccgagatagcgccaccgcactccagcctggcgacagagcaagacttcgt<br>ctcaaaaaaaaaaaagtatatatatacacatagcaggaccctatagtctctgcagtctccccatagacatatatatatagcttgtaataccaattttagg<br>aacttacactgaggaactagtgatgggtgaacagtttgaactactgtacatcttttttaattatagagacagggtgccactttgttgcccatgttgtaat<br>aaaacccacctgggctcaggcaatcctcccgccttagtctcccaaagtgcgggattaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DCAF12:NM:015397:2/9	
0	chr9	38767775	38767776	1002019	0	+	1104685502590	NA	NA	SINE	Alu	AluY	agttaggacaatcaatagatgtagatatgtagtataatgccagaccgtggtaagtgctgtgagggaagctgaagctggtagtgagatggagagtagctgt<br>tgaggacggttgtcagagaagatttctcagaaggactagtattttttggtgaagaagttatcctcctcttctctctgagaaaaacccatgcactcccacg<br>tgaacctcttcaagcgggctctcgtgttgctctggcgcagccctcttgtgctttcagtgctcccttgatttctgacataacaaggtaactgttcaccgac<br>tacttctattgcccagacccggaattaaccatttcctcaaggactggcattattattattaatgcggtataacttacacagagtat<font color="green"><u>TAGTGTACTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>TAGTGTACTTTCTT</u></font>tcttacatgtacaattcaatgaacttttacatacttatacagcatacaaccacttctcatataaagatatacaacatttctagc<br>acctagaaagttccccaggggcccattgcatgtattacctcctcccccatgctgtatgcagtggtaattacaatactctccagatctgtgttatttttct<br>caacgttatgcctttgagagtcattcatattcttttgaatggcagtgatccattatttttcattgctatatagtattccattcaagttttgatttgggtt<br>gtttgcagttttggtctcctgtgaataaaactactataacaatttttaaactgagtttactgtcataatgatgacaccaagccaattggggtttccctac<br>tg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	75231546	75231547	1002020	0	+	1104685331008	NA	NA	SINE	Alu	AluYa5	aagctcaaactgtgacagggtcagggacaggtaaaattcacaaagttggtttacagcagaactgtgctacaattatctggattcagatccaagtcccctc<br>caaatgaatcacaaccacttctacctttataattccaggccatgaaagatcactgttttagtctgcgtggtgcagtggaacagatagacctcggtttgaa<br>tctcagctctactgtttactagacgtgaaatggggaaatctaaaatgagtaagtatacacagaaacacacattacatacatatatgtaatgttcaggatc<br>attacactgaactttagggcttagtactaatgtacaatcaaggttgtgttagtactgagcagtatatcttttattgttgaagtccaa<font color="green"><u>AAGAACAGAGCAG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAACAGAGCAG</u></font>atatcaacctaatttgtaagtgatgcattttcctaaactaaatgcccaataatggaatgggctagaatattgcaggacagggctg<br>tgaatggaggaaagcagttggaaaatcaatccttttaagggcacaaaaggatgaatgaaccacattcccaagaacctgctcccacccactgctgttccca<br>cccccgctgtagttggtagcatgttcacaaggaaggagctggctagctttcatgggagccacatcatccatcaaaacacattagtgttgttgatttgaat<br>gttgtttcctttgtaggtctgcttgctttgactttgtaaaattgtttagtcttgccattattatataaggactataatcataaggcatttatatttcatt<br>tt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TMC1:NM:138691:3/24	
0	chr9	10461264	10461265	1002021	0	+	1104685688749	NA	NA	SINE	Alu	AluY	ggctacaaaagcaaacataaataaaagaaacggcatcaaataaaaagtttcttctcagcaaaagaaaaaatcaacaaaatgagaaggtaatcaacagact<br>gggaaaaaacatattttcaaaccatataacaaataaggggttaatatccaagatttacacataattcatacaacttaatatagtaagaaatatataacct<br>gattaaaaactggacaaaagactcgaatagacatttctccaaagatgacataaaaatgtctaacaaggacatgaaaaagtgctcaacaccactaattcca<br>caggaaatacaattcaaaactctatatatcctcataactgttaggataactattataaaaaagataagagataacaggtgttggt<font color="green"><u>TTTTCCCCCATTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>TTTTCCCCCATTCTT</u></font>aggaaactcttgtactgtgttggtgcaggcattatgggaaacagtgtcagatttctaatgaaattaaaaatagaactaccatt<br>ctaagaaaataaaatcaccacctcataaagatatctgcaatcctatgttcattgtagctttattcacaatagtcgagctatgaaaataatctaggtgcct<br>atcaatgaaaaaatggatgaagaaactatcatagtttatgaacattattcagccttttgcaaaggagatcctgtcacttgtcacaatatgaatggaccta<br>gaggatactatgctggatcaaataagccagacacagaaaaaaacatgttgcatgatcttccttgcatgacattctttttttttttttttttttaagatgg<br>ag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:PTPRD:NM:002839:2/46	
0	chr9	21261950	21261951	1002022	0	+	1104685685766	NA	NA	SINE	Alu	AluY	aatattattcagctttttacaatggagtattatttttcataatattattcagtaaaatgtggtatatacatataatgaaatgttattcaatcttattctg<br>acacatgctgcaacatggatgaaccttgagtacattatgctaagtgaaataagccagtcacaaaatagcaaatactgtatgattgcacctatatgaagta<br>tctagagtagtcaaattcataaaaacagatagtagaatagtggttgccagaggcttagggatggcaggagctggaaggagtggagagatgttatttaagg<br>agcatagaatttcagttttgcaagatggaaaagtctggagattagttccataatgctgtgaatgcagttaatactactgaactgtatacc<font color="green"><u>ACCATTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>ACCATTTTTT</u></font>aaggtggtaaattttctgctaactgtactttatcttaattttaaaaataggtaacaagggcaacattattccttggaaaacaa<br>tgctaaaatataacttagctaaattcagcccagccaagcagtgattaaaggatgaggtagaggggaatcaacattggagaagggatgtagaccaaaagca<br>gcagatgggcatgggctcgaggaaaagtcatcattcctggtctaggggttggctttcagatttgattattctaggcttcagagttaagaaggacataacc<br>aagtcacaagagtttatatacagaaaggtaaatttttgaaagtacagtattctctgtggataataggtaagtgttaattgcactaagttctttcctagtg<br>gattaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	28960620	28960621	1002023	0	+	1104685684051	NA	NA	SINE	Alu	AluY	agcaaataattagaacacctataatcacagcattttgaaaggccaaggcacgaagattgcttgaagcctggtgttcaagaccagcctgagcaacacagca<br>agattctgtctctacaaaacacaaaagaattagccaagcatggcagtgggcacctgcagttccagctactgaggaggctgaggcaggagaatcactggaa<br>cctaggagtttgaggttacagtgagctatgatggagtcatatgatggagccagcctagatgacagggtacgaccttttctctaaaacgaacaaacagaaa<br>atgtctctgtgtgttgtgtgttatagaaaaaagttacggaagtgtcctaaaatgttattatctgtgctcatttgtgagtgat<font color="green"><u>CAATTATACATATTTCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>CAATTATACATATTTCTT</u></font>cactttaaagtattctgatattatttaatttttttgtgtgggcacatatttcatttatatgtgggaaaattatttct<br>aaaaataaataggcagatgtaacttgtaaataggttacaaaaaccacttctatgatcagtatgccaaaaatatgtttatataaaataatggttgctgagt<br>catcagaacagtccatattctagaaaatgttgaaaaaatcaagtaaatttattaattcatttgttcatttattcattcactcaagacacctttatttaaa<br>ttttaacaaaatattgaattatttaatattcactacatatgaatcactactaatcacaaggtctacaggaatggaggaagcaccatagctgtctttaaaa<br>tgacc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	26476374	26476375	1002024	0	-	1104685684735	NA	NA	SINE	Alu	AluYb9	ctatttgtggaagattgtattttagaacagtatgcaaagagtattctcttgcttgtgggttttgtcagtagatattaaaaaaggatgtcaacttttctgg<br>aattcaatggtttctaccgcacgatctgctagacttggagaaatttaacttctttattttagtaagttctgaagttttgaaatttttagtatagacaaca<br>atccaaataggaatctaaattattgatttttccaaacacagaaggatgggctaatgatgacagagaaccttttaaacctatgatttcttgcttattcatg<br>atattatactttctctttcttggttccatctttcacattaaatacccaattttaaattccattgtctaattgatttaatgat<font color="green"><u>TATAAGGAACATTTTCTT<br></u></font><font color="red">AAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>TATAAGGAACATTTTCTT</u></font>ttcagcctaaatttttcttcctaatttattcccattactcttggttaaatcttgaataactaggattgatgaggc<br>actgagagctaattaattgattgctaaagcactgtggtattatgcaactccacagtgaattctcttagttttaggaaaccttttaacagtaaactgcatt<br>ataaggctgtttttttcttatttctaggtgtttttcacaggccagttatgtttaagattttccccaaagatgccacatgcaggcataaactaataaaagg<br>ctcaatttttacttagacatgttcactttgtcttttgtttattgtatttgtggaaaaggctttcaaaagtaagtgaccctgagggaaccggttaaaactt<br>acggata	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	2326306	2326307	1002025	0	-	1104685690677	NA	NA	SINE	Alu	AluY	tcagattagaaaagaaggatatggctaacgtcacacctctagcgagggagatggaattgggacccaagggccttgactcctaatctagtgctctttccta<br>ataccacatggatgtatgaacataatagtagcaacatttgttgagtgcttacatatgctagggattatcttaagtgcttcatatgaattaatctgcctaa<br>ttttcacaacagccctgtgaggtggatgcttacttttattgttctcattttaaagctgagacaattgaagtacagagaagttaagtaacttgtcaaaggt<br>cacatggctagaaaaatatggagctagaatttgaaaccattccgtttgtgcttttctgtcattatcatcatcaccatctcatgcttt<font color="green"><u>CTTGAGGTTTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>CTTGAGGTTTCTT</u></font>aaaaattcctccctgggtttaacctcttttccattaaaataaataaataaataggccgggcgcagtggctc<br>acgcctgtaatcccagcactttgggaggccaaggcgggtggatcacaaggtcaggtgacagagaccatcctggctaacactgtgaaaccccgtctctact<br>aaaaatgcaaaaaattagccgggtgtggtggcgagcacctgtagtcccagctactcgggaggccgaggcaggagaatggcatgaacccaggaggcagagc<br>ttgcagtgagcagagattgtgccactgcgctccagcctgggtgacagagcgagactctgtctcaaaaataaataaataaataaataaaatattgaggttt<br>tctaaaaggctactta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	122155287	122155288	1002026	0	+	1104685370289	NA	NA	SINE	Alu	AluYb8	atggagatggaggctatcatcctcagcaaactaatgcgggaacagaaaaccaaataccacatattcttacttataagtgcaagctaaataatgagaactt<br>atgaatgcaaagaaggaaacaacaaatactggggtctaatggaaggtagaggataggagaaaggagaggaacagaaaagataactattgggtactgggat<br>taatacctggatgacaaaattatctgtataacaaacccccatgacatgaatttacctatgcaacaaaccttcacatgtactcccaaacctaaatttaaaa<br>cattaaaaaaattaagtgtatactagagaaatctataaactgctaaagattaaactcaattataaaatttccggaaaggttttcacttgt<font color="green"><u>AAAAAAAATT<br></u></font><font color="red">TGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAAATT</u></font>atttatgacacttgttaaaggtggtaaggcagattttattcaaagggtgtaatggccatagatgtaggaacttctacaaaagt<br>gtcttgcaatgggagagacagattgggctcatttctgactccaacaagaacaagtggagattggtaaccaagttgcagggtggaggtcaatggtaagaaa<br>atttctaaaatgaaacatcaagtgcaagtggtttgtggctaaacttacttgatgcgattattgcaacatcaggtttctgttacactccataaagaatgtt<br>ctaaaccaaaccccactcccaagctagattacatgattccatgaaactgtttttccccttctatctagtattcaattaaatatcttttataatttatttt<br>tcaatgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	117047019	117047020	1002027	0	+	1104685369132	NA	NA	SINE	Alu	AluYg6	tatactaattgctggtaagaatgtgaaacaataggttctctcattctgtgccgttgggaatgcaaaatggtacacccactttggaagacaggcaatttcc<br>tacaaagctgaatatagttttaccatacaatttagcaattacaatcttaggtatttacccaactgatttgaaagacttatattcacacaaaaacttacac<br>ataaatgtttagagcaactttatttataatctccaaaaaccgggtaaccaagatgttctgactaggtgaatgaataaacaaatatcctgacagtgaaata<br>ttattccatgacaaaaaaaaggaatatgctgtcaagccaccgaaaactatggatacattctgtattagctgttctcatgctactaa<font color="green"><u>AAAGACATAACCAA<br></u></font><font color="red">ATTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCC<br>GGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACATGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGACATAACCAA</u></font>gcctgggtaatttataaaggaaa<br>gaggtttaattgactcatagcttcacatggctgagaaggtcttacaatcatggcagaaggcaaaggaggagcaaagtcacatattacatggcagcaggca<br>ggcgagagagattatgcaggggaacctctatttataaaaccatcagatctcatgagacatactcactaccatgacacagtatggggaaaactgcccccat<br>gattcaattatctccacttggccccacccttgacatgtggggttattacagttcaaggtgggatttgggtggggacacagccaaaccatattacatttta<br>aatgcatattgagaagtaaaaaaaaccagtctgaaaagggtacatactgtataagcccatagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	129708035	129708036	1002028	0	+	1104685372199	NA	NA	SINE	Alu	AluYa5	caccatctcagtaaggaaataaggggtaccttattgctgccagccagaggtaaaagtcaagctttccacatggtctacaggtaaagggtggccttgttat<br>tgtcttgcttgaataaaagtccaatttctctacttgactttcttgacaccaccccagcaggggtattgaggcattttgttacatctttatgaggctcacc<br>cctcagcctttgctaagtctaggctcaccactcagcctttgcttgcatgacttggaataaggctaggtcatctgcagtattgtgcttgagtagggttgtt<br>attgtctaaaagttttctgtctcactaactggcccctttcctcatccttggctagagagatcaggcttttattgaagctctt<font color="green"><u>AAAAAAAAAATCTGTGCC<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAATCTGTGCC</u></font>cattggtatttctagtttgatggcttctctagtcctaagtgtggtatatattaggcaaaaacaaaacctag<br>ctaacttaccaccttgtcattcctcaggatctgaggtttctagctggtctgctcagagtcttcttatgcttgctttatgtacaatatccagagttttaat<br>tttacttagcacaagtaatagagaaaaagtatttccattcaattttcctgaaaatgaaagtccactgacactgtagatttctaagagcctgaagagttaa<br>tagaacatacaagtttttttagttagcaaaatattggagataaccttctgcttcatatgtacagatgttccctaggccacacacaaatttgaaaaacaat<br>ctaatcttcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	128980176	128980177	1002029	0	+	1104685437769	NA	NA	SINE	Alu	AluY	aattgccttagccaggttcttcctgggacttttattgtctccccagatactgaatattcaactcctctctcccgactggagctcggggtgcagtgtgctg<br>tgtgcagccccagcctcctccagggaaggggagaaggctgagcagggaaggaggcctcaatttgaggtgtatgggtaatgaggctgagggtcagggctct<br>ggacttgcaaccccagctgcttcctccctggctcacccctggttcagggatgacacccagcttccttctttggtgcaaactctagtactgcaagagtctg<br>ttaaacctgggtgttcgcctgcatccatgcaaccagcaccaccaaaaaggccaccacctcctttgccctattgacagccttgct<font color="green"><u>AAGAATCTCTCACCTT<br></u></font><font color="red">TGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCC<br>ACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTCTCACCTT</u></font>aacccgtgcatttttacaaac<br>tgctgcagccagatcagtttaggctgtgaccgtggcgggcagttctggtctctgtgggggcatcccgggtagacaccctcccatctcatgcagcctcctc<br>tatttggtgcagtgtggcccagccctggccatgccccgtgggagtgcaagaggaagcaaggaagcaggaagcattgttctagatgtcttcaatgaagacg<br>caggaaacaaagttagattgcagtgagtgaagggtgcagtggagagccagactcactgtcaagggagtagatctctaagcctagccttgctttttggtgc<br>tttctgtgcacctcttgtctgaaaaggtgtcactttgggggaaatgagctcaggggcagcacc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	118509753	118509754	1002030	0	-	1104685429625	NA	NA	SINE	Alu	AluY	ctgaggtcataaatcaaattagtaatatgaccaggattagaactcaatctgttctccccaaaggttgaattttttccaatccataaatgggcacatgaaa<br>agaacaaaccagatcactgaacttacccttctcagatgcataagtctgaattatcttctagtatatagatatggaaatccttgggaaatctgagccagtt<br>ttgatttcttttttgagatccatctctgaggattgaaaaattaaatgttttaggcattggaaatctcagtgctatagatggaattgtgtgccctccccag<br>cccttcccaccctatcaaatgttgaagccctaactttcagtgtgactgtatctggggatagggtctttaggaggtaat<font color="green"><u>CCCTATGGCCTCATTTAACCTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCGAAAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>CCCTATGGCCTCATTTAACCTT</u></font>tgaaaccctaatccaacaagaaagtagcctctgagaagagaaacagatctttctccctctgc<br>tatgggaagacatagtcagaaggtgttcatctgcaagccaggaagagagttcttgcctaaacatgaccatgctggcactctgatcttagacttccagcct<br>ccagaactgtaagaaagtaaattttcaatggtttaaatctcccagtctatagtactttttatgacagcccaagctgacaaatacatccatttgcaatgag<br>ggtacattttaaatctttaacaaatacaatctgtagttggcttcttagaacttggggaacaggacattagtttgtaaagttattgtttttccattaagtg<br>ctctacaattcaactg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	123055182	123055183	1002031	0	-	1104685100250	NA	NA	SINE	Alu	AluY	atatttttgccatagtttacttatttcacttgagaattagttaattcaacaaacatttattgagcatctgctatgagcagtgtccttttgactcagtctt<br>acagatttctgccagagaattttacctctattctgtgatactacttccccaggggcaaacaggtgccagactcccccaggggcaaacaggaaacaggtat<br>caggtgctcgacaggggatgatttaagagtctggcaatgtagctgtaagaatgtggatctttgattcagaaacaagggaaacaagaactccagattctcc<br>aagtttatgaacaaaagataaactaatcatgagcaaatagcaaaactaagtaagcataatacaaaattaataagacataccttttagaa<font color="green"><u>TCCTTTACTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>TCCTTTACTTT</u></font>attaataataaactactatttactactgagaattcaaccctcctaaaccctgtttggtgattgcataatgttagtttatatt<br>attgcttaagagggggctgaggttgctaaaatgagattctcttcagtttatgctaccttcattcctactgatgttttttgagactctcttggcttaaaat<br>agagggatagttcttaaataaaaaatggtctgtctcttctagggataaatttttctttgcttcaattcctctttactttcagagccatgttaatactact<br>ttaaactgacttactgctctttttttttgaaacagggtgcgactctgtcacccaagctggagtgcagtagtaccattatggttcactaaaacctttgcct<br>cctgggc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	79583172	79583173	1002032	0	+	1104685332218	NA	NA	SINE	Alu	AluYa5	aattgtaccaggaatgtgtacatctgtgcatattgtgggagggagagtccacagcttttataagattattagagtaattctctgccagtcatcagggtga<br>tcacacatcttttgcttttctctcttcctggcccataagcagatggcactgtcccacctctagaagcaaatacatccatgtgacttggggcactgaaatg<br>tgagagtgactttgggcacttttggacagaaaccttaagagacaaagcttaccacatttcatttccctctggtatcatggttggcaatggtcaaaatggc<br>agcaactccattagctcaggcccctgagggtctgcaaatcggccggtccctcctgccaatccaaaatggacatgtagtgtgag<font color="green"><u>AAAAAAAAAAGCTTTGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAAAAAAGCTTTGA</u></font>tgttttattccaaggagatcatacggctatttgttcctacagcacaccctcatttgtcatcgccgatacacatctttaac<br>ccctcaaaagttaaagatcactttaaccctaatgaatgaagtcctaacagaagacgaattccaggaagaatttcttcttctcttcataccgatgagagcc<br>atatactatattgaattctgccttagtattccaattacctctgagtaacatttctccctatggtagcatatgacacattgctcttttttccttcgtaagt<br>cacacacaatcactcatgaaggaaaaaattgtgcacgtaagtgccagaagctcctaggagaaggaagcatgatcatgaacagcttacagaggggaagaat<br>tcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr9	95282347	95282348	1002033	0	-	1104685126714	NA	NA	SINE	Alu	AluYa5	ttttaattatagctgttcttgtatgaagtggtatctcattgtgcttttgatttgcatttccctaacaactaatgatgttaaacatctttttatgtgcatg<br>ttgtctatctgcatatcttccttggagaaatatctattcaacccctatgcctatttctttctttttttaagagatggggtcttgctctgctgtccaggct<br>ggaatacggtggtacaatcatagctcactgcagtcttgaactcctgggcttcagtgatcctctgcctcagcctcccaagtagctgggactacaagaatgc<br>accaccacacctggctaactttttaactttttctgtagagacagcatcccattatgttgtccaagccgttctcaaattcctggcctc<font color="green"><u>AAGAAATCTTCCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAAATCTTCCC</u></font>ccctggcctcccaaagtgctggaattacaagcgagagccactgtattgggcaagttttgcccatttttttattgc<br>attgcctttctgtagttgagttgtaagagttctttatgaatattctggatatcaggaccttatcagatatatgatttcacatattctctcccattgtgta<br>caccatcctttcactttcttaacaatgtcctttgatgcaacaaatttttaattttgataaagtctaatttatcttttactttaggtgtcacatctaagaa<br>tccactgccaaatatgaggtcataaagattttcccctatggatttttctaagagtgttgtagtcttagctcttatatttacagcaaaggtctaaatataa<br>gatatattaggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ECM2:NM:001393:2/10	
0	chr9	103362640	103362641	1002034	0	+	1104685433398	GGCAGAACCTGAGCTCCTACT	CCAATTGTAAACTCTCCACCTTC	SINE	Alu	AluYa5	aagcaggcaacactttcatggaacaaaagagcttactcaactcttagaaaccacgactacccctacattcagatttgtcgaaatcctggttccaccaacc<br>agcagaactcaattctaagcgattctttctcagcacacttcctatgtgtgccattatattgagagagctgaattcagaggagtatcaggagagggaaact<br>gttcttttcccactgaccatctcaggcatattcttacaacttctttcgtcactctcagataataaaaattcttctagttacttttagacccaaagtaatc<br>ttatttgagttatgaaaattccagtccaatatcaaaatcatataacaactttctctatccaattgtaaactctccaccttcagtgaagtctt<font color="green"><u>TTTTTTTT<br></u></font><font color="red">CCATGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCT<br>AAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTTTTTT</u></font>aaacccatgccaaagggtttatttaaaaagcaatcgtcagtagtcatttgccctacttctgtctccagccacgg<br>ttccactgcctagaggaagccattctaaacgcttatttttgtgtttagtaaattatagttgttgataaatttacgttaaccctggcttctcagtaggagc<br>tcaggttctgccacttggcgatttaatgtttgggagacgtgagagatgactcagagacatgctgtgacatttcatctcctcacctggactcccctccacc<br>cattttcttgagatagcaggtagctcgaaggcctgtatgaagccccaaaaggccaggattgctggctgtcagccaaaaggccttatcacaagccatgctc<br>gctgttgtctagtaattt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	554	229	NA	intergenic
0	chr9	104223891	104223892	1002035	0	-	1104685433195	NA	NA	SINE	Alu	AluYa5	cagacaagagtccctgaccccatagagcttacattctagcaagaaaacaaatgtttaaaaagtatacagataaaacacaatatgggtgtttcatattgtg<br>gctcatataggcatggtggctcatgcctataatcccagcactttggaaggccgaggcaggtgaatcacctaaggtcaggagttcgagaccagcctgtcca<br>acatggtgaaaccccgtctctactaaaagtacaaaaattagccaggcatggtggtgcgcacctgtaatcccagctgcttaggaggctgaggcacgagaat<br>cacttgaacccaggaggtggaggttgcagtgagccgagatcgtgccattgctctccagcctgggcgacagagtgagactccatctcaaacaaaac<font color="green"><u>NNNNN<br></u></font><font color="red">CAAAAAACACAATAGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCAGGTCAGGAGATCGAGACC<br>ATCCCGGCTAAAATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGACGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA<br>GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA<br>AAAAAAAAAAAAAAAAAAACAAAAAAAAACAA</font><font color="green"><u>NNNNN</u></font>acacaatagcatttcagattgtgataagtgctataaagaaaagcaaagctgcttaaggatgta<br>gaagttgtgtgggttatttctgataaggtgttataaagacttctctgaaatgacatttaggtagggatatgaatgatatgaatgagtgaactatgtaaaa<br>atctggagtgtagcattccaggcagaaagcacagcgagtagcataagttcctgaggaggacatagcttggcctgtttaaggagcaataaggtcagtatgg<br>ctggggtacaaagagaaagagggagtggtcagagatgaagtgggagaaggaagctcttttaggtcacagttaggagctggcattttattctcagtgtgat<br>gggaagctactggagaggtgataagtttctga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	45318884	45318885	1002036	0	-	1104685518718	NA	NA	SINE	Alu	AluYa5	aaagcagaattctaccaggtgttcaaagaaaagctagtaccaatactcctgaaaatattccaaaaaatgaaggaggaattcctccctaactcattctata<br>aaaccagtatcatcctcataccaaaatctgtcaaagacataatgaaaaaagaaaatgataggccaatattcctgacgaacatagacacaaaaatccttga<br>taaaatactagcaatcaaaatccagcagcacattctaaaagttaattcaccacagtcaagtaggcttcattcctggtgatgcaaggatggttcaacatat<br>gaaatcaataaacatgattcaccatataaactgaatttaaaaaaataacatatgatcttctcaatagatgcagaaaaagcttttgat<font color="green"><u>AAAATCCAACATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAATCCAACATT</u></font>cttcatgataaaaaccctcaacaaactagccatcaaaggaacatacctcaaaacaataagagccatctatgacaaaccc<br>acagccaacatcatactgaaaggacaaaaccttgaaatatcttcactaagaactgaaacaagacaaggatgtccagtctcaccaccgctattcaacatag<br>tactgaaattcctagccagagcaataaggcaagagaaagaaataaaagacattcaaataggaaaagagaaagtcaatttaccctttttgctgatgaaatg<br>attctatacttagaaaaccctacagactccatcgaaagggtcctggcactgataaatgacttcagtaaggtttcagggtacaaaatcaatgtacaaaaac<br>cagcagca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	34242454	34242455	1002037	0	+	1104685752389	NA	NA	SINE	Alu	AluY	atatctttggcactagcttccagtggattccctggagctaactgtgtaaacaactgctgtctctgaccttttgttgcaagcatttacaaaagtagtacat<br>tttaaacatatgttgaatataaggctttatgttctgcaatgggtatgtagcagtaaatgaggcagatataatctgggagtcaaatgttattaaactctag<br>cagctctgcaaggtactttataacatgagagacacacccagccacccacccctattccccaaacacagaaatatagttggtaaaaaaaatgcaaaacagc<br>aaagtgtcagttcaattggtgagcataaattcattaccacaggcaagtaatttcatggctatttgaaacacaagaaataactctagaag<font color="green"><u>AAAGAAATATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGAAATATG</u></font>agtgatggagagttgtacctagagaagctctcagcctggaataatacattttacacaacccacagaaaaatgcaaatagaaag<br>atgttgttggatatgctcaagcggaatggtgaaataaaaccgggcagaaaaaaaagacaatcttagtcacttaatactaagtgttttgccagtacactgg<br>tgaaatatacaaatagttaacaacagaagtgctgaacttcatatgaccattaagattattctttgatatttatacataatttttcaagcctaataccttt<br>aattctatagaaaatcccctttcctccccagatttatgcaaacagcatagaatctttattctcatggtaaattcttgttcctcctactttccaccaacaa<br>acttta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	145897765	145897766	1002038	0	-	1104685543789	NA	NA	SINE	Alu	AluYb8	aattagagacctaatttcttacctaaagaatatagaaaggaagagaaaaataaacccaaagcaaacagaaggaagtaaatcataacgataaaaacaaaaa<br>tcaatgaaattaaaagcaggaataaaataggaaaatcaattaaacagaaagctatttctttaaaaccgtcaacaaaattgataaaacttaagcacaactg<br>acagcttaaaaaaaagaagacaacaaataaacaatatcagggacgaaaaaggacatagcattacagatttttcaggcattaaatggataagagaatactg<br>tgaacaaccgtatgctcataaattcaaaaatatagaaaaaattgatcaattcgttagaaaaacacaaactaccaaaaataaattt<font color="green"><u>AATAAAATTATATAG<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA<br>GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATAAAATTATATAG</u></font>tgatataattagtcctgcaactaacaaaaagaatgaatttgtaatttaataagtctcttgtctgtcacc<br>atgtgagatgtgcctttcaacttgcgccataattgtgaggcacccagccatgtggaactgtaagcttattaaaccgctttattttctaaatttctcagtc<br>ttgggggtgtcttcatgagcagcatgaaaatggaccaatacagtaaattggtaccaaaaacaccctgatttttcagttccaacctttagagctgtgataa<br>ataaatgtctattgtttaagctacccagtctataggattcttttatagcagcctgaaatgactaaaacaattatatatgtctattacctagaaattctgt<br>tcctgaacatacacct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	149451325	149451326	1002039	0	+	1104685361673	NA	NA	SINE	Alu	AluYa5	ccataaggtagagagaagaaggaagactgtctagagaacttgatacttgaggaatgacatggcagagagttttctgagttttcttatttcctttcatata<br>tcccatacatgacactacagatactttcaaaatggaatagtcaacaggcacaaatttttataaggcaagcaagaaaacaaacacaatacaaaaaaaaatt<br>ttctttctctatccaaaggattaggaagaaaatgacctagcaaaacagaaactttttttatatgatccacccttctctaactaaacaacaaaggaaaaac<br>ttccttccccccatcctacaatgtcagcaaggtcaggtggggagctgaatttttgtccccatcatgatagcaagaaggtggaaca<font color="green"><u>GATAGCGAGAGGTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GATAGCGAGAGGTTG</u></font>tgctagttgccactccactgatcctgataagatagtgtcagcagagcct<br>agccacccccacctgttggcagcaagccaatgcaaggtggtgcaatttagcaatctgcctttgcaggggtggtaatagcagggtattagtggggagcaga<br>acatctaccactacctgaacctgcatactatacctcaacagggtgaactgcctacataaacgcagattaaataggatacaaaatctcaacatgatacccc<br>aaatgtccaggatatgttcaaaaatcacttgtcatgcttagaaccaggaaaatcacaacttgaatgagaaaagacaataattgtcaacacctagatgaca<br>gaggtgttagaattatctgatgaggattttatagca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	126290693	126290694	1002040	0	-	1104685473402	NA	NA	SINE	Alu	AluY	tcctggagcagcttgcattcagcttccagaggcagaatgggaaatatggatgctccactcccgatgaatgagatctatgttctgattgctgattgctgct<br>tctgattgcagaggtgcagacacagagatgagcagccattattgtaaccctcaccaactttgttgccacttcttcctctctggctgaagtaattctcctc<br>cctccctgaattcattctcgctttttttcctgtaagtaaccagacatttaagaactgagacattcaaaagcacccacatgtgtgaaaaatttagaaagtc<br>accacacatgcccaagcaaaggcacaagatcactaaatacctgaaaaggcctgaagtttacacctcagaattatatagcctac<font color="green"><u>AAGAATTGTAAAAATAA<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG<br>TGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCAC<br>TGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGTAAAAATAA</u></font>taaataaataaataaaacct<br>gaggaagagggaaaacctgaattccaaagttcccacactataagatacaaatggtcctcttttacaaaaaatcacaaagcatacagagaaacagaaaaat<br>gtggcccattcaaagaagaaaaattaaaagtccagaaactattgtggacaaaaacctgatacagacttactaaataagcacttttaatacctgtattgaa<br>aataatcaatgaactaaagatgacatagagaaagtaaattaaataatgtattaacagaatagaaataccaacaaagagagaaaacagtaaaagaaacaaa<br>aaaattatggaattaaaaagtacaaaaactggaataaaaatttcactagcaggactaataaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	136349840	136349841	1002041	0	+	1104685691986	NA	NA	SINE	Alu	AluYa5	aggatgagctgagaatttgcatttctgacaagctcccagctgatgctgatgctgctggtccagagaacacacttcaacaaccactggacttgccaagtag<br>cactgacactggaaattataaatattgacagtgatggtagggcaaggtatgaaaggtatgaagatggtcaagaaagtttgcaattgtggagaatgtgaga<br>gaattgactagagaaacaatataaatagtgtcagtgtaacaaaagttaaagttttgactgaggcatcaagataccatagatattgaagcaattagtgaga<br>caggccaccctgtatgaatttcaaagtagcgaaccaataactgatttcaaaactcttaagcccttcactcagtatgggttt<font color="green"><u>AAAAGCTCTGGTTGGTGGA<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAATAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCTCTGGTTGGTGGA</u></font>tattaggggtacttgtaaggaatatttctagtaagagggctgttctgtgagccctccttcc<br>caagatggaagggtacagagtgcttctccctctacatcaagtcaggagagaggaattttaaggaccacttagcttgatatgtgacttctgcagttggaca<br>gatatggtcacatggtgtctgactctcacctggaaaatgtaaaaggctggccagtgctccaagagcaggagcaaaaatgttggtgctgtgttgagatatg<br>cctgctctcccagaatctgtcagagcaagggacatgtacgtgtaccccagggatcagacaaaagccacacatgcatgagagatcttcaggttaatggctt<br>tctgcactgtggaggtttca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	116838865	116838866	1002042	0	+	1104685359195	NA	NA	SINE	Alu	AluY	acacacacacacacacacatacactggattctcaactttttcaagaaatggctatcagtacagaggtcaaatattagcaatgtttctgtctgaaggattt<br>ttgaaaaattactatccttttctctaaacatttctatattttctaatctcctcaaaatctccacaaatttctatattttctagtcccctcttaaaaatag<br>aaaaaatatatttaccatgcctagtaactaatcaaaatctcggtgatataggccatttttctgcaacttaagataactgcataaatttcaaattcttttc<br>caagaaaacattcagttttagaacatgtcaggtttaatagtctttgcatttccaaccaatatttctataattaacatggaatgctt<font color="green"><u>TTGATTTATTATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAAAAT<br>AATAATAATAATAATAAT</font><font color="green"><u>TTGATTTATTATTA</u></font>aacaaaaaaggaaaaggaaaaaaagaaaattgtcttgggaattgttactaatatgttaacagaatgca<br>gacatgaatttaaaactgaactaatctatgtagccatttcaacatgacataaattagaggaggatattattcatatctctattcccatcaaagataaggt<br>agggtaaagatgagaaaaacgtgtgagtataagtcatgttcaaaaagtaggagaaactgatggtgaacatttgtttccttatgctacatgctgcaacaag<br>ttagcatcatgagtttccttgcaaataaatattggttttgaaagtatgtatacattttattgaaacatactgtatatttgagtgtgctgaaaagcctgtt<br>tgtaaggctattaaatta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	119527857	119527858	1002043	0	-	1104685492350	NA	NA	SINE	Alu	AluYa5	tctatctatctatctatctatatatatatatatatatatatatatatatatactgtgtattcattcatttgccaatgaacacttagattgtttttctatc<br>ttggctactttgaataatgctgcaatgaatatgaaagtgcagacatgtctttgagatagtgattttatttcttttggatatatacccagaagtgggttgc<br>tagaccctgtggtagttctatttttaattttttgaggaatctctgtactgtttttcataacgtttgtaccaatttacactccctcccaccagtgtacagc<br>agtgaaagcgtttccttttctccacatctttaccaacatttgttattttttgacttttttaatagaaaaaaaatctaaaatgctta<font color="green"><u>TCTGTTGTGGTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>TCTGT<br>TGTGGTTTT</u></font>atccacataactaaaacaattttgagcagtaagaacaaagctgcaggcatcatatatcctgatttcaaactatagtaccaaactatagtaa<br>tcaaaatatggtactggcataaaagcagacacacagaccaatggaacagaagagagagcccagaaataaacccacacatgtatggtcatctaatcaacaa<br>ggtgccaaaaatatataatggagaaacaatagtctctttaataaatggtgttgggaaaactggatatgcatattcaaaaaaataaaattggattcttatt<br>ttacaccattcacaaaaatcagttcaaaatggatcaaagacataaacataagaccttattgtggttttgattggcatttctctaaaaagtaatga	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	122672378	122672379	1002044	0	-	1104685357089	NA	NA	SINE	Alu	AluYb8	tccaagcccagttctgccccagcatcagggaagccaccacagacccgggtctccccttgtggatccatgctccaagcctgccccagtggactccggtgcc<br>atgctggccccatagacccaggcaccagttttatccaggcctgactgtttgcaggcagacccttgcagcaggcccgtctacagtgcccacctgtgtattc<br>aaacagaatttctggccaggatgactgatggagggctttccctgccaaagacagtctgtaaggactggaaaaggtgcttacttcttcaaatacatcgaca<br>ccaatataagccaacaaggatcacaagagatccaataattatgacaccaccaaaggaacaaaataaagcaccagggaccaactct<font color="green"><u>AAAGAAATGGAGATC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATGGAGATC</u></font>acaagtgacctcacaaagaattcaaaataattgtttttaagaagctcagtgagctacaagaa<br>agcgcagataaacaactgaatcaatcaagaaaataatacatgaacaaatgagaaggtcaacaaagaaaaaatataaaaaaagaaccaaattctggagctg<br>aagaacacaatgactgaactgaaaaattaaatagagagctccaacagcagacttgatcaagcaaaataaagaatctgtgaacttggagacagatcacttt<br>aaattatctagtcagagaaacaaaacaaaaaagaaatgaaaaaaggaaagcctacaggaccatgggacactatcaaaagaacaaatatatgcattatggg<br>aattccaggaggagcagagaaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	151012901	151013071	1002045	0	+	1104685490556	NA	NA	SINE	Alu	NCAI	acaggtgtgagccaccatgcctggcccagtaaggttttaatcaaaggagtaacatgatcaaatttaatgactctgaaaagattggaaacaacctaaagat<br>ccagcagtaaggtattacgtttgttatggtgcatccatccagtggaatactaaatactaggcaacattttgtttttgagacagtcttgctctgttgccca<br>gtctggagtgcaatggcacaatcttgctcactgcagcctcaacctcctaggctcaagcaatcctcctgcctcagcctcccaagtatctgggactataggc<br>ccacgccaccaaacctggctaatttttatatatttttgtagagacagggtcttgctatgttgcccaggctggtcttgaactcctggcctcaagca<font color="green"><u>NNNNN<br></u></font><font color="red">CNNNNNNNNNNNNNNNNNNNNGCCCAGAGCTGTCACCAAAGCCAGTGTTTTAAATCAATATATTATACTACCCCTAACATAGGAGAAGGAGAGGAGATGG<br>TAGAGTAGACTGTAAGAAAAGGACTCCTGGCTGGGCATAGTGGCCCACACCTGCAATTCCAGAACTCTGGGAAGCTGAGGCTGGTGGATCACTTGAGTCC<br>AGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACTCTGTCCCTACAAAAAATACAAAAAAAATTAGCTAGCCATGGTGGTGTGCCTGTAGCCGCAGCT<br>ACTTGGGAGGCTGGGAGGATTGTTTGAACCCGGGAGGCAGCGGTTGCAGTGAGTTGAGATAGTGCCTTTGTACCGGTCCAGCGTGGGC</font><font color="green"><u>NNNNN</u></font>gcttgag<br>caacatggagaaagcccatctctactaaaaatacaaaattagctgggtatggtggcacacacctgtaatcccagctacttgggaggctgaggcaggagaa<br>tcgcttgaaccggtgaggtggaggttgcggtgagccgagattgcgtcactgcactccagcctgggcgacaagagcaaaactccatctcaaaaaaaaaaaa<br>aaaaaagaagaagcagctctttctattgctatggaaagatcatgcagaatggtgggtataatatattatcatttgaataaaaagctaaagaggctgggtg<br>cagtggctcattcctgtaatcccaacactttgggaggctgaggagggcagatcatctgagcccaggagttgggaccagcctgggcaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:BNIPL:NM:138278:4/10	
0	chr1	210918500	210918501	1002046	0	-	1104685477986	CCCTGAGATGTAAATGTTAAACAAA	TTTTTCTTCATAGCACTTAAACAATTT	SINE	Alu	NCAI	aatacagttttggatgcgaaaataccagaatttctaggttaaaaaatggagcagaatagttgaatcctggctaccctagaaaaatccaggggatggaagg<br>cacccataaaccatttcctcagagaccttcccttgctctcatgctcccaatccaggttagtccccacattggcttttactcatggcatttttttttcttc<br>atagcacttaaacaatttattattattattattgagacagagtctcagtctgttacccaggctggagtgcagtggc<font color="green"><u>TCTACTAAAAATACAAAAATTAGC<br>CGGGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTGTTCTGGAGGCTGGAGACACAAGAATCGCTTGAACGTGGGAGGCAGAAGTTGCAGCGAGTGGAGGTC<br></u></font><font color="red">G</font><font color="green"><u>TCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTGTTCTGGAGGCTGGAGACACAAGAATCGCTTGAACGTGGGAG<br>GCAGAAGTTGCAGCGAGTGGAGGTC</u></font>atggggtttcgccatgttggccaggctggtctcgaattcctgacctcgggtgatccacccgccttggcctcccaa<br>agtgctgggattacaggagtgagccaccatgcctggccaacaatttataattttacatatgtaatctttgtttaacatttacatctcagggtagctttgc<br>cacctgctttatccccggtaactaacggcgcttgggtcttgtagggtgggtcccatggatctttggctcccagacactaggcatatttttcaatgtgtgg<br>t	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	377	NA	intron:KCNH1:NM:002238:10/11
0	chr1	191088719	191088720	1002047	0	-	1104685258281	NA	NA	SINE	Alu	NCAI	acgactttaggtatatgatagtacttgaacctcaaaggaataagacagttattgtgaaggcattctaagtgaaacaaatcggataagaaaagaaaattca<br>gtgacagtttgacttcctctataccgacttggatgtcctttctttctttctcttacctgattgctctggctgcaacctctgcctcctggactcaagtgat<br>tctcctgcctcagcctcccatgtagctgggattacaggcatgtgccactgcgcccgattaattttggtatttttagtagagacgaagtttcaccatgtta<br>accgggttggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccatgtagctgggattacaggcatgtgccactgcacccgacta<font color="green"><u>NNNNN<br></u></font><font color="red">AGTATTTTTAGTAGAGACGAAGTTTCACCATGTTAACCGGGTTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCATGTAGCTGGG<br>ATTACAGGCATGTGCCACTGCACCCAATTAATTTTG</font><font color="green"><u>NNNNN</u></font>tttagtagagacgaagtttcaccatgttaaccgggttggtcttgaactcctgacctcag<br>gtgatctgcctgccttggcctcccaaagtgctgaagctacaggcatgagccactgtacctggcccctaaatattttttgaaatgatattgttttactatc<br>aaaacctgttcttgattttattcccatccacattctcagggaattttgccgtaacttatatttcttcaaacttcacctcataatatttcctctctactga<br>ttatattttaccagcacttaaaattctcatgtcttgatcactttaaaatactctcctttgtgttctgtcacttttaacttctttttccatttttttcatt<br>caataacaaatttccaggaataaattgttcacaact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	246816183	246816184	1002048	0	+	1104685304636	CCTGTGTTACTGCTTGGGTCT	GAGTTGCTCTCTCCTAGATTAAAAGC	SINE	Alu	NCAI	ttcagaggtccccttgtgagcagattttagcaacatgatatgctgtgtggagataaaccattcatttttcttcattaacatctacatttataatctgctt<br>gcagaaatgtcatatgttcagaaaaatatattaagtgtttcagattgaagtgatttttgtttttagaaataatttcattatttctaaaatctgaggaaga<br>agccctgtgttactgcttggnnnnnnnnnnnn<font color="green"><u>CGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATC<br>CTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGC<br></u></font><font color="red">CGCCTGTAATCCCAGCACTTTGGGAGGCTGAGG</font><font color="green"><u>CGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAT<br>CCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG<br>C</u></font>gcagtgagccgagattgcaccactgcactccagcctgggctacagagtgagactctgtctcaaaaaaaaaaaaaaagaaagcttttaatctaggagaga<br>gcaactcatgttccttgccctctgtctagattagcaacatttacttaaatgttttcagaactgcttgtatcacatgaagcaaaatacaggggaggacata<br>agttcacagtgtctagtggggagaaaaatgaca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	498	364	NA	intron:CNST:NM:152609:9/11
0	chr10	31001280	31001281	1002049	0	+	1104685337396	NA	NA	SINE	Alu	NCAI	taagtttgtagtttttcgtataccatccgcatgaaatttctggtcttttatgtaaagtgaaaataccagtaattaatatcttatcacatttttatgtttt<br>cattgatacaattagtttaatatcactgagtatgtgcaattgattatcttcctgaaaaactctttagcaataaataacatatgaaaccttccacccaatg<br>ttatagtgaatgtggatgtataagatgctgtcgtttgctgtcagtcatattggagttaatcccatggtaggaaggcagacagatgactctacaggtgaat<br>tca<font color="green"><u>GAGTCTATACTTCTTGAACCTAACAAAACGCTGTGTATTCCTGGAAGGGAGAGAGAGGCTCTATCTGCAGCTTCTGGGTGGAGCATTTTCTTCCTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAAAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTG</font><font color="green"><u>GAGTCTATACTTCTTGAACCTAACAAAACGCTGTGTATTCCT<br>GGAAGGGAGAGAGAGGCTCTATCTGCAGCTTCTGGGTGGAGCATTTTCTTCCTCC</u></font>aggttgattataggtcactattgtagtcacaggcatgaaactaac<br>atcttatataaacattatccatgtgttgttatgaactactcgtaacttgcattttaagcatgaagtcatgagttctggcaaagaagaaaagatttcaagg<br>gaaatcagcgaaagacagtgtctcccttgggtctactgacattgcattctgtgtaactacaggaaaaaactctcaagaagccagtccccaagtcttacct<br>tatccatgctggtctggagcccctaacattcaccaatatgtttcctagctgggagcac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	14484815	14484816	1002050	0	+	1104685342302	NA	NA	SINE	Alu	NCAI	gccactcaatgcactatggtaacttgttacaggaggaacagaagaccaatgcagcataactgtatgagtctgcaacaaaattttagcaaaccatgccaag<br>caatttacaaaaaatataatatatcatcaataagtgagatagtcccaagagttgaagattggtttaacatttttgaaaaaaaatctataattgaccatat<br>taacaagtttaaaaagaaaagccatttgatcatctcaaatagatacagaataagcatttgacaaaatttagcacctgttcacggaaagaaaaccacaaac<br>ctctgccaaataggaaaagaaggaaatttcttcaccttaataaaatatatctactaaaaatctacagcttacattataactcactataaaagaag<font color="green"><u>NNNNN<br></u></font><font color="red">GGCCGGGCGAGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGGAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTATA</font><font color="green"><u>NNNNN</u></font>atgtctatacttacc<br>acctctattcaatattgtacctagccagtgtaacaaaacaagaaaaaaaaaggaatagacttggagaaaaagaaagaaagctcttcttttcacaaatggc<br>atgatctaattctaaaaaaccatttttaaaaaggctactagaacaaataagggagtttatagcaaggccacaatatacaagatcaacatagaaaaattca<br>gtgtacttatatatagtcgcaataaaaaattgaaaattgggaagtgaattatactaaaatctgaaacattttgctgagaaaaaaatttaaaaaaacataa<br>ataagtggagagatgtatcatttcatggatggaaagacaatgtggttaaaatcctagcaggcatttttggtagaaatttt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	103048566	103048583	1002051	0	-	1104685399546	GCCCCCTCCAAAGTAAAATATC	AGGCCATATTGACATGGACAC	SINE	Alu	NCAI	ccaggaaatccgcagttttaccacttaaattttcaaaagtattcaaaatactttattcaaactaatgagttaatactgttcatacacaccaattttaacc<br>ccaaacaaaaatctgtcatcttgtttatttctgaggcagtataatatcaactcagcaaagattttatattcattcagtaaattaatctagttgtgaatta<br>caattcacccaacttactctaagtttctattatattaaaaatagttacagagtttaactgaaaatgatagcatgtcttggccccctccaaagtaaaatat<br>caaatgtacatcattttaacttaattatgactttatggtcatgtagaagtcttgacaaagacagcattatagacaaattatatcattatctaaga<font color="green"><u>NNNNN<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCTTAGATAAATGAGGAAAA<br>AACAGGGGGATTACTAGTAAGCAAG</font><font color="green"><u>NNNNN</u></font>acatagagactaccttgaggtcccgaaccacttgacgagcactatttgtcaaacaccatcagaccattct<br>cttgtgtccatgtcaatatggcctaataattgatatcgaggcatagctttgggattcatagtatattgtttcactactttgccagttttacaaagcgcag<br>cccttaacattctccaaagcgttgattttccagcaccacttggaccaacaataacaactcccatcctctggcataactgttcatacaattctaaagcctt<br>tttgatctagtaggaaagaaatatgttcatatatgatttataatattcaatcatacttagttctgcttttattctgtaacacttgttctaatgtgtaaat<br>taagcctttgatttcttcagtggaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	545	238	NA	intron:DYNC2H1:NM:001080463:38/90
0	chr11	106066221	106066222	1002052	0	-	1104685398679	TCTGAAAAGAACTAGAAAACAAACAG	AAAAGAACTTTCCCGGAGGA	SINE	Alu	NCAI	tgattacatcact<font color="green"><u>TTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAAGTGATCCACCTGTCTTGGCCTCCCAAA<br>ATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACGGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTC<br>CTTACCTAAGGTGATCCACCTTCATTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGAC<br>AGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTGAGGTGATCCACCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAC<br></u></font><font color="red">GTGGCTCACGCCTGTAATCTCAGCATTTTGGGAGGCCAATGAGGGTGGATCACCTTAGGTAAGGAGTTGGAGACCAGCTTGGCCAACATGGTGAAACACC<br>GTCTCTACTAAAAATATAAAAATTAGGGCTGGTCGTGGTGGCTCACGCCTGTAATCTCAGCATTTTGGGAGGCCAATGAAGGTGGATCACCTTAGGTAAG<br>GAGTTGGAGACCAGCTTGGCCAACATGGTGAAACACCGTCTCTACTAAA</font><font color="green"><u>TTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCC<br>CAACCTCAAGTGATCCACCTGTCTTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACG<br>GTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTAAGGTGATCCACCTTCATTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACC<br>ACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACAGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTGAGGTGATCCACCCTCCTTG<br>GCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAC</u></font>aggcagaggttgc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1021	884	NA	intergenic
0	chr11	129455361	129455581	1002053	0	-	1104685189147	CCTCCCTCATTAACCAGCACT	GCCTGGGATTTGATTTTCTGT	SINE	Alu	NCAI	aacatttattgagcatttgctatatgataggcatcattccaaatgctttacaatctcacaatacccatgagttagatactactattatcatgctcatctt<br>tttttatagatgtgacaact<font color="green"><u>GTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGAATCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAA<br>ACCCTGTCTCTACTAAAAAAAAAAAACACAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGC<br>TTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGAATCATGAGGTCAGGA<br>GTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAAAAAAAACAAAAAATAGCTGGGCTTAGTGGCAGGTGCCTGTAATCCCAGC<br>TACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCCTGTAATCCCAGCACTTTGGGAG<br>GCCGAGGCGGGCGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAACCCAAAAAATAGCTGGGC<br>ATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGATCCTGGGACACAGAGGTTGCAGTGAGCCAAGATCATGCCA<br></u></font><font color="red">TAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAA<br>AAAAACAAAAAATAGCTGGGCTTAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTG<br>CAGTGAGCCAAGATCGTGCCACTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGAATCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA<br>TGGTGAAACCCTGTCTCTACTAAAAAAAAAAACCCAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br>AATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCA</font><font color="green"><u>GTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGAATCCTGAGGTCAGGA<br>GTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAAAAACACAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAG<br>TTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTACCTGTAATCCCAGCACTTTGGGA<br>GGCTGAGGTGGGTGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAAAAAAAACAAAAAATAGCTG<br>GGCTTAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTG<br>CCACTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCT<br>ACTAAAAAAAAACCCAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGATCCTGGGACA<br>CAGAGGTTGCAGTGAGCCAAGATCATGCCA</u></font>aagaggtaaagtaacttgccataggtcacactgctcgtaagtgacagggccatgattgtgctcaggaagt<br>ctgaccccagagccaactctcttaactattgcatgattcagcctccctgt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1353	1124	NA	intergenic
0	chr12	3877466	3877608	1002054	0	+	1104685486627	NA	NA	SINE	Alu	NCAI	attttttacaatgtaattgatatgcagaaaggaaagaaaatggaatcgtacaaaatgctcagtaaaactcagagaaggtggggaaaggggaaaatttgaa<br>aaggaaacaaagaataagtacaaaaaaaaagaagatagttagaagtgtgatagacagtaatccaactatatcaaaaatcactttaaatgtgtgttctagg<br>ccgggaagcctaggaagccaggcttaagaataagaaacaaggccaagtgtggtggatcacacctataatcccagcactttgggaggccgaggcgggtgga<br>tcacccaaggtcgggagttcgagaccagcctcaccaacatggagaaacctcgtctctactaaaaatacaaaattagccgggtgtaatg<font color="green"><u>GCTGGGATTACA<br>GGCGTGCACCACTACGCTTGGCTAATTTTGTATTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCT<br>GCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGCGCCACTACGCCCAGCTAATTTTGTGTTTTTAGTGGAGACGAGGGTTCTCCATGTTGGTC<br>AGGCCGGTCTTGAACTCCCGACCTTGGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGTGCCATTACACCCGGCTAATTTTGTA<br>TTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTGAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTA<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCCAAGGTCGGGAGTTCAAGACCGGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAAT<br>ACAAAATTAGCCGGGCATAGTGGTGCATGCCTGTAATTCCAGCACTTTGGGAAGCCGAGGCAGGCGGATCACCCAAGGTCGGGAGTTCGAGACCAGCCTC<br>ACCAACATGGAGAACCCTCGTCTCCACTAAAAACACAAAATTAGCTGGGCGTAGTGGCGCACGCCTGTAATCCCAGC</font><font color="green"><u>GCTGGGATTACAGGCGTGCACCA<br>CTACGCTTGGCTAATTTTGTATTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCTGCCCACCTCGG<br>CCTCCCAAAGTGCTGGGATTACAGGTGTGCGCCACTACGCCCAGCTAATTTTGTGTTTTTAGTGGAGACGAGGGTTCTCCATGTTGGTCAGGCCGGTCTT<br>GAACTCCCGACCTTGGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGTGCCATTACACCCGGCTAATTTTGTATTTTTAGTAGA<br>GACGAGGTTTCTCCATGTTGGTGAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTA</u></font>cgaggtgggca<br>gatcacccaaggtcgggagttcgagaccagcctgaccaacatggagaaacctcgtctctactaaaaatacaaaattagccaggcgtagtggtgcacgcct<br>gtaatcccagctactcgggaggctgaggcaggagaatcacttgagcctgggaggcggaggttgcgatgagccaaggtcgcaccattgcactccagcctgg<br>gcaacaagagcaaaactccgtctcagaaaaaaaaaaaaaaagtgtggtctaagtaaacaaaagacagagattgtcacaatggatttaaaaaacaagactg<br>aactaaatgctgtttataagaaactcactttaaataaaaagacacagatagaataaattaaaggggtggaggaaaag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	51572356	51572357	1002055	0	+	1104685303114	CTAAGGAGAGGCAGGGGAATA	TCCTCTTGTTATCCAGGCAGA	SINE	Alu	NCAI	actttacataagtcctttcaaaagaaatgaaataaatacaattatagtgatggccacatctaaggagaggcaggggaataggtgagggaaggaactagaa<br>aatagcttcagcgtggccaggcaccgtggctcacacctgtaatcccagcactttgggaggctgaggtgggcggatcacatgaggtcaggagtttcacacc<br>agcctgaccaacatggagaaacccagtctctactaaaaatacaaaac<font color="green"><u>AGTGGTGGTGCGTGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TCTCTTGAACCCAGCAGGCAGAGGTCACAGTGAGCCAAGATCAGGCCACTGCACTCCAGCCTGGAAGACAGAGTGAGACTCCGTCTCAAAAAAAAGAAAA<br></u></font><font color="red">ACTT</font><font color="green"><u>AGTGGTGGTGCGTGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCAGCAGGCAGAGGTCACAGTGAGCCAAGATCA<br>GGCCACTGCACTCCAGCCTGGAAGACAGAGTGAGACTCCGTCTCAAAAAAAAGAAAA</u></font>gaaaagaaaagaaaatagcttcaggcttaggcgtggtggctca<br>cacctgtaatcccagcactttgggaggccaaggagggcagatcacctgagatcgggagtttgagaccagcctgaccaacatggagaaaccccatctctat<br>taaaaatacaaaattagccgggtgtggtggaatgcggctgtaatcccagctactcaggaggctgaggcaggagaatagcttaaacccaggacgcagaggt<br>tgca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	790	642	NA	intergenic
0	chr12	110306023	110306024	1002056	0	-	1104685034642	AGTTCAGATGGGTGACATTGC	GGCAATTTGGTCACCTTGTTA	SINE	Alu	NCAI	caggaacatcccatgttgtaagagatggctgtttgaagaggcaggcatggaggggcagcttggatggcaacttccaggtatatgct<font color="green"><u>GTGGCTCCTGCCTG<br>TAATTCCAGTGCTTTGGGAGGCCAAGGCGGGAGGATCACTTGTGGCTAGGAGTTCAAGACCAGCCTGGGCAACAAAGTGAGTCCCCATCTCTACAAAAAA<br>TTAAAAACAAAAAATTAGCTGGTCGTAGTGACATGTGTCTGTAGTCTCAGCTACTCCAGAGACTGAGGCTGGAGGATCACTTGAGCCTCGGAGGTCAAAG<br>CTGCAGTGAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCATCCTGG<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCAGCCTGG</font><font color="green"><u>GTGGCTCCTGCCTGTAATTCC<br>AGTGCTTTGGGAGGCCAAGGCGGGAGGATCACTTGTGGCTAGGAGTTCAAGACCAGCCTGGGCAACAAAGTGAGTCCCCATCTCTACAAAAAATTAAAAA<br>CAAAAAATTAGCTGGTCGTAGTGACATGTGTCTGTAGTCTCAGCTACTCCAGAGACTGAGGCTGGAGGATCACTTGAGCCTCGGAGGTCAAAGCTGCAGT<br>GAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCATCCTGG</u></font>caggaag<br>ctgaggcaggagaatggcgtgaacccagaaggcggagcttgcagtgagctgagatcgtgtcagtgcactccagcctggg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1121	889	NA	intron:GLTP:NM:016433:1/5
0	chr12	133445242	133445243	1002057	0	-	1104685428247	NA	NA	SINE	Alu	NCAI	cttcccctcgaccccagcagcagtcactccgcatgtccccttcccctcagccccagcagcagtcactccgcatgtccccttcccctcggccccaccagca<br>atcactccccatgtccccttcccctcggccccaccagcagtcactccccatgtccccttcccctcggccccaccagcagtcactccccatgtccccttcc<br>cctcggccccaccagcagtcactccccatgtccccttcccctcggccccatcagcagtcactccccatgtcccctccccccagcccctggcagctgcgtg<br>tgctttcggcctctggatttttctgttctagacacttcacagacatggaatcatgcgtgctcttttttgttgttgttgagacggagtctcgctct<font color="green"><u>NNNNN<br></u></font><font color="red">TCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC<br>AGGTGCCTGCAACCACGCCCGGCTAATTTTTTTTTGTTTTTTGTTTGTTTGTTTGTTTTGAGATGGAGTCTCGCTCTGTCGCC</font><font color="green"><u>NNNNN</u></font>tggagtgcagtg<br>gtgcgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgcaaccacgc<br>ccagctaatttttttttgttttttgtttgtttgttttgagatggagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaa<br>gctccgcctcccacgccattctcctgggtccacgccattttcctgcctcagcctctgagtagctgggactacaggcacccgtcaccacgcctggctaatt<br>ttttgtatttttagtagagacggagtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgtccgatcgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CHFR:NM:001161347:4/16	
0	chr13	22427597	22427598	1002058	0	+	1104685715631	TTCAGTGGGATAGAAAATTGGA	GGCACAATGTAATCAGAAACTCC	SINE	Alu	NCAI	tggaaagtcagtggcctttcaaatgttaatcccttgtgattttgccacttactgaaaatccttttctactaatgaagaatacattaggaaaaagccgtga<br>tgtttagtcttcttgctgatatttggtaccaagctatgcagccctcacagaacctctaatgaaatatctgccatggctgatcgtgtgtatgtgtctcagt<br>gagcatacaacattgatcagggcctcgggtttctttggagtgaagttcagtgggatagaaaattggagtttct<font color="green"><u>GCTCATGCCTGTAATCCCAGCACTTTG<br>GGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGG<br></u></font><font color="red">GCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGTGAAAT<br>CCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCACGGTG</font><font color="green"><u>GCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAG<br>GAAATCGAGACCATCCTGGCTAACACGGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGG</u></font>aggctgaggcaggagaatggcatgatcccgg<br>gaggcggagtttgccgtgagccgagatggcgccactgcactccagcctgggcgaaagagcaagaccccgtctcaaaaaaaaaaataaataaataaataaa<br>aaataaaaaaataaagaaaactggagtttctgattacattgtgccagatatctattttatggattcaggtccactatttatagaaccaagtaaaaactgt<br>tttagaattcagaacttggaaaaatatgtagctaccttcaaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	599	330	NA	intergenic
0	chr13	113830856	113830857	1002059	0	+	1104685140641	GGGGAAATGTGCATAGTCTGA	AAGGTGGTATTCTTGCTGTGC	SINE	Alu	NCAI	ctgtgccgcgcggcccggagagagagaaagagggattcacactttgtagaatagcctctccttgaacaagcagctttcaaatgcagtaactttgcaaaga<br>tgagctcttatggtttgtgttcttctttagtaaattttttataaacggggaaatgtgcatactctgaaaaatggcagtgctggggactaaactgtgtccc<br>ccaaatttcttacattgaagtcctagccccagtgtgactgtatctggaggtaaggtcttcagggggtaactaaggctaaatgtggtcataagggtggggt<br>cctaacc<font color="green"><u>ACAGAACTGTGGCCTTATAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGTGGGGGAATTGC<br></u></font><font color="red">CCCCGACAGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCC<br>CGACAGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCTGAGGCGGGGGAATTGCCCCGAC<br>AGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAA<br>CTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAACTG<br>TGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAACTGTGGC<br>CTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCG</font><font color="green"><u>ACAGAACTGTGGCCTTA<br>TAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGTGGGGGAATTGC</u></font>ttagcccaggcgttccagaccagc<br>ctgtgcaatattagcaagaccctgtctctacaaaaaataaaaaaattagttgggtgtggtggcatgcacctgtgctcccagctacttgggaggctgagga<br>gggaagatcacttgagtctcggaggtcgaggctgcagtaagcactgactgcactgccgcactccagcctgggtgacagagtgaggtcctgtctcaaaaaa<br>ggagggagagagtcatctctatctgtaccatctctagcacagcaagaataccaccttattcttaagtgtgcaactcagaagag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1210	537	NA	intergenic
0	chr13	114011489	114011490	1002060	0	+	1104685140705	CATCCACTGAAAGCCAAAGAA	AACCGTAAACCAAGTGTGCTG	SINE	Alu	NCAI	caaggtgatccacaatgtatgatcatctggacacgagcagatgatcatgtgctatgtgattactgagaaaatcaggctctggaaggacaggcccttgtct<br>gtccactgggcctcccactcctgg<font color="green"><u>GTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCAAGAGATCGAGACCATC<br>CTGGCCAACATGGTGAAACCCTGTCTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTG<br>GGCAGATCACCTGAGGTCCAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTCAAAATACAAAAATTGGCTGGGCGTGATGGCTCA<br></u></font><font color="red">GTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGT<br>CTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTC</font><font color="green"><u>GTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCA<br>AGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTCATGCCTGTAATCCCAGCACT<br>TTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCCAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTCAAAATACAAAAATTGGC<br>TGGGCGTGATGGCTCA</u></font>aaaaaaagaatccctcttaagaaaccctctttctggtttagaaacatatttgaggatcatgtctcaggtaagaacatctcagca<br>cacttggtttacggtttattcacactgcttacgggaacat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	689	556	NA	intron:GRTP1:NM:024719:2/8
0	chr14	90254953	90254954	1002061	0	-	1104685286351	NA	NA	SINE	Alu	NCAI	atgccactgcactccagcctgggcaacaaaagcgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaacagatcttactttatggtggatcttct<br>atacctttccactatttaaatttataataaaagtttaaggtatcaattaaaaatatggaaaaaggagtacataacttttcggaataatgttatggaatac<br>ttagcaaaaaacccgtgtagagcaccacttgcggcactttttttttttttgtctgggacatggagttttgcttctcctgcccaggctggagcgcagtggc<br>gcgatctcggctcaccgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcatgctccaccg<font color="green"><u>NNNNN<br></u></font><font color="red">AGCTAATTCTGTATTTTTAGCAGAGATGGGGTTTCATCATGTTGCTCAGGCTGGTCCTGAACTCCCGAGCTCAGGCAATCCGCCCTCCTTGGCCTCCCAA<br>AGTGCTGGGATTACAGGCGTGCTCCACCACGCCCA</font><font color="green"><u>NNNNN</u></font>ttctgtatttttagcggagatggggtttcatcatgttgcccaggctggtcctgaactccc<br>gagctcaggcgatccgccctccttggcctcccaaagtgctgggattacaggcgtgctccaccgcgcccggctaattctgtatttttagcagagatggggt<br>ttcatcatgttgcccaggctggtcctgaactcctgagctcaggcgatccgccctcctcggcctcccaaagtgctgggattacaggcgtgcgccaccgcgc<br>ccagctaattctgtatttttagcagagatggggtttcatcatgttgcccaggctggtcctgaactcctgagctcaggcgatccgccctcctcggcctccc<br>aaagtgctgggattacaggcgtgcgccaccgcgcc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	58099644	58099645	1002062	0	-	1104685219345	NA	NA	SINE	Alu	NCAI	gaacccacaaacatgttgtaatttttttttttttttggagactgagtctcgctttatcacccaggctggagtgcaatggtatgatctcggttcactggaa<br>actccgcctccctggctcaagcgattctcctgccaagtagctggaattataggcacacattaccatgcctggctaatttttgtatttttagtagagacag<br>ggtttcaccatgttggccaagctggtctcgagtccctgaccccaagtgatctgtccacctcggcctcccaaagtgcggggattataggcgtgagccacca<br>ctgtgcccagcctgtaagtttttttagtcagctaaaaaaaaaaaatccagccgggcacagtggcacatgcc<font color="green"><u>TGTAATCCCAGCACTTTGGGAGGCCGAGG<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNNTCAGATTTCAAGATGAGACTAGGCAGGGCCAAATAAACCATACCCAACCCACAGCACAGTCCTGGAAACAAATATGGATT<br>TCGGTACTAGGCGTGGGTTGCTGCTGTAACAAATACCTAAAATGAGGAAATAGCTTTGGAATTGGATAATGGGTAGAGGCTGGAAGAATTTGGAGGTACA<br>TAATAGAAAAAAGCCTACATTGCCTTGAGTAGACTGTTGGTAAAAAACAAAAATATATATATATATAGATAGATAGATAGATAGATGATAGATAGATAGA<br>TAGATAGATATAGATATTAAAGATGCTGATGTTGGCTGGGTGCGGCGGCTCATGCCTATAATCTCAGCACTGTGGGAGCCTGAGGCGGGCGGATCACTTG<br>AGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGGGGCGCATGTAATCCCA<br>GCTACTGGAGAGGCTGAGGCAGAGGCTGATATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTTTGTCTCCAAAATAAAATAAAATAAAATA<br>AAAATAAATAAATAAATAAAGATGCTGGGCGGGCGCAGTGGCTCACACTT</font><font color="green"><u>TGTAATCCCAGCACTTTGGGAGGCCGAGG</u></font>gggcggaccacaaggtcagga<br>gttcaagaccagcctgaccaacacagtgaaaccccgtctctactaaaaataaaaaaattagctgggcatggtggcgcacgcctgtagtcccagttactca<br>ggaggctgaggcaggagaatcgcttgaacccagaaggcggaggttgcagtgagtgaaccaagattgcgccactgcactccagcttggtgatagaatgaga<br>ctctgtctcaaaaaaaacaaaacaaaacaagaaagaatccaatccaacctgtaatttttttttttttttttttttttgagacagagtgtcttgttctgtc<br>acccaggctggagtgcagtggcacgatcttggctcactacaaccttcacc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	16262153	16262154	1002063	0	+	1104685488440	NA	NA	SINE	Alu	NCAI	aggattttgaaagggctatttgccacccaaatgaggatttgggttaattccagggctcggctgactctgagaatccctaatttcctcttggttaagtaac<br>cattcgccttgagtattccactgtacatgcagttgtggtgagtaggtgtacaggttcttaggactagaagagtcctcaagttcaggcctggcgcccccta<br>ttttacaggggaggtcacaggctcacagcattttggtgatgtggccaatgtcacccagtgaatgaggacgaatcaacatgaaaacgaggcaactgtcctt<br>taaagatgaa<font color="green"><u>CCAGGCCGGGCGTGGTGGCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGACCAG<br></u></font><font color="red">GGCCGGGCCTGGTGGCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGA</font><font color="green"><u>CCAGGCCGGGCGTGGTG<br>GCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGACCAG</u></font>cctgggcaacacggcgaaaccgtctct<br>atcaaaaacaaaaattagccagcatggtggcatgtgcatgtagtcccagctactcgggaggctgaggtgggaggattgcttgagcccaggaggcagaggt<br>tgcagtgagccgagttcgtgccactgcattccagcctgggtgacaaagccagacccagtctatatatatgtgtgtgtgtgtataaataagaagccaaact<br>cacatgtgcactcctgttactcccttcagccaggccacgtattaaaaggagaagaaccaggggttggggacagggtgggcgag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ABCC6:NM:001171:22/31	
0	chr16	89684315	89684316	1002064	0	-	1104685077899	NA	NA	SINE	Alu	NCAI	gtattacacaatatgaagatgaatggtaaatacatgctaataatttaaaattttaatttttcttgacttagaatgatgattttttatttttattttttta<br>tattttttgagactgagtctcgctctgtcgcccaggatggagtgcaggggcacaatctcagctcactgcaacctccgtctcccaggttcaagtgattctt<br>gtgcctcagcctcccgagtagctgggattacaggtgcgtgccaccacacacagctaatttttgtatttttagtagagatggggtttcaccatgttggcca<br>ggctagtctcaaactcctgacctcaaatgatctgcccgtcttggcctcccacagcgctgggattacaggtgtgagccactgcgcccggcctccca<font color="green"><u>NNNNN<br></u></font><font color="red">CTGGGATTACAGGTGTGAGCCGCCGCACCCGACCTCCCAAAGTGCTGGGATTACAGCCCTGAGCCAGCACGCCCAGCCTCCCACAGCGCTGGGATTACAG<br>GTGTGAGCTGCCGCGCCCAGCCTCCCACAGTGC</font><font color="green"><u>NNNNN</u></font>ttacaggtgtgagccaccgcgcccggcctcccaaagtgctggggttacaggtgtgagccacc<br>gcgcccggcctcccacagcgctgggattacaggtgtgagccgccgtgcccgacctcccaaagcgctgggattacaggtgtgagccgccgcacccgacctc<br>ccaaagtgctgggattacaggtgtgagccgccgcgcccggcctcccaaagtgctgggattacaggtgtgagccgccgcgcccggcctcccaaagtgctgg<br>gattacaggtgtgagccgccgcgcccggcctcccaaagtgctgggattacaggtgtgagccgccgcgcccggccgccttccagcatttctggcacagacc<br>ggcacaggtgtgggctcctgtcctttgcatgtt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr17	7449761	7449762	1002065	0	-	1104685549247	CTCCATCCCATAATCCATGTG	CACCTGAGGTCAGGAGTTCG	SINE	Alu	NCAI	atctctacaaaaaatacaagaaaaattatccaggtgcgatggcatgctcctgtagtcccagctactgtggaggctaagtcaggaggatcacttgatccca<br>ggagtttgaggttgcagtgagctatgatcaccccattgaaccgaagcctcggcagcagagtgagaccctgtctctataaaaaataaaataaataggccgg<br>gcacagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgtagtg<br>aaacaccatctctactaaaaaatacaaaaattagctgggcatggtggtgcacacctgaagttccagctacttgg<font color="green"><u>AAATAAAATAAATAGGCCGGGCACAG<br>TGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGTAGTGAAACAC<br>CATCTCTACTAAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGGGAAGCTGAGGCAGGAGAACTGCTTGAAATAAA<br>ATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGATCAAGAGTTTGAGACCAGCCTGGCC<br>AACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAATCCCAGCTACTCGAGAGGCTGAGGCAGGAGAA<br></u></font><font color="red">AATAAAATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGATCAAGAGTTTGAGACCAGC<br>CTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGGGAAGCTGAGGCA<br>GGAGAA</font><font color="green"><u>AAATAAAATAAATAGGCCGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTC<br>GAGACCAGCCTGGCCAACATGTAGTGAAACACCATCTCTACTAAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGG<br>GAAGCTGAGGCAGGAGAACTGCTTGAAATAAAATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAT<br>CACGAGATCAAGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAA<br>TCCCAGCTACTCGAGAGGCTGAGGCAGGAGAA</u></font>ggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacgagatcaag<br>agtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcgcacgcctgtaatcccagctactc<br>gagaggctgaggcaggagaatcacttgaacctgggaggcagaggtcgcagtgaggcgagattgtgccactgcactccagcctgggcgacagagtgagagt<br>tcatctctcagaaaaataaaaataaaaaataaaataaaataaatgaaacacaagctataacacaacataattgtatttaattgatacagtatcaatttag<br>ggcctt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	803	589	NA	intergenic
0	chr17	70698142	70698143	1002066	0	-	1104685275526	GTTGAGGGACCATCTCCTTGT	GTGATCTGTCCACCCTGAGAA	SINE	Alu	NCAI	aggtgctgcctaaagaaaaaaacagtagcctcctatctttggactcagtagaacacaggaagatagggttagcttgcgagtttatgagagcatgtggatt<br>ggtatatccaaggttagtgatctgtccaccctgagaaatgtctatgttcttttttattttattttatggagacagagtctcactccattacctaggctgg<br>agtgcagtggtgtgatcacagctcactgcagcctccatctcccaggctca<font color="green"><u>GCTGAGGTGGAAGGACTGTTTGAGCCCAGAAGTTAAGTTTGAGACCAGCC<br>TGGGTGATATAAAGAGACCCCATCTCTATAGAATGTTTAAAAATTAGCCAGCTGTGGTGGTGCCTGCCTGTAGTCCTGGCTACTCAGGAGGCTGAGGTGG<br></u></font><font color="red">CCACCTCAG</font><font color="green"><u>GCTGAGGTGGAAGGACTGTTTGAGCCCAGAAGTTAAGTTTGAGACCAGCCTGGGTGATATAAAGAGACCCCATCTCTATAGAATGTTTAAA<br>AATTAGCCAGCTGTGGTGGTGCCTGCCTGTAGTCCTGGCTACTCAGGAGGCTGAGGTGG</u></font>tgctgagattacaggcgtgagccaccacactctgcgtgtct<br>atgttctttttttttttcttttccttccttccttccttttctttctctttctttctttctctttttctttttttttttttttttgagacagaatctccct<br>ctgtctcccaggctggagtacagtggtacaacctcggctccctgcaacctccgcctcccaggttcaagcaattcttgtgcttcagcctccccagtagctg<br>ggactacag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	957	817	NA	intron:SLC39A11:NM:139177:7/10
0	chr19	4561918	4561919	1002067	0	-	1104685559535	NA	NA	SINE	Alu	NCAI	cgcaaggacaaacactgtgtgacccactcctaggaagtccctagagtcatcaggttcactgagacagtaggatgggaggtgccaggggctggggaggggg<br>gtgaggagtgagtgtttcatggggacagaatttcagtttgggaag<font color="green"><u>CCCGGCTAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATATTGGCCAGGC<br>TGGTTTTGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCGGCCAATTTTTGTATTT<br>TTAGTAGGGATAAGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCTTATCCCTACTAA<br>AAATACAAAAATTGGCCGG</font><font color="green"><u>CCCGGCTAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATATTGGCCAGGCTGGTTTTGAACTCCTGACCTCAGGTG<br>ATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCGGCCAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATAT<br>TGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG</u></font>gacagagcaggactcttgtctccaaa<br>aaaaaaaaaaaaaaaaaaaaagagcactcaccccttgggggtgctgtgaagattaaatgagttaatttaagtacttatgataatgcctggcacctagcaa<br>gtgctttatgtttgctagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr19	17833248	17833249	1002068	0	+	1104685513355	CTTGTGGCTTCCTGACACTTC	CAAGCAATTCTCCAACCTCAG	SINE	Alu	NCAI	cttcatggggcagaaagtggagctggaaatcctgtctgctgtgtgtgaacttcgtggccacttcccttctttatgccttgatttccccacctgaatgggg<br>caatatccctgtgtggcaaaaagcatgctaaggctgggtggggtggctctcgcctgtaatcccaacactttgggaggtcaaagtgggaggattttttgag<br>gtcaggagttcaaaaccagctgg<font color="green"><u>GAAACCCTGTCCCTACTGAAAATGCAAAAATGAGCTGGACCTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAG<br>CCCGAGGAGGGAGGATCGCTTTTACCCAGGAGGCAGAGGCTGCAGTGAGCTAAGATTGTGCCACTGCACTTCAGCCTGGGCAACAGAGCGAGACCCTGTC<br></u></font><font color="red">GAAACCCTGT</font><font color="green"><u>GAAACCCTGTCCCTACTGAAAATGCAAAAATGAGCTGGACCTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAGCCCGAGGAGGGAG<br>GATCGCTTTTACCCAGGAGGCAGAGGCTGCAGTGAGCTAAGATTGTGCCACTGCACTTCAGCCTGGGCAACAGAGCGAGACCCTGTC</u></font>aaacttaggcctg<br>acatggtggctcacacctataatcccagcactttggaaggctgaggtgggtggatcacctgaggtcaggagttcgagaccagcctgaccagtatggtgac<br>accccatctctactaaaaatacaaaaattagctggttgtggtggcaagcgcctataaccccagctacttgggagactgaggttggagaattgcttgaact<br>caggaggcag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	812	646	NA	intron:MAP1S:NM:018174:2/7
0	chr19	9177588	9177589	1002069	0	-	1104685282581	GCAAGCGGTAGTCTCTGCTATT	TGATAGGTGCTGGAGATAAGCA	SINE	Alu	NCAI	tgacctcatgatccacctgacccagcctcccaaagtgctgggattacaagtgtgagccaccatgcccagcccacttattctttaattcacatatttattc<br>atttagcaagcatattctaagttgataggtgctggagataagcaataagacttagatgaccaagtgcagtggctcatgcctataatcccagcacattggg<br>aagtagagtcgggaggattgcttgagctcaggagttcgagaccagactgggcaacatggtgaaaccctgtctctactaaaaatacaaaaattagccagat<br>gtggtggtgcacacctgttaacccagctactcgggagactgaggtgggaggatcacttgagcctgggaggtggaggttgcagtgagctatcgcac<font color="green"><u>NNNNN<br></u></font><font color="red">CACTCCAGCCTGTGTGACAGAGCAAGACCTTGTCTCTCAAAAAAAAAAAAAATAGGCCGGGCCTGGTGGCTTAGGCCTGTAATGCCAGCACTTTGAAAGG<br>CCGAGGCGGGCAGATCACCTGAGGCCAGGAGTTCGAGATTAGCCTAGCTAACATGGTGAAACCCTGTCTCTATTAAAAGTACAAAAATCTACTAAAATTA<br>CAAAAATGGTGGCACTGCCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCACTTGAACTCGGGAGGCGGAGGTTGCAGTGAATCAAGATCAC<br>GCCACCGT</font><font color="green"><u>NNNNN</u></font>agcctggcgacagagcaagactccatctaaaaaaaaaaaaaattacccaggtgtagtggcgtgcacctgtaatcccagctacttggg<br>aggctgaggcagaagaatcgcttgaatcctcctgagtagctgggattacaggtgcccaccaccacacccagctgatttttgtatttttagtagagatggg<br>gtttctccatgttggtcaggttggtctcgaactcccgacctcaggtgatccaccctcctcggcctcccaaagtgctgggattacaggcatgagccactgc<br>gcccagcctgaaaactgttgctgaatgcagtcacatcggaagtaaaggcttcaacttgtgaatttgagggggatacaattcagagcgtcacagagagaga<br>acatgagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1015	708	NA	intergenic
0	chr2	131886968	131887319	1002070	0	-	1104685027690	GGGTAAAGGAGTGAGGGAGTG	AATTCATAGGCAAAAAGCAGTC	SINE	Alu	NCAI	gcttgcgcctgggaggtcgaggctgtagtgagccaagatcacaccactgcactctagcctggatgagagagaggggctctatctcaagaaaaaaaaaaga<br>agaaaagaatgctattaacatccctattacccttacactcttatgtaaacatctccacagggcaaattccaaagactgaaaataccacatcaaaggataa<br>aaacataatttatttcagcaggtattgccaaaatgccctgcaaaacgattctaacaatctctatacctaccaactttacactatattgtcaaaaaaaact<br>agatatctgaaccttaagtatcacaagagctttcttaattcataggcaaaaagcagtctctcacgcctgtaatcccagcacttcgggaggtcaag<font color="green"><u>NNNNN<br></u></font><font color="red">TGATCACCTGAGGAATGCAACTTAACTGCATTCCTTAGAAAGCTAGAACACTTGGGCTGGGTGTGGTGGCTCAAGCTTGTAATCCCAGCACTTTGGGAGG<br>TCAAGGCGGATG</font><font color="green"><u>NNNNN</u></font>cctgaggtcaggagttcgagaccagcctggccaacatggtaaaaccaagcttctactaaaaacacaaaattagctgggcgtgg<br>tggcacatgcctgtaatttcagctactccagaggctgaggcaggagaagtgcttgaacccgggaggcagaggttgcatgagcggagattataccattgca<br>ctctagcctgggcaacaagagcgaaactccatctcaaaaaacaaaatagtgttctcttgtgcactccctcactcctttaccccttactttcttactgacc<br>ctatccctcttatcttcatcaattcctttnnnnnnnnnnnnnnnnnnnnnnnccacacccagcccaagtgttctagctttctaaggaatgcagttaagtt<br>gcaaaattcccc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	446	335	NA	intron:PLEKHB2:NM:017958:4/8
0	chr2	86924448	86924449	1002071	0	+	1104685782245	NA	NA	SINE	Alu	NCAI	tgagtagctgggactacaagcgcatgccaccacgcccagctaatttttgtatttttagtagagacagggtttcactgggttggccaggatggtcttgatc<br>tcttgacctcgtgatccacccgccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcctttttttttttttttcaagtacagat<br>gaggtcttgctacgttgcccaggctggtcttgaactcctgggctgaagtgatcctttcacctcggcctcccaaagtgctgggtttacaggtatgagccac<br>cacacccagcttaattatttcttaaattgtgc<font color="green"><u>TATTGGCTGGGTGCGATGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCAC<br></u></font><font color="red">CGAGGTCAAGAGATTAAGACCTTCCCGGGCAACCCGGTGAAACCCTGTCTCTACTAAAAATACAAA</font><font color="green"><u>TATTGGCTGGGTGCGATGGCTCGCGCCTGTAATC<br>CCAGCACTTTGGGAGGCCGAGGCAGGTGGATCAC</u></font>ctgaggtcaggagttggagaccagcctggccaacgactctggagactaaggcaggagaactgcttg<br>aacccaggaggcagaggttacagtgagccgagatcgcaccattgtactccagcctgggcaacaagagcgaaactccgtctaaaaaaaaaaattgtgcata<br>ttgctggccttttctttaccttcttatatagctctgtgtcttgtcagttggagcttagatgcacagagccacatcttttttggaagagactttggatact<br>atgatctcccaacctcttcaacttatagacaaggaaacaaaggcacagagaatgtcttacctaagg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	42325254	42325255	1002072	0	-	1104685521487	NA	NA	SINE	Alu	NCAI	ctaaaaatacaaaaattagctgggcatggtgctgcatgcctgtaatcccagctactcgggaggctgag<font color="green"><u>GTGGCTCACGCCTGTAATCCCAGCACTTTGGG<br>AGACTGAGGCGGGGAGATCACGAGGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCAT<br>GGTGCTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGGTCACACCACT<br>GCACTCCAGCCTGGCAACAGAGTGAGACCCCATCTAAAAACAAAAAAATCAACCACACAGTTCAGCAAATGTACAAAGAAACTGAACAATGATGATCATT<br>ATAGCATTGATGGAAATAGTAACAGATGTTTGACAATATAATGGTTAAATAAGATACGGCAAATTCAGGAATGTTGGAGATCTGAATACACATAACAACA<br>TGGAACGATATGTTAAATAGAAAAAGAAAGTTGTAAAAGAGTAAGACATCGTCTAATTTTAAGCCTGGTGTGGTGGCTCACGCCTGTAATCCCAGTATTT<br>TGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCAATTAGCCAGGCATGGTGGCACATGCTT<br>GTAATCCCAGCTACTCGGCAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCAAGATCATACCACTGCACTCCAGCCTGG<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGGAGATCACGAGGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATC<br>TCTACTAAAAATACAAAAATTAGCTGGGCATGGTGCTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGC<br>GGAGGTTGCAGTGAGCCAAGGTCACACCACTGCACTCCAGCCTGG</font><font color="green"><u>GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGGAGATCACGA<br>GGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGCTGCATGCCTGTAATCCCA<br>GCTACTCAGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGGTCACACCACTGCACTCCAGCCTGGCAACAGAGT<br>GAGACCCCATCTAAAAACAAAAAAATCAACCACACAGTTCAGCAAATGTACAAAGAAACTGAACAATGATGATCATTATAGCATTGATGGAAATAGTAAC<br>AGATGTTTGACAATATAATGGTTAAATAAGATACGGCAAATTCAGGAATGTTGGAGATCTGAATACACATAACAACATGGAACGATATGTTAAATAGAAA<br>AAGAAAGTTGTAAAAGAGTAAGACATCGTCTAATTTTAAGCCTGGTGTGGTGGCTCACGCCTGTAATCCCAGTATTTTGGGAGGCCAAGGTGGGCAGATC<br>ACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCAATTAGCCAGGCATGGTGGCACATGCTTGTAATCCCAGCTACTCGGCAGGC<br>TGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCAAGATCATACCACTGCACTCCAGCCTGG</u></font>ccagcctgaccaacatggagaaa<br>ccccaattagccaggcatggtggcacatgcttgtaatcccagcta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MYBL2:NM:002466:6/14	
0	chr20	48579873	48579874	1002073	0	-	1104685523492	NA	NA	SINE	Alu	NCAI	taagataacaaccagaatcatgactgacacagtcacacaagaaacatcagacttttataaattgaatataatctttagaatattcacattaattggccgg<br>gcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcaggagttcgagaccagcctggccaacatagggaaac<br>cctgtctc<font color="green"><u>GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGC<br>CAACATAGGGAAACCCTGTCTCTACTAAAAAATACAAAAAATAAGCCAGGCTGGTCGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAA<br>AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAATTAAAAAA<br>AAAAAAAATTCACGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGTAGCATGAGGTCAGGAGATCGAGACCATC<br>CTGGCTAACACGGTGAAACCCTGTCTCTACTAAACAAAATACAAAAAATTAGCTTGGCGTGGTGGCGGGCGCCTGTAGTCCTAGCTACTCTGGAGGCTGA<br>GGCAGGAGAATGGTGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGG<br>GAAACCCTGTCTCTACTAAAAAATACAAAAAATAAGCCAGGCTGGTGGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAAAATCGCTTG<br>AACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAA</font><font color="green"><u>GGCCGGGCGCGGTGGCT<br>CACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGGGAAACCCTGTCTCTAC<br>TAAAAAATACAAAAAATAAGCCAGGCTGGTCGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAAAATCGCTTGAACCCGGGAGGCGGAG<br>GTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAATTAAAAAAAAAAAAAATTCACGGCCGGGCGCGG<br>TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGTAGCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTC<br>TCTACTAAACAAAATACAAAAAATTAGCTTGGCGTGGTGGCGGGCGCCTGTAGTCCTAGCTACTCTGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGG<br>AGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAA</u></font>ctactctggaggctgaggcaggaga<br>atggtgtgaacctgggaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaaaaca<br>aactcacattaataaaatatccagataaatttaactttagaagagattaacataaccaaaattatgacagataatattaggta	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	54025300	54025301	1002074	0	-	1104685207907	TGGCTGCTTAGGACTTACCAT	GAGTCATCAGGTCAACAATCTAAAA	SINE	Alu	NCAI	gttaaacagtggaggccagcctggccaacatggcaaaacacaatcccaaattact<font color="green"><u>GCTCACGGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCTTGCC<br>TCAGCCTCCCACATAGCTGGGGTTACAGGCGCCTACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGAGGGGGTTTCACCACGTTGAAGGCTGGT<br>CTAGAACTTCTGACCTCAGGTGATCCACCCACCTCAGCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTCTTATATTTTTTGAGACAG<br>CATCCCACTCTGTCATCCAGGCTGTGGTGTAGTGGCCCAGTCTCAGCTCACTGCAACCTCCACCTCCCAGGTTGAGGCAATTCTCATGCCTCAGCCTCCC<br></u></font><font color="red">GGGAGGCTGAGGCATGAGAATTGCCTCAACCTGGGAGGTGGAGGTTGCAGTGAG</font><font color="green"><u>GCTCACGGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCTTGCCT<br>CAGCCTCCCACATAGCTGGGGTTACAGGCGCCTACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGAGGGGGTTTCACCACGTTGAAGGCTGGTC<br>TAGAACTTCTGACCTCAGGTGATCCACCCACCTCAGCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTCTTATATTTTTTGAGACAGC<br>ATCCCACTCTGTCATCCAGGCTGTGGTGTAGTGGCCCAGTCTCAGCTCACTGCAACCTCCACCTCCCAGGTTGAGGCAATTCTCATGCCTCAGCCTCCC</u></font>a<br>aaaaataaataaataaaaataaaaaatgaaataaaatgaaaagtcaaacaattg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	937	647	NA	intergenic
0	chr3	155385877	155385878	1002075	0	+	1104685603442	CCCACCACTTTTTAAATGCAG	ATTTGCTGGGTGATGTGACTC	SINE	Alu	NCAI	ttgtgttaatattcttaataatcacatgccaacttccccaccactttttaaatgcagtaaccaaaactgaaccctttcatcaaaagagtcatgttggccg<br>agcgcgatggcacatgcctgtaatcccagcactttgggaggctgaggggggtggatcacctgaagtcaagagttgaagaccagcctggccaacatg<font color="green"><u>TTTT<br>TTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAAACTTGGCTCATTGCAAGCTCTGCCTCCTGGGTTC<br>AAGCAATTATCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACAGGCACACGCCACCACTCCTGGCTAATTTTTGTATTTTTTTTTTTTTTTTTTTTTTTT<br></u></font><font color="red">AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAAACTTGGCTC<br>ATTGCAAGCTCTGCCTCCTGGGTTCAAGCAATTATCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACAGGCACACGCCACCACTCCTGGCTAATTTTTGT<br>ATTTTTTTTTTTTTTTTTTTTTTTT</u></font>caaagagaatgctagtcaggaactgctaacactatttgcagtaacaatcaacaagttgagaactttcatctgttt<br>gttgctctctgtgaacctcatcggggcttctgccaagcctgccaatatttgcttcactttgctttgtttctgttcttaataacacttacccgagcttaga<br>acaagaaaaagcactggactt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	587	404	NA	intron:PLCH1:NM:001130961:1/24
0	chr4	25810565	25810566	1002076	0	+	1104685316592	NA	NA	SINE	Alu	NCAI	tagacatcaataggaaagtcgtttttagtttcaagcttctgaaaggtgtaatgcatccaaggtagaagtttgaaaggggaaaaaaaggaaaggagaaaat<br>gtcacttaactattaaaaggaatgatctacaccaagttgactggtttgtaaaaacacagggcattcctcatttgcactctgacctggagatcctcattgg<br>gctcacagcctgctttctttttctttttcaaaaaaagcctatttgggc<font color="green"><u>CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCA<br>GGAAATCGAGAACACCCTGGCTAACACGGTGAAACCCCTATCTCTACTAAAAATACAAAAAAAAATTAGCAGGGTGTGGTGGCGAGTGCCTGTAGTCCCA<br></u></font><font color="red">CGCCTGTAATCCC</font><font color="green"><u>CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAAATCGAGAACACCCTGGCTAACACGGTGAAAC<br>CCCTATCTCTACTAAAAATACAAAAAAAAATTAGCAGGGTGTGGTGGCGAGTGCCTGTAGTCCCA</u></font>gtgaggcaggagaatggcgtgaacccgggaggcag<br>agcttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaagcctatttgtatctttct<br>atgtactgggtaaattttcttttctttcttcttttttattttattttattttattgagacagaatcttgctctgtcgcccagactgcagtgcagtggcat<br>gatcttggctcat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SEL1L3:NM:015187:9/24	
0	chr4	14835696	14835697	1002077	0	+	1104685313903	TTCGCTATTTTTCTATTCACTTGC	AACGTGGGCCTACAGCATAG	SINE	Alu	NCAI	atatgtgtttcttcagactaaaacatcacagcagtgttgggttaaactattcttttaaatttgattttaaaattatatgtgcttttaatagaaaaattag<br>aaagcacagaaaatcaaaaataaggaaaaatcataacctacaattccagttccttgtggcaaccacagtttaactttggggcatttcctttctgacattt<br>tgtttcaatgcaaatttcgctatttttctattcacttgctttaagtagttaagact<font color="green"><u>GGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC<br>AAGGCAGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGACAATATGGTGAAACACGGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGG<br></u></font><font color="red">GGGCGTGGTG</font><font color="green"><u>GGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGACA<br>ATATGGTGAAACACGGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGG</u></font>tagtcccagctacttgggaggctgaggcaggagaatcacttgaacc<br>tgggaggcggaggttgcagtgagccaagatcgtgccactgacagagtgagacttcatctcaaaaaaaaagtaaacaaaagactatgctgtaggcccacat<br>tcatatttgacttgctcacctaatgatgtgctataagtattaatgctttgagttgctattatttatcatccccacatgtctgacagcttttcccagaaag<br>gtaattcaac	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	495	363	NA	intergenic
0	chr4	161593975	161593976	1002078	0	+	1104685734425	NA	NA	SINE	Alu	NCAI	tagcaatattttgtgtatcttgattgccacaatatgccttgtacaacgaatgctttctttatcactggaaatagagttattagtacctttaaatctagtc<br>acattctagagccaatttttatttatttatttatttgagatggagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaat<br>aaccgcctcccgggttca<font color="green"><u>GCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCTCATGCCAGAAGAGCTGGCTAATTTTTGTATTTTTAGT<br>AGAGATGAGGTTTCACCATATTGGTCAGGCTGATCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAACCTCCCAGCGTGCTAGGATTACAGGTGTG<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>GCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCTCATGCCAGAAGAGCTGGCTAATTTTTGTATTTTTA<br>GTAGAGATGAGGTTTCACCATATTGGTCAGGCTGATCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAACCTCCCAGCGTGCTAGGATTACAGGTG<br>TG</u></font>agccaccacacccagccgggtatagagccaatttttaaacaactacaatgaattcagaacatataacctcaagattctgttcctgtagaaccacatcc<br>agtacttaaatttgggttagagttcaaccagagaagaagaagcagtaggagatgtatttaaacagatttattgcagtaacttggtgtgtgtgattgtggg<br>gctgttcaaaattcgtagag	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intergenic	
0	chr4	128872834	128872835	1002079	0	+	1104685449200	NA	NA	SINE	Alu	NCAI	gagtgtagtgacccgatctcggctcactgcaacctccgactcctggattcaagcgattctcctgcctcagcctcccgagcagctgggattacaggctcct<br>gccaccacaacaggctaattttgtacttttagtagagatgaggtttctccatgttggccaggc<font color="green"><u>GGTCTCGAACTCCTGACCTCAGGTGATCTGCCTGCCT<br>TGCCTCCCAAAGTGTTGGGATTACAGGCATTAGCCACTGCGCCCAGCCATTACTGTCAATTTTAGAACACATTTGTCACCTCAAAAAAAACTCTATACCC<br>TTCAGCTATCACCCTGTTTCATCCCCTCTCCTGCCAGCTGTAAACAACCACTAATGTACTTTGTTTGTACTCTATAGAGTTTTATCTGTATTTTCATACA<br></u></font><font color="red">ATCTAGCCTCCCGTAATAGCTGGGACTACTGTCTTGTCGCCACCACTATATTTTTTTTTTTTTTTAGACAGGTTCGCTTGTACCAGGTCGGATTTGTTTA<br>TTTGTCA</font><font color="green"><u>GGTCTCGAACTCCTGACCTCAGGTGATCTGCCTGCCTTGCCTCCCAAAGTGTTGGGATTACAGGCATTAGCCACTGCGCCCAGCCATTACTGT<br>CAATTTTAGAACACATTTGTCACCTCAAAAAAAACTCTATACCCTTCAGCTATCACCCTGTTTCATCCCCTCTCCTGCCAGCTGTAAACAACCACTAATG<br>TACTTTGTTTGTACTCTATAGAGTTTTATCTGTATTTTCATACA</u></font>atagaataatataatacatggtcttttgtcttgtcttctttcacttagtatttttt<br>tttttttttttgagacagagtctcgctatgtcaccaggctggagtgcagtggcgcaatctcggctcattgcaatctccgcctcccgggttcaagcaattc<br>tcacacc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MFSD8:NM:152778:3/13	
0	chr5	177606116	177606117	1002080	0	+	1104685059034	NA	NA	SINE	Alu	NCAI	ttccttgtgcccaggagttcgaatccagcctgggcaacatatggagaccctgtctccaaaacaaaacacagaaagaaaaagaaaaaagacgatggctcac<br>gcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact<br>aaaaatacaaa<font color="green"><u>TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATG<br>GTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTT<br>GAACCCCGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTA<br>ACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCAGGTGTGGTGGCAGATGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCTGGGAAGCAGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCATTCCAGCCTGGGCAACAGAGAGAGACTCTGTCTCAAAAAAAAAAAA<br></u></font><font color="red">TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTAACATGGTGAAACCCTGTC<br>TCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCCGGAGGC<br>GGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAA</font><font color="green"><u>TGGCTCACGCCTGTAATCCCA<br>GCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAA<br>TTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCCGGAGGCGGAGGTTGCAGTGAGCCAA<br>GATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGGGAGCGGTGGCTCACGCCTGT<br>AATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATAC<br>AAAAAAATTAGCCAGGTGTGGTGGCAGATGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAAGCAGAGCTTGCAGT<br>GAGCCGAGATCGTGCCACTGCATTCCAGCCTGGGCAACAGAGAGAGACTCTGTCTCAAAAAAAAAAAA</u></font>gaggctgaggcaggagaatggcgtgaacctgg<br>gaagcggagcttgcagtgagccgagatcgtgccactgcattccagcctgggcaacagagagagactctgtctcaaaaaaaaaaaagttgaaatttatcaa<br>ctgccttgttagtaggtattgataagactggtatcttttctcattttatctatttatgtaatgaattatattgagtttc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	122161776	122161777	1002081	0	-	1104685230111	GCCCAAGTAAATGAATGACCA	GCGTGCACTTTTCCACTGTAT	SINE	Alu	NCAI	gttcacttgtctggattacctacagtggacaatctacatctcttccactaatttccctttagaatccatattccatgcatataagtgacttgtaaaaatg<br>taaatctgtcatcttactctttgattaaaaatattatatggtttctcattacttttagaataaaacctagactccctaccacagcctggaaatacttcca<br>tggcctatgcctccatctccatcattctgggcacattggctctccctctgttctgaaaacacagcaattcattgtggccaacagacctttgcat<font color="green"><u>AGGGAA<br>GAACTCCCTGAGAAGGTAACATTGGAGCTTAGACTTGAATTTGAGAAGGAGCCACACTGACTTATATTTGGAGGAAGAGCTTTTCAGATAGATGGAGTAG<br></u></font><font color="red">C</font><font color="green"><u>AGGGAAGAACTCCCTGAGAAGGTAACATTGGAGCTTAGACTTGAATTTGAGAAGGAGCCACACTGACTTATATTTGGAGGAAGAGCTTTTCAGATAGAT<br>GGAGTAG</u></font>gctctaaagttcctgctttgacccgttattatacatgattttattcacctgaagttttgtcacaaatcattactatcagaaaatggtcattca<br>tttacttgggcccagaaccaggctttaatctatactacaatttattaaaggcaaagaaaatgaagtatttttttcttagtctattaactaacgtggtctt<br>actcatgagcctgtccccaaccacaccagctagtagcaaggaaaagtgaaaaagaaattctatgtagtatatttcactttaaaacttaattcaatccaag<br>g	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1164	1060	NA	intergenic
0	chr8	73095139	73095159	1002082	0	+	1104685425118	TCAAGTTTTTCCCCAACTCAG	TGTATTTCAAGTGTCCATTTCTCAA	SINE	Alu	NCAI	cagtgtgtgtcaacctatatttgcattgttttccaaaatgagtaaattttgttttattaagtttgttttaataaggaatatatgtacctctcacttttga<br>gttctttaaatcaagtttttccccaactcagagatttctagatattctctctctctctctctctctctctctctctctatatatatatatatatatatat<br>atatatttttttttttttttttttttttttttttttttgagacggagtctcgctctgtctcccaggctgaagtgcagtggtgcaatctcagctcactgca<br>agctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgctaccacgcccggctaattttttgt<font color="green"><u>NNNNN<br></u></font><font color="red">TAGTAGAGACGGGGTTTCACCGTGTTAGCTAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCG<br>TGAGCCACCGCGCCCGGCCGATTTTTTGTATTTTT</font><font color="green"><u>NNNNN</u></font>agacgaggtttcactgtgttagccgggatggtctcgatcttctgactttgtgatctgccc<br>acctcagccttcaaaaccttttaaatgatgtttacactagaggagttctgctcatacaatattgagaaatggacacttgaaatacaaaaatcaattttct<br>attttgcactattttcctacatgagtctaaaatatgtattatcttctctatgctaattagatgttagttagaatataagagaatacaattacaactcaag<br>ttttcttctattgccttatattttgtttttatagttttgtctatttaaagtcagaattttaaaaagacagagagaagcctgacaaataatcccttagtca<br>tacatcaattaaaagttctttttgttctgccgtca	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	576	442	NA	intergenic
0	chr9	19279254	19279503	1002083	0	-	1104685686242	NA	NA	SINE	Alu	NCAI	ttcaccctctaggtattttaaaccattgtttctgggaatcttgttaaaaatagatttttttttcttctgaggcagggtcttttgctctgttgcccacgct<br>ggagtgctacagtggcacaatcggagccactcctgggctccagtgatcctcccacctcagccttctgagtagctaggactacatgtgcatgccaccacac<br>cttgctaattttttttttttttttgtcttgagaaggagtttcactctgttgcccagactggagcccagtggcacaatcttggctcactgcaacctccacc<br>tcctgggttcaagtgattctcctgcctcagcctcccaagtagcaggaactacaggtgctcgccaccatgcccaactaatttttgtatttttttag<font color="green"><u>NNNNN<br></u></font><font color="red">AAGGAGTTTCACTCTGTTGCCCAGACTGGAGCCCAGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCC<br>TCCCGAGTAGCAGGAACTACAGGTGCTCGCCACCATGCCCAACTAATTTTTGTATTTTTTTAGTAAAGA</font><font color="green"><u>NNNNN</u></font>tttcaccatgttggacaggctggtct<br>tgaactcctgaccacaagtgatcggcttgcctccgccccccaaagtgctgggattacaggcgtgaaccaccacaccgggcccttgctcatttttattttt<br>attttttgtgaactcctggcctcaagcaatcctcctcccacctcagcctcccaaagcgttgggattacaggtgtaagccaccacactggaccagaataca<br>gattgtgattcagtaggtctggaatagtgcctaagtttctgagtttctaacaagcttccaggtcttttggacaatactggtccatgggctacaatttgaa<br>tagttaggcccttaattatgttccccttcccttaaagtcaagcttctgggggggcagagtggagggggc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr8	128856064	128856065	1002084	0	-	1104685372002	NA	NA	SINE	Alu	NCAI	gaggcagagcttgcagtgagccgagattgcgccactgc<font color="green"><u>CAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCAACTCTACTAAAAATACAAAAA<br>AAATTAGCCGGGCATGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGC<br>CGAGATTGCGCCACTGCACTACAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAATAATAATAATGTAGACATGCATCAATAATTCAGAGGCT<br>AGGAGGCTCCCCAGAGAAACCATGAAGAATATCAACAATCCCCTGCCACAGGACTTAGCAGCTTTGGAAGGCATCGTCCAAGCAGCCACTCTGGAAAGAA<br>AGGTGCTTCTCTCAAGCAATCTGTACAAAGCTCCCTGTGAACACATCACATCTAGTCTGCCCAGGAAGACAAGGGATTCCCACCTCCTATTAAAAAAACA<br>GCCAAACAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGAGAGGGTGGATCACAAGGTCAGGAGATCGAGACCCTCCTGGC<br>TAACATGGTGAAACCGCGTCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAG<br>GAGAATGGCGTGAACCCGGGAAGCGGAGCTTACAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCAACTGAGCAAGACTCCATCTCTAAAAAAA<br></u></font><font color="red">AGGAGATCGAGACCCTCCTGGCTAACATGGTGAAACCGCGTCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCA<br>GCTACTCAGAAGCTGAGGCAGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCA<br>AGACTCCGTCTCAAAAAAAA</font><font color="green"><u>CAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCAACTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGT<br>GGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCA<br>CTACAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAATAATAATAATGTAGACATGCATCAATAATTCAGAGGCTAGGAGGCTCCCCAGAGAA<br>ACCATGAAGAATATCAACAATCCCCTGCCACAGGACTTAGCAGCTTTGGAAGGCATCGTCCAAGCAGCCACTCTGGAAAGAAAGGTGCTTCTCTCAAGCA<br>ATCTGTACAAAGCTCCCTGTGAACACATCACATCTAGTCTGCCCAGGAAGACAAGGGATTCCCACCTCCTATTAAAAAAACAGCCAAACAGGCCAGGCGT<br>GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGAGAGGGTGGATCACAAGGTCAGGAGATCGAGACCCTCCTGGCTAACATGGTGAAACCGCG<br>TCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAGGAGAATGGCGTGAACCCG<br>GGAAGCGGAGCTTACAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCAACTGAGCAAGACTCCATCTCTAAAAAAA</u></font>cactaaaaatacaaaaaa<br>aaattagccggtcgtggtgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	145337257	145337258	1002085	0	+	1104685543994	CCCTACAAAATTTCCCTCCAA	CGAGCGTTTTTGTGGTAGAAC	SINE	Alu	NCAI	atttatcttattccaaatagcacacgagactaaatgttcactcacagtagtgtatcttactataattt<font color="green"><u>TTTTTTTTTTTGAGACAGGGTCTCTCTGCTGC<br>CCAGGCTGGAGTGCAGTGTTGAAATCTCAGCTCACTGCAACCTCCTTCTCCTGGGTTCAAGCGATCCTCCCACCTCAGCCCCCCAGGTAGCTGGGACCAC<br>AGTCACACACCACCATGCCTGGCTAATTTTTTTGTTTGTTTTTTGTTTTTTGTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGG<br>TGCAATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACACCACCATGCC<br></u></font><font color="red">GCATGGTGGTGTGTGACTGTGGTCCCAGCTACCTGGGGGGCTGAGGTGGGAGGATCGCTTGAACCCAGGAGAAGGAGGTTGCAGTGAGCTGAGATTTCAG<br>CACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAACAAAA</font><font color="green"><u>TTTTTTTTTTTGAGACAGGGTCTCTCTGCTGCCCAGGCTGGAGTGCAG<br>TGTTGAAATCTCAGCTCACTGCAACCTCCTTCTCCTGGGTTCAAGCGATCCTCCCACCTCAGCCCCCCAGGTAGCTGGGACCACAGTCACACACCACCAT<br>GCCTGGCTAATTTTTTTGTTTGTTTTTTGTTTTTTGTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCAC<br>TGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACACCACCATGCC</u></font>gaattgattgcctttg<br>tatttaggttgttagaagctctgtatatattctggatattaatactttggct	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1585	1400	NA	intergenic
0	chr3	193354980	193354981	1002086	0	-		CTCTTGACACATCTGTTATATT	GCCTACATCTAGTATGTATA	SINE	Alu	AluYb8	tttaaatattactaatattaagacatataaagccaaatatcttcctttataacacatacagtaactcataaatataatgtacttatatttattaatattt<br>ataatgaactaaaatagtcaaataatattgcttaagacattacttggaacatgtaagattacataaaaaatataaatgcctacatctagtatgtatatat<br>gtgtatgtgtacatatatacacataatttttaggaagctaagctgcttctttttttgctaattggcaagttcactatcaatttttcacatacccgtggca<br>gatgatcttgcgtattataactggcatcataatcagagagaacatcaagaacttcagaatacatgtcaatcaaagatttctgt<font color="green"><u>AAAAATTTTAAAAAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGTAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTAAAAAGTT</u></font>taattataaaacagtaaaagtaaagaaaaaaatataacagatgtgtcaagagaaaaaagtgataaatt<br>caaattgtttttccataatcattgtactgttttctcaaattacataaatacatcttcatcgtaaaaactaaaacggtacagattaaaagtccatttctca<br>ttcagtttatttagatacaatgatttaataaagtaaattaattcaggatttcctaacattctaattaaataagatggaaattattacttaatactgatga<br>gctaatactgaatgcaagaaaagaccattaacaccaaaaaggcaaaaaaaaggtggtcaggtaaccaactgacaatgaaattattctttgctaagtttga<br>ggcatgcatgagaga	Other	<UL><LI>Gallus GN, Cardaioli E, Rufa A, Da Pozzo P, Bianchi S, D'Eramo C, Collura M, Tumino M, Pavone L, Federico A. Alu-element insertion in an OPA1 intron sequence associated with autosomal dominant optic atrophy. Mol Vis. 2010 Feb 10;16:178-83. <a href="http://www.ncbi.nlm.nih.gov/pubmed/20157369">PMID: 20157369</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	52	604	274	ADOA	intron:OPA1:NM:130836:8/30
0	chr6	77980774	77980775	2000001	0	+	Chinese1; RIP_L1_chr6_078_01	CTCATGACCTTTCTTCATGT	CTGCTTTTGTGAATGATGAG	LINE	L1	Ta-1	ataaacagattttagagtgtgtgtgaatgactaatagattttaatgcctttaatcaatatatcataggagagggaaattaattaattcagcctgatgcac<br>tcagtagttcagaagccaataaaaaatctaaatggagatatgcattatgccattgtaaatgcaaatatgaatttaaaaaattatagatttgagcccctta<br>cttctgccacagagctcatgacctttcttcttgttttctccgtctaaggcacaccaaccctctttcttatttgactgtgtcatactgttgtctctgcaca<br>gaactctgctgtctcttaacctagccaattccttctcacctttttagttccaactttcttgtttcttccaactactcacagtacaaaggcaaccccatta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgtgctctcatataattataaacttctcttcattacctcttattataaatgtaattatctaattatgtaaccatttgttt<br>aatctatctccacactgaaagctatatgctatgtgagagtgagcaggggtcatacctgcttcactatcccccgccctttttctcatcattcacaaaagca<br>gatcacaggattttgaacatataatgaacatataaagaaattaagaaatattaattaaataaatgaattaaggaaagaataaaacaaagagattatttgt<br>taccttggtacagctatgtttagttttcactgttactgctgtcattttgagatggaggggacttgagagtattttagaccttctatattatgttcagcga<br>gaggtctttcaatctttcat	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr3	101279608	101279609	2000002	0	+	Chinese2; RIP_L1_chr3_102_01	TATGCTTGGAACGTGATAAG	TCAGTCTCTTAGACAAGATC	LINE	L1	Ta-1	acatgatagtaatcagtctcttagacaagatctcgttttttaaaatcatttggaaaagactatgcctaccttcttttattttagtaaactatatacaata<br>taaacatttccattttagtcattttcaagtgtacagttcaatggcattaagtacattcacgttcttgtacaaccatcactactatccatctccagaactt<br>tttcatcatcccatactgaaaattcatacctattaaacagtaactgcccattcttccctttccccagcccctggtaaacactattctactttctttcttt<br>atgatttgactattctaggcacttcatataggtggacttatacaatatttgtccttttgtgcctggcttatctcagtgtataatgcctccaaagtttatc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>catgttgtaccatgtatcagaacttcattcctttttaagactgaataatattccattgtatgtacatgcaacatttttta<br>atctattcatctgttcatggatatttgggttgcttccaccttttggttattatcaataatgctacaatgacattagagtacaagtgtctgtttgtgtctc<br>tgctttcaatttctttgggtatattactaggagtagaatggctgcagaatatgttcattctgtgtttggttacaaatatatgtggaggctgaattggccc<br>caaaggccaccaatttacaaatgtgttttaatttcatttcacattaaactttccaaatgagctaggaggagacagaaacttaccgtggcttatcacgttc<br>caagcatagtgccaggtact	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr8	73787776	73793823	2000003	0	-	238346;Chinese3;LID3; RIP_L1_chr8_073_01;AC213218	TATTAACACCAAGTGGAAGG;NA	TAGAATTGGTACAGAACTGC;NA	LINE	L1	L1HS	tcccagcctaccaaaatgataacgctgggttttatttttggaaaaagtacttttcatcttgtaaaaatttaatggcctttcagtgacagggaagttctga<br>gtggttttcactggctcttttctggccgcagcagaaggtggatgctacggctaggacctccccctgcttgaagggacagccagggagaggaaacacgccc<br>tctgcattgtctgggtgctgctgcttcacagattgtgcctgtacaacattttttctcttcttccctctctgagctagaggcagggcagaggtagccagac<br>ctttagaaaagattgccaatattaacatctaacttctgatagtacttttctgtctacagatgtttgagtgccttaattcctttatctttt<font color="green"><u>AAGATTTGCA<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTTGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGACATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTGCA</u></font>atgagcagagatttccttccacttggtgttaatataaaatga<br>tcatacatctgatcattaatataagacttggaccagggcttctaaaggttgaatatgcatctgaatcacctgggggatcttgttaaaaggtagattctga<br>tcctgtgtttgtggagcgggctgccaggctgctatggctcccaggtggttctgatgttgctggctcatggacagcacctgcaggagcaagggagggttca<br>ggataacagtagaggagggtgagaaggagaagatgcaggttccctctttttgttctgagggtgtgtctgttctcttctcacccaggataatcatccatca<br>tccaagcctacgtccttgggaggaagcctccgctaccagcaaaggccc	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/52;NA	NA;NA	NA;NA	NA;NA	intron:KCNB2:NM:004770:2/3;intron:KCNB2:NM:004770:2/3	
0	chr21	19517561	19517562	2000004	0	+	Chinese4; RIP_L1_chr21_018_01	GTATGTCAATTATACATGAC	AATGCCTATCAGGTCATCTT	LINE	L1	Ta-1	acatgaaaagccttaaagaaagcaggttatattcagaatcacattaacaaagtaaaggttcaaaacagtattatttttatataagaattacaactttgat<br>gctttgaaaataaattatttgtatgtcaattatacatgactaatttcaattttaagttgttattctttgtagtaacaaatctagaatattaatctttacc<br>ttgttaaaagcctgcttttatttactacaaatacattgtgtagtaaacaagatgttcaagtcagtaaagcagaacacttcaacatctctgctcattagaa<br>agtggcatttgggccgggcgcggtggctcaggcctgtaatcccagcactttgggaggccgagactggcggatcatgaggtcaggagatcgagaccatcct<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ggctaacaaggtgaaacccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccag<br>ctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagctggcagtgagccaagatcgcgccactgcactccagcctaggggacgagtg<br>agactacctttcaaaaaaaaaaaaaaaaaaaaaagcggcattcaatatgatattgaattcatctttaacctatatgtgaaaagatgacctgataggcatt<br>aaaaagttgttttttctgaatgcttgcttatatagcatagaatggagggtgggctgttaaaatgaggcaataacctgtttcattcggggtcaatgtgttc<br>aagaaagaaagcttgatatc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	85318159	85324220	2000005	0	+	L1HS222;Chinese5;239250; RIP_L1_chr6_085_01;AC226594	TTTGTCAGGTAAGCTAGGTT;NA	TATTTGCCTACATTCATGGC;NA	LINE	L1	L1HS	taaagccaatactttagaaatgatatttgcctacattcatggcacaatgactttaaaatggaaggaaacacaagcatttatatcaacagctatagatggc<br>tattcatattctgaagagaaaaaaagagaaaaactgtaattgtagatactataagtcttaatatcaaataaaagccctggaattcagcattgtctttgta<br>tcctatatactattgtcaatgtattgagccaggaactaagattcatgagtctgatgaattacatttaatatctaaggcttaaatttaataaatttttcca<br>agagcacttaatagtttatgagataactgatgattatataagtaagatactgtgcttcactcttctggagataagaattatgttg<font color="green"><u>AGAAATGTGAGGGGA<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCTACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGTGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCCGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTTGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>CCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAAGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGAAGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACACCATAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAACTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAACGATACCCAGGAATTGAACTCAGCTCTGCAC<br>CAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAGATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>AAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAGCCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGA<br>GAAAGCAGGAAAGATCTAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAACAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAGAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAA<br>TACAAACTACCATCAGAGAGTACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>GATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGCCTGG<br>TTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTCTCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAGTTGTCCCTGTTTGCAGACGACATGATTGTTT<br>ATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCCTGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGACCAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTAAACTAAAGAGCTACTGCACAGCTAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>CGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAACCCCATCAAAAAGTGGGTGAAGG<br>ACATGAACAGACACTTCTCAAAAGAACACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTAA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATG<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAAAAAAGAAATGTTTTTTTTAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGTCAGGGGA</u></font>aagttaatattttatttcaaatt<br>tccttcttaatgactgagacattacaagaggagaaagaattgaaagggaaatatttacttataaaaccaaagaatttaaaaattaatcagaaaacactac<br>aaatatggtttcatttattcttctcctcctcttcttcctctttcttctccattttagaattcttccacagttaatagaaagagattagaaaataaccttc<br>cttaaattaagatatctgtacataaaaacctagcttacctgacaaacttcctgaagaatttggcaaagctcttggggtagatgtggatgttttctcctgg<br>tattcctcaaataccagcagagaaggtacactagttcctcacctaatccattatttcaggtc	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6195;NA	118;NA	NA;NA	intergenic;intergenic	
0	chr9	9236253	9236254	2000006	0	+	Chinese6; RIP_L1_chr9_009_01	GACCACAAATGAATTGACAC	TAGATTCAGTAACTCTGGTG	LINE	L1	Ta-1	ctttttttttgttgttgttgtttggccatgatattctaaacatggaaagttaccttgcatgtctccatgaacttattagtctgagtcaattctaaacaat<br>aaggggttatatttaaaaagagcaaaattggccaggtgcggtgtctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggt<br>caggagttcaagaccagcctggccaacatggtgaaaccctgcctctaccaaaaatacaaaaaagtagctgggcacctgtaaccccagctacccaggaggc<br>tgaggcaggagaattgcttgaatccaggaggtggaggctgcagtgagccgagactgtgccattgcactccagcctgggcaacaagaacaaaaccccatcc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>caaaataaataaataaatacacaaataaggaacaaaattatttgagagagctctcatcccaaacaactatatttctgata<br>cctatgggaaaatcaaatttaaaaatggacacaaaggagtataaaagctagccttagatactcctttaataagattaaaaagcagaaattagattagaaa<br>caaagttaaaattcaaatccacccataaattctcctctctgccctcttatactctctcaacttcctgggagtccctgacactccagatcttttgcatttc<br>tggtccccagatttaaaattccctttttctaaatctagctccatttccttagtacattcctttagctaaagaatgaattatttgtttgaattcatttgaa<br>ttatgacttttggttttggg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/45	NA	NA	NA	intron:PTPRD:NM:002839:9/46	
0	chr5	77347681	77347682	2000007	0	-	Chinese7; RIP_L1_chr5_077_01	CGAGTCTGTGCTTATATGTA	ATCCACATTTAGTTACCCAG	LINE	L1	Ta-1	ttaccaaaataagaggtgagaaagtcttgtgtgctttataatgtatagtgattactaaaataaaatatgagaaattatcataaatttgtatatcaaaatt<br>tatatacataaggaagaagttatctttagtattaaaaaccatttatttgaagtaatatttgctggaagattcaaatatatttcttcgagtctgtgcttat<br>atgtaagagttaaccaaatttgccgtttacttttttaaatcctattctaggtcaatactaggttaatgctagcctcaatgaaatggattgaaggtaaaat<br>caagacccactttctacagtttataggataaatgagacaatactgtgactttctgcattacaaatcttatcaattgagacatacattggttttaaaagta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctaattttaaagatgaagctgtgcctctgtttatagctattttcttacctcgtcatttttataaattatatatcaaaata<br>gatactgatgtaaagtaagccaaacaaaactagatacaaagagcattttatatactgcagattttcatatctttgaaattcaaaaacagaatggattgat<br>aatacttaatgactgggtaactaaatgtggattaaagcataaaaggctgggaaacattgttttcataaagctttacgtggaaatgtcatctttgaatagt<br>aatgtggatgctgaacaaggcttattccaaggcacttacttgctattccatgttttatttttcgaatctcattttaaattttataattcaatcattttga<br>acagctatgttcaaaagaag	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:AP3B1:NM:003664:22/27	
0	chr2	23191263	23191264	2000008	0	+	Chinese8; RIP_L1_chr2_023_01	CTTATGCTCTTACTAGTGTC	TCTGATGTGACTCTTGAATC	LINE	L1	Ta-1	aatgaaaaatgcttttcactacaaattggtaagaatcacaagatggcaacagcagagcattaaaccaagtgtggggtcctgtgcaattgcatgagtggtg<br>tattagtccattctccctctgctattaggacatacctgagactgggtaatttataaaggaaagaactttaattgactcacagttccgcatggctagggag<br>gcctcatggaacttacaatcatggtgaaagggaaagccaatatgtccttcttcacacggtggcagcaaggagaagtgcagattgaacatgggaaaaaacc<br>ccccgataaaactatcagatctcatgagaactcactcactatcacaagaacagcatggaggtaaccacccccatgatgcaattacttcccagcaggttcc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>taccacaatacatggggattacgggaactacaattcaagatgagatttgggcagggacacagccaaccacatcagacggt<br>gtgctcagggaagcctaactgcctggcttcttacttccctcatctttgttccagtgtcaccatatattagagaagtcattcttctcaccattctatgtgg<br>gatagttactcctgtggcactctttgtttctttcccttgttttgcagttctccttagcacttgccaccagctaatctactctgcactaaatcatttactt<br>ctttctttggtgtctatctcctcctgtggaaatataagggccatacatgctttatcacccagggtatagaatatgcccaccacagagtagccactcaaat<br>atttgctgattgaatgaaca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr12	12933361	12933362	2000009	0	-	Chinese9; RIP_L1_chr12_012_01	CACTAGTGATTAAGGATGTG	AATTCATAGTGCACCAAGTG	LINE	L1	Ta-1	acttgagcccaggaatacaataccagcctgggcaacatggcaaaaccccatctctacaaaaactacaaaaattagctgtgtgtggtggcctgtgcctgca<br>gtcccagctactgggaaggtggaggtgggaggatcgcttgagccccggaggcagaggttgcagtgagccaagattgctccactgcactccagcctgggtg<br>gcagagccagactctgtatcaaaataaataaataaataaaattgaaataaaaaataaaattgagacaacttgtaaatgtgaggtttagtccaaaggtctt<br>gcagactttcctttgtcatctgttctaatatgtacattcaccaaaataaaaataaattcggccaggcacagtggcttatgcctgtaatcccagcacttcg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ggaggctgaggcaggcgcctcggtggtgtgtgcctgtagtcccagctacttggtacttgggaggctaagctgggaggatg<br>gtttgagcctgggaggtgaggctgcagtgagccgagatcacaccactgcactccagcctgggcaatagagccagacattgtctcaaaaaaaaaaaaagca<br>aattaaaataataacacatattcacctgaggatttttgcccatgatttctttgaatttccccagaatgtaagtgctctagaacatagtcaagctctcata<br>gttgcttgttgaatttaactaaagaaaaatgctttgttcacttaaagaaatatcattattttataacaattttataagaatttaacataaaattttctct<br>tggactatacagcttggtat	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	52/52	NA	NA	NA	intergenic	
0	chr6	78749188	78749189	2000010	0	+	Chinese10; RIP_L1_chr6_078_02	TCTGTGCATGTCAGTAAATG	GGCATAAAGTAAGCTACATC	LINE	L1	Ta-1	attaaagtcagaaaaacatgatagttaaaactacaatacattattagcagaattgagttaattttggaagctctcattaatgagatgacaattgtggcat<br>aaagtaagctacatctgattagaagtatataattacatattcgatattaactttaaagaaggaaataagaataatttttctcttatttcctctttaatga<br>acaagacattaaagaattgaagacataaacaatattttagtagatttaaatgaaagagataaataatgagcaaagaaaaatttatattagagtgaaaatg<br>tagggcttgcataaaagatcaaatgtaggaaaattaaagactgcactaaagcatattaaaaagattgtcactttcagaacaatcttcaattatcagtcat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aaaaacagaaatgcttacgtttctgaaagaaatatttatcatacaattaattctcactttgatttgagagacaagttttc<br>tgagatttaaattttcctaattttttcttttattattaatcaatgattcattcagtcattcattcattcatccattcaacaattatgtatccagggccaa<br>tcatggattaaagcgaaccgacttaagagttttaatatattaataatgtctcataaagatactttgaaaattggctgcatagtatttttattaaggtaaa<br>tttacatttactgacatgcacagatcttatgtttttaatctattgagatattttatacctcagttataataaggcataatttgaatacattaaaattcat<br>ctacctttttggaagtaaag	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	94559455	94565490	2000011	0	-	238931;L1HS418;Chinese11; RIP_L1_chr4_094_01;AC216113	GTCTAACATAAGCTCTAACG;NA	AGCACCAAGAATATAAGAGG;NA	LINE	L1	L1HS	tgaatgattttgagtcactttactgaatacattctggttaagaagtaatttgtttggcaaatttctgcacttgctaaaaacatgcagaaaagaggaaatt<br>aatactagtaaaattcatgctgattagcaccaagaatataagaggctccctagaagggccacgatggtttttttagggagtactaaagggatcttggttc<br>attaatggaaaatacacagaaaattgagaaaaatcatcagaacaaaaattttactatcaaaaccactattttggataaagattaaaaaccttacagagta<br>gaaatctcacgattttttttagcgtgccagttcctttctgtcatgccatggacattgctcatggaacattggtaaaaatatcatt<font color="green"><u>AAGATGCAAGTTTTA<br></u></font><font color="red">GTGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCGGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACTAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCAAGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGTGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGCTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACGAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGGAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACATCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATGCCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGACAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCGCTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAACCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGATATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGTGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATTAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATGCAAGTTTTA</u></font>aatatgttttcttaggcagcaacatacaaaataaaaacatgttgatttt<br>gatcattttcattagttactaacatttaaaaaataaagagctttataaaatgacagaagcagaatggattattatgaaaaaagtaaatgaacacattgag<br>gtacatatttctctatttgaaattggtattaaaacagagaactacgttcacaaagacagaaatcgttagagcttatgttagacttacctgggctatatag<br>aataatgactcttattccatataaaaattcttatatttttatcttagtaataattcatgtctagaagtatcagattctgtttcatattagtaaacgttta<br>acatgtgagtagactgtctgaccaattatgatgtta	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6380;NA	328;NA	NA;NA	intron:GRID2:NM:001510:14/16;intron:GRID2:NM:001510:14/16	
0	chr2	144618526	144624565	2000012	0	+	Chinese12; RIP_L1_chr2_144_01	CCCTGTTCTACAACATTACT	TTAGACTCTGGAACTCAAAG	LINE	L1	L1HS	tttctcatagagagaaacagctgagaaacctacagaccatcaaattatgactccagtgtttcattacaagcaattagactctggaactcaaaggtacaac<br>caaaatgctcagtgtaatttggttaataccatttaagagctgggccacaggtgcttaaatctacagaacagaaaaattctagcgactatatagggtccta<br>ttactttatgggtaattacttgtatagctagagcctcaaaggtggactcaggagaaaatacatgtgaagtgaggagaaagactgaaaattacacatattc<br>attccacaagcaatgactgtgaatggctaccctgtgtcaggcacagttcctctcaaggaactcaaaccccaacaggaaagatgggc<font color="green"><u>ATAAATTCTTTCCT<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTACTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCAAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTACAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACCGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGACTTTGACGAGCTAAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATGGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATCATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGCCCTAATAGACATCTACAGAACTTTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAACAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATTGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACCAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGTTT<br>GTTTATCTAGAAAACCCCACTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AGGCATTCTTATACACCAATAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACACAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTATCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTAGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATATAAAAAAAAAAATAAAATAAA</font><font color="green"><u>ATAAATTCTTTCCT</u></font>tcagcaaacactgaatagtgctgtaagaaagaaatatctatatgac<br>ctgttagtaatgttgtagaacagagtgcttatgtattcaaacacttaggaagttatcactaataaatgacattgatctgtgtatagaattaaaaggaagt<br>ttccatgtggaaaagggcatcacctgacaggaaagacagccaggaaaggcaagttgaggtgagagcccttaaaaattatggaatttggacatggtttcta<br>gatactaagaatcatggagggtatttgagggtcaccaggcagggtcatttctgagaaacctcttctaggaagcacatccaaaaacggtaggcaaaatata<br>aaagatgccactttgcaatgcctagatgagcttctgtaat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr14	48117943	48117944	2000013	0	+	Chinese13; RIP_L1_chr14_047_01	CTCAAAGAACGATCGTAATC	GTTAATGTGATAGCTGTAGG	LINE	L1	Ta-1	tagtatattctcagtaaatggtattattatgggcatgattataaattcccttatctttccaatgacagtatatgccatttgaagacaaaaaccattttta<br>tagttctttgagtgtttccctcaatgactagaaagtagcctgctatatacataatgtctaataatgatttgctcaaagaacgatcgtaatcaaaaataaa<br>tagagggcaataagtgctaaaccataaggcactgaaagataagcacaagcaaagttcagctgcaaagaatatctgagtgggctggtatagtcagagaaag<br>atctatggcagacaggggaccaggaatgggaagtaaaagcctttcataggtagcataagactggataaataaaatcacccaatgttctctgcagaataca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tttcagaagcatattttgacctaattgaagtgttcttaaaataaagttcataagaaagtgttcataaaatcacttaactt<br>tggaatttcttcatgttgtgttcaacacttctttcttaaaccatatttaaacagatcttctttagaatacaaacagaaatggagaagagataatacattt<br>ttacctaaaattatattaacatcaattgtacctacagctatcacattaacacttaaaaatgatggtttatatatgtattctgacctcatgtctagtacct<br>agaggaaataattatttagtaatatcaatacatttttaaatgtctaaaattcatcatataaaatatttgtatactcattaaatgttttaattattatttc<br>catagtcatagtgattaaga	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:MDGA2:NM:001113498:1/17	
0	chr4	103873120	103875607	2000014	0	-	Chinese14; RIP_L1_chr4_104_01	GAACACACTTAGTACATGCT	ACTTGTTTAGACTAACCTAC	LINE	L1	L1HS	ctctgattaacaattttcattagtaatgtgttacacaaccagtacttgtttagactaacctacattttaccaatttctttgcacattgttccttcctttt<br>tggttctatgtcatatttctaaagcatatctttcagtagatttttccctggtaaaaaatggcatatgttcttaaatgtatttgtttgacaatatctttca<br>tttgtcttttgtttgagtgacagttaactggctacagaattcaacattgaatgatttctttatctctgtactttgaagactttatttatcttccatcttc<br>tattgttgctgataagtactgagaatctgctctattgtttattcgattatgattaatctctttttctctgtctagattcttt<font color="green"><u>AAGATTTTATTTTTGCCT<br></u></font><font color="red">GAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACAT<br>CAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGA<br>GCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTA<br>TTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAAC<br>CAGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATT<br>CAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGA<br>TAAGCAACTTCAGCAAAGTCTCAGGATACGAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGG<br>TGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTG<br>CTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAA<br>TTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCG<br>CATTGCCAAGTCAATCCTAAGCCAAAAGAATAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGG<br>TACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGA<br>AAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACC<br>TTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATA<br>GGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAG<br>CAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGACTAATATCCAGAATCTACAA<br>TGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCC<br>AAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCGATC<br>ATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGA<br>AGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTG<br>CTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAG<br>AAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTC<br>TCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATAT<br>CACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAG<br>CATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTTATTT<br>TTGCCT</u></font>ttggtagtctatagtttctcaacattttatctaagtatctatttttacttaatcctgattagaactcatttgacttcctgtgtccaaatcaata<br>aaaaccctaatcaattctgtaaagtttgaagccagttttcttctcaaatattatatcttcttcattctttcaattatgtttctgaaactactattagttg<br>tgttttagatcttttccataatctaaatctctcattttccacctcatttttttgtgtgtgtgtgctatgctcttaagtaatttcctcatatctactactt<br>tgctgtgttctctcttcagccatgtctagactgctgtttgggtacttagtggttttttttttagttgagtaaattttacagttttttc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:NHEDC1:NM:001100874:3/12	
0	chr3	24987863	24987864	2000015	0	-	Chinese15; RIP_L1_chr3_024_01	TGTTCTCCTTGACACCTTAT	TCAGCATGTCTTTTCAATGG	LINE	L1	Ta-1	cacctcagtttcttgggagctgggactacaggtgtaccacatctggctaagttttatctattttttgtaaagacaggatctcactatgttgcctaagctg<br>gtctctaattcctgggctcaagtaatcctcctgcctcagcctcccaaagtgccaggattacctatgtgagccaccacacccgaccaagccttgctaatat<br>taatgtatcattttttagaactctaggttttttaagcacacattatgttatagtagaaacatctgcattagaaataacttggcaaccatatttgcaagac<br>attttgcaaagaaagaacagcactcttcattaaatgctgtctccaacttcccaccaccttctaatttctaaaggcaatgaatttagttaaaaaattatca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctctgaactggctcgggtttcaaaaaaattaactcaactctggaaaaatactgtatttgtccatcaactatacttgaatt<br>tcagtgatttctttttttttttttttttgagatggagtctcattttgtcccccaggctggagtgcagtggtgtgacctcggctcactgcaagctctgcct<br>ccaggttcacgccattctccttcctcagtctcccgagtagctgggactacaggcagctgccaccacacctggctgattttctgtatttttagtagagaca<br>gggtttcaccgtgttagccaggatgatctcgatctcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgcgattacaggcgtgagccaccgc<br>gcctggccagcgattcttaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr11	60851745	60853916	2000016	0	+	Database16;L1HS26;AC003689; RIP_L1_chr11_060_01	AGTGTGTTATAAATGTAACT	TGTGATACATTTAAAGTTCA	LINE	L1	L1HS	cctcgaggccactctacaattgggaaagcacctgcctctgtaattgtggctttgtgtgtttcacaccctccttggtctccagctctctgagaaaaagtcc<br>tgtttactctgtgatatgcaggtatctgcgggtggcagcagagcttcaagcttaaaagatgtagactttgtatgaccaaatgcctgtcgtggttgaatgt<br>ggaaataaatggtggtacagtcacacaacagaatactatacagcaatgaaaaagaacaagctcctatacacaataacatggatgaatcgtccaagaataa<br>tgagtgaaaaaaattgaaacacaaaaggtataaactttgtgatacatttaaagttcaaagaaaagggccaggcac<font color="green"><u>GGTGGCTCACACCTGTAATCCTAGC<br></u></font><font color="red">ACTTTGGGAGGCTGAGGCAGATGGAGCACTTGAGGCTAGGAGTTCAAGACCGGCCTAGCCAACAAGACGAAACCCCGTCTCTACTAAAAAAATAAAAATT<br>AGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAA<br>AATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAG<br>AGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGA<br>GAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCC<br>ATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGA<br>ACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGT<br>AACCAAAAGAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATC<br>TTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGG<br>ATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCAT<br>TACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTA<br>AAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAA<br>TATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGA<br>AGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGA<br>GTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTG<br>GGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAA<br>AAAAAAAGAATAAAATCTAAATTTCTTAAAAAAAAAAAAAATAAAAAAAATAAAAAATAAAAATTAGCCAGACGT</font><font color="green"><u>GGTGGTGCACACCTGTAATCCCAGC<br></u></font>tgctcgggaggctgatgcaggagactcatttgaacctgggaggcggaagctgcagtgagccaagatggcaccactgcactccagcctgggtgacagactc<br>ttgtctcaaaataataaataaataaaataaagttcaaagaaaaggcaaagccaatctatgatgacagaagtcaggacagtggatacttgggtagggagca<br>gtgcggggcagtggggagcctcccaggtgctggttacaccagcacgtgcagtgtgtgaagttacatttataacacactgcatgtactgtgctgtgtgtat<br>cccatatataagtaaaaagttgttgttgttttaaattaagcatctgggttccagcccagctttaccacctggatg	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr7	113416177	113422207	2000017	0	-	AC002385;Database17; RIP_L1_chr7_113_01;AC206740	TGCCTGGTAAATTTGTATTC;NA	TATCTTAATGTCTATAAGAA;NA	LINE	L1	L1HS	gagaatctaccttttcctgagattgacatcctgacatgatgatgaaaataatcaagttaaaggaatttgacatgccaccaatcctttcttaatttattta<br>ggattccagtctgtatcaggaattatgccaggtatttgatatttagagttaaataaagtgaattttctaatctcaaatatcttaatgtctataagaagaa<br>cagacatgtgaataatatatatctgtcatatatttataacacctagtcagaacctggcatactgagggcaatttaatagtaatagtaatagtacccctac<br>tggtagtaataataataatgtctgatattgaaagtttattaaataccaggaatttttttgaggaccttattcatttattgctctt<font color="green"><u>AAAAATGCCATTATG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGAG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAACTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGACCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATGTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ACTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACGCTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGCCATTATG</u></font>tagatgcatgatttgtccattttctttatgacaaaactaaagctcagatggtca<br>ttgtgtcaaggtgttaacttggtaccatggccagctctatctggtgataccaaggaaaacttcacagatgtgctgaactctgaagaaagaatacaaattt<br>accaggcagaaaaatcaaggcagtggataggcaaagggaacagccagtgtaaagaggcaggagagataaaaaggagtagaaatctgagtatttcagtcaa<br>ctgcaactttagagtctagacagagaacgaagatgaatttgcagaagcaggtaggtggtcaatcaaggaaggaagatgttacttgcaatagtaagggttt<br>aaatgtaacaaagaagagggataaggtgtag	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr17	68455098	68461176	2000018	0	+	Database18;AC005939; RIP_L1_chr17_065_01	AGATATACATTTAGTCATGC	CAAGATAACCACTCACATTA	LINE	L1	L1HS	tggtggaaggcaaggaggagcaagtcacatcttacatggatggtggcaggcaaaataggagcttgtgaagagaaactcccatttttaaaaccatcagatt<br>tcatgagacccattcaccatcacgagaacagcatgggaaagacctgcccccatgattcaatcacctttcactggatccctcccacaccacgtgggaatta<br>tggaagctacaagatgagatttgggtggggacacagagccaagccatatcactactgcaacttatttttactttatcaatgttttaatttttaaagcttt<br>ttcactcttttgtaataacgcttagcttaaaacacaaacacatggtcagctgtacaaaaatattttctttccatatattgttattctac<font color="green"><u>AAGATTTTGTG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCTCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCAAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAACT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTAGCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTTAAATTAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTTTGTG</u></font>tactatgaac<br>tttttttatttttttttacttctcaaagttttttgtttaaaactaagatacaaatacacacattagcctaagtctacacagtgtcagaatcatcaatatc<br>actgtctttcactgtcacatcttgtgccactggaagatcttttggaacaataacgtgcatggagctgtcatctcctataataacaatgccttcttctgga<br>acatcccccgaaggatctccctgaggctgttttacagttaacttttttttctaataagtagagggagtatactctaaaataatgattgaaagtttaatat<br>agtaaatacataaaccagtaacatagttgtttatgatcattatcaagtattatgtactgtagatagttgtatgtgctgt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr7	74213595	74213596	2000019	0	+	L1HS44;Database19;AC004883; RIP_L1_chr7_073_01	ATATGCCTTTCTGTGCTCAT	AAAGACACCTTTGATGAGGT	LINE	L1	L1HS	agagtgcctggtttgtggtgataatgactcattgcagcctggaactccctgggctcaggtgatcctcccacttcagctcccagttgctgggactacaggc<br>atgcaccacaccgagctatcttttctttctttctttcttttctttttttctttttcttttttttttttttttgtagagctggagtcttaccttgttgccc<br>aggctggtctgaaaccccaggctcaagcgatccacccgccttggcctcccaaagtgctgggattacaggagccaccgtgccaggcctcatccttattttc<br>aaaagtacatgagccaaacaaaagacacctttgatgaggttcagcatgtagctgtgcttgttatgtccagtttaaacaggaattattt<font color="green"><u>GATAATATGTTT<br></u></font><font color="red">AATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCT<br>AGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTT<br>TCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAG<br>ATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTA<br>GCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATA<br>TGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCAT<br>TTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTG<br>AAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACA<br>ACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACC<br>CCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCAT<br>CAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGC<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAA<br>TACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCA<br>TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GA<br>TAATATGTTT</u></font>gcattttctttttagagacagggtcttgttctgtcacccaggctggagtgtagtattgcaattatggttctctgctgtctcaaactcctg<br>agtttaagtgatcctcctgctttagcctgccaagtagctggggctacaggtgtgagccactgtttccagctaatttttaaattttttgtagagatggggt<br>cttgctatgttgcccaggctggtctcaaactcctggcctcaagcaatcctcttgccttggcctccaaaagtcctgggattataggtgtgagcattttaat<br>atattttctcatttgattcccaagaaaactttgtaataacagagatgggaatgagcacagaaaggcatatgatttttacctactgtgagtctcaaatg	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	57	2288	478	NA	intron:GTF2IRD2:NM:173537:15/16	
0	chrX	118569422	118575674	2000020	0	-	Database20;AC004000; RIP_L1_chrX_118_01	ACAAAGAGTGACCCAAGAT	TCTTCAGTGGATGTCTTACT	LINE	L1	L1HS	tgtattattattattattttttgagatggagtctcgctctgtcacccaggctggagtgcagcggcgcaatctcggctcattgcaacctccgtctcccggg<br>ttcaagcgattctcctgcctcagcttcctgagtagctgggattacaggtgtgcaccaccaggcctggctaatttttttgtatgttagtacagacggggtt<br>tcaccatgttgcccagctggtcttgaactcctgacttcatgtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcct<br>ggccacgtacagtgatttttaaaaatcagatccttttactcacctgcttaaaacattttaatgactttacatcacactt<font color="green"><u>AGAATAAAATCTAAATTTCTT<br></u></font><font color="red">GGTGCTTCCCAGGAAGATCTGGGAAGCAGGATCTGGGCCCGGTGGAGCAGGTACTGTAAAATCTTAATCACTGTAAAATCCAAATCAACCACAAAAATGA<br>GTACGTGCAAATAATTCACACCAGGAAAATTCAGTAAGCTTTTAAAAAGACACAGATGATCCCTTTTAAAACAAAGCATTCTTATCCTCAAAAACTGAGA<br>TGAAAAAGAAAACAAAGCGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGC<br>ATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAG<br>GCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCC<br>GAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACGACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATT<br>GCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGG<br>GAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGC<br>AGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGTCTGCCT<br>CCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACA<br>GACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCA<br>AAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCT<br>CACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCA<br>AACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTG<br>AAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCACCAATGGAAGATGAAATGAATG<br>AAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATGTGGGACTATGTGAAAAGACCAAATCTACGTCT<br>GATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCC<br>AACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGA<br>AGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGC<br>CAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAA<br>ATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACA<br>ACTGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCAT<br>AATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGT<br>CAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATG<br>GAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGT<br>AAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAA<br>AGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGG<br>AATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACAC<br>CTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATC<br>AAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGA<br>AGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTAT<br>AGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAA<br>GCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTT<br>TTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATAT<br>CACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTC<br>GACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAA<br>CCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGA<br>AAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATGCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATA<br>TCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCA<br>TCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGA<br>TGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATC<br>TATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCC<br>TATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTT<br>TGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATC<br>AATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAA<br>AATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATGGAAGAAC<br>ATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGA<br>CTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGG<br>AGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA<br>ACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAAT<br>GGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAA<br>CGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCA<br>ATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAA<br>CATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCC<br>CATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATC<br>AGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTG<br>GAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAAT<br>ACCATTTGACCTAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTA<br>TTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCA<br>TAAAAAATTATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCAT<br>ATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAG<br>GGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGT<br>GCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATAAAATCTAAATTTCTT</u></font>actggagcctacaagccatagtacta<br>atatggtggcaaagtttaacaactggttctctgggggaaaataaaaaagggctgaattgtagcatttaccaatttcaacagcatcagtactcccactatg<br>gctgatttcaggctgccaaatgcgaagtcgaccagctcccaaatttcctgaaatttaacagtcagttctcctgagccagtaggaagtggttccagcatgc<br>tcgtaggctacaaggtcctatatgatctgctctgcccaccgatttttttctttttttaaaaaaatattttttaagttgggtgcagtggctcacgcctgta<br>atcccagcattttgggaggccgaggtgggcagataacttgaggttgggagttt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:SLC25A43:NM:145305:3/5	
0	chr5	165847587	165848572	2000021	0	+	Database23; RIP_L1_chr5_165_01	ACAGACAAATGGATAGATGC	TGGAATACGTTCAGTCATAG	LINE	L1	L1HS	ggaggaaaatcagtgctttaatcaagatcaactcaaacataatatttattgttattgcatgtaagtgtgtgaaaaatgaactgggtgatagtgccatgtc<br>agaactattttcctcaacattaccgctaatcatctaaacttcattaggaaccaactccggtacaggtgggaaaacatttagttgtgttctgctctgctga<br>gcccattcaaaatagcttttctgcctcactccagcggtttcatgaagatggggattgatctgtgaatctcttgcatggtatgtttgaaatttttatatga<br>gtataaagtgtcaggtggtgtcaaatgctctaattaccaggcagcagagggagactcagttgacaaggagttaccatttttat<font color="green"><u>AAGATACGACTCTGCTT<br></u></font><font color="red">GAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCGCTCTGATGGTGAAC<br>TCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAA<br>CACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAA<br>AGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGT<br>GTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAA<br>GACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAGCAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATACGACTCTGCTT</u></font>t<br>gatttttatggacagcaggtcctgttctttattgcatggtgaagtcaaagaagctagtgtggagtccttgatttaaatattatgaatggtaaatgaaagc<br>aaactctagcacatgctgattctgctaaaagcactcagttcattgaaccttccttgatttctttcctttttcatattcttctctcaaccttcaggattcc<br>actttccttaataaaatgtaaaggaagcatctatccatttgtctgttcaatgggctacatcctcttctagccactaacaaagtcaatctgttctcctcca<br>gcacccaggtacacattccaaacagtattggtccatgagccaagagtgaaagaaatgcctcatgggaccatcgtgcatgagg	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr7	141620467	141626514	2000022	0	-	Database24;Druze55;238448;AC073647; RIP_L1_chr7_141_01	ACTTGCTCATCTTTGAACTG	AGATCAGCTGAAACTCTAAG	LINE	L1	L1HS	gtgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccacaaaaaaggatgagagttcatgtcctttgtagggacatggat<br>gaagctggaaaccatcattctgagcaagctatcgcaaagacagaaaaccaaacaccacatgttctcactcataggtgggaattgaataatgagagcactt<br>ggacaccaggcagggaacatcacacaccagggcctgtcgtggggtgtgaggagaggggagggacagcattaggagaaatacctaatataaatgataagtt<br>agtgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaggacttaaagtataatttta<font color="green"><u>AAAAAAA<br></u></font><font color="red">GAGAGGGAGGAGCCAAGATGCCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAATTATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGAATAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAACCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAATGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATTCCC<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGACGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCTCATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGGACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>TTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCAATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGAAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTCTGNTAAAAAAAAAAAAAAAAGAAAAG</font><font color="green"><u>AAAAAAA</u></font>tagtaaaataatattatctttttgcatacctggaaaaaaaaaaaggctcac<br>aaggctctacatggtctgcattccagttaccactctgactgccattgctttctcctctgcacactccatttcagcatctttgttatgccttccctaggat<br>ctctcacttattactcactatgcctggaatgttctttaacaagtttccgaatgtatcaccaccttacctctctcaatccttccctgaaaaccttatttga<br>aatttcaacactcctgcaagagatattccctttcattcctgtttcacttttcttcacaatacttcttcatgatctaatatactattttcaaaagctttat<br>tgaaatataaatcacattccataaagttgactcattgaaaat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr18	12491263	12491264	2000023	0	+	Database25; RIP_L1_chr18_012_01;AC206473	TCTTCCACCATTCCATATTG;NA	TAGAAGTAACACTCTCACAG;NA	LINE	L1	L1HS	aaaatcaggaacaaggcaaggatgaccacttctatattcaacatagtactggtagttctagccagagcagttaggcaaaaaaagaaataaaaggcatcca<br>attggaaagaaagtaataaaagtgtccctgtttgcagatgacatgatcttacagatagaaaactccataaaaaattttttcaatacactaacaacaaaaa<br>gacaatcccattgacaacagcaccaaaaagaataaaatatctaggagtaaatttaataaggaggtaaaagacttatatacaaaaactatgagacagaaac<br>aaatggaagaataatattcatgaattgaaagacttactgttaacatgtgaatactacccaaagctatatacagatccaatagaatcccc<font color="green"><u>AAGAAAATCCT<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAAATGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTACACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAA<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAACACCATGGGAAAAAAAAAAAAAAACCATACCAAGCCAACATGGAAATGTTTGTTATTTTAATTGTTATGATGGTT<br>TCATGGCTGTTTGCATGTGTCAAAACTCTTCCAATTTGTGTACGTTTAATATGTGAACTTATTGTATGCTGGTTACACCCCCAAAAAACTGTTTAATTTA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATCCT</u></font>aatggtattttttacagaagtagaagataatcctaaaattcctatggaaccacaaaagacaatgaatagccaat<br>caatcttgagaaagaataacaaagccagagacatcacactttctgatcttacaatatattataaagttacaataacaaaaacagcatggtactggcaaac<br>aacagtggaacagaacaaagagtccagaaatgaacccacacatatacagtcaactgatcttttttttttctttctttctttccatggaatcttggttcac<br>ccaggctagagtggagtggtgcaatcacagctcactacagccttgatctcctgggctcaagtgatccactctgaagctttgtcaccagaaagtacattta<br>attatttcaacccat	Other;OTHER	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:SPIRE1:NM:001128626:8/17;intron:SPIRE1:NM:001128626:8/17	
0	chr3	83853129	83855349	2000024	0	-	Database27;238697; RIP_L1_chr3_083_01;AC208155	GTAGAAGCTTCTTTAAAGCC;NA	AGATTGGCAGATGCATAGAA;NA	LINE	L1	L1HS	ttaataaatatttagcaagtgtttcctatttttatgacagtagggtttaattcatctatgaagatttctccagtctctttacccatcttgaacttaccaa<br>ttttcaatactaatataaattcctataatcagcaccatgccaagtacaaatgttctttttgtatgctctttgatctttataacgtgatcataaatgtatc<br>acatagaccacatgacagattggcagatgcatagaattattcaataataaacacatatagactacttaaaattaagtttaaactttatcaccaaagtata<br>gctttagtgattttattttgcatttaataagaactctggtaatgctacaactaaaaggaaagtatgttcaaaagcaaagggtatatt<font color="green"><u>AAAAGGCCATATA<br></u></font><font color="red">TTTTGTGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAAT<br>GGGCAAAACCTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGG<br>CAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCC<br>CATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACC<br>AACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGA<br>AGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAA<br>TATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACT<br>TTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTAT<br>ACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATAT<br>CTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGT<br>AGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAG<br>AAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATG<br>GGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAAGAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCA<br>TCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACA<br>GACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAG<br>ATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACCCTGTTGG<br>TGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGG<br>GTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACC<br>CAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTA<br>GGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAA<br>TGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATGGTATTGGGAGATATACCTAATGCT<br>AGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGCCATATA</u></font>atctattttctaataagattttttgttttgaacaaaaatgtattctaccaggtgagttaatattta<br>caatattatccaacattatcacctctgacactatataaataagctcagaaaactatacattcttaataatagatctagtctttgcaaatttatgaataag<br>aggcttcacaagtttattttagtgttctaacttttttgtatatatcttctcctatcctgggggtgttgggggaagtaaataatgaaactactctacctca<br>taatataactattatttgaatctgttacctaatttaaacttgaacgaatttcatttacaatgatgagaattttatttgagcaataaggagaaaacacacc<br>tctcaatcaaactgagaataa	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr9	92911888	92917935	2000025	0	+	Database28; RIP_L1_chr9_089_01	ATTTGCTTACTGTCCTAGTG	GTTACAGATAAGCCAAAGTG	LINE	L1	L1HS	caatgctaaccactcctaaaagaaaaccaaggtaattgttgtgtttgatatagtctttcacactttaaaacgtgtttatgtacaaaatatatgtctctag<br>aaagaagttgggaagaactgacatcttgacaatattgactctttctttccatgaacacagaatatctcttcattaatttagttattctgtggtttctttt<br>atcatctttttgtagtctttctcatatagatcttatacatattttttacagcttatacctaagaatttcattattaggggtgcaaatgtacatagtaata<br>tgtttttaatttcaaattttatgtatttattgctgatccatagaaaagtgtttgacttttgtatattaatcttgcaccttgctat<font color="green"><u>AATTGCTTCTTATTG<br></u></font><font color="red">AGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTACTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCAGGTCACTCCCACCCAAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACAGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACTGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGATGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTACAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATGGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCACCAGTGTG<br>CTGTATTCAGGAAACCCATTTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTTCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCCGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATTGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAGTAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTGTTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGGTCAACCATTGTGGAAGTCAGTGTGGCGACTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGAGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAATAAAATAAAATAAAATAAAAAAAA</font><font color="green"><u>AATTGCTTCTTATTG</u></font>ccaggctttttgttgttgttgattcttccagattttc<br>tgcataaagattacatcatctgcaaacaaagagggttttctttctttcttttcaatcagtataccttttatcccctttcttgttttattgcattagctag<br>gacttttggtatgatattgagaagcagtggtgacaggggatatccttgccttgtttctgatcttagtgggaaagctttggttttctcagcatcgaaagca<br>tttttaattgcagaaataatgtatgaacctattctctttatcaaagtaaagttacagataagccaaagtgcctttttcccaaattatcaatgccaaccac<br>tcctaaaagaaaaccaaggtaattgttgtgttttatacattctttcat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr6	24811892	24817950	2000026	0	-	AL512428;Database29; RIP_L1_chr6_024_01;AC213274	AAACATCCATGTCAGGAGTT;NA	GATGTATGGTGATTTCACTC;NA	LINE	L1	L1HS	gcatgatggcaggtgcctgtaatcccagctactcaggaggctgaggagggagaattgcttgaacccaggaagttgcagtgagccaagattgtgccattgt<br>actccagcctgggtggcagagccagactctgtctcaaaaaaaaagagagagagagagaaaaggaaagtatatcttattttaaaagggagatgagatgtat<br>ggtgatttcactcatttttattgtgaacaacaaaaagcaaggacaaataagatttgaaaagaagtactaaattcagtatgccactgaattcccagatcct<br>tccccgcaagctctctttattaagcagagaaccagttttgattgtcataaggaggtgtcgtgagcagggagagagctagaatgt<font color="green"><u>AAACAAGTACTAAACG<br></u></font><font color="red">GAACAATAATACCACCGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGC<br>ATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGTGCGAGCCGAAGCAGGGCGAG<br>GCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCC<br>GAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATT<br>GCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGG<br>GAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGC<br>AGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCT<br>CCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACA<br>GACCTGCAGCTGAGAGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCA<br>AAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCT<br>CACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCA<br>AACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTG<br>AAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATG<br>AAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCT<br>GATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCC<br>AACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGA<br>AGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGC<br>CAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAA<br>ATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACA<br>ACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCAT<br>AATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAACGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGT<br>CAAGACCCATCAGTGTCCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATG<br>GAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGT<br>AAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAA<br>AGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGG<br>AATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACAC<br>CTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATC<br>AAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGA<br>AGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTAT<br>AGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAA<br>GCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTT<br>TTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATAT<br>CACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTC<br>GACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAA<br>CCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGA<br>AAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATA<br>TCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATTCAGCAGCACATCAAAAAGCTTGTCCACCATGATCAAGTGGGCTTCA<br>TCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGA<br>TGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATC<br>TATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCC<br>TATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTT<br>TGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATC<br>AATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAA<br>AATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAA<br>GAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCA<br>ATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAG<br>CTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAA<br>CAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTCGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAAT<br>AAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTCAAACTGGATGCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATT<br>TAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAA<br>AGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCT<br>ACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACA<br>ACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGC<br>CATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAGGTGCTGGAGAGGATGC<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAA<br>TACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCA<br>TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGATGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATTAAAAAAAAAAAAAAGAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTACTAAACG</u></font>aatgggaactcctgacatggatgtt<br>tccctttcaatggcaagatgtaatgtttgacctactttcatcacaaaaaaataagacaaatcagtcttgagaaaagaatgagagaaggccaggtgcagtg<br>gctcatgcctgtaatcccagcactttggaaggctgaggcaggcgtatcacttgaggtcaggagatcgagaccagcctggtcaacatgatgaaaccccgtc<br>tctactaaaaatacaaaaaaaattagccaggcatggtggcacacacctgtaatcccagctactggggaggctgaggcaggagaatcgcttgaatccagga<br>gacagaggtttcagtgagccaagattgcaccactgcactccaacctgggcgacagagac	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:FAM65B:NM:014722:21/23;intron:FAM65B:NM:014722:21/23	
0	chr9	104443980	104444727	2000027	0	-	L1HS486;Database30; RIP_L1_chr9_101_01	TTCTGCCATTCAGTTGACAT	CATAAGTCACATCTGCATAC	LINE	L1	L1HS	cacgcctggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggc<br>ctcccgaagtgctgggattacaggcgtgagccaccacgcccagctacaagttgtttttttaaatgttagttaattggagcaattattggtggaatattat<br>tttgagaatacctttataagcgcatttgaatggatgtttttgcctagccaatgaccatgtgttgaactatggtcgggtagacaaaatgaagacttgaatt<br>ctgacatttaggagctgacagtctagtgaatgaggtcgaaatgtaagtaaatggttataaaacaatgggatgtgtgatttat<font color="green"><u>AAGAATAGGGATATATTC<br></u></font><font color="red">CAGAGAAATGCAAATCAAAACCACTATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGC<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAA<br>TACCACTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCA<br>TATTCTCACTCATAGGTGGGAATTGCACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGGGATATATTC</u></font>agatatacagagggaaataatgaactcttctcag<br>atatttggtgatgagggaaaaacactggacttggatcctgtaaatgaaaaggggttttaggtttggaacaaattcacagacaaaggaaatgacatatgca<br>aattcaccaagacctgaaagataaatttagtatggctggagcattaattgcatatgaaaaggatttgagatgattctggaaaagtagtcaacttgataac<br>ataccacacagagtttgtatgccaagctaaggcatttgcattttatatgcagagcggatgtcaactgaatggcagaacattagccctgacatatttataa<br>aaatcataatcctgtaacaaattaaccaaataaagtaatacagtataa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	905	139	NA	intron:GRIN3A:NM:133445:2/9	
0	chr7	49719849	49725897	2000028	0	-	AC009645;Database31; RIP_L1_chr7_049_01;AC207178	GAATCTCCATAGTCCATTAC;NA	ATCACAGATGCTTGTTACTG;NA	LINE	L1	L1HS	tggccgtgtgcggtggctcttgcctgtaatcccagcatttgggaggccgaggagggtggatcgcttgaggtcaggagttcaagaccagcctgacagggtg<br>aaaacctgtctctactaaaaatacaaaaaattagctgggcatggtggcaggtgcctataatcccagctacttgggaggctgaggcagtagaattacttga<br>acctggtaggtggaggttgcagtgagccgagatcatgccactgcactccagcctgggtgacagagtgagactctgtctgaaaaaatcatgctgctataaa<br>gacacatgcacacgtatgtttattgcagcactcttcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggatt<font color="green"><u>AAGAAAATGG<br></u></font><font color="red">AGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCGGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATTGCTAAGTCAACTCTAAGCCAAAAGAACAAAGCTGGAGGCATCACGCT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AATACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATGG</u></font>catatatatgccatggaatactatgcagccataaaaaatga<br>tgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaaaaccaaacactgcatgttctcact<br>cataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacactctaggaactgttgtggggtggggggaggggggagggatagcat<br>taggagatatacctaatgctaaatgatgagttaatgggtgcagcacaccagcatggcacatgtatgcatatgtaactaacctgcacattttgcacatgta<br>ccctaaaacttaaagtataattaaaaaaaaaaaaacttgaggcacttac	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr4	108127829	108131714	2000029	0	-	L1HS430;Database32; RIP_L1_chr4_108_01;AC206894	AGCTGTGTTGATCACAATTG;NA	ATTTGCATGTTGTGCTCACT;NA	LINE	L1	L1HS	gaatttagaaaacaaaaccgaaagcagctcagtagctgtcagtgaagagcttcatgtgtccaggcattcagggaccccagagatagcatttgcatgttgt<br>gctcactgcaaacttgggcagtcataatcttggaggcattgttgtcctcattttataagcaacagtaaaacattacctttatagtagactggattgttaa<br>atccaggaagattcatgccctgttaatcttgtcccctgctaccatgactccaagtatttttaattccacaaagcctttctgcagttttcatcaccttctt<br>gttttccctgactgcttccttattctggtattttgctgagtcatgataaggtatcagagaaccaacatgtaggaacaagt<font color="green"><u>AAAGAGAATCCTAATGTTTT<br></u></font><font color="red">GGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACC<br>AACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACA<br>GGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACAT<br>TAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCC<br>CAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGA<br>ACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGA<br>ACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAA<br>TCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCA<br>CAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACAC<br>AAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGA<br>GAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTAC<br>GCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAA<br>TAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGA<br>GGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAG<br>CCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGC<br>AGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATAT<br>AAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAAATCAACAACCCTTCATGCTAAAAACTCTCAATAAA<br>TTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTT<br>TGAAAACCGGCGCAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAA<br>GGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTT<br>AAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAA<br>TCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAA<br>ACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCC<br>AAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAA<br>GAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAAC<br>AGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAA<br>CCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCC<br>TTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCA<br>GGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTC<br>TGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAA<br>TCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTA<br>TGCATCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCTCACACCAGTTAGAATGGCA<br>ATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGT<br>GGAAGTCAGTGTGGCAATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATG<br>CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATT<br>AAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCA<br>TTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAA<br>TATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCAC<br>CAGCATGGCACATGTATACATATGTAACTAACCTGCACAAGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAATCCTAA<br>TGTTTT</u></font>aatattttggaggaggatatgatccatatgattacattttgtttgggttgggtttctcagacctcctttgacctgtaaccaaaaaattcttcag<br>cagtatttacaattctgcccgtctgcacccaaatggtttgtgtgtgtgtgtgtgtgtgtgtgcatacacacacacgcctgcacgcacacacgtgcacatg<br>catgagtatgtgcttccttcttgtactgtataataggtctgtagcatacaagctgttaagtcattttatggaagttctgtggaaatgctaatgtatacta<br>gcaattgtgatcaacacagctgttaatcatcaatgtttctgtatctccaaaaaagccaacaaacctgagaactgtcgctgatttta	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	4034;NA	127;NA	NA;NA	intergenic;intergenic	
0	chr1	31040683	31041637	2000030	0	+	Database33; RIP_L1_chr1_030_01	CAAACAGGATCTAACATAGG	TGAGAATGTACACAGAATGC	LINE	L1	L1HS	gagtaaaaattgtcacttcctgacagggccaaaaaccttaagactgtaagtaaaatccaaaatctgcctttgtttggcttcataacctcaagaggttttt<br>aaacctgaggttcctatgtgatcaatgtagagagaaaaagtgatgtttctaatgcaaaactataatacaccatgaggagtttccatgtaaccagggttat<br>aagattgtatccctgtgcattgtttttaagtcttgttatctaccagtagactagaataaatcctgaattcatctagatttatctgtgctttcttccatga<br>actactgaaaatggaaactgctctgttcctgaatctctataagctgaaactaaataaattttaaaaaacaagcctcatcaacctacaacatgggag<font color="green"><u>AAAA<br></u></font><font color="red">TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGTTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGACAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAATAATAAATCAATAAAAAAATAAATAAAT</font><font color="green"><u>AAAT</u></font>aaataaataaataaataaaaaaaacaagcctcatgcctgat<br>atatgggtcacatgaaaagttcacctaatcacccaaggttatgaccagagacattcaaatcacaaactaggatgagaagttgacattttcacactgtaga<br>cagcttttcccaagatgttggaacaagactccatatcataatgagattattaccccttttaacactacctttcccacttggcaggatagtggtataattg<br>cagtttcacagtcagtagcttctgctggtcactcgacagaacctgacctaagagatcctttagtgtctattggttaaataagaaaatgtctgtgatgttg<br>ctaatactacctgctgttcctatgtaaattcctctgggaaagttgagacctatat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr4	181876803	181878288	2000031	0	-	Database34;237877; RIP_L1_chr4_182_01	ATTAGACGCTAGTAAACCTG	CTACATTGAGCATGAAATGG	LINE	L1	L1HS	ttatactatcaggtttgaccaatagaaaaatgtaagtaggtaatatttaaactacattgagcatgaaatggttcttagtattgagatgagaaaaatcaga<br>aaagatgaagaatgagatgaaaatatttccatagaaaagttttattagatacaaaacttgaaactagccacatttttgtacttataggggtttctataaa<br>ccactggtcataaaacatgcaaaaatattttccccaaacattaaatttggctccattattgagtgcctggtgtgttgcagatgcggtagtgagtgcaccc<br>tgcaatcctatgcaataggaatcacatctcctttcacaactgggtaacatgcaagccaagcaactagctcatgtctacgtagct<font color="green"><u>AGAAAGTGCTGTAGAG<br></u></font><font color="red">TTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGG<br>TTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCC<br>CAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGG<br>GCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGT<br>GATGCCTCCAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACA<br>TGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCA<br>TCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAG<br>AGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGA<br>GAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATAC<br>CATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATT<br>CACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGC<br>ACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGTGCTGTAG<br>AG</u></font>aacgttgaaattcaaatctgaccagcttccaatcaatcctcccaacgtgctatgatgaaaagtatacaagttaccagaaaagaggttttggattctca<br>gccttgagtgatgcttaaataggtgaacaaccatcgtctgtcctgtttgaaattaggtctttctgataagagcataggaaacagctaatttcctgagacc<br>ttttccaggtttactagcgtctaatttttcctgcaacagttagttttagtgatttattataacctccaagataatgcaaaatgaattcttttttctttct<br>agataaatgtgctcaggatatttaaactggcaacaaaagttatcaaaattatgctatgaaaaagtaattttatttgtagttatgaa	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr3	137072332	137073427	2000032	0	+	Database35;L1HS301;L1HS372; RIP_L1_chr3_138_01	GGTAGAATGCTCATACATGT	GCATGTGGTAATTTCTACTG	LINE	L1	L1HS	ttgaataaaaacactcagaagctattttaaaatgcagaaaagaagagaaagaggaaatagcacaggtatggtaaatttgacccaaacatatcagtaacta<br>cattcaaatcaaaaagactaaatgcttgaggacaggagtttgagaccagcctgggcaagagagagaccccatttctaaaaagaaaaagaaaaagaaaaat<br>aattagcctgttgtggtggcatgcttgtagtcccacctacttgggaggctgaggcaggaggattgcttaagcaccggactttgaggctgcagtgagctgt<br>gatgcaccactgtactccagtctgggtgacagagagatacatcattataaataaataaataaataaaataaaagttctttagagtg<font color="green"><u>AATAAAAAATAAAA<br></u></font><font color="red">CTCATCTACACTGTTATGAAAGACACATGTAAAACGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGG<br>ATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATC<br>TGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGA<br>CACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGAT<br>ATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTG<br>GGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGT<br>ATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCA<br>AATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGG<br>GACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATG<br>AGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAG<br>ATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTAT</font><font color="green"><u>AATA<br>AAAAAAAAAA</u></font>aaaaaaaaacacaaggataaataagttgaaggtaagaagaaagaaaacatcagaataaagctgatataataaaatgtttaactcataatg<br>aatatataataattttaaattttatgcacttaataatatagaagcaaaatataatgcacaaattttataggtttatgagaactggatacatccatgatca<br>aaatgagtaattatgacatatctatgaataattcattttaataaacaggccaaaaaaatcagcaaagttatagggaatcaaaaacatgtatgagcattct<br>acccaccatctatgggatagatattcttttttaaaattttattctccctggctcttcatttttattttttctaaagtttttatttttgatttttat	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr8	129465169	129471266	2000033	0	-	239178;Database36; RIP_L1_chr8_129_01;AC225986	TCGCTTTCTCAAATGGAAGT;NA	AGTTACCTCTCATTTGTCTG;NA	LINE	L1	L1HS	cttccccttacttcacagccacgtagcacttatggctgtaagagccagcacttggccaagtgcaaatgcatgaccttattaatttatgcatgtgaaactt<br>ttcttagggagggagaagtattccattaaatgatatctatctccccaattccattaattagttaataaaaaagttaaagagaatttcatggggatacact<br>ggcttctgtgatagaatatcagctaagtgagatattaataaaaagacaacatgtgtctatatcagactcctcagtaaggtgactgaggctaaaactgaca<br>atgtaagttacctctcatttgtctgatgtgtggattcactgttctttttatctgggttagtttttgctgtgatgaaataaggttt<font color="green"><u>AAAAACACAAGCTGG<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACTGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCCAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTCAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGACTGAATAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAACACAAGCTGG</u></font>atagctagaaagaaggaattcattgtgaagcaggtgctatacattgcctcatgtagtagtctcaaccagaggctaagtattgtgtaa<br>gcctgtttgctatacaggatactaatgctcagagaaggtgatatgttttcctggggtcacacaggtaacaagtatccaagctggactttaatcctagttg<br>atctgacctaaaagtctattctcttctcactgcaccatattttatgaggacatgctgtaagtcaagacaggatgtgaacagagaattgacaattgaaggg<br>agacagagaagatcaggaaagttcctttcacattaaataagttcatggaatgaatgggggagaacatggaggaggtgggctaaattcctgcaattaga	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr6	129319531	129325574	2000034	0	+	Database38; RIP_L1_chr6_129_01;AC217520	CCCAACTGATTTAAGTCAAC;NA	CGAACCAGAAAGTAAGTCAT;NA	LINE	L1	L1HS	atggataggagaaaggaccctgagttattataacagagtccaagagtcagagagctgcacagatggggtgggatatgccaggtcaaggaaagggccatgg<br>gagtgggtgcctgatgcggagaggaggaaaagaggtcagcgaggaggtaaagagcctgggcacagtcatgttggtagattttacagttacataaggagag<br>gtaggaaggaagatggcgaaccagaaagtaagtcattaataatggctggaaggtggttttatgagggatgtggattttcagagagaaagagaaaactgat<br>taagaagtagcatcaaagaggagcaaagttgatgcacaacctatctctagatcttgaaggtcttatagaatattgtttctaagtc<font color="green"><u>AGAAGTATGATGACA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGCTCTACAGCTCCCAGTGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGTACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGAAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATCATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAAACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAACATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTATGATGACA</u></font>aatggtcattttccttaaaataaaatcatatatcactactt<br>actgacttgcacctatatgtacttctgggaaatttagccagcatgtatttccacaatacagggatagtttttgttctgtggactgctaaatgatcacagc<br>ctaatgtattgccttctcagtaaacacacgttgacttaaatcagttgggtaaattgtaaactcaattccttactttgactttagtttgcaaattaagaat<br>agtgtacttttcttattttcaggccttatttataattcctaatgctatacactattatgttacagcttgcacttgtattttgacactttctaattattgt<br>caaattataaatactactaattaatatatccttgattcttcata	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:LAMA2:NM:000426:1/65;intron:LAMA2:NM:000426:1/65	
0	chr13	30215838	30221844	2000035	0	-	L1HS235;Database39; RIP_L1_chr13_029_01	ACAGGATCTTAAGGTTGAAG	CATTGTGTGCCATGAAAATG	LINE	L1	L1HS	tcaaaatggtattgtaggttctacccaaagtagtcaagaaaaagaaataaaagatatccagtggaaaaagacaaagtaatatctttatttgcagacgata<br>tgatcttatacatagaaagtgctaagacacacacacacacacacacactattagaactaataaattagttcaaagatacaagatgttattacatgatttt<br>tcatggatagtgtatataaatgcaatgaaactagagataatctaatagacatatatatatctagatatattttatatatatattaaacattgtgtgccat<br>gaaaatgaaacacagcataccaaaacttacggaatgcaacaaaagtggtggtcagaaagaaatttgtagctgtaaaaacctacatt<font color="green"><u>AAAAAGTAGTTCTC<br></u></font><font color="red">GAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGAC<br>AGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTC<br>CGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAG<br>ACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCT<br>GGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCC<br>TGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGA<br>GAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGG<br>AGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACC<br>AGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAA<br>CTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCT<br>GAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAA<br>TGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGA<br>GCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAA<br>TGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAA<br>AACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCT<br>CGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCT<br>CAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAAT<br>TTTCAACCCAGAATTTCATATCCAGCCAAATTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCA<br>CCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATC<br>GAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATA<br>AATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCA<br>GAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGACAAAAC<br>AGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTAT<br>GCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCC<br>CACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAG<br>AACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGC<br>AAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTA<br>CATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACAC<br>CACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGAC<br>ACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGG<br>AAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAA<br>GAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTAC<br>AAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTC<br>TGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCA<br>GAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATT<br>CTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAA<br>ACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGT<br>AATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAA<br>ACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGG<br>AAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGA<br>GAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCC<br>CAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAA<br>CAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAGCTTACAAGGGATGTGAAGGACCTCTTCAA<br>GGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATG<br>GCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATAT<br>GGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTAC<br>AGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTG<br>ATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAAC<br>TGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGG<br>CATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAA<br>CTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGC<br>TAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAA<br>AGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACA<br>CCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAAC<br>TAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAA<br>TGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACA<br>ATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGA<br>AATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGG<br>ACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTA<br>GTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGTAGTTCTC</u></font>aaatcaatatccaaaccttcaaccttaagatcctgtatctatttagatatattttatatacattagataaaatctaata<br>aatgatatataatctaacacatactatatattagataaaatctaatcattctagtggaactattagaacattagttctaaatacagattattttagattt<br>tttagggatataatttttttatattatttctgaataatgataattctctttctttctataatttgtttctttttcttcacattatgtactgactagaata<br>tccagtaaaatgtttaatagaaatagttaatgatgagcatcctggtctgatccctgataccagaacaaaagctttcaacacttgcccaataagtatgata<br>ttggctg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	59	6441	420	NA	intergenic	
0	chr5	24370543	24373436	2000036	0	-	238869;Database40; RIP_L1_chr5_024_01	TATATCTTCTACGAAGGAGC	ATCTTTGAGAATGCTGATGC	LINE	L1	L1HS	catgtcatgtttgttaccaaagtaatatagatacctttaaagactgatctcatcagtctataaatgtatttgtttctagtgtatttaaaataattgcctc<br>aatctattttctcatatttttctaaataattctcttctcttttttatgatctcaagtttgttaaagttataccaatggtatttttttctatttttaaatt<br>aaaaacaaatgtgtaatttcttgaatagtccatctgtatctttgagaatgctgatgcatattaactttgtattgttgcacaacagataatcagttatttg<br>tagtgtgcatgatgctatattatatgatttatgtcataaaaatgttgcattacttgcttgaaattgaatacacttatgttataat<font color="green"><u>AAAAATTTTGTTTTA<br></u></font><font color="red">GAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCT<br>TTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAA<br>TTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAG<br>GTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTC<br>AGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGAT<br>AGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTTGTACCAGTACCATGCTGTTTTGGTTACTGTAGC<br>CTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATG<br>AACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTT<br>TCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTATTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAA<br>GAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGT<br>CTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTG<br>AGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTG<br>CCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTTCAAAGGGAATGCTTCCAGT<br>TTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACATCCCATCAATACCTAATTTATTGAGAGTTTTTA<br>GCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATT<br>TATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCC<br>AGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGA<br>TGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTA<br>GAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCA<br>CTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGA<br>GAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGA<br>ACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATT<br>GCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACT<br>ATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAA<br>ACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGG<br>AGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCT<br>GCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAACACATGAAAAAAAAAAAAAAACAAAACAAAACAAAGCAAACATGGAAATG<br>TTTGTTATTTTAATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAAATTTGTGTACGTTAAATATGTGAAACTTATTGTATGCTGG<br>TTACACCTCAATAAAGCTGTTAAATTTTTTTAAATTTAAAAATATTATTTCAAGAATAAAATAACCAAACCATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAT<br>TTTGTTTTA</u></font>aaaaagtaattaaaaattggaatgattatttattttggggatatagatatgaagaaaaatattttcaaaccattaaacaatttttaatatt<br>tagtagacaccatttaatataatagcaaaactgagttttttaatgatgtcctcggttcattgtattaaaagagtttctcattggaaaaaatatgggaagc<br>attatatgaatgtaaatttgagcatataaaattgatagatccattataagattaatatccaaataataaaaatattcaaacattcaaataataaaaatat<br>cccatccaaacttaccaaacattaaaaataatacaaatattaaatatatatttaaaaagaaaatattcgaatttcattattgaggcagaaaagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr3	59852904	59852905	2000037	0	+	Database41; RIP_L1_chr3_059_01	AAAGCTGAAGCTAATGGAAC	ATTAACAGGGATTGCATCAC	LINE	L1	L1HS	ttctggccaactgacttagcaaagagcagcacaatatccttgggctgagaccagcgggtttgccactgtctctcaccggcaatcgcattcttgcttccaa<br>atccggctgataatttaggaaggttttatgtcaccgctgctcggcttctttttgtgctttgattacctattctcatacaacacttaaaggtggtcacaga<br>ataatctctaatgttttgctttctatgataaataaggggttcgtgaagttcattaacagggattgcatcaccctccaccctcttttacaaccacaccata<br>aaagtagcctctaattagttaaaagactacaaattataccatcaacgtgaggtatggcaaaatctgatggctctaattatcttaat<font color="green"><u>AATCAGCAGAACCA<br></u></font><font color="red">AGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAA<br>AAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAA<br>ATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAA<br>TAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATT<br>TGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACA<br>ATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA<br>ATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTC<br>ACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAG<br>CATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACAT<br>GTACCCTAAAACTTAGAGTATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATCAGCAGAACCA</u></font>ctctcaacctaataagagaatgagtcattagtggtagtttatgaagat<br>caccgacattctctttgttatggagtttgtccttcctgtgttaaaatttggacacactttctacttgaatctaaaaaggatgatttctaagaagttactg<br>aagcaatgcaagatcaaaacataataaccacattcattcttaatcagcattacagtgaaagtaatttaccacagaacacataattaagtcataaatgaaa<br>tctcaagacagaaattgctccccttttaagatttctcattgtccatacactcagaaatgagaagagggattttctcattctgatcctaaatctatcactg<br>aaatgatgacttcacttgcatttatgcattttgcttta	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:FHIT:NM:002012:8/10	
0	chr2	89029247	89032282	2000038	0	+	15600;Database42;L1HS360; RIP_L1_chr2_088_01	TATGGAAAGTGGCAACCTTT	GGAAGATGTCAGTTAGTTGT	LINE	L1	L1HS	cacccagaggtaagattgccactcagaggcagaccactgcgtatttctttccgcttttttatggctgtcacttgttcatgggctccagatatcttgtaaa<br>atctagggaagatgtcagttagttgtaccaagttttctcctgggaccttgagtattaattttggctgaggtcacaagtgccgaggtggttcctttccacc<br>acattccttgtggtttaaccgcaagggctcagtgtgaatgtagtgaagggaagtgggcaagcccagggctatatccagggcttcctgaggtctttgtgca<br>gaggtataagagtgagccagctcatggagcttgccactaagtggaaataaggaagaatcatctgaggcagccatggacattt<font color="green"><u>GAAAATATTAAAACTAAG<br></u></font><font color="red">CAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGC<br>AAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATC<br>AGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAG<br>AAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGC<br>CGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAG<br>GCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATA<br>AAATACTGGCAAACCGAATCCAGTTGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAA<br>ATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCC<br>TTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATG<br>GGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGC<br>AATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCC<br>ATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCA<br>ACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAA<br>GGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAAT<br>ATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTT<br>TAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATA<br>CTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATC<br>TACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTA<br>GAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGA<br>AGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGG<br>GATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCAT<br>CTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAG<br>ACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGA<br>TATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGT<br>GGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGG<br>TATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCC<br>AAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAG<br>GGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATATTAAAACTAAG</u></font>ttttgtggtaaagactaacacaggggcagtccagaggagactgatg<br>ttggtgagggtgagcaacatcacaaaccctacctggcattttctgagccattattatgtaccagcttttgtgctaagtgctgtacctgtattaaactgtt<br>ttatttccagtattcttgaagataggataccacaattttcccattttatagatgtgaaaaaggcacagagagggtaagtcatatggctaatgccacaggt<br>tttaagtggcagaatcagaatttgaactcaggcacatcttttctagactaatgctagtttgagttttttgggaagaggtaaagtttgaattgggctataa<br>aggccaggtggcaggggcaggagagaacattccaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:RPIA:NM:144563:4/9	
0	chr6	74865449	74866584	2000039	0	-	L1HS233;Database43; RIP_L1_chr6_074_01	TGTCTAAACTGTAAGTCTGG	TTATTCCTTGCCTCTGCATA	LINE	L1	L1HS	tactactactagaagcaaaacttcccaattatgttttaagataaactaagacctaaattttacttgagtagaaaacagtaataagcaaggcccctacttt<br>ctattgaaaaatatttaaaatctatgcacttattctacaaagtcaaagatttttaaaatgcaattattctattgcatgtttaaattaccatctttccttt<br>aaaaatattcagaaattcaattgtaataacatttgctctcacttcaaatgcttattctaagacaaccatggattagagagcagcaaaagagtttcaaaag<br>tgagtccttttctgagaaagcagagtcagagatttcttattccttgcctctgcatagatcaggaattctaaggttagagtagttt<font color="green"><u>AATAACTTGGTTTTC<br></u></font><font color="red">CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAATAAATAAATA</font><font color="green"><u>AATAACTTGGTTTTC</u></font>aatcctcagcacttggttgtagacaactaagacacagatagatatagat<br>gtggatatagataaacaaatgtttgtaaggtatctttaaaaaactttgatattctgtacttttttttcaaattacaaagataagtgagaggttttagaga<br>tactatttaatgacaattgtggatcaaatttcctatttacaaaagttttattttctgtctcctggccagacttacagtttagacatttaatgaatggaac<br>ctcaaataataagattttcacaaactaaaggactgtgtctttaacacacacaaaaaaaaactatataagaaaaaaagaactgaattaggcacaaatctcc<br>tatttttattctttgctatactgtgatccacataat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	59	1232	81	NA	intergenic	
0	chr4	123573786	123578005	2000040	0	-	Database44; RIP_L1_chr4_123_01	AAGCTTACCAGTTCTTTGTG	GAACTTCATCAAGGACTTTC	LINE	L1	L1HS	agatggtggagtcattaagataaaatgagcttggtcccaaatcaacacttgttggagagctgtctggtgatcagtaggacccctttgaactgtgatgtga<br>gcaagaaataaactactcttgtgaggccaccaagattttggctagcatttacctgaatactcatttttaaacttaattcttacagcatccctatgaaata<br>gttattatccccattttacaaatggaaaaccgaaaatgaaagtggctacaattcttgcatgaggcatagccaagatttgaatgcaggcctgtctgactcc<br>acatgcctccccctccctctctatctctctctttctatcctgaacgcagaagttcctgtggcgaacttcatcaaggactttcacagat<font color="green"><u>AAGAACCATTTT<br></u></font><font color="red">CCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGG<br>AAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTA<br>AATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAACAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACAC<br>ATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAA<br>ACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAAT<br>ACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAA<br>CATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCA<br>CCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAA<br>AGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAAC<br>TGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCA<br>GAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACA<br>TCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGA<br>CACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAG<br>AGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTC<br>TACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGAC<br>CAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAA<br>GGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCA<br>AAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCC<br>AGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCA<br>TATAAACAGAGCCAGAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAAT<br>AAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCC<br>CTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAAT<br>AAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTCTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTC<br>CTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCC<br>AAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAGTAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTA<br>CAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTG<br>CCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAA<br>AAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAA<br>AACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGAC<br>AAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCT<br>TCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCAT<br>TCAGGACATAGGCGTGGACAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGC<br>TTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCA<br>GAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACAT<br>TTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGA<br>ATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAAC<br>CATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAA<br>ATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGAC<br>TGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAA<br>TCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAA<br>GGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCA<br>GCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTATTAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACCATTTT</u></font>atgcccttatgcagaaatgcatcaactctgtccaccaccaacagatggcagtagtggttgcctgtaaa<br>ccagcactttgaatttatgaacaaatggacttaagaatattatgaaataaaacataacctgtgtgtgcacagagagtttccaaatgttttgctgcctttt<br>ctctggtgagggataattttacctttttgagaattatcattgccaagttatttaaatgcccggggcttgtatagtctagaatcatgaagaaatggtctag<br>aatgagaccatttgaaaaaatgaggaaattggtttagaatcatttaataaccaatatgttcccttcagactctgacatttcattgtgcacatgtgagaaa<br>atataaaaaactggacccac	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr10	6411581	6417629	2000041	0	-	L1HS171;Database45; RIP_L1_chr10_006_01;AC193127	AAGAAGAGCACTCTTTTCTG;NA	TGCATAAATGGCCAACATTG;NA	LINE	L1	L1HS	ctgtgtcacccacacggttgggctttaagagatctgaggcttctgtctcttagaacactccctggagggacccagtgaatacactgtgagaagcccccag<br>agatgcactgtggatgagaactaagacatttgacacaacggtgaggttcttggctgacagctactgtgcagccatgtgagtcagccttcctggatgttcc<br>agtgcaggtgagcccacgtggagcagaagaatataccagctaaacacagccagctatagacttgtgttaggtaataaagagttgtttttaagccactaag<br>ctttgggacgatttattttacagcaatagataactgagacagtacaataacaagagaatctatctcctgaagaagtctctttc<font color="green"><u>AGGAAAATGATTTGCTG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGTTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACTCAGCTGGAGATCTGAGAACGGGCAGACTGCATCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACCAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATCCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCAAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCTGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAGGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAAGGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACTGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATACT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AGAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCACTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGGAAAATGATTTGCTG</u></font>atttataaaattgtaagcatcacaactttcatga<br>actttccctgaaactctcacaggtggatagttgtagttaatttgcaagatgaagaagcctgtgagttgagaactgcatcaaggaaagccgtgaatttgcg<br>attcagaacagagcaactttcccatcattcacagcccaggatggctgagcacagccagaaaagagtgctcttcttttggccaggggcacctgccctacag<br>acaacaatttcttctagagcataaattgttcacctgaaaatattgtaaagtgttggtacttttagcaaggaaaaaagcttatattctagaaaaataaatt<br>cagaaaggacaccactcataattttggaattaccgataattaaattcaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6157;NA	91;NA	NA;NA	intergenic;intergenic	
0	chr2	34797629	34801576	2000042	0	+	Druze46; RIP_L1_chr2_034_01	ATAAGATATACATGCTACTG	TAGTATGTAATGCAGTTCTG	LINE	L1	L1HS	attgtaattttgtaattacattgaacccgccaacgtcctagtatgtaatgcagttctgattaagaaaaaggcatctctttaagttatgcactggagcatt<br>cactctcaacactgtggtggaagcaacaatgcatgccaagatagagcgtactacaaatatttgtaagaataccttgagtgctccttgagaaatcagactt<br>aatgggagatacccataattttttttaggttaactcaagatgtggtcctctcagtagctatgcattttgtaaagttcttgctctcttcttccagcacagt<br>tgggctgattttcctttgtgattcttaaatccttcatgcatacctttttagagtactgaatttattatactgtattttttt<font color="green"><u>AAAAAAATTATTATGTTTT<br></u></font><font color="red">GCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGC<br>CTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATA<br>AGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTT<br>TTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTTGTACCAGT<br>ACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAAT<br>GCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAA<br>ATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTATTTGTCTCCTCTTTTATTTCCTTGA<br>GCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTC<br>ACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTT<br>ATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATT<br>GAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCC<br>GGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACATCCCATCA<br>ATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGG<br>CTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTT<br>GATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCT<br>CTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTA<br>CCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGA<br>GCCTGTTATTGGTCGATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGT<br>TTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTT<br>GATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCAGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAG<br>GGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCT<br>TTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGCGT<br>CCCAGAGATTCTGGTATGTGGCGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGTCATTCAGGAG<br>CAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTATA<br>ATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATATTCTG<br>TTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTCGTTGA<br>TCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTGAGGACTTGCTTTATGAATCTG<br>GGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGA<br>TCTTTGTTGGTTTAAAGTCTGTTTTGTCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCTTTTAT<br>TTTGAGCCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCTAACTTGCCAGAGTGAACAGGCAA<br>CCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAA<br>ACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACT<br>GGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGA<br>GGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAAC<br>TAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATGAAGACACATGCACACGTATGTTTATTGC<br>GGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTAT<br>GCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAAC<br>ACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAG<br>GGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGC<br>ACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAA</font><font color="green"><u>AAAAAAATTATTATGTTTT</u></font>aatttttcatggctgtgtccctctgccccagta<br>gaatgtatatcttatcactctgtgcggtcctcggcacaaagtgtcagttgcttaccatagctaaactggatggggaaatattactatgaccaggagaggg<br>acacagaagaacacagacttatctttctcaaaatagagaaagagaaaaaaaaaagaatcatgttaatcgcttgaaggacttacacaaaatttggcatgct<br>taatttaacaatatcaataaacatgaaaacaacagttacatctatgtgtatggtatgtgtcagatactgtttaaagatgccttcacactgcttggacact<br>aagaagcaaacccatcttaacatgatttcactctttcatagcctttgt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr16	83670858	83676912	2000043	0	+	Druze47; RIP_L1_chr16_082_01	AGAACTTGATATATACGAAG	TACAGTTTGAACTCAACAGC	LINE	L1	L1HS	ctgaactaatctacattcccaccagcagcatatatgtgttcccttttctcctagttctaccaacatctgtaattttttgacttttgaacaaaagccattc<br>caactggtgtgagatggtaactcattatggttttgatttgcatttctctgctgattagtgatgatgagcattttttcatttgtgaattggccattcatat<br>gtcttctcttgagacatgtctgttcatgtcctttgccctctttttaatggttatttgtagaaaaccattttaaatacagtttgaactcaacagcttttta<br>tcccctctaaaattatttttctgattaaaacataactcatttccattgtaaacaacattaaaatatcaaaaacgtctaatag<font color="green"><u>AAAAATTTAACAGATCTC<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGCTCCCAGCGTGAGCTACGCAGAAGACGGTGATTTCTGCATT<br>TCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCA<br>TTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAA<br>TATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCT<br>AGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAA<br>GCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGT<br>AACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCT<br>CAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGATACCTCACACGGCAGGGTATTCCAACAGAC<br>CTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAA<br>GTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCAC<br>CAGCAACAGAACAAAGCTGGTTGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAC<br>CAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAA<br>ACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAA<br>TGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGAT<br>TGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAAC<br>GTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGG<br>AAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAG<br>AAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATA<br>AAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACC<br>GGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAAT<br>GACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAA<br>GACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAA<br>AACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAA<br>GGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGA<br>GACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAAT<br>TGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTA<br>TTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAA<br>CTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGG<br>CAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGC<br>ACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCT<br>AGCAGAAAGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTG<br>AAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCAC<br>CACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGAC<br>ACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCA<br>AAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAA<br>AGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCC<br>TTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCC<br>CTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGC<br>AGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTAT<br>GACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTAT<br>TCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGC<br>AGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAAT<br>GTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAAT<br>ACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAA<br>CATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATG<br>ACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTG<br>GAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAG<br>AACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAA<br>TGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAA<br>ACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGC<br>AATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACA<br>ACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACC<br>CCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCAT<br>CAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCCGGAGAGGATGC<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTACTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAA<br>TACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCA<br>TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTATAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAGAAAAA</font><font color="green"><u>AAAAATTTAACAGATCTC</u></font>tccacacacctgagagaggactatgtt<br>ctttcccttcgtatatatcaagttctacttttttatttacaaacgtgtgatcacactctcttcagtatattgccatctgtctcacgatttgtatcttttt<br>ccttgtctgtaaaaagggagaactattaataatactctatttctttagtctttggtgaggatcaaatgataaaacacatgcagagagtttaacccagcac<br>ctgctacatagtaatgtctttgttgatgttatttttattgttcccccttcagcttatgctacctgctttgggtgatcttggcctttcttggtggcaataa<br>agggcagagaaactccataatgtttagtaatccaagtcagtttgcagaagcagtc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/45	NA	NA	NA	intron:CDH13:NM:001257:8/14	
0	chr9	69054139	69054140	2000044	0	+	Druze48; RIP_L1_chr9_067_01	CATCTCTGATTATATGTGAA	GACTTATGTCTAACCTTTGC	LINE	L1	L1HS	ggaataaagctagaaataaacaacaggaggaaattcagaaattgtgcaaatacatacaaattaaacaacatatccttaaacaaccaatgggtcaatgaaa<br>aaaaatttaattttaaaaatgtcttaagacaaataaaaatgaaatcagaacatatgaaaacttatgaaatacagcaaaacagtccttagaggaaagttta<br>tagcaatgcatttctacatcaataaggaagaaagttaatgaataaatcatctaacaatgtatttcaaggaagtataaaatcaagaacaaactaagaccca<br>aattagcgaaagaatataaagatcagagcacaaatatacataatgaagataaaaaatacaaacgactaattaaatgaaggaatctttttt<font color="green"><u>GAAAAGGTAA<br></u></font><font color="red">TGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATC<br>CAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGCCAAAG<br>ATCAGATAGTTGTAGATATGTGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTA<br>CTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTT<br>CCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATG<br>GCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCT<br>CCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTC<br>TGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTT<br>TCGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCT<br>TCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGC<br>TTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGA<br>GTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGA<br>TTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCG<br>GTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATC<br>AGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACC<br>TCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAGCTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCTATT<br>CAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTAACCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGT<br>TTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGCTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTT<br>TCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTAT<br>TTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAA<br>AACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAAC<br>AGGCAACCTACAAAATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAA<br>AAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATC<br>ATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGC<br>TGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTT<br>TATTGCGGCACTATTCACAATAGCAGAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGAATAGCATTGGGAGATATACCTAATGGTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGGTACCCTAAAACTTAGGGTATGTTTCCCCAAAAAAAAAAAAGAATAAGAATAAAGAATCTCATTGCCCCCATAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAAGGTAA</u></font>acgacaaatgttttgtcagactaagaaaaaaagagaaaattcacatataatcagagatgaaaaaggatatactatgatagactct<br>agagaaatataaggaaccatgagtaagtactacaaacaattatatgccaataaattgaaaaacttagaagaaatacgtacgctcgtggacacatataccc<br>tatcaaaattgaagaaagaagaaatagaaaatgtgaacacaccaatgacaactaatgagattgaaggagcgatttaggctctcagtcaaggaaaatccaa<br>aagacttcacacagtagctcacacctgtaatctcacagtttaggagcccaaggcaggagaatcaccagaggccaggagttcaagattagcctgggcaaca<br>caatg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr18	69617272	69617273	2000045	0	-	Druze49; RIP_L1_chr18_067_01	ACATTTGCTTCTCAGTTTCC	ATCAGATCCTACAGCAGAAA	LINE	L1	Ta-1	actggcattgtaataagcctggggatgcagtggcccctggacagtggctctaccagtagtgcactaaacaggctttaagaaaaaagctgtagctggagga<br>gtgaccctttccaccatgtctccgcagagctacatgctctgacttttatctcataatgtttttctggttttatacatttgcttctcagtttccattattg<br>ggctgattttcttcaccctgttctgtctgtcatcccatgggagtgcttttcaattccgtttattcagcaaatctgtttacagtacatttaaacactctct<br>catgttggacacttggaaaaaaaatcatcctgttttatgttaccacagtgcttgtgattcttctctgagttataaaaccaatctttgcaaaaaatgtgtt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaaatttaaacacaaagtgggtcacctctaaaactatagaatactgcttcaaaaataaaatgcatttaataaactcattt<br>aagtactactctggcagtcaacttgttaatatggcaaatatagagatggaaatcagacgatgccaatactggcattgtaataagcccagggatgcagtgg<br>cccctggacagtttgataagcactttctgctgtaggatctgatgccatgggaggattggacaaagagacacattaagaaacagtaaaataaatgctagga<br>ttgtacatcagctgatatttttatgtttcctaaaaaatctcttgtctgattcctcctaatcaaagagtcttttatatttatatcctcctttagaaatagg<br>aagggattaggcatcacttc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr3	186372107	186372108	2000046	0	-	Druze50; RIP_L1_chr3_187_01	CAGCTAAGGCTCCTAATG	ATGGCTCTTTGAACTCAATG	LINE	L1	Ta-1	tgaagagcaagcaaagtcagcattgccagatgcttgaaagtgtaagtaaaagtgaacagaaattttttttttaatttaaaataaaagattgttagggaac<br>accaagtcagtgggttatgggaaaagagatagattcacattactgtgacctaaggaatgaagaggtggtggggaagtggcaagcatgggaacaatctagt<br>ttttcacgaattaagccatggaaagacaaaggaggtggtagatagaaggagaaacaaagtctgaggcccttccccatccttttaccagtagagaagggcc<br>ttatagaacaccccttgggaaaccccagctaaggctcctaatggtttctctctgtttgcctcaggcccatcctttgattttctctgcctggtcttgtctc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ccaggctggctccagggaattgaataacccaggctctccctgctggctagtttaccattgagttcaaagagccattggga<br>ggaggagattggaaggaaacaggaagggagggagaggggagggtgcttattccctgctccttctcgttccagcaccgggttctgcaggggctgcatccct<br>ccaccagggcggcttctgcagggcggcttctccacaggatagttccaacagagcggggaagctagccactcctgctcctgctcagcctcgggtggcaaag<br>gctgtccaggtgcctcagcatcccttggccttcccttagcctgggcaacaagccttcactaaaggtcccttcactgaagtctttttctttttttgagatg<br>gcgtctagctctgttaccca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr13	48856436	48856437	2000047	0	+	Druze52; RIP_L1_chr13_047_01	CCTGTCATATAACTCCTTGA	TTATCAGTGTTCTTTCCTGG	LINE	L1	Ta-1	agaaggattttatttctcttatctgctccatctcttcttagtttaaatcccattgaacctccaacttagataatattagattcacccttcctttattgaa<br>acatatagtgcacgaataatcctaaattgttgggttgaattggaaatggatgggaggcaagagatgtcacagcattttcctttcctggcagtaaagtttt<br>atcagtgttctttcctggtggcgtggctagaaatggcaaccaagaaagtgactcagtttacccctgattttcagtttgtactgggggcagtgagtgggag<br>tcccacctctatctgcacttaatgctgtttgacttgggcagcactttccatacttgccacctccccatgtcctccaaacctcccaacaatctgatagaaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tcatctgttctccatcattttcaccaggaagctaggacagtggctcaaagtgtaaactgaaggtccctgagattccctga<br>gatccttacagggagccattgaggtcagaactatttcttgatgagttaagatattatttccgtttttcatttttattatctcaagtatgcaatggagttt<br>ttcaaggagttatatgacaggtgatattgcaactcattgaatgcagaagacataagaatccagctgtcttccacttagagattttctaaaataagatgtg<br>actctcactaaatgtttttattttggaacgaattcataaaactatgtcatttttgctaacatgtaatgggcttactattgttattttaattaaattgata<br>aatatatatttaaaatgttc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	175731731	175731732	2000048	0	-	Druze53; RIP_L1_chr4_176_01	ACAGGGATTTAGAATGTAAC	AGAACAAATTCTCAAGGCAA	LINE	L1	Ta-1	agaaaagaaagactatcccttcccagaaggaagctaggagcaacaatacctatgagaaacattttatagcttgagatttattttaagaaatcaactgcta<br>tttcacggatttgacaaaggaaagtaatattgacaaactatttccctgaaatgctgctacagggatttagaatgtaactggcatttttttaaagcttgtg<br>tatgaagctgctactgtggtaattgatatataaccacaaacttgcatttataattttgactctaatcattatagccatttaattaaaatggatttcaaag<br>tctttatgtggatttaatttcacttacaattacttaggtaatacataattatgtcttcaatataaaaatccaaatattttggataaatgaaaagtttccc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttggttgccaacactgtcttagttcccttcttggagataatgactgaaatcatttaatatgtttctttccagattatatt<br>ttatatatttctacaaatatatgtgaccacaaataaatacatatgtatataatatatatatatttaagaaaaatgttccaattaggggattaatactact<br>tatccattccatgtgtttcctttactttgaaggggagagagttgccttgagaatttgttcttgcctctccccaccgctaatccattctgccacagaatag<br>agaagtgaatattctgttgaggaggtttctagtccagcatcttttgtttcctttcctctcacttctgattgtcctttgctctgttcttctctaactgctc<br>ctttcttccaaaatagcatg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:GLRA3:NM:006529:1/10	
0	chr5	34147947	34153969	2000049	0	+	Druze54; RIP_L1_chr5_034_01	CTCTCATTGGTATTAGATAG	CTAAACTAAAAGTTGAAATTAA	LINE	L1	L1HS	gaaaatgtggtataaatacattatggagtactacagagccatagaaaaaagaacgaaatcaggtcctttgcagaaacatggttgcagctggtggtcataa<br>tactaagcaaattagtgcaggaacacaaaaccaaatatggcatgtcctcacttataagtgggaaataaatactgagcacacatgggcataaacatgggaa<br>aaagagacactgtggactactagatggggtagaaaaaaagagtggtgtgaattgaaaaactacttatcatgtactatgcttactacctgggtgatgtgat<br>gcataccccaaacctcagcatcacacaacagattcgtgtaacagacttgtatatgtaccctcatatctaaactaaaagttgaaatt<font color="green"><u>AAAAACAAAAACAA<br></u></font><font color="red">GGGCGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCATGCGCGAGCCGAAGCAGGGCAAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTTGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGTGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGAGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATGAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTAACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACGAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>AAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGGAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTGCAAAACACCAAAAGCAATGGCAACAAAAGCC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACAATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAACAA</u></font>aagcaaaacaaagcaaactaactaggtgagattatagatgtgttaactgacttgattgttgtt<br>atcatttcacataatatacacataccaaataattagatagtatagattaatcacataatttttgaattatactttattaaacctgcaaaataaaaaaaaa<br>aaatgtcatttggtataaataatgcaaggtctatctatctaataccaatgagagttgtttcctattaagtatagagtttttgtgaattattatggaattt<br>ttcctgcatttattgtgaagtagtagtaatcatcggaaattgaaatttgttaatatttttacttttgaacatattttggaaatggaaagtataacgagtt<br>tttttcttcttataattaatcgc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	42/48	NA	NA	NA	intergenic	
0	chr1	218245639	218246489	2000050	0	+	Druze56; RIP_L1_chr1_214_01	CATCAATGTAACCATTCATC	TATAGAAAGCTTACCATGGC	LINE	L1	L1HS	gcctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacccagctactctggaagctgaggcaggagaattgcttgaacccagtgagcc<br>gagatcataccattgcactccagcctgggcaagaagagggaaactgtctcaaaaaaaaaaaaaaagaaagaaagaaagaaagaaaagaaaaaaaacatga<br>atgactagggaactctatcatatccttacctgagttacttctttgcactctacttaaggtcaaaacaatgatatagaggaaagaggaacaacaaggcaat<br>ccataattcctttttttagtttagtgcttcttttcctatcaccactaagccaaagataggatagaaaatgataatagaacatatttgtat<font color="green"><u>AAAAAAAGAA<br></u></font><font color="red">CAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAGACATGAAGAAATGCTCATCATCA<br>CTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGA<br>GAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGA<br>ACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATT<br>GCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACT<br>ATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAA<br>ACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGG<br>AGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCT<br>GCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGAA</u></font>ataaaaacatttgagtttgttttgacagtttccactgtt<br>ccagtaagaagaaaagacatgaatgtttgagctgtgaaatataaaatatgtaattttgatgagtctgcatataattaaatgcttttgtattcaaatttaa<br>agttggtattgcacaacataaggatgaatggttacattgatgctgataattaaaaattttcatttttctttacttagaatgacatttaatagcaaataaa<br>tagcatcacaacaagtcaagagagagaccatggaagacaagaagaagtttgatgttttagtgccttcaacatcactgttttctctgctttgtgaaaaggg<br>agccctgcatttttattttgcactgagccctgcaaattgtataactaaccc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr12	33325658	33325659	2000051	0	+	Druze57; RIP_L1_chr12_033_01	ATAGAGCAGTACTCATGAGA	TGCAACCACAATCTACTAGA	LINE	L1	Ta-1	aagaagctctttttacccgggaaaaaagatgttatagagatagagcagtactcatgagactttgagcaaatgatgtatgagtcttacccactcttattca<br>tagtctaggacagaaaatacaaaatagtctaagaaaatgtaatgagatttatatttgaaattgcctctttcattagaactaaggtgtgttgatgctagtg<br>ttttcttgatctttatagaacttatcagtggaagaatttaaaaaaattgtttcatgaatgttacatagttaacagcaattgtactaatgccattgattcc<br>aaaatgtattccaaattcaaaaagataaaataggaaaaaacaacataaatcttagaattggtgaagtatataggtgatttgaatgttattggaagggcta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aaataattaggttctcagttgggtctctaagaaaatttgcaggacgatatactgctagtccactgagaatgcttctacct<br>ccgatatcacacttaagagttatgcttagaagtaggaagctactgtcaccactatacttgcttttcatacttagaaaactagaaaatgaacactgaaatt<br>ctgttcaaggaagatgcacagttccaaacttttttggtcaagaaacaccagctaatagtcatagaagataacatctgccttatgtttatttttccagtct<br>cacaagagttcatctaattggtggaacctaatttgcatcaagaacccttgcttcaagggagtctagtagattgtggttgcAGCTTCTAACCTTTTTAATT<br>ATAAGTATAGAATGGGGATT	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr4	137214654	137220701	2000052	0	-	AC018680;Druze58; RIP_L1_chr4_137_01	TACCTAATACATCTTCTGCC	AAGTCAGTTGCAACAATGG	LINE	L1	L1HS	tggaacttgcagcaatctcacttgtgtatactaaaataggagaaaaatcttatgaaactacaggaaggtttttgcttagctttctctcaaaatgacagaa<br>taagttgttgatgctttttgtctctgcctgcctctgagttatgaaaatagcattttcaatttcgcacattatctcttcagctatcacgaacaatgcggtc<br>cattttcctcaagttccttgtcatcagcaacacctggaagcaagttgaaatttagattgttttgctttgttttatttatgtttacttagaatgttacact<br>tttccgacaaagaattctttaaaatctaagatcacattcaaataggtaagctatttctacttcttttaaagttaagtataacatc<font color="green"><u>AAAATTAATAGAACA<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACAGCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAA</font><font color="green"><u>AAAATTAATAGAACA</u></font>acaggtggtttgtgcctcatcaccatagaaaaagtga<br>aatattagctgtgcatacattacaaaataaatctaataataattaatctaaggcaaaatgaatgatggcagaagatgtattaggtaaaatagttttagaa<br>aatgtgtaaaatgaaaaaggaatacctttaaatgtttgaaattcagaagtattaggtcagattctcccaagctgtattctctaaattgctttagatttta<br>tactttagtctttctcccagccttcctgaaaggggacccagtagacatttacctatgttgattttgcattagagaaagggaaataggctgggcatgatgg<br>ctcattcctgtaatcccagcactttgggaagctgaggcaggtgaatca	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	50/48	NA	NA	NA	intergenic	
0	chr12	43256986	43256987	2000053	0	-	Druze60;AF417153;1104685300946; RIP_L1_chr12_041_01	TTTATCCTCAAATACTTGTC;TTTGATGCTTATTGGCAAACC	ATAAGTGACATAATACAGGC;TTTCACCTCTCACACTGAAAAA	LINE	L1	Ta-1	atatgctttctttcctaatgttcttggaatgtttaccaaaacatgtaaaataaaatgctataaagaaaacttcaaaacttccaataagtgacataataca<br>ggcttcattacgtgactctatttttaaaaaagtttaaacattaattatacaattagcaattttaaaatataaataacttgagttgaaagaaaatcaaaat<br>tcttagtataagctatttagaaaatagcagtgggaactatccatcaaaacggatggcaaaagctgccctcagagaaaaatttatagctttagggagttta<br>ttaataaagaataaatgaaaataagcaaaatattcaactcaaaactctaagaaaattaaattagacatctaatatttcacctctcacactgaaaaatatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACTATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaaa<br>agaattaaaatacttattactgacaagtatttgaggataaaaatactattgagaattctataaataggtacaaatctcctgaggtttgccaataagcatc<br>aaaatccctagcacttctatttctacaagtttattctaatgatagatttgctcaaagatacatatagctttgttttgttttgagacagagtctcactcta<br>tcaccaacgctggagtgcagtggcatgatcactgctcactgcaacctcaacctccctggagggctcaggtgatcctcccacttcagacttccaagtagct<br>ggaactacaggtgcacgccaccacacccagctaatttttgtattttttgtagagacagggttttgccatgttgcccaggctggtctcaaaactcct	Other;Venter	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	 TSD unavailable;NA	48/48;55	NA;1292	NA;133	NA;NA	intergenic	
0	chr11	58171750	58171751	2000054	0	+	Druze61; RIP_L1_chr11_057_01	TCAAGATTTCAAAGCTCACC	TGTCTCCTTTGGTACAAACT	LINE	L1	Ta-1	gcacaggaggttgagtaacatattcatatttatacaagtattaaatggcaagccatgctttggacccataccaacttttgaacccatgctgaatggttcc<br>taaatctaatggtctaaactgaatttaaatcaaattgaatacaactgtatttacaatcactcattgtctcctttggtacaaactcagtgttttgagtttc<br>acaatgaagtaagcaagtaatatatgcttagtaaatgggctggggtaacagggttgtttggggcatgttcaactaccagaaacaattctgagagaagcct<br>atcaccaaacagagcagatacagagcttgagttcttgaaagagttgcgtatcagtccacgacttaccacctgggaatcactggttctaatctaattccct<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>taaacatcacattttcttctgtaacactaaaacagtaatgtgacctactttgaggtattattgtgagaattaaataagat<br>aatccattaaaaatgctagatgttaagcacagcctaatgagtgctagttataatattaaatattattattagataggtgataatctttttgttggtttga<br>taaaggtggatggtgacaagcagggctgcaggcatgggtgagctttgaaatcttgaagctcccacctccaattttcttttcctccatgctaggaccactg<br>agattttctgtgttcttcagtgattttcaggttgttcttcctccaagcaaatgattgtctgctccggaagattcacatgagcctttctttttcttaattt<br>ctcccttgaaatccacattt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	promoter:OR5B3:NM:001005469	
0	chr6	63367783	63367784	2000055	0	+	Druze64; RIP_L1_chr6_063_01	TGCATACTTTTAGGCTAGAA	GTGTCTAGACTTTAGCATTC	LINE	L1	Ta-1	accaatcaaattttttcctaaataaataatgtgtgtattgctgctttgcaaaactaatgcaccttctgaattatgaaatatataattttactgagagaaa<br>aatgaatagctgataacactgctaaggtttattgactgattttcatgtgccaagatgcactttgctaagcactttacatgaattataatatcttgggtag<br>ttctctcaaaaacttttacaaaataggtattgatattatttataattacattttaagaatttgaagcaccagaggagttaagtaacttgtcagaagtcat<br>aaagctggaaaagtcttgggtgataaataaaacccaggtctgagatttcaaaaatctaggttccagaacaacactgctcctcagtgatattttagtcaca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atttaagcatacatctttaaatgctaaagtttaggggtcagcaaactggcctatgcttcaaatacagcctgttgcttgtt<br>ttggaagttaacacttcatggaaacacagttccacctattggtttacatgtgcctaaggttgtttcattacaacatagttgagtaattgtacctgagacc<br>acatggctcacaaagcctaaatattcactatttgatcctttacaagaacagtttgctgatctgtgctttagacttttaatttgaaatttgaaatccatgt<br>catgttctcagatatttactacactttctgtttctatcaatttggaaatatttaatatggttggagtaataattacatatttaacaaatacatcaaaatt<br>atttgatagaagcctaagtc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	108787075	108787076	2000056	0	+	Druze65; RIP_L1_chr6_108_01	CCCTAGAGTCATAGAGTCA	TGACTTCAATATAAGTTGCC	LINE	L1	Ta-1	gctgaccttaggtcttatgtcccaaataccagatttttaaaaatgagataatcctggtccttctttagagcctcacaagcatggatatatttctgaatag<br>agatttttagtgtaaggcaatgttactatctttttaaatggtttcactacagaactaacaagagggccctagagtcatagagtcactgctgctgctgctg<br>ctgctgctgctaaagtttttacaataaagttgtgttcttaaattttcctactttaaaaagtgaagatatcttgaagcacgggttttaaaattttatgtgt<br>atcatgacaattgagaaaatgtttctagattaactattttgtttatttttaatttttaattagttcttttaatttaatttaacttttttaaagagttatg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tttaacactttaaaacatagtgacacttttttaaagtgtcactatgttgcccaggctggcctcaaactcctgggctcaag<br>tgatcctcttgactcagcctccctagtagctgagactataggcatgagtcactacactatggattaagtcttttgttaaattaaattacatttgtgtttt<br>tatgcccaatccttgttaaaaaataaacttgaggcaacttatattgaagtcatttataatttatccaccataatcactaaaatggaagagatggaaaatg<br>ccaagtattggcaaggatgtggagaaaatggaactcttttttgtatcactggtgggagtataaattgctacaaccaattggaaaactggcaacatctcct<br>acactgaacataggtatacc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:LACE1:NM:145315:8/13	
0	chr3	89509980	89516006	2000057	0	-	L1HS508;Druze66; RIP_L1_chr3_089_01;AC213268	GAATCGAATATGCCGAATAC;NA	TTTGAAGTTATAGCCGTTAC;NA	LINE	L1	L1HS	agaatagtaatatattttttccgtacattttataactgttttttaaaatttcaaatgtttccccaatgtatttcagggggaaaatcttatatttgccaat<br>ttattttaatgttgattgccgatgaccttgatctttatcactaaaattaaaaatccagatacgataaaatgaatttaatttttcatcagtaactaaaaat<br>aattttgaatatatacagttcccaacaggaacctagtacataaatgacacattaaggagaaataaagtcattgtgtttattttaattatctctaggcctt<br>aaggacaaaaatctttgaagttatagccgttacacctggtttaattcctccgtgtggtaaaattagctgttttgattttaagatt<font color="green"><u>AAAAAAGAGAGACAG<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCATAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACAAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAATAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTCCAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCTTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCTCAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAATAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAA</font><font color="green"><u>AAAAAAGAGAGACAG</u></font>agagatcacttgggtattcggcatattcgattccctctaaaaggttctgtatcatatt<br>tattcactgagcaaagtcaccctgtcagtttcagaatttgaggtcaaagtcattttgagaaataaaggcagattgtcttttggttgttcgatttgtcttg<br>aaggatatggtatttgtcaaaacagcagttattctcaaaaagaattctattatgtactcttagagatcagaagctttttactaatacttgtttattttca<br>ttaactggggaaaatatgagtattgtttatttttactcctttctatgctgcaagttaataaaaataaatcccttcaaagttagtgatcaatgcaatgaaa<br>caatatatttaaaaacatttcaattaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	58;NA	6144;NA	103;NA	NA;NA	intron:EPHA3:NM:005233:15/17;intron:EPHA3:NM:005233:15/17	
0	chr6	148195589	148195590	2000058	0	+	Druze67; RIP_L1_chr6_148_01	TGCTGTGAGTTCTGATTATG	TTATGGCTTCACAGTTTAGG	LINE	L1	Ta-1	gtctcagctactgtctgcttttagtgaacatgatactatgcttacttaattgctcaaaaaactttaggcaatgctaagcaagaatagaaggctttttcct<br>agggtggggaaacaggctgattggctttacttccttaattatggcttcacagtttaggcattacagaaatattacatatctgactcttaaggtctttacc<br>catttcatattagatcttagatttcttcatcccattattgatctaaaatgtctctagctctctcgggtaaaggaagaacatgcccatgtgttgcattagg<br>taattcctattattgaaaagctgtgttcaatctaaaatgaccttttcttggattttttgtcaagctagctttgcaacccatattaaattgaagcttttgt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atgaggaccgagaagcccgttgttgcgtgggcaatgacattcttagggtgtttgctcaggacagccggccctccggccag<br>ctggtggcaggagctggagcatttggccgagtagtcattgctgctttttttaagtccacagcaaagacagggcattgggtctgaatttggactataaaga<br>aggatggacaagtgctatgcaaagaaaaagttcatctgtgaagaggatctctgtgctttcataatcagaactcacagcatcagtacttttgaagatgtcg<br>aacaagaattttgggaggggcagcatggagatttggacttttcacaaaaataaatttgataatcagcattggttttactttaattttagtggtcctttat<br>gattgtacatgtttatagtg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr13	61462441	61462442	2000059	0	-	Druze69; RIP_L1_chr13_060_01	ACTACTTGGAAAGTTAGTTC	CACTAGTGTTTCCTAGAATG	LINE	L1	Ta-1	ttattttagcaacgtaaatgtcatacacactgggatttaacacagagcactttaaattccttgatacaacagctgttatcctcatttttagctgaagctc<br>aggtaaattaaatgcttattatataaggattcaaggaaagggatacgactttttaaaaatcttcatgtctaaatttaaatacttaaatattaagagaatt<br>tgagtttctttcttagttcatcatttcatgtctaattctcactagtgtttcctagaatgtaaaaattcagcatgttggggaccacaactaaattttccag<br>ataccccagaaataaatggccagagtgatctttgaaaatcgaaaaatgtggcagcaaccatcatcttctgcatttctcctttctgagatttcatagaacc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ccaaagagaacaataaaataagcttaaaacttcctctcactccactttaaatctaatattttatctaatgctggaacagt<br>gtcacacaggttatataaaaaagagaagaaagctattccaccattgtagagcactctagaactaactttccaagtagtaaatatccaggtcttagactat<br>taattattgcaaagaaaagaagaaactcattcattaaactttctatggttatcaacttaaatcaaccacatgccaaacgtcgtgctaagaactagacatt<br>tctgtgctttctactcaaggaatccaatgtagtaaaagaaacaggtgtgaacaaataatgtgatgtagtgtgatgagtgttatgacattggcctgcaaag<br>gaaaccaagaaattgtgtaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	59622385	59622386	2000060	0	+	Druze70; RIP_L1_chr4_059_01	GCCTGTCATAAAGTTGTCAT	GCTGGTTAAGTCATATAAAC	LINE	L1	Ta-1	tacaatcgtataatacctgccttgtgcctgcaatgcataccaataataaatcacattttgtggtaaaattactgtcaaaacttcatagaataatggtcat<br>tatgtcaaaaaaatagactaagcaataaatttctacacaattgtgataatacttaatcaggtgaaaatacacatacatatatgtatttatacatatacac<br>ataaatgtatatatacccatatatatatgcacaaacacacacaaaagctggttaagtcatataaacatgagaataaaaaaatacagagaaaatatagaaa<br>caaacatagaaatatgtaaaagacatcaacagtcaatttataaaaatgcaaaatgatgaataaacaaatatattttattattactaataaataataaatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tcagaagctagacttattttggctaataagattagcaatatttaaaatgtatttttagaaaatacagatgacagtgtcac<br>tttgtagacaatttttgtataataacagggatatatactagcacaattttttgatgacaactttgtgacaggcctgcaaatgtgatatatggatgtcttt<br>agacccagaattttacttctgagaatgtgacttaaggaaaaaattaggtaaatgtacaaagatggattgcaaggatgttcatcatgatgttggacaaata<br>gccccatgttgtcttttgaaaaggagtaaattatgtcaaattacatagtgaaatattaaaagaatattgaaataatgatacccagtcagtcctataacac<br>acatttataacatttactaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr5	108595090	108601121	2000061	0	+	L1HS158;Druze71;238563; RIP_L1_chr5_108_01;AC216137	GCTGCTTAGATATCTGATTG;NA	ACAGCGTGAAGTTCCTTATT;NA	LINE	L1	L1HS	ctgttagaggatggtcacagagttcttggaaaaaaacctcactgaatggaaagccaaaggaaactcaaaaggcttgttgatcttgacgtaagcacatgac<br>tgattcccttaggagtctcccagaaataactagaggagtgagaaggaagagggatcatgcccatgtgtgaaggtgaagccacggcctatgaaatgtgagt<br>ttttgttaatatgacctaagctgagactgggcaacctagagagctggggtcccattctcctgaaatcctcgagccatgagcagtggaggcttacataaga<br>gcatctgccagaacgtcagccagcccagagtagttcatgtttttgtaatttgagttttaattccacaagtaaaatatttctcttt<font color="green"><u>AAGAAATAAGAATGG<br></u></font><font color="red">AGGGAGGAGCCAAAATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAAAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAAGTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCCCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCACTGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGACCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAAGAATGG</u></font>tgtctcattttatttttgagtagtgactttccaaacaatcagatatctaagca<br>gctccttttccttcttcctccaggctgtccaccatcgcctttcccttagcttccatctttccttgtgacatgaggaattgctgaggatttagatcactac<br>aaactcagcacttcaactttcctcaggggacaatttggcaggttgagccctttttgacccatttttagccattgatttctgatgcatcctttcttcttgt<br>cataactggggaaatgtcaggacctttgttttgaaatctaaatggcactatctttcaaggttgataatatcttcaaggtggaattgggaacattgcgtgc<br>ttgccttaattgtacccagactcccaggttgg	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	59;NA	6194;NA	147;NA	NA;NA	intergenic;intergenic	
0	chr11	78388822	78394847	2000062	0	-	Druze72; RIP_L1_chr11_078_01	AAACATTCTAACTTAGATTC	AGCACAAATCCAGAGATAGT	LINE	L1	L1HS	aatctctgtgccatagtgcctctcacagcacgcactcaaatattggagaatttgttcattaacggagcagtgactcccacacccctcagctgcaagacca<br>ctgaggaggcccatagaaaggctgaggggtgtacaggacagggagtcatacattctggccagtggaacaggggaagcttctggaaagagatgacatttta<br>gcagagcctggagggagtcttaagccagcacttactgaagacgggggcagtgcagaggaaacagccaaggaagggccagagacaggagagtgcagcacaa<br>atccagagatagtattttcatctatagaaagaaactctatgtgtattttacagctgaaatttgcttttttcaccgtaagtttcatttagtt<font color="green"><u>AAGAATCTA<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATAGCCCAGGCTCGCTTAGGTAAACAAAGCAGCCGCGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACGTCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGGTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCGCCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAATCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGTAGAAAAGGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAGCAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAA</font><font color="green"><u>AAGAATCTA</u></font>agttagaatgttttaaatcaaatttaaaatttcaaatcatatgtatatttaaatcattgtcatat<br>gcctgtgacaatgatttaaaatatgtttatatttatgtatttttttttgtcattctgtcagtggtttaagtgtcaaagttatttttcaccttgttataaa<br>aaacattgttaccttagagtgtatcaagagccttaaaaatgttcaacctgccaggtatggtggctcacacttgtaatcccattgcttttggaggctaagg<br>tggaaggattgcttgagcccaggagttcaagacctgcctggtcaaatattgaaacctggtctctacaaaatatttcaaaaattagccgggtgtggtgatg<br>catgcctatagtcctagctacttggg	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:ODZ4:NM:001098816:29/34	
0	chr12	84955305	84955306	2000063	0	-	Druze73; RIP_L1_chr12_083_01	CATCTCCATATGTTAACAGA	AAACCTTGTAGAAGCATGAG	LINE	L1	Ta-1	cttcagtttgatctcgaggctaatatttaaacagactgaatgattaagagatgctcagcatcaagaatattaatttcctcaaactttggatattattgat<br>ctgtttaaatgttgactttccgttaaatatttctttcaaaatgtcttcaaaatacctttcctttattttgtgaaattacagatgttctaacatattccac<br>tttatttattctttcgctaaaccttgtagaagcatgagctatagcttataaaattattaatttccatggtaagtagaatgaaggtagaatttaattttaa<br>tgaagcctagtgtaacaaacattccactccagtgaaatcttacaaagtaccagctggaaaacagctgtgtcccatgctctttgactgttgtgaaatctta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctacaaccaaataaaacagatgcatccttgaaagttttgatgaactttgtaaatcttcagatcaggtctttcatacttta<br>tattagttaaaaggcaaaaaagtttcattctatttggaagttcattagcttctctttgaggctctgccaagaattcagttctctgttaacatatggagat<br>gataccacatttgcctgtttgggtactagtgtcattccttcaatgtagataaccaaatacatcagcactgtttacatcaaaacacactctttattaaaat<br>gtataagcacaaatatataatcatacatcataaagaagcacaaattcagaaactaatgctttagttaatggaggttcctctttgttaaaaattcagatga<br>gtaattcaacagcctcaaaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	32589512	32589513	2000064	0	+	Druze74; RIP_L1_chr6_032_01	TGGTAATTGGAGTTACCATC	GCAGTTCTGCAGTCATATTT	LINE	L1	Ta-1	agaatcacttaatagactgcagcagatctcccttgaccaaccccccgaaaccagtcaaattcttcattttccccaaagtgaggactcccacattaagaag<br>ccctcagtactgagataactagcagatacatttttccattgcaagggtggtcttgatgcagggccagcaaacctcaaaattggggctttgcccaagagtg<br>ttcttggcttcactagggaaagattccaaggatgagacagtggtgttagacagcaaattttatggaactaagctactccttgaagagcagggttacccca<br>tagacagtgtgcccagaatagtagctcagaggcagttctgcagtcatatttatacccacttttaattatatacaaattaagaggtggactatgcagaagt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttctagaaatagggtagaaatttctgcataatccaccccttaatttatagatggtaactccaattaccacttcaatgacc<br>ccagtgggtcattattgccatggaaagaagtggtaacctctgggtgttgccatggcaatggtaaactgacatggcaaactggtaggcatgtcttatggag<br>aggtgcttctgccccatccctgttttagttaatttgatctggtgtctgagccccacctactacttcagtcttgtgacccccagattccccagttgataag<br>aagatgcgtgagtaaaggaggaaattgagagatgcttcctttcagtgtccaagtgtcaaaaaggattcctagtcttaattaaaatttagatataagaaat<br>ctactgaaagaaagtgatta	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/45	NA	NA	NA	intergenic	
0	chr5	151456431	151462447	2000065	0	+	L1HS446;Druze75; RIP_L1_chr5_151_01	ACAGCGTACAAGCTAAGTTA	CATCACATGTCATCTGAACA	LINE	L1	L1HS	acatccttgatgtaattctcttaacttagatagatgctattatgcctactttataggttaggaaaaagtaattcatttgtccaaagtcacacagctagta<br>aatcttggggtctggactgaaagcaattcttttccaaaaccattttctttttaaaatgtatacctaactgagttgtgggtatcacttctgtttcaggagc<br>aaggcatgagaagctctatctttgcaaataatttgctttggataaagctatttcttttgcagaagcatcacatgtcatctgaacatttaaaaaatatttt<br>ttgtgtctcttagaaattctcgtgacatttccatcatatagcctttagatagtgtggtcttcaaaattagatagtgtggtctt<font color="green"><u>CAAAATTACATGGTGGA<br></u></font><font color="red">GCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCAGGTTCATCTCACTAGGGAGTGCCAGACA<br>GTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTC<br>CGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAG<br>ACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCCAGGCGGCAACGAGGCT<br>GGGGGAGGGGCGCCCGCCATAGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCC<br>TGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGA<br>GAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAATTGGG<br>AGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTCCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACC<br>AGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAA<br>CTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCT<br>GAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAA<br>TGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGA<br>GCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAA<br>TGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGGGGAGAATGGAACCAAGTTGGAA<br>AACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCT<br>CGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCT<br>CAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAAT<br>TTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACAAGCAAATGATGAGAGATTTTGTCACCA<br>CCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCACTGCAAAATCATGCCAAAATGTAAAGACCATC<br>GAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATA<br>AATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCA<br>GAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAAC<br>AGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTAT<br>GCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCC<br>CACTGTCAACATTAGACAGATCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAG<br>AACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGC<br>AAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTA<br>CATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAATGAGAACAAAGACAC<br>CACATACCAGAATCTCTGTGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGAC<br>ACCCTAACATCACAATTAAAAGAACTAGAGAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGG<br>AAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAA<br>GAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTAC<br>AAACACCTCTACGCATATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTC<br>TGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGCTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCAAATTCTACCA<br>GAGGTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGATGCCAGCATCATT<br>CTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAATATTGATGCAAAAAATCCTCAATAAAATACTGGCA<br>AACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATG<br>TAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAA<br>AACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAGACTG<br>GAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGG<br>AGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGC<br>CCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCCTATACACCAACAACAGACAA<br>ACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGAACCTCTTCA<br>AGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAAT<br>GGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATA<br>TGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTA<br>CAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCT<br>GATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAA<br>CTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAG<br>GCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAA<br>ACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGG<br>CTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAA<br>AAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCAC<br>ACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAA<br>CTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAA<br>ATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAAC<br>AATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATG<br>AAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATG<br>GACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATT<br>AGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CAAAATTACATGGTGGA</u></font>cacttacaacccttaggtgacttaaaagaaaagctttactgagatataatttacttataaaatt<br>catccactttaagtatgaaattcaatgattattattatattacagaattgtgcaactgtcacgtaaattgaattcctttggtaacttagtttgtacgctg<br>taacggatcaattatccaagaggatgagagaagtcattgcagatataaggaacgacatgaataaaggtgtcaggatggggacatagagatcatatgaaga<br>ggagtggatagtcctatttggctgggtataaaatgagtaaaaagagaaaaataaataatactagggctgggtaataacaatgaacagatcatttccagag<br>agctggtttggtgggaaga	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	6142	109	NA	intergenic	
0	chr5	68263678	68263679	2000066	0	+	Druze76; RIP_L1_chr5_068_01	TAATGTCCCTCTGTAACATT	AGCTACTATCATTATCGTGG	LINE	L1	Ta-1	aagtgctgggattacaagcgtgagccaccatgccccgccctgtctctaattttttaaaaaaaagaatatcaaaatgccagaatgccaggtattcatctgg<br>aattgttccatttataatgattattaacattaaaaagtactcttaagtccattaaaagttcatcatctcatttaatgtccctctgtaacattgatgttat<br>tgttcccattttacagataagaaagctgaggtcacaaaaaggaaagtgactggtccaagttgaaattgatcgtaattagcagagccagaagttgaaacca<br>gttctgttttattataaatccacaccacactttggatcacacatcatcagtggcccaaactctcagctcttgcaaataaaaataaatcaacagtttttag<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgtcaagtctctgtacaacatgtgctggtccacatttcatgccttggggctagttattgccttgtattaattattatctt<br>tcatgtagactttgcctcctaagtagtaactaaattgctaactctttatagtcaaaaatatgtgttttccatctttgtgccccacacttagaagagcttt<br>ttgcacatttaggtgatttttagatcaccacgataatgatagtagctttctgcctctctagactgcccaacaatctctggacaaatcaggcctctctgcc<br>tataaagatgtgatgcaggctggctgcagtggttcatgagtataatcccagcactttgggaggccaaggcagaaggatcagttggggctaggagttcaag<br>atcagcctgggcaacatagt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr3	187835470	187835471	2000067	0	+	Druze77; RIP_L1_chr3_189_01	TTTGTGTTAAACTAAACCTG	GCAGAGTACATTCAATCCAA	LINE	L1	Ta-1	ctccacccaagaaggaacctttcaaacctgtgagggagactggagctcttggaggactggggctctacgccaaggatgctcagcctctgcgtggagagga<br>caattttcaaggcatcttccaaccctgagatttcagtgatttgtgttaaactagacctgggaagggtgtttttgtaacttatatttttttattccctaaa<br>acgttcttcagaaaaagccttatcttccttccaatatttcattagcgttcactttcctgtgtttctctgattgttgccctccaggtaaattttgtgctaa<br>atatatgtgacctggctagtgacttggttgtattttttttatttgtttgtttgttttgagacaaagtctcccagactggagtgcagtggcgtgatcttgg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctcactgcaacttccgcctcccaggttcaagcgattctcctgcctcagcctctggaatagatgggattacgggtgcatat<br>caccacgcccagctaattttgtatttttagtaaagacggggttttgccatgttggccaggctggtctcgacctcctgacctcaggtgatccgcccgcctt<br>ggcctcccaaagcgctgggatcacaggcatgagccacctcacccagctgccttggttgtatttggattgaatgtactctgcgcgtatgtctattcagtgc<br>tccaaacagggctaagtgtttaaataatcatacatagtcactcacattcttggagttttattatagccttattacgtatccatgtttaatagtttaatag<br>tttagtaattatttaataat	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	112628915	112628916	2000068	0	+	Druze78; RIP_L1_chr4_112_01	TGTAAGTTATTTTGAGTCTC	TTCAACAAAGTCTGTCATGC	LINE	L1	Ta-1	aatttagaattgttgatttttctcttaactatcctatgtcatagcatcatggtggtaaaacaccaccatcaaactaaaaatcatatacactgcttaaata<br>cttataaactagaaaatatatcataggaaaaatgtgaccactaaattgtttgttgaataacatgcctataaaaagaaaataatttagatttaagctgata<br>gttacatagagtaaaagaaatatttggatgtcctttgagattattcatttcaacaaagtctgtcatgcccaataagtaccaaatgacagtgtgggaacat<br>gtgaaactgaaactggactgttaaagaaatcttagcagaaatatggaaaatcagaatatgaaatgtacaaaccccagctaagtcatagactatcattttc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>attatctgtcacctgacagcagattatctactcctaaactgtgtttaaagtatctcataaacttaaatgatgttaagggc<br>aaatgtttatattaaagtatccataaaaagaactaaatttgtaaaaatgagactcaaaataacttacataattttaatacaaatcatttaaaattgaatt<br>ttgcttagagaagagttttctaaaaaggaataatgaaaaactgtatttatttatgttttttaattattaatttttttttttttgagacagagtccactct<br>gttgcccaggctggagtgcagtggtgcaatctcggttcactgcaacctctgcctgccaggttcaagtgattctcgtacctcagtctcctgagtggcaggg<br>actagaggtgcccaccacca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr8	5829450	5829451	2000069	0	+	Druze79; RIP_L1_chr8_005_01	CAAAATCTCTTAAAACAACC	ATTGGTCTGAAGTGATGTCA	LINE	L1	Ta-1	aagtatccagacatggtggcaggtcctgtaatcctggctacttgggaggctgaggcaggagaattgcttgaatccatgaggtggaggttgcagtgagcca<br>agattgtgccactgcactccaacctgggcgacatggagtgagactccatctcaaaaaacaaacaagaaagcaagaaagaaaacaaaagaaataacttcaa<br>aatctcttaaaacaaccttaccacctgttttctagtcttaatcttccattctgcagattggcagtactttatgtctatctgctgactgagattatagaat<br>tcctcacacatggctcctgggcgcttgctaaacttgtagttactgaaactccttttcagatttgaaggcgtccctgaacgtggacttctttggcttcatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ctccccgacctgtgttatattttacaaaaacacctcgagactggctcacccaattgcctctgtgagcgcccctaggaact<br>tgttttgaggctgaatacactccatctatgaccgctctgtttcccggcccttggccaatatagacccaatgtcctcaggttctttcccttctgcgagctg<br>ggtgacatcacttcagaccaatgccctattgtatgttagaaccaaaaagcgtttacatttccattcaagccctcatttctacacggaatttttggtagtc<br>ctcacaaactgctgtcctcctgcttttgtccatctcagtaaatggcagcagtatctaccacattgctgaggatgcaaacctagatatttccctcaattct<br>tcctttataaaaattcctac	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/50	NA	NA	NA	intergenic	
0	chr6	142450111	142450112	2000070	0	-	Druze81; RIP_L1_chr6_142_01	TTTGGTAACTTGTTGCAAAC	AAGAGTCACTACTTCCTTGA	LINE	L1	L1HS	gaggcaccaatacaagggtgtttgctcaaatttgcttgaagtttttagtttcagataaaggagggaaggcgagctcagatttactactactactattagt<br>acaaaaagttgctaacatttattaatcactactatatgccagtactattctaaaccctgggagtaatgtataatcttttggtagacattcttggtgtcct<br>aaaacttctttctgagattaaaaacatttaagaccttgtggtgtaaacaagaaacagggtaaattttgttcagaacccaaaataggatcaaaataaataa<br>aaatgagttaaagcattatgcatgatgattaacacatgcaaattaatgcataaatgttatatattattacattcacatctggtctaattt<font color="green"><u>AATAGTTTGC<br></u></font><font color="red">GAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGGGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCAT<br>CTCACTAGGGAGCGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAG<br>GGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTT<br>AAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAAC<br>TGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACC<br>ACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGACTCCACCTCTGGGGGCAGGGCACAGACAGACAAAAAGGCAGCAGTAACCTCTGCAGACTTAAATGTCC<br>CTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGAC<br>CCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGT<br>TAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACTCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGG<br>GAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATG<br>GAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACT<br>TTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGA<br>AGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGA<br>GAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGG<br>AGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAATGCAGGCCAACGTTCAGATTCAGGAAATACAGAG<br>AATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGA<br>GAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCA<br>ACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAAT<br>GCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCAT<br>GCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGGAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAA<br>CAATACTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCA<br>GGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCA<br>ATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGC<br>TAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAAT<br>AATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCA<br>GACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACACACTTG<br>GAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACACAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCT<br>CACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGACATAAAGATGTTCTTTGAA<br>ACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGC<br>AGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAA<br>AATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGA<br>CCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAA<br>CTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAA<br>CCAGGAAGAAGTTGAATCTCTGAATAGACGAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGA<br>TTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCAT<br>TTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAAT<br>CCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAAT<br>ATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAACCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTC<br>AACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCAT<br>ACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG<br>GCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAG<br>AAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGCATAAAAATCACAAGCATTCTT<br>ATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGG<br>GATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAA<br>GAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAA<br>AACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTC<br>AAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGCTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAACGC<br>CGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGC<br>CATATGTAGAAAGCTGAAACTGGATTCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAA<br>ACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGTGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTG<br>ACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAAC<br>CTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAGACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGAC<br>ATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCA<br>CTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACA<br>CTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCA<br>TTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGA<br>ACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATC<br>CTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAAT<br>TGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACC<br>TAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAG<br>AGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AATAGTTTGC</u></font>aacaagttaccaaacattcaaagaagaatgaatactgattcctcttaagctcttctgaaaaattga<br>agaggaacactgccaaactcaatttatgaagccattttcaccctgttgccagagtcagacaaaaacaccacaagaaaactacagggcaacatcccagaag<br>agtacagatgcaaaaaccctccataaaatactagcaaaccaaattcagcaacatagatagaagaataatacaccagtgggatttatctctgagatgcaag<br>gattgcttaatacattgcaaatcagtaaatgtgatataccaacttaacaaaatgaaagacaaaaaccacatgatcatttcaatagatgcagaaagatcat<br>ttgacaaaattcaaaatcaattcc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr4	58917708	58917709	2000071	0	+	Druze63; RIP_L1_chr4_058_01	CTAGCTTTATTCAAACTCTG	TTGCATGTCTATTTCTCCTG	LINE	L1	Ta-1	caagcagaggataatgctataaatgctatatgaaataattattttgaaatgaatcagtctgggagctttttttgatagagttaggataatttttaaaaat<br>cgcttatgatgacattaacatctagctttattcaaactctgttaaaataaaatctttgaacctaattctcattattatctcccatacctatgtttgattt<br>caatgattgctgctttattcttaatgaaagcaaagtttatggctagtgcatgattgaaatttaaaaataaataagctaaaacagacaaacaaacaaaacg<br>tagagctgtggctgggcacagtggcctcacacttgtaatcccagcactttgagagggcgaggtgggtggatcatgaggtcaggagatcaagaccaccagg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ccaacacggggaaaacccctctctactaaaaatccgaaataattagctgggtgtggtggtgtgcgcctgtagttccagat<br>actctggaggctgaagcaggagaatcgctggaacccaggaggtggaggttgcagtgagccaaggtcttgccactgcactccagcctggtgacacagcaag<br>actccgtctcaaaaaacaaaacaaaaaaatttgagctttgacttctctttttgttttactctgtatctccctgaaaaatcaggagaaatagacatgcaag<br>agattcttcttattcttttccttttggaagaagcttgtcatggggtgtagctttcctgaaattaatgtaactagtcattctgaaaatggtttaatttccc<br>attgtctgggctggcaaaaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	58887287	58888337	2000072	0	+	Druze82; RIP_L1_chr4_058_02	ATTTCTCAGCATCCTCTGCT	TGGAAGTCAACGTAAACTAG	LINE	L1	Ta-1	ttgggcaaaatagttgcctgattgaaagcaaccaatagagacatctatagaacctcaggtatatagccaatcctgggcttggttccccgtagtttggagg<br>atataaaaacaaacattatatctgttttcctgaatcaataatttttaatcaagtttatagaaacaatactttcacgtgtgtcggacaaagggtaatgaac<br>tgtattctgtaaataggcactttattgttagacataatggaaattgctagattggtggaagtcaacgtaaactagaatagtctagtaaatcttttgaaaa<br>tggagtagggcatagataatcaggaaaaggagacaagtaatgcagtaaaactaaggcatagcatatgaaagcacacaaataatactaaaacctgac<font color="green"><u>AAAT<br></u></font><font color="red">GGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTC<br>ATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAAC<br>AGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGA<br>GATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTG<br>GTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTG<br>GGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAAC<br>CCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGATCATATCCTTTGT<br>AGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACA<br>ATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGC<br>TAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATA<br>ATAAAAACAAAACAAAACAAAACAAAACAAAAAAAAAAAAAAAAAAAAAGA</font><font color="green"><u>AAAT</u></font>ctctcagatttgtttgtggtcagcagaggatgctgagaaatggtc<br>tctcccctaaccaagtctagtgaaattggtgttttgtgtgcttgtttgtttttcttttaccatttaatatcttcctgtctcataaatagtatccaggttt<br>tgataaagaactatcacccatgggcattaaggcaaaccaagtaaacatttataaggagcagttagttcttttcttcctggccttgattttatttactcaa<br>ttaattatttaatcgtaacaaggaacatagtctccctgtgctctcttcatccctttgcagtaatcagcagtgaagggaggcaatgcagtaaatgggctct<br>gtacggaaggataagagaatcatgaataatggttgtttttagtaccatgaa	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr6	46310202	46310203	2000073	0	+	Druze83; RIP_L1_chr6_046_01	GCTATGTTCTATATGTAGGT	TGAGACATCTGGTATAGAAG	LINE	L1	Ta-1	gaaatcacattcctctttgactgagatatgtcttttgagtgtagtgttagagtgtcaagagtagagaaacaagaacctggctatgaaagactggctctag<br>gctcaaggaaaagggacaaagacttttaggttactttcaaagtcaaccagccctggaataggaataagtaaggaaaaagagtatcagggcaaatgctcta<br>ttaaagaatagttattgtgcatttggctggagttttctttgtgctgtgtctctgagacatctggtatagaaggtgaagtggagaaagatgtagaatgcca<br>gtggtggaaacataaatcaccttatcaagaaggaagttttagccaggactggtggctcatgcctgtagtcccagctactcaggaggttgaggtgagagga<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tcacttgaatccagtagtccaaggctgcagtgagctatgattgtgtcactatactccagcctgagtgatagggtgagacc<br>ctgtctcttaaaaaaagaaagaaagaaagaataagccagaagaacacgacctacatatagaacatagcttttctttcaaacccagagatctgatgaaagg<br>aaagcctaaatgaaccaaattccataaagcggtaagcccttcccatgggagcaaaagtacatgtttgctttcatccttggtgtagttgtgggagaaagaa<br>tttgccatagagaggcataaggagaaaccagatgaactcacagaaaacttttatggtttgatgtgggctagaataatggatcagaatcccaaagagtcac<br>agccaaagagtaagtctgta	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	133341835	133347885	2000074	0	-	Druze84; RIP_L1_chr6_133_01;AC208158	TTCAGTAAGTTTGCACATAG;NA	TTTGCTACACTATACCTTTG;NA	LINE	L1	L1HS	ataaagaaagaatcaaatggaaaatgtggaatttaaatgacatttatcaagattagaaaatcagtgcataggtataacagcagatttgacctagcaaaag<br>atgaattggtagctgtaaaataagaaaaataaaatatatagaataggaaagagaaaaggagagaggtagagggagaaaagagaaggagaacacagaaaag<br>gtgatacaagatttacaggaaagattaagaattctaatgtattagtatttaaaacatcacaatagaggaaaagagagcaaaagaaatatttgaagagatc<br>attgttgagaactttcaaaaactgatgaaagatattaaactacagattcaagaatgctcacaaactccaagcaatttttttttctt<font color="green"><u>AAAACATCACACCT<br></u></font><font color="red">GAAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACAGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAACGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCGAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCAAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCTCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATAGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAGTATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGCCTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAGGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCCCCAGCATGGCACATGTATACATATGTAATTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACATCACACCT</u></font>atgtgcaaacttactgaataaatgagacagaagga<br>tagaatacaaatcttaaaagtagcaagaaaaataagacagttatcttcaaagccacaaaaggtacacagagagctgtcttctcaacaggcaaaaaaataa<br>aagcaagagaatggagtaatatatctataagtctgaggaaaaaacctgctaaggtacaaattttatacccaataaaaatatacttgaagaaggaaggaga<br>agtaagtatttttcagacaaacagaaatcgagagaattacttttctaaacacttgcactaaaggatagtcatcaagcatgaggaaaataagttcagatgg<br>aaggttgggatgcatggagaaatggagagcaatgaaaagggaaagtatatt	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr11	67599021	67599022	2000075	0	-	Druze85; RIP_L1_chr11_067_01	TTCAGTCAACCCAGTTCTAT	AGAGTGAGGTCCTGTCTCAA	LINE	L1	Ta-1	agcctaggagttcaagagcaggcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcttggtggtacatgccctgtagtc<br>ccagcttctggggaggctgaggcagaagaattgctggaacccaggaggcagaggttgcagtgagctgagatcatgccactgcactccagcagcctgggca<br>acagagcaaggcccagtctgaaaaaaaaacaaagacaaaactaaaccaaaaaaaaaccaaaaaacaaaaaacgcacacacacacaaaaacaaaggtagac<br>tccaataggaaaaattcactcaaaagcaattcaaataattattcagtcaacccagttctatctcagttctttattatatatataaacttattctgtccag<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atgccctagttttctttttcttatcttttttgttttcttttgagacaggacctcactctgtcacccaggctggagtatag<br>tggcacaatcatggctcactgcagcctcaacctcctgggctgaagtagttctcccacctcagcctcccaagtaactgggactacaggtgcatgccaccat<br>gctcagcaactttttgtattttttgtagaaacggggtctcactatgtgggccaggctggtcttgaactcctggactcaagaagtccacctgcctcaacct<br>cccaaagtgccaagattacaagcatgagccactgcatctggttgattccatagttttctttttctctttgcccattgcctggattccataagcagaagga<br>aaacccaggggctgactttg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/45	NA	NA	NA	intergenic	
0	chr5	1968411	1971378	2000076	0	+	L1HS426;Druze86;31075; RIP_L1_chr5_002_01	CACATCATTTGCCTAAATGC	TGAATTGTCATGATGCTGTT	LINE	L1	L1HS	ctgagcctgcctttcccggtcttttggtgctggctgtggtgctgtgagagatgatgaagtttgtaagtcagggcagtttttaaacccacagacaagaagc<br>acatctgcaaaatgcagcctgggagctgtctactctgcccggaacagtggggatctctgcaggaggaaatcgcatagtttcccacgggtgaattgtcatg<br>atgctgttgtggctgttggcaggaagcttcctcacattttcagtttaaatgcattcctcctgatctttccaaaagacggaggcagaacagctggttgcca<br>tactccgcataaagtcctttgggtaaattgaaggtaaattttatcccttaaattctgctccatggggtcacagccttgggtccttaaa<font color="green"><u>TAAAGAAAATTG<br></u></font><font color="red">TGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCT<br>TTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTG<br>CTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTA<br>GTGCTATAAATTTCCCTCTACACACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGA<br>TACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAAT<br>AGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCC<br>AATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTT<br>TAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAA<br>GTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTA<br>TCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAAT<br>AAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTC<br>TCACCGCTCCTATTCAACATAGTGTTGGAAGTTCCGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAAT<br>TGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGG<br>ATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCA<br>AAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAA<br>ACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCAT<br>CAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAA<br>AAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAG<br>ATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTC<br>CCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGG<br>ATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCTA<br>AAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAA<br>CAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAA<br>AAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCAT<br>CATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTG<br>CTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGAT<br>CTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGT<br>TTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGA<br>ATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAA<br>ACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTC<br>GGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACT<br>AACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAAGAAATTTG</u></font>ggggttttttc<br>ccctataaaagcaaaacaatccggcaactgcaccatggatgaagcatttaggcaaatgatgtgatttggataccaaagggaatctgaggcccggcgcagt<br>ggcttatgcctgtaatcccagcactttggaaggtcaaggcaggcaaatcacttgaggtcagcagtttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnn<br>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattcagttcaccggctgctcgtgtgagaa<br>tcatactgagcacccacagaaaagcctgctgtggacagtgccgtacagttcacaaaggcgccgcaaactatgagctc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	3394	204	NA	intergenic	
0	chr18	51952969	51956959	2000077	0	+	Druze89;237810;L1HS552; RIP_L1_chr18_050_01;AC203632;AC209537	ATGCTTCCTCTTCATGCTTT;NA;NA	TATCTGTACATGCATACCTA;NA;NA	LINE	L1	L1HS	gaggtggccacttccatgatgtactttaggaacaggacaacctgtccctgcccttgactatttgtttatctagctattcatttactaaacatttaaaagc<br>aatgactataagtgaagcattatgttagatgttagggatataaaattgactgttaaatgatctttgccctgaaatagctttcagccgattgaaagacaca<br>gtaaaaacagtgatactttgtaatagtgctatgattagtatacattgtaataagtgatatatatgtatatacacacatacaaaggatatatctgtacatg<br>catacctaaatgagacaccacacccagctatggggtgtgaggtagacggtgtcaagaagttttcctggagtctctctgaatgaagattaagagtt<font color="green"><u>AGCCA<br></u></font><font color="red">GTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTGAGGACTTGCTTTATGAATCTGGGTGCTCCTGTATTGGG<br>TGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGGTTTAAAG<br>TCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGCCTATGTGTGT<br>CTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCTGTGTCTTTTAATTGTCAACATTAGACA<br>GATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGTACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATC<br>AACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAA<br>ATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACC<br>TGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTG<br>GGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTA<br>AAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAA<br>CCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAA<br>TCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAAT<br>AAACTAGAAAATCTAGAAGAAATGGATACATTCCTTGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAG<br>GCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGCT<br>GGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGC<br>AGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACA<br>TCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAG<br>AGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGT<br>ATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAA<br>CGGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTAT<br>TCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAGCCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTG<br>ATAAGCAACTTCAGGAAAGTGTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGG<br>GTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACT<br>GCTCAAGGAAATAAAAGAGGACACAAACAATTGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTA<br>ATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCC<br>GCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGACTACAGTAACCAAAACAGCATG<br>GTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAG<br>AAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACAC<br>CTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACAT<br>AGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACA<br>GCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACA<br>ATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGC<br>CAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAGATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATC<br>ATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGA<br>AGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTG<br>CTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAG<br>AAAACGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTC<br>TCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATAT<br>CACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAG<br>CATGGCACATGTATACATATGTAACTAACCTGCACAATATGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGCCA</u></font>aagc<br>atgaagaggaagcatgtgtgtgaaggctgctccacggtgaaggttgaaggagccaatcatggcaggcatggaattgtgagaaagcagttcactgtggctg<br>taaaggagaggcccagtggtgagaggtgagggtggaggagaagggaggaatcaggttggaaaagacctgttatcccttagatccaccttattgtgaattt<br>agcttattctccttttctgggagagctagacaatctgagagcctggcagcaatgggaagtttgtggtggcattggtgttttaaagagattttgtagcgaa<br>tgttcacaatccaggaggaggagtgtagctgagaaatacagtgaaaagcacagggcaatgggtatacggaagaggatgtccacatagaaaa	UCSC;UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	48/48;NA;NA	NA;NA;NA	NA;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr5	147338022	147340528	2000078	0	-	Druze92; RIP_L1_chr5_147_01	TCTGACACTTCTTACTTATG	TCTACTGCAATCGAGAAAC	LINE	L1	L1HS	gatcagatgataatgcaggttgcccaaggtaggcatggctggagcatttgtgtgctgcagtctttggtagcctggattttattccaagtatgaggaaaaa<br>ccattagaatgacttaaatatgttaaaatgtggttaccatatttacaaaataccttattctgagaaattcaggtctcagaaggcactctcatattgtccc<br>tctactgcaatcgagaaacctgaggctgattcatcttctgctaggtgtatgtggcggatgataacaagccattcaccagcctagagggaccaacctataa<br>gggtctacagcttagggaccttaagaacaggaaattaccaattgggagaaactttaatgaggacaggcaatcttttgggacactttaaa<font color="green"><u>ACCAGCCTGGA<br></u></font><font color="red">GTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTT<br>CCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTC<br>TTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGT<br>CCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTG<br>TCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAA<br>GCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCA<br>TTCTTATACACCAACAAGAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAATCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTAGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAGAAGACAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAACAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCACTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCAAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAATAAAAACAGTAACAATATAAAAAACAAACAAAAACAAACAAACAAAAAAA<br>AAAAAAC</font><font color="green"><u>ACCAGCCTGGA</u></font>aacaaggtagccaagactttatcctttatctcatctgatcttcacaacaaccaggtcaagtggaccaagctgaagttatcat<br>ttcccataagtaagaagtgtcagattccataaagaaaattaatttatgtttaacagagccatgggcaaagattatttcacctattttgctgactgagaaa<br>ggaattatgaaaatttgcctgattttacatgcatttgtcacagctggactagcactaaagtatagatgcccggattctcgctgtctccgcggtgtcactg<br>tctccttgtgacattcagggaatggggaaattttgtaactttcatcaagtcagctaaggagcaacccagccagcttcccacaaactacttaaggcattca<br>gcccaca	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr4	82929314	82931391	2000079	0	+	L1HS427;Druze94; RIP_L1_chr4_083_01	AATATTCAGCCTTCTGACAT	GCACATTCCAATTTGTAGTG	LINE	L1	L1HS	tctgcacattccaatttgtagtgcaaaacgttctcagtaagggagggctgaaggggctggaggagcgtggctcttataaaatctcaaaattgaggaacaa<br>aagcttccttccaggacaaaacccatggagaaactgctgggtgtggatgccaacttgaccaggacgggagtaacagggataaaatagagattgagagaga<br>agactcagattaaaaattgcaaatggaagtccaaataaatacagttaatttagtcaaagttgtctagtcaattcagcatgaccattaagatgaacacagt<br>tatccaaagctaatgctttttccatttttattaagatgtttgttaccatacgggcaaagactgagagtactaaataaaataaagctt<font color="green"><u>AAGAAATAAATGA<br></u></font><font color="red">TGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATT<br>CAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGA<br>TAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCCATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCGTGGG<br>TGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTG<br>CTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAA<br>TTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCG<br>CATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCCAACTATACTACAAGGCTACAGTAACCAAAACAGCATGG<br>TACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGA<br>AAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCCTACACC<br>TTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATA<br>GGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAG<br>CAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCCCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAA<br>TGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCC<br>AAAAAACACGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATTATT<br>AAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGT<br>CAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTA<br>TAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAA<br>ATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCA<br>GTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCAC<br>ACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCAT<br>GGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAA</font><font color="green"><u>AAGAAATAAATGA</u></font>atagaagaa<br>tattatactcaaatatagttttttcagttataagattctatgagaaaaacaaatagtttgatgtcagaaggctgaatattacaattttttttactttatt<br>aaaacattgagtttatttcacatgtacatttttgtctccctgccatttccatgtctggccactgcaactactatatcctagcacacatttcatacatatt<br>taaaaccaagcagagggtggagatccatctttaaaaaccaaataggcattttggaaaacacattcttagcagtggaacctggacatttatcaaacatggt<br>agggaaagttctcactctgtgttatcaaacagacatctagatatcaactgttatagaaatgaaataagatgggaaatt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	57	2230	139	NA	intergenic	
0	chrX	11725367	11731399	2000080	0	+	L1HS24;AC004554;Druze96; RIP_L1_chrX_011_01;AC208301	TTTATGTTCTATTAACCAGA;NA	TGTCCAGGTAATATTGTTGA;NA	LINE	L1	L1HS	gatgtacatgtgagttgtgtgtgtattctttatccactgacatttcaaaattctatttaattatatcttcatattttaaaaatcagatgattcaggggac<br>tgattcgataagttgtcttacttccactagtggaataccatgcaactgcaaatccaaggactaagaagttctcttaagttccaatgtgggaagatgtcca<br>ggtaatattgttgagtgaaaaatccaaggcactgaacaatgtgtgtgtatatttatatatatagaacaccaccttttgtaaagaaaaggtggaaaataag<br>aataaatattcataggagtaaaacttcttgaggaataatgtttcgtgtattttgccttttgaaccaagtaaatcaaagaactattc<font color="green"><u>AAAAATAACAATAA<br></u></font><font color="red">GGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCGAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACACAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCAGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACCAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTGGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGACCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGACAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAACAATAA</u></font>aatgagataaaatctactaaaaatcaagtgaaacaagtttttgatctggttaa<br>tagaacataaaatgataattaaaacattagctaaaattatgattcaaattcaaattcagggatttttattatgctcacaaagttgtgcaaccgtcacaca<br>aattccagaactttttcatcacctccaaaagaagccctgtgctcattagcaatcactctccattcccctttcccccaatccactatttaattttttgaaa<br>aacaagttataaaacactcaagcacaacataaattccaagcaaaactcaaaactggtttctaaacagcactcattatagtagcacctgtgaccaatatct<br>ccaagaagttgggttagggaaagaaaactgtca	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	59;NA	6148;NA	101;NA	NA;NA	intergenic;intergenic	
0	chrX	11953200	11959435	2000081	0	-	L1HS28;AC002980;Druze97; RIP_L1_chrX_011_02;AC206602	TTTGTGACACTGGATTTCTA;NA	GAGTAGAATGCTTCTGTATT;NA	LINE	L1	L1HS	aaactatgggataaatctagacgcttgcttgaagccgaccggatttcttcaaactttgaacactggatttattccaactaaggtactgctctctttaagc<br>ttttaagtacttgaggctgaagtatttcttaaacacattttagaataagccactgtatattggagctgtttttcctctccaagagggagtgatgtgtaca<br>aagcacctacagatataaagtggcatacggctaactgtgggagaggaagagtagaatgcttctgtattttatcaagtgctgggggctgtggagaatgcaa<br>ttgtaagcaaataccagaatgacctataggtaaacatatgggatttctcataataatcacctcttaaacctcccaacaatactgtt<font color="green"><u>AAAAAAAATCACCA<br></u></font><font color="red">GGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGCACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAGAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAACACATTAAAAAAAAAAAAAACAACAAAACAAAGCAAACATGGAAATGTTTGTT<br>ATTTTAATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAAATTTGTGTACGTTAAATATGTGAAACTTATTGTATGCTGGTTACAC<br>CTCAATAAAGCTGTTAAATTTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAATCACCA</u></font>atagttgctgctagaaatccagtgtcacaaaaggccaaagtttattgaca<br>aattggtgtatatgaaagacctcgaccttcaacattcacaagaaaagatcaattgcatgtaatttgtcttgcccgtaattttgctgttcacataatatgg<br>tgaagatccctcttacgctacaaacaaattaaattaaacaacaacaacaaaacgatcttgtcttgaatagcaattgctatgaacttcaaggacatcattc<br>attccttcatcattcaatctataaatatttactgactgtctgccatgtgtcagaccctgttctaggccttgggaatagagcagtgggagagatagacatt<br>gttcataacttcaaagagtttataatctcaaaggaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	58;NA	6531;NA	282;NA	NA;NA	intergenic;intergenic	
0	chr7	31523780	31525253	2000082	0	-	Druze98;AC005090; RIP_L1_chr7_031_01	CAAGTTCATTATTCCACAGA	AAATATGGTTTGGAATGAGC	LINE	L1	L1HS	gtgatttctgggattttggtgtacccatcactcaagcagtgtacactgtacccaatatgcagtcttttatctctcaccccctcccacccttcccccagtc<br>cccaaaatccaatgtattattcttatgtctttttgtcctcatagcttagctcccacttatgagtgagagcttacgatgtttaatttttcattcctgagtt<br>acttcacttcgaataatggtctccaattccatcaaaattgctgtgaatgccattatttctatcctttttatggctaatagtattccacagcgtatacata<br>tatatctcacattttctttatccactcattcattgatgggcataaaggctggctccatatttttcaattgcaaattgtgctgctat<font color="green"><u>AAACATGTGTGTGC<br></u></font><font color="red">CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATACTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATGG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGGAGAGCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACATGTGTGTGC</u></font>aagtatcttttt<br>catataatgacttctttttctctgagtagagatgcagtaatgcattgctggatcaaacagtttgagtacattatttattcaatgactgctttttgacaac<br>ttaccatgtgctgagctctgttgtgagcactggcaatacccaagttgggagagaggggttgggatggccctggaggcccccctcttccccttgctgtggg<br>ttagcaaagagaggttgttcctgagacagtgaccaaagcacacagccaagcactctggaggctccacctctctgatgaggctgcttctctattagggagc<br>ttttactttacaagatcacccattcttacaaatatgcaggacaaggtgggagtggaggctttccctctgccaga	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr12	126783518	126789597	2000083	0	-	L1HS117;AC005885;Druze99; RIP_L1_chr12_125_01;AC219111	GATTCTAAAGAGGTCCATGT;NA	GATATTACATGCAAAGGTGA;NA	LINE	L1	L1HS	ctctgtgcatcccaactatatcccataaagagtttcccatctataaaatgggattcataatagtagttaactcaaggtggcattgtgaggattaaacaag<br>ttaaaacatatgaatcactgacaacagtgcctggcacattagcacatagtaagtgcccgatcagtataaagcatcattgatattacatgcaaaggtgatg<br>ctatggtttggatgtttgtctacccaaacctcacgttgaaatttgatcccaatgtggaggtatggtctagcgggatgtgtttgggtcatgggggtggata<br>cttcatgaatagattaatgccatgtccgtggggatttgggggtgagtgagttctcactctattagtttccataagagctggttgtt<font color="green"><u>AAAAAGGAGCCCGG<br></u></font><font color="red">GAAAAGTTCTTGCGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCC<br>ATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTG<br>CCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATTGGGTCACTCCCACCCGAATAT<br>TGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGC<br>ACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCT<br>CGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAAC<br>CTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAA<br>GTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTG<br>CAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTA<br>GATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAG<br>CAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAA<br>AGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACC<br>AAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGA<br>AGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGG<br>TGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTT<br>CAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAA<br>AAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAG<br>AGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAA<br>TACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGT<br>ACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGAC<br>AGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGAC<br>CCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAAC<br>AAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGG<br>ATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGAC<br>TTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGA<br>ACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTC<br>CAAAATTGACCACATACTGGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAACTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTA<br>GAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAG<br>AAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGCGTGTAGAGGGAAATTTATAGCACT<br>AAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGC<br>AGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAA<br>GGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCAC<br>CGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACA<br>TACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAA<br>AGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGA<br>GGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTG<br>ATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTG<br>GGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGA<br>AAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGAC<br>AAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCA<br>ACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGA<br>CGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTA<br>CAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACC<br>TAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACAT<br>TCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACT<br>TTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAG<br>GCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAAC<br>AGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGG<br>TGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACG<br>TTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAAT<br>GGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACA<br>TGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCA<br>TCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAG<br>AGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGA<br>GAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATAC<br>CATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCACTATT<br>CACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGC<br>ACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAGAAAACCACTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGAGCCCGG</u></font>aacctc<br>cctcactttcctccctctctcgccatgtgatctctgcacacactggctgcccctcaccttctgatattagtggaagctcatggttctgcaggttgacatg<br>ttcttgcaaaacctgaagttgtactgaagaattgaagccaacctaactctaaaaccttttcttttttccatatctagggatatcattttctagggtaaat<br>atgcttccctaatggaaaacatggacctctttagaatcagaaatctcatctgtacctgaacctgatttcaactcccaaatcctgaatttgaattgacaat<br>ctaaaataacaaggttttgagatcctgggaggaagtgagtatattttgcatcagggaggagcatataaaatctttggtca	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	57;NA	6629;NA	535;NA	NA;NA	intergenic;intergenic	
0	chr8	17859506	17860422	2000084	0	-	L1HS77;Druze100;AF417124; RIP_L1_chr8_017_01	GAGAAAGCACCTGTAGAAAC	GTCTAAAGAGCTCAACTACA	LINE	L1	L1HS	gttttcacacttagagcgtctaaagagctcaactacagttgagggttgaagattccagtcatttattaattcattaatgtttactgagtgtctacaatgt<br>gcatgtactatttttggacagtgaccaaaagagattaacatctcagatgtcatggatcttgtattttagcatggagaggcagacaaatattacataggtt<br>aaaggtggcgtgcaagcactaagcaggtaaaggataaggcagaggtttactcagcaaaagttaacatttgaccaaacagttgagttcaagaaaacaagcc<br>atgcaggtaggtatgtgaaggaagagcattccaggcagaagtattagcaagtgccaaggcctcagaagtgctaacaactctagtaggagagtt<font color="green"><u>GAAAGGT<br></u></font><font color="red">CAAAAAGTGGGCGAAGGACATGAACAGACACTTTTTAAAAAGAAGACATTTATGCAGCCATAAAACACATGAAGAAATGCTCATCATCACTGACCATCAG<br>AGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTATAAAGTCAGGTAACAACAGGTGCTGGAGAGGATGCGGA<br>GAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATAC<br>CATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATT<br>CACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGC<br>ACATGTACCCTATAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAATTTTACCAAATTTTTCCCCAAAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAGGT</u></font>tagaagcagcggcaaaaggatagtaaggccatttaggaactgttgcaattgcccagaacaaggctacgtgtttctgtttttacatgga<br>ataatctggacacgatcagctgactttttcctctcagctgtaaagtcagatacagagaaagcagtttctacaggtgctttctcaaagatctctcttctct<br>caaaacattccanaaaaaaagcaattacttctgctgagggaagaaatatgagcacaatggaagcaattctctgtggtacatgtcttacaaagaaaagtat<br>gagtacaatataagaaactagcccagtgacaatgtattttgtagtttaccatatctagatgaaaagaaaacaattacttttcacttctaattgttaaaac<br>ttcca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	NA	58	990	78	NA	intron:PCM1:NM:006197:29/39	
0	chrX	55585161	55585162	2000085	0	-	L1HS30;Druze101;AL022166; RIP_L1_chrX_055_01;AC206417	CTAGGTATGATTAGAAGATG;NA	TCTTAGACAAGTTCAATCAC;NA	LINE	L1	L1HS	atcatgttagcatgtttctaacgactctctcagggccttgaaaggggcctgtgcaactgacagacactgaagattaatattccttagcttcatagtagat<br>gcacctctgcaccacatctgatacatcaagtctagaactcttaaggttaataagtggttgaccctccagtagttgtgctggtggcccagtccagcactgt<br>tgactaatacaactctcacgtttatttgcaaacctcctagaagtctttcttagacaagttcaatcacttctcctcaaaggaaaattttgtggatttgtca<br>tttaagatggcaaagatgtatttgtctcttgggaattgcccctaaacagaaaggaaaatgagacttagtaacataaactctaacatc<font color="green"><u>AAGAAAACAAGAA<br></u></font><font color="red">ATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTA<br>TCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAG<br>ACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGA<br>CTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCAT<br>ATCCAGCCAAACTAAGCTTCATAAGCGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGA<br>GCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGC<br>ATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAA<br>TTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAA<br>AATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGTCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAG<br>ATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCAC<br>CCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAG<br>ATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCA<br>ACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAA<br>TTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCT<br>GCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGG<br>GACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAA<br>AAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAC<br>CCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAACAGAGAGAAGAAT<br>CAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATA<br>AACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGG<br>CTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTG<br>GTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCA<br>GAGACACAACCAAAAAAGAGAATTTTAGACCACTATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACAT<br>CAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGA<br>GCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTA<br>TTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAAC<br>TGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATT<br>CAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGA<br>TAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAG<br>TGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTG<br>CTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAA<br>TTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCG<br>CATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGG<br>TACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGA<br>AAAACAAACAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACC<br>TTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATA<br>GGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAG<br>CAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAA<br>TGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAATTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCC<br>AAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCA<br>TTAAAATGTCAGGAAACAACAGGTGCTGGAGAGGATGCAGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAA<br>GTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGC<br>TATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGA<br>AAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCT<br>CAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATC<br>ACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGC<br>ATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACAAGAA</u></font>ta<br>tatttagatgtataaccttgaaccacaatgaggaaagaggattagtagcttacttagcagagcaatagaatgtaaatttaagtgttttcagagaggcata<br>gaaaaaaagatgaaaacccatttactccaaagacaattagaaaagtttttggaattttgggcactagaaactgtggaagtggaggtatggcattgggatg<br>aaaactggagtgttgctagaaattctaatacttagaaattccacaccatcttctaatcatacctagactttcaaggtgatcttagttccacagcatctgt<br>ctccactgcctctatgactgttacagtaagtagagccctgtgccacagagtcctcccaaagctcaaagcttgaattctttgtgac	Other;OTHER	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	4795;NA	97;NA	NA;NA	intergenic;intergenic	
0	chr7	130120655	130121250	2000086	0	+	L1HS13;Druze102;AC007938; RIP_L1_chr7_129_01	CACTGAATTTAGGCTGGTAT	CATTGTACAGATATGCCACA	LINE	L1	L1HS	tcactgctccccgttccagccctaggcaaccactaatctactttgtgtctttatagatttgcctattctggacatttcatataaatggaatcatacaata<br>tatgttcttttgtgactggtttcttttacttttcaaggttcacccatgttgtagcatggattagtccttcaatcccttttattgattaataatattccat<br>tgtacagatatgccacattttatttttatcccttcatcagttgatggatacttgtgtgaactcagtggatttgccttaaagtgcttgaacaactatgaca<br>agcagagtgttgtacgatggagatagtggaaatgggggtaggtgggttacagatgggaaggaaccccatctatggtttt<font color="green"><u>AGAAATTCTGGGTTTTGTTCC<br></u></font><font color="red">ATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGAGCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAA<br>TCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACT<br>GGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAAC<br>CATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAG<br>GGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATCGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAG<br>CGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>ATTCTGGGTTTTGTTCC</u></font>tttcttcttcttttttttttttttttttttgagaaatgaacaggccaaagagaggagtaattcatggatctgactttattcat<br>ggttcattctccccactttagtaccatattccattccccactgcttagaccacagaggagaaagtctctgaaataccagcctaaattcagtgaaacctgt<br>ttaaataagtaatttcattcaactgaagaattttcagtagataaaatagataaaatacggcctccaggactcttgcaccagtctgacttttagctgctgc<br>caaaaacaaaagaatgtttcacttggaagtgttccttgttcttcttttaaggtaaatctttactttgcagattgtagagttttcaatattatcttg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	59	745	128	NA	intergenic	
0	chr2	170105134	170111162	2000087	0	+	238226;Druze103;L1HS15;AC007556; RIP_L1_chr2_169_01;AC204955	GTATCTTTTGGTTTCATCAG;NA	AATCAATGACCAATCAGTCA;NA	LINE	L1	L1HS	aactattgcagcaggaaaataaacatatatttttaaaagaaagaattgcatcaatgtggattttctctttaatgatagtttaactagaaaaccctaatta<br>atcagaaaatgtttaagatgtcataaattttatttgaccaatttccttatctgtggtctaatcaatgaccaatcagtcattggactccctaaatctttct<br>agagcctggcaatcccagtcccactactaacaaaggcatcctcatatacttaaataagtaaggagttcaataaatcttttagttctgtgtggtgcacaat<br>caagaagatctagccctttagtaaaaaggtacacaatttctatggtgttgcacaacaaaagaactttccaaaagaaattcac<font color="green"><u>AAAAAACAGCAATGTTGA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGAGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTC<br>CCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGGAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGTAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGTCTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTGTTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGGCACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAGAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTTCGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCAAATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAACGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGAGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAA</font><font color="green"><u>AAAAAACAGCAATGTTGA</u></font>aagaaataaataattattgctattttgggaatgttgtgttgtcctcatgggta<br>tgcattcaaatttttttcatactgatgaaaccaaaagatactaaaactacattttctcgaatcccaaaacatcccagcccagagcagagaaaattcaact<br>ttttataatgtttctatgtgacagcaaatagcatgtgtctgacatcattagtgaaaagggagtaaatggatggcagcggcgggagggggacgggaggagt<br>atttataattaactcatcaaaaatctcatgagcattttttaaataccacacactcctccacagataaacagacagcaggacaagatatgcaatatactta<br>ctaactattcattccacacatacattcta	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:LRP2:NM:004525:19/79;intron:LRP2:NM:004525:19/79	
0	chr2	144010806	144010807	2000088	0	+	Melanesian104; RIP_L1_chr2_143_01	CATGTCAACAGTTTGATAGG	ATGAAGTGTTTCTTCCTGAC	LINE	L1	Ta-1	tctagatgacttgcatcaatatttgattagatacattagctggtcgaactctcaaatgatcagaataaacatgattatgtcttaaaaacatggtattaag<br>gcattgttggacgttggagtgtatgtgtgcaatggtttcattacctgcagaataatgaagtgtttcttcctgactgaaaaagaccatcatagcttcagct<br>gatgtgctacattggaaatagctttagaattccaagtttgaattaggcttggtgttcaatctcagtctatgaattatagattacagatagcaaatgacta<br>ttgagatttttggttcaaggaaaatcaaagaagagcaaaattagaaatattttaaaatttgaaatctgtctttaaaaagtttgatggattagcaattgta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgccatgtaattacaatgtctgcagagaagttgaacttaaaatgaataggaaaacaaacaaaaaattgtatgtgcctgag<br>aaatgttgcaagtctcagaagcacacatttgtgacaaccaaaaatggacagatttcatttatttcatttgttcatatatgctgtttggatgtttgagttg<br>ttttctctttgtactgaaatccaaattttccttcctagttgaaatcctatcaaactgttgacatggactgaatcttatttgattgctatgtggaaacata<br>acaatgacaacattaattattaagttttggtattcaacaactttcagtaaatcagaatgatacttgctaagtttaagaatatctgcatattttataacag<br>cacactctttggcctaattg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:ARHGAP15:NM:018460:6/14	
0	chr19	52175938	52177513	2000089	0	-	L1HS112;Melanesian105; RIP_L1_chr19_056_01	CTGAGTACTGAATGTGTATG	ACTGAGTGCCACTTAATTTC	LINE	L1	L1HS	taaataatgcagcctcaaaatatataaatccaaagttgtcagaactacagaaaatgtccaaattcataatcatagtgggaaattttttaacatatctctt<br>tcattaatgagtaaattaaacatgaaaaaagtcagtgaagatgaagaaaatctacacaacatcatcaacaaattgacttaaacaaaagacaaaacagtac<br>actcacaacagcaacaatacatgcattattaaagcacacacagaatatttgtacaacttgatcagagactgagccattgagaaaatctcaacacagttta<br>agggatttatatcacaaaaagtatattttctgatcactttgttgttaagatggagatctgaaacaaaaatattattgaactcttgaaaggtt<font color="green"><u>GAAAATTA<br></u></font><font color="red">TGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATC<br>CAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAG<br>ATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTA<br>CTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTT<br>CCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTCAGGACATAGGCGTGGGCAAGG<br>ACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTAC<br>CATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAA<br>ATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGA<br>AGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGG<br>AAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGA<br>TTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACAT<br>GCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACAT<br>ATACACCATGGAATACTGTGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCG<br>CAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGAC<br>TGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTAT<br>ACATATGTAACTAACCTGCACAATGTGCACATGTTCCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTA</u></font>agaaattttatccagt<br>attagagatggaacctaatgggagatgtttgggttatgggagtgggtgcctcatgaatggcttggtactgtcctcttggtaatgggtgagttcttgctct<br>attaattcttacaagagcggttgttaaaaagaacctgccacctgcactgtccctatctcttgctttctctctcctcatgtgatctttgcacgtggtggct<br>cccctttaccttctgccatgagtagaagcggcctgaggcctcaccagaagcagatgctggttccatgctttctatacagcctgcagaactgtgagccaaa<br>tacacctcttttctgtataaattacccagcatcaggtattgcttttttagcaagactaaatggactaagacagata	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1686	102	NA	intergenic	
0	chr9	105073446	105073447	2000090	0	+	Melanesian106; RIP_L1_chr9_102_01	AGAGGTCTGAACAGTAAATG	TCTGGCTCTAATCAATGAGT	LINE	L1	Ta-1	ctttatttttagtcaagtgtaaatagacacaaaatatacatagttttctctggctctaatcaatgagtggattttctcatgataaaataacttagtttat<br>aaataacagtaaaatattatagaatatgactaacacctagaagtaattcaatgagagttggtttttgcatcaaagttatgcatagtcaaattaagtagct<br>ggtatacatgtagaatttcctagagtagtttcatatacataatactattaattctctcattaacactaacagttgattttattgttattattgacattaa<br>agagaaggctcagagaaattacataacttgtatgaaatcacacagtggagatttgacatcagatcttttctatctccaaagtccttgtactttccattat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>actctgttgcttgtctaattaagataatgcatcatatctagttttatctcctactcccttttaggagaaaaaatagccca<br>aatgtttataatgtttcttgctgacaagggtttcctcaatgtgtcagaatttaagtactctggctttagtgaagagtgccgtataatttctcttatctca<br>gttattacaaatttaactagcttaaagtagattttattcatcatacccttctacctacgaattttggcttactgggcttcaactattagatgtcaccttg<br>actctctgtaacaagagaacctttctaagaatcccagattctacactccatacccgcatttactgttcagacctcttatgaagttgatttagccctacaa<br>gtctcgctgtgcttgtccgt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intergenic	
0	chr7	91426262	91426263	2000091	0	+	Melanesian107; RIP_L1_chr7_091_01	TGAATATCTTCTCACCAGTG	AACTGAAATCACAGGATCAC	LINE	L1	Ta-1	aaaataatcatggagaagaaaagaaaatcatggcacctaaattaataggcactagacatttgaaacaaggaattgaaataagtgtgcaaatttaaattgt<br>ggaattttcctttgtgttcttctcatagttattcacgatacaggcaatatcatttgcaagcaaagataaacattctttactgatgccaggaaacattctt<br>tgcagcaaaaacttactaatgaatatcttctcaccagtgggctcctatctcctaccaagaagaaaaactaattatttttcttaaatttgtttcaattttt<br>agattatattttctacattaagcaaaaaaaaaagactgaaagtctatgagccctttaaatcatattttatcacaattttcttcacttaatcatattatag<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaggagagagaccattcttgatatgtctttatgaaagatggcaatatgttatcacttttcccttcaaattatattgaaga<br>tattggcatagaaatagattattagcttattctattataattaatgtgtttatgatgactaaagaaaataagggttctatgtgatcctgtgatttcagtt<br>ataaccaatatacacaaccagtaagttctttaaaatcaaggttgatcagaaatgaccccatcacgtaggcctctacagtattggggggatgggggggttc<br>ctttttttatcttagatttatcttttattttatttttaattgctatggatatataatagttgtatgggtggaggtagggtttgttttgttgtgtgttttt<br>gagagggagtctcactctgt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intergenic	
0	chr2	102042774	102042775	2000092	0	+	Melanesian108; RIP_L1_chr2_101_01	AGGAAGGATCAAAGTCATTC	AGTAAAAGTAGCGTACAGAG	LINE	L1	Ta-1	ggatggagagaagttgatcaatgggtacaaacagacagaagaaatgagacctaggctttgatcaatctagtagagtgactatagttcacaaaaatctagt<br>tgatattttcaaatacccagataagaatcatttggctgcctccagaaaaagaaaagatacctgtttaaggcaataagtatcccaattatactgatttgat<br>ctttacacagtatagaaatgtgtcaaaatatcacgcatatccagaaaatatatacatctattatatatcagtctttaaaaatccaccaacttttaaataa<br>taactgtgttgagtgtggtggctcatgcttgtaatcccagaacttttggaggctgaggcaggacgattgcctcgggccaggagttcatgaccagcatggg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>caacatagtaagagcctgtctctacaaaaaattaaaaaaaaacaaaaacacaaaaaacatttctgggcatggtgacatac<br>gcctgtagtcctaaatactcaggaggctgaggtgagaagttggcttgagcctagaagttggagactccagtgagctgtgatcgtgccactgctctccagc<br>ctgggcaaaagagcaagacctcgtctctaaaaaataaaataaataaataaatactgcataatgacaaatatgtataaacaaaagctatatctaaaaaatg<br>accattgagaaattctacgtggattctttaggtatattaaatgcagtttgagattttgacagacccaagaaatgtcactggagttacatgctaccattca<br>tctactcattctttagtgag	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intron:RFX8:NM:001145664:2/12	
0	chr11	10042635	10042636	2000093	0	-	Melanesian109;AC011092; RIP_L1_chr11_009_01	GAATGGCTACAGTCAACATT	TTTGTATTCACAGGAACTGG	LINE	L1	Ta-1	gtcttgtgtttatttggtttttggtttttttgttttttttgtttttttggcagcctatgtgaactatttttgtttacctgaggattagtgttttaagtgt<br>actaacaatgctgggatttttaatgttaataagtttgtattcacaggaactggtttttatagaccctgtgatattttaatctaatccatacccgtttaaa<br>cttgggtgtccctccctgccccaaataatcttgtaaaatgctcttgacatcttttgtcatgtctgttcacctgtaatttggattttactagaacatgtac<br>tagttttagaaaatgtatccaacagttttcacagtatactctttaataggcatttttgaaaactgactaaaatgatcctgggccatcagctatcaacact<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttgtttccacagttaaaccacattaatcttgtatcatttgtgtttgtacctttttctatgcatgctttctttttacttgt<br>ccatggttaactttggccagttttttattagctattgatgggtcagtatgtctccatcgatgatctctgatattaaatatagggtttttttttaaagttc<br>ttaaaaaagtttttgttcagtttgtcttacaaatattattcttactttgtacataaaagttattaaaatgttgactgtagccattccttgctattcagca<br>agttgtttcagttttaaaatgctttaatggaaaacctttggtagtctcacttttgtctttccctggaaaaacttctctctgtgatactatgtgattattt<br>ttgaagtgataatgttactg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intron:SBF2:NM:030962:6/40	
0	chr8	77337387	77338425	2000094	0	-	Melanesian110; RIP_L1_chr8_077_01	GTTTAGTGGTAGATACAGAC	AACATGTGGATTCACTTAGG	LINE	L1	L1HS	gagctgtaaatccaccaagaactttctctgacagcttttatgctgaaaacctccacggatgtttcattttgagagacagtgtagtgtagttaagagcatg<br>gattctagagttgatctgcttgtgtttaatttcaagatccactatttatttgctgcacgtccttgctcaacttacttacttactctctctgttcttctat<br>ttcctcatcttcagatggcggtaatattatctacctcatagttgaggtattaaattagttgatacaggcaggacacttatgacagtacatggcatatagc<br>aaatatttacatagcacctactagtattatttaccagcctttagcttaaattaataccagtcatatttatgaaataccagtccccttccttgatt<font color="green"><u>AAAAA<br></u></font><font color="red">GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGAAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA</u></font>ccagctccccatacatctagttaacaacccaaagtctgtatctaccactaaacatg<br>gcaacttagtcatttaccaacttaggttcacattcagtggaaagaaaataagtgataaggtaaagtttaggaagaactgacccacttatgcctagtgttc<br>cattattggagtgctaagaatgtgagagttttttatatcctgctgctcaaggttattaccaaggtctgattttttcactcatgtaaaagttcaaaaaatg<br>gcaacctctggcataaatgggttaataatagccagggacaaaggtgatggacgcagatgcaggagatcaagtgctatttttggcacaaagttactcactg<br>tctccgggtgatactctgttgagattacctggtcactga	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr4	18194454	18194455	2000095	0	+	Melanesian111; RIP_L1_chr4_017_01	GAAATGCACTACAAAGCATG	AGTCTTAATACACAGCCAAG	LINE	L1	Ta-1	cattcagagcctcattcctggctcttagctcttattgctaggagggctcttatttgccctcttagcaaagcttttgaatctacagggcaacctgaagatt<br>aaggggaagataaacctcattcattttcccagaattttatctcttcacatgtaaaaggggcacagggtcatgaaatagcctgacatggggcagggatggc<br>tttctccaacagggacattagtacctcttgggcttccagaaatgcactacaaagcatggagaggaaagaataaaggcaataaaagaaatgagcaatcaat<br>ttttatcacctggttaagtaatctaaactttttaagcacatactttataggtacatgtatgtatagtaaaaagttttcttcaaatttcaaggtgacactc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atgattaaaatattaagcttgaggtggactatttaagcctctccctccagcccctgaaggtacctgctggtgcttttctg<br>ctattaggtgtacatagtggatgtcttgcaaaaaaactggataaggaaattgttttaaactgcttggctgtgtattaagacttaattcgctgctccctct<br>tgaattaaatcctctagtttatcaaatggctaaagcccaatctgtctaaaagagggagctggctgtgctacaagaatttatgtttccatcctcccaagtc<br>ccatctgtgccccggatgtcacctggagagatggtgtttggaagagcaaggcagggacaggccaaggacaaaacgtggatgagtcaagcaggagccatca<br>gcagggagcaagccctcttc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr9	72777541	72777542	2000096	0	+	Melanesian112; RIP_L1_chr9_070_01	TTGATTTGACTTCACAGCAC	AGCAAATGCTCCTCATAGTA	LINE	L1	Ta-1	ccagtgtttagttctttaacacaaacagtccttttgaactatataacaaagatttgatttgatttgacttcacagcacccaacaaaatttatttcctcca<br>tttcctggcaaaattctattcattatatttggtagttgttaaactataacatcctataaagtgaaaagcaataaccctgattattttaaaacctatcttg<br>atttggtttgagaacatgaattcctgacatacctgattctctactttttctttcctgggtacttttgttttgttttgtttttttaagacaggatctcact<br>ctgtcacccaggctggagtgcagtgatgtgatcacagttcactgcagcctcaacctcccgggccgaggtgatccttccacctcaacctcctgagtaactg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gaactacaggtgtacaccaccgtgcccagctaattttttatacttttagtagagagggggttttgccatgttgctcaggc<br>tggtctcgaactggctgcaatctgcctgccttggcctcccaaagtgttgggaacaggcatgagccatggcacctggactcgtgggtactttaaccaggaa<br>cttttatgaactttgacaggcctaggggcagtctgaccccttggactaacacaaccttgtaggtgggtttccacacagacctcctcctaatcaaccaccc<br>ccctcaaaaaaaaaaaaaaactttagaagagacttaaaattatatactatgaggagcatttgctcagtgaccttttaggttctgctgcctgtcattatgt<br>tgtttctagagagcagatca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intron:MAMDC2:NM:153267:9/14	
0	chrX	81096654	81102690	2000097	0	+	Pygmy113; RIP_L1_chrX_080_01;AC209313	AGGTTTGTTTCCAAGTATTG;NA	GCATTTTCAGTCTTGTAGAA;NA	LINE	L1	L1HS	cacaaagatgtttgaagttttatttccatttgagcatttctctatatacattgattaatatgcattttcagtcttgtagaaaatgccaactgaggttaac<br>aactgccccggttgttatctttgtacccccaagcaactcaagtaacctattgtagatatagtcaattggcactcagtattcatcccaaccactttctggt<br>gtgcaatcctatattacagaggctggaaatttaaaaataatttataaacaacagtaagatagcactacctattagactgattaaaatctgaaaattgaga<br>attaacaattactgacaagaatgtagacagaaacccttatttatttatttattttttgcgggaatgcaaaatgttatggctacatt<font color="green"><u>AGAAGGCAATTTGG<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCTTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTAAGAACGGGCAGACTACCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGATCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTCAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCTGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCCTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGCATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATAAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACGCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAACA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAAGTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCATTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGTCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCCTCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGTTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGGCAATTTGG</u></font>cagtttcttataaattcaacattatcttaccatatgacccaacattccc<br>atgctcctatgtatttatgcaaggtaattgaaaacttaagtctacaaaaaaaactgaaaataaaacctattagtagtatttttattctttattaccaaaa<br>actggaagcaaccaggatatcctttagtaggtgagtgaaattggaggtattgaatgctattcaataataaataggaatgaactatctatgaaatggactg<br>ccactgagtaataaaaaagaataaactatcaatccacataaaaatcactgaatcttaaatgcatatttctaagtaaaaaaagacagcctgaaaattctac<br>attctctatgatttcattcatgtcattctggaaaagg	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr8	107559498	107559499	2000098	0	-	Pygmy114; RIP_L1_chr8_107_01	ATACCTCTGGCATGTAATTC	TGTTAAGTAGTCGTTTAACC	LINE	L1	Ta-1	tgtacaaaaattagctgggcatggtcatgtgcacctgttatcccagctgtttgggaggctgggcagaagaatcgcttggactcgggaggcagaggttaca<br>gtcagctgagattgcgccattgcattccagcctgggcaacagagtttcactctgtctcaaaaaaaaaaaaaaaaaaagaaagaaagaaaggaaattctaa<br>cacattgtacaaaatggatgaaccttgaagatattatactaactgaataagccagttacaaatgaacaaatgctgggtgagtccacttctatgaggtacc<br>tagaatagtgaaattcaaggacagaaaatagaatgatggttgccagtgtctggagggagcgggaatggggagtttaatgggcacaaagtttcaattttgc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aagatgaaaatgttctggagatgaatggtggcgatgtgtacttcatgccactgaactgttcacttaaaaatggttaaaat<br>gggctgggtatggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcatgaggtcaggaggtcaagaccatcctggccaacatg<br>gtgaaacccggtctctactaaaaatacaaaaattagctaggcgtggtggtgcacacttgtaatcccagctacttggtaggctgaggcaggagaattgctt<br>aaaaccaaaggcggaggttgcagtgagccgagattgcatcactgcactccagcctggcgacatagtgagactccgtctaaaaaataaaaacaaacaggtt<br>aaaatagtaaatttcatgtt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr8	131041214	131041215	2000099	0	-	Pygmy115; RIP_L1_chr8_131_01	CAGTGCCTACTGTTAAATGA	CTGTCTTTAGGCATATTCAC	LINE	L1	Ta-1	tggaaatctgtattttaaacaggtactccagggggttctgatgtaagtggctctgggatcatgttctgggaaaacttagttttctcatctgtaaaatgag<br>aatagcaataaaactcaaaagtgttgatagaagcattaaatgtaattaatttcataatacacatgttagaaagaacataggattgagggtctgcactgga<br>gggctttagtcctaaatctgtctctaacttgctctgtggccttctggaaggcactcaacctttctgtgattcaatttccttgtgtgcaaatggaagggaa<br>tggcgctgctttctctctatcacgggattgttaggcaaaagcgctgaagacaatggctgtggaaatcctttgaggagtaggaagtgctaatcttatgaaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cacagtcccgtggaaaatcaagcaggcagcaaagcagggacacatgaaacccactcaacaggtatttaggatttcaggga<br>ggactggagaccaggcagtcttgatgtggcgtggccagggaacatccttggggagctggggaaccttcttccacatggaagaaaagagcaaatgggctga<br>gtgcggtggctcgtgcctgtaatcccagcactttgggaggccgaagtgggcggatcacctgagatcaggagttcgagaccagcctggctaacacggtgaa<br>accccatctctgctaaaaatacaaaaattagccaggtgtggtggcggtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatggcttgaac<br>acgggaggcagaggttacag	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr2	4781311	4787356	2000100	0	+	Pygmy116; RIP_L1_chr2_004_01;AC215718	CGTCCAAGAAATCATTAGTG;NA	TGCCCTTAACTGAACAGTTT;NA	LINE	L1	L1HS	gtagctcagactacaggcgcccgccactacgcccggctaatttttttctattttttagaagagacggggtttcaccgtgttagccaggatggtctcgatc<br>tgctgacctcgtgatcctgctcgcctcagcctcccaaagtgctggaattacagcgtgagccaccacgcccggccataattaatgatcttagcttccattt<br>tgggaagctagaggaagaagaccaattaaagactaaagcaagtggaaaaaaagcaataataaaatttagagaagaaatcaatagaactaagaacgggaaa<br>tggagaaaaatcaatgaaaccaaaaacttgttctttttaaaaatcaatcagatagatagacctccagtcaagcaaaacaag<font color="green"><u>AAAAAAAAAAGATACTGCA<br></u></font><font color="red">GAGAGCACCGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCA<br>TCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGC<br>CTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATT<br>GCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCA<br>CAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGGCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTC<br>GAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACC<br>TCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTTCTCAAG<br>TGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGC<br>AGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAG<br>ATAAAACCACAAAGATAGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGC<br>AACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAA<br>GGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCA<br>AGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAA<br>GCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGT<br>GTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTC<br>AGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAA<br>AATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGA<br>GAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAAT<br>ACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTA<br>CCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACA<br>GGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACC<br>CATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACA<br>AAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGA<br>TCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACT<br>TAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAA<br>CTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCC<br>AAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAG<br>AACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGA<br>AATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTA<br>AATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCA<br>GAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAG<br>GATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACC<br>GATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACAT<br>ACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAA<br>GAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAG<br>GGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGA<br>TGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGG<br>GATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAA<br>AAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACA<br>AACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAA<br>CATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGAC<br>GACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTAC<br>AAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCT<br>AGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATT<br>CCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTT<br>TCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGG<br>CATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACA<br>GAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGT<br>GCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGT<br>TAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATG<br>GCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACAT<br>GGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT<br>CAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGA<br>GAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAG<br>AAATAGGAACACTTTTACACTGTTGGTGGGAATGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACC<br>ATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTC<br>ACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAA<br>AAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATT<br>CTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGA<br>TAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCA<br>CATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAGATACTGCA</u></font>aattgttaatatcagaaaagtaaaaaggagctatc<br>actaatgatttcttggacgttaagaagataataacataatattatgactaactctatgaaaacaattttgatcacttcaaggaaatggatctttacaaca<br>aatggcgctagaataattgggtgcctgtaagcatcctgccaccccacaaaactagatccagaccttacacctttcacaaaaatcaactgaatcatacacc<br>tgtatgtaaaatataaaactatgaaacttcttggattaaaaaaaaaagacaatcttaaatttggcaataactttaagatacaataccaagagcacaacat<br>aatccataaaagaaaatactgatacatctgacttcactaaaatctt	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	45/48;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr5	40041812	40041813	2000101	0	-	Pygmy117; RIP_L1_chr5_040_01	GTAAGATTGGAAGTGAAGAC	ACCATATCAATTGGTGGCAT	LINE	L1	Ta-1	tctaacttatccaaagcatcacaacatttttattaatactaaggtctctgttcatttctccattcacaaacattatgataactattttcaaataatattc<br>cattttagtcacctgacatttacagcatgaattgtgtgaattcagctaagaattatttaaaataaacacagtagaaaaaatattgtggcaggttattttt<br>ttaaattggaagtataaccaaacaagcatgctggatcaaatgttgaattcatgctcacctaaaggaaatgtgtgtcttaaagaaaaatctagttagtaaa<br>tctttgtaacagggatacctctctggtatatgtgtgagtccttatgagcaaaaataaataaacaattgattcttgaggaaaaaacatgttttgaaatggg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>agatgcaagtaaagccaaaacaaataccagtgaccaaaaggagttgcgctgtgtgtgactaggaattattataatgctgt<br>aaaatagctcattgttcatcaagcaagacatgagtaattcaaactgactaagcatgttgtttagttaacctggacatgaagctcaagttaaatattatat<br>gtttataaatgtgtttttttgagggcttgctgtggtgcccctcacacagtagatgctgaattaaggctttctgagtagttcatgcaatgaaagtcctttg<br>ggcatgcattataaagttatgtaaaattatttaattctttcacattttaaagagtatgaattcaaaaagacctaatatgaacttcagttctgccgctgtt<br>taatgtctgacattttctga	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr4	7995811	7996893	2000102	0	-	L1HS395;Pygmy118;AF417132; RIP_L1_chr4_008_01	CGAAGTAACCTCTTCAATAC	GGACCTTGATCTTGATGTTT	LINE	L1	L1HS	catggaatttcttctctgtcctcattgagtccatgaggaacccccaaatgaaaggcccccggagaagcatcttttgctcagaagtgaggtccccggagag<br>agcgggtgggcagttctgtgcacagaacctgccttgcccctggaggcatggtccttgctacagacatgtggccttgtgagccaccttcccctcggaggcc<br>tcgtgggcagcttggaagctcccatgagtgaatgtgggcatctggccctgtacctggccgatctccgccaccagggcccagtactggggtgacaccccca<br>gatgaggcaggtgtgagccatgctctttaaggccccataggctagtggaaagacagacagtttagggacccaggacaggtctttt<font color="green"><u>AAGAATGCTTCCCTG<br></u></font><font color="red">ACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCAT<br>GTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGT<br>TTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAG<br>TTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCAGG<br>AAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGA<br>TTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACAT<br>GCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACAT<br>ATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCG<br>CAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGAC<br>TGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTAT<br>ACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGCTTCCCTG</u></font>g<br>gtgtggagggtcctgcccctccagggtccaggctctgccccttcctttccaaaatgcaaccacaccacctttgagccaggcaggcgttcacttcctccct<br>gctttcccatcacgtggtattgaaaaggttacttcggaggtctaaaactcccagcaagctcccaggcccacccagggccagccagggacatgagtgatgg<br>agggagctcggtgggggctggaaaaggctgccccctcctgacagccccagcgagccttgccccacaggggaatccagagttcattgtctcagaccagccc<br>tctattatttcacgagaagctagaaatttggattttaatatgaagccccccaattgcaagcaactcaggattttttttatttat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	NA	61	1218	119	NA	intron:ABLIM2:NM:001130087:14/17	
0	chr8	137223526	137223527	2000103	0	-	Pygmy119; RIP_L1_chr8_137_01	GGAAGGATATTATGGGAAAC	ATCCAAGGATTCAAACACAC	LINE	L1	Ta-1	gttccttttatatatgcatagttctgttaagcagtactcagctatttcctgcatttattttattactttggcaaggaggaaattatttcaaacatgggta<br>gaatcctgcatcctcacatggtctaacctactttttaaaatgggtgaatacttaagagttcgcctataattctcagcccaaatccaaggattcaaacaca<br>caaaggcttccaaaaagtaaaatgttctaatttatttattttcccatatggagcagaaattgtgtgccacaaaacctccattcataacttttgagcttat<br>ttgaacactaagatacatatttcactatattctctaattaaactgaacaaattttttctgaaatagagagggttttcattggcatgttgcaagctttacc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgttatcttcccttattgcaaagtgtataatttgtcttctcagcaatggcacatatatcttaatgtgacttatgttagaa<br>aaatagcccatcatcagagaatattaattgctcttgttttctccaaaaagagaggaaaaaagtggtattcattgcaagagcagattcatcttcaggtttt<br>aaagggaacttaatgcaatgtttcccataatatcattccaataaatgttaggccctagaatccttccaagtcgccagttctgtttctccattattcattt<br>acaaaaaacccttctctgtagacagtcagattgtctccattttctagattgtctccattaagtacttatttttgtctgaatttctacctttgaaagagtt<br>ataacatgttatttttgagt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr13	61221098	61221099	2000104	0	-	Pygmy120; RIP_L1_chr13_060_02	GGACTGATTAATCTCTCATC	TTTCAGAACGAGCAGTTATC	LINE	L1	Ta-1	aatacttccacaaatgaaaatgtatgattcctagcactgcctctacccacagtctgtgggagggcaacatcaaaaagccactgggtgctcattaaaggct<br>gcccttagaaaataagaaaccattctccaccagcccacagcaaatagaaagaccaagcaatgtcttcaagggtttcagaacgagcagttatccagccagc<br>cagcagcaaccgcctctcaaatgggaatgtgcatttggcctccaataaagagattctgtgtacttgatgcagcgaattatattagagtagaaacgcggct<br>ctggttgtggctgtttttcttccttagaaaagccaggctgggaatgtgtaggtgtaaagcaattaaccttttaatacaaacatggagattggagctagca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttgacccaggaaagagctaaatccattcccttgccaagatgagaagagccactgaagcatccctagcaactctgtccaca<br>gaaaggaagagcctcttagggaacactggggtgtcgcatcacaatcagccagctcaatctcagtccccacacactcccacagagctctgggcatgcatgc<br>gacatttacaggttgaaataggagcacagatgagagattaatcagtcctggggcagggctgtggtgtgacaaaagcatggcccctctggattgaaaaagg<br>aagtgaaaatattaaagtaagctgaccaaatgaggcacggttaatagaaaagatttgttcctctgtttattcaatttctatatatcagagacttggtatt<br>aggagtataatagcagagga	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr4	66809661	66809662	2000105	0	-	Pygmy121; RIP_L1_chr4_066_01	AGTAGTCTTCATCGCAATTG	CATCCTTTCCACTGATATAG	LINE	L1	Ta-1	ttgctatgagatcaggttgcaatacatattcttgaacccataatttttggtggaacccataaatttcaacatttcgttttttatttttattttattttta<br>ttattttaaatgtattgcttctttagaaacctgtggcataatttaaaatatttgtgaaatttttaaatatcttaccactattgctttctaattaaatttt<br>attttgggctacatgaaatatcaattttttaaatcattgagagttatttttattgtcaagcatatagtatatcctggtaaaaattctttgcacacttgag<br>acaacaggtgctctaaatttgttaggtttaatcttctataagtatcaattaggtaaatatggataaaacgctgttcaaatagtttatagtcttgctgatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tattttgtattttttatttcaattacatgtattttaaccttgactgtggaattgtttattcttcctttaattctattagt<br>ttttcagttctatgttttgaagatatattattatgcgcaaatgtattttttaactgtgtcttaacatttggtcattttacaaaatattcctttttcttac<br>caacaataatgattgttatgaactctactgcttttgatattattatagatattttatttttcatatgactatattttataattatgatatttcatgcttt<br>gattctcatcttgagtctttaatatttagtgtacaactattatagacaggatacacttgagtcgtgatgtttttgtccaatattaaaatctctgcctttt<br>aatttgtatgtttatcaata	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr10	59145995	59145996	2000106	0	+	Pygmy122; RIP_L1_chr10_058_01	CTCTAAGCACAGTAACTACT	ATAGCCTTGAGTCGATAAAG	LINE	L1	Ta-1	gaagggccatgttatcagtataaattttgccagctccaatatagtatatactcttttgttaatctcacattaatcagtctattgacaattgttattcagg<br>aacaaataaataaaagtatataatagttggattaccagcacaatgtaggcttagacatgttccacagaggataagtcaattattaatatttcacttcttt<br>gtttttcacgctgatttcaaggaaggatacaagatatacaatatattatacatcttaattcaataatcacctttgaaaatacacatacaaaatgaaatcc<br>aacttataaatatttagaaataataaatgtttgtgaaattcagttttccatgttgcttttggttaagaaagtaaaatatagtagaaattgatggaaaagt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gtacataagggaaaaataaaagtgtattagagagaaataaaaagggatgaaaaacagggaactagaaataaaatcagtct<br>ttatattatagtttgaatgtttagaatctccttgtaatcttcaatggtcaggactaaagactaatacttatttaccagaggcatttgcaaatattttgtg<br>ccaggaatgagtctctaaaatacttgcttagacatttatgtgttacacagagaccaaaagaaaaaaaataaaatatatgattttttccattattcatcca<br>ttcacccatgtgtctgtgtgtctatccatctattactttctaaagttccattagagtgttttcagagagtggataaatgactacctggcttatttttttt<br>acaaagcctgtgtgcttctt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intergenic	
0	chr4	147225141	147225142	2000107	0	-	Pygmy123; RIP_L1_chr4_147_01	TGTTTGTGACCATGTAATTG	TCCTGTTTAGTATTTGCAGG	LINE	L1	Ta-1	ccaacaacagacatctagcaagtctttaccttattctgcaacttttgataaggtctccgtgtttatgaccattgttgggaacaagcatctgtctttggtt<br>ggtgtctttatagactcctccaacagcagttatgtttgtgaccatgtaattgataaacaatttaatcctattatctcttaaagtttatcttagaatattt<br>agggtttactttgtcattcttattcaattggactgataggaattctattttaacttcttataacaagttagtagtaagcatataagcatacaaattgtaa<br>aacaagtggattttttttgttttctatgaaatcataggatgccacagtattggagtatagaatttaatgcacaactaaagtgaacaagtcttaggaaagc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>agtacattaagagcaactagattctagacttatttctgccttttatttgcagtgttactatgggcaagttatttaatctc<br>cctagctctaggttcataatttattaaatattatgacaataatatctatcgtaaagggttgttgtaaagattaactgaaatatgcatgcctgtaaacttc<br>ttgtcatagaacctaacacaggtaagtgctctgtagcttctatcatcataatcattattaccaaattccctgcaaatactaaacaggaaacaagtctttg<br>aaatattgaatataaaaaatgtatgtataggctgggctcggtggctcacgcctataatcccagcactttgcaaggctgagatgggcggatcacctgaggt<br>caggagttcgtgaccagcct	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	45/48	NA	NA	NA	intron:SLC10A7:NM:001029998:7/12	
0	chr2	116244658	116246472	2000108	0	+	Pygmy124; RIP_L1_chr2_115_01	TAGCCATACACTCTAAAAGG	CGTGTGAAAATTGCTGCTAT	LINE	L1	L1HS	atgctactattctgcaaacaacccttctggtgggaaaatatatttaaaattctagagagagattttattttcctcttatgctatctttttgcaaataatc<br>caaagaatgaaatggtcgtgtgaaaattgctgctattcacattttagctacaaatcagaaaaacatcatttagttgagtggctatcaactgctccattat<br>ctagcctgaaaaaggctctttatcacaggaagtaccattcataggatcggcacttccacaagaattaataatgattacttacaattatgatgacttttaa<br>ataaaaacgaactttattctggttactttttaggtaaatgcttttattttggatatctaactttatcttatttaccagggatttgattcatttttt<font color="green"><u>AAAA<br></u></font><font color="red">CAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAG<br>GACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATA<br>TCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGCCTTTCTTCACAGAATTGGAAAAAACTACTTT<br>AAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATAC<br>TACAAGGCTACAGTAGCCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCT<br>ACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAG<br>AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAAACCTAAAACCATAAAAACCCTAGAA<br>GAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGG<br>ATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATC<br>TGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGA<br>CACTTCTCAAAACAAGACATTTATACAGCCAAAAAACACATGAAAAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGAT<br>ACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTG<br>GGACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGT<br>ATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCA<br>AATGTCCAACAGTGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGG<br>GACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATG<br>AGATCACATGGACACAGGAAGGGGAATATCACACTCCTGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAG<br>ATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAA</u></font>tatgtatctctcatgccatgttgtaaaacaaacaaacaaagaaacaaaaaacataccttttagagtgtatggctattttgg<br>aaatccaaaagaacagtcttttagttacattgcaatgatcggtgattaacgtttaaaatatagtaagtaaaagatatcttatttgaatgaggcaaacaat<br>taataggctaacacagattccagcaaactttttatttaaagaaccagagggtaaatatttaaggctttgcgggccatattttctctgttgcaactactca<br>actatgctgttatagtgcataagcagccatgagcaataaatagatgtagctgtgttctttacaaaaacagttcttagaaagccagattagcccaatgctg<br>tagtttatggacccc	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:DPP10:NM:020868:3/26	
0	chr15	83551636	83557670	2000109	0	-	L1HS516;Pygmy125;AC044907; RIP_L1_chr15_081_01;AC203593	CTCATGTCTTTAGACAACAG;NA	ATGTCCTCATTGTGTTCTAC;NA	LINE	L1	L1HS	agaccacttaggaatggatgcacctgggctgggggagtatgaacacttcctgatgtcctcattgtgttctaccacactgggtcagccccactttgtttta<br>ggcctttgatcccaaatgttgatctgaaccatgatgacaggtggtcagatgcgtttagcttttggggctgtgtcttagctcatgggctgcacctctgtga<br>ctttgggcaggtctagtgcctgagtcctgcctctctctgttggctgggccacatcaagtatattactttgagcttctgagtggtacttctgggccattcg<br>ttcctctcaaagcaggaggctgttgtgggctggaaggggaagccgcctccactcctccccagggaaggagtggatgtgtttcagt<font color="green"><u>AAGAAGTGGCTGGTG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCTGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGATCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAATCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACCAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAGTCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCAAAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ACGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCACTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGATGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGCAGTGGCTGGTG</u></font>tagaatggactcagctcattttgagcaaacgccacatcagattcagcttc<br>tgtgtaaactgtgggcagccaaagagcacaggctctttgagaaggaaagctgtggccaacagcttcagcagctgtcattccatgccaggcacagccagct<br>cctctgccctgtccaagcatgtgtcacgctctacctggggagggatgcatggacagcctctcctccttctggaagcagttggtgctactcatctcaggaa<br>gatctgtactcagacctgttctttattcttaaaacacgaagacatttccttcttccccgggacaatgtttcatgtgtcagttccagctgttgtctaaaga<br>catgagtgggtgggaaaacttcagtgtgttgcctc	Other;OTHER	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6151;NA	101;NA	NA;NA	intron:HOMER2:NM:004839:2/9;intron:HOMER2:NM:004839:2/9	
0	chr14	30854625	30854626	2000110	0	+	Pygmy126; RIP_L1_chr14_029_01	GTCCAATATGCCATAAGTAG	CCTCTGTATTCAATGATTCC	LINE	L1	Ta-1	gataaagatattgacaaattatagatttagacaggaattgatttagatgtagatataggcagttggatttgtggctcccgagttcaagagatgaggtttt<br>agctggagaaagtgtggagaaatctgttctctccagaagggtggttgaaacaatggggatgtaggtgagatcagcctgtaggagtatgtgaagaaagggg<br>ttttacagcctttgtttttaatccactccgtaattcatcaatttgttaacctcctctgtattcaatgattcctaaatatctactccactttcacacttgg<br>agtcaatattatttcctctcatttggtgctcctattggtcaagggaacctccaaaagcccacacaagccatgggaagtaagatccactataaatatgtcc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tattataatgaatttatttgttatagttctactgtgaaggcttaagattaccaaatgactatctccttagaagtataaag<br>caagcatagtaagctaagagtcagaatccccttttgtcaactctgacactacttatggcatattggacaaatttttgcaatagctggttactgaggttga<br>tgctctcattatgaatacagtacaatgtattgttttgctctttaagcaatcttatatacacagacatgaaattatcaaaaatgcttttaatccatttcag<br>tgcatgtattataatacactaaatatatttccttttttcatcacagaaagtcaaaagatctgtttttcttgtagtattcataaatgaccttaaaactgac<br>ccacatataacctactaatt	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr10	117385182	117385183	2000111	0	+	Pygmy128; RIP_L1_chr10_117_01	CTTTATACTGACAGAGGAAC	TTTCTTGGCATAGTTGCTTG	LINE	L1	Ta-1	ttgtatggatgaaactgaaaatggaagagttgtcactgtaaattttttgagctgatagaaatttctgatggaattttttactttggaaattttcaaaaat<br>actaagaagcaaataataatttgtatttccacactcataatttaatgctattaatttcttggcatagttgcttgtagttttataccttttttgttaagaa<br>aaatcactattgttgctgaaaaatattacacatgtgtattgaaaatattcaaacaaaaaagtttagaaaagaaagaaaaaatagaccatgaatattctat<br>ctggaaagttttatccataacattctagaaacacctttgcaggtgttttatctgtacataaatacagaaaaatgagggttcaaagaaaggaaacttcaca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cattcagtccctgagttcctagaactccattcatgcaatttaatcaagaacctattcccagaactccattcatgcaattt<br>aatcaagaacctagaattggatgccaaggcgcataggaatgaccctatatgcttatatttccaacctcaatgaacaaactcttctttctctagatgacat<br>ttccaatcctccaaatctaagcccctcaagcagccccaacttgttcgttcctctgtcagtataaagattatccttgaatgcatacccttacttaaacaat<br>cctcacactttccccctcatctcctgaattttctccagcctgccttgcagagtaaatattttactaataataatttgtactacatggtatatctccatgc<br>cccctgaaactggtattgac	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:ATRNL1:NM:207303:26/29	
0	chr4	167677049	167683067	2000112	0	+	Pygmy129;L1HS118; RIP_L1_chr4_168_01;AC216081	GAAAATGCCAGAAATACCTC;NA	TCTAAGTGCAATTCTCTCAG;NA	LINE	L1	L1HS	aactattttaaaaatttgctttcaacaattcttattttgagggattcagtgagctctcatatgtatgttgcttatctagttgttgtttaattttctcttt<br>tctactcattacaagtgaaagtaaactaataactcagttatttgcatggaaaagaggatgtattggagacatggggacttatgaaaacagtatcaaaaag<br>atgtaatcttcaacaacagggtttgaagagtagtttaaacatttctaagtgcaattctctcagattttgtagctaattttatgttctagtaatacaaaat<br>ctattttgatagttttttttcttgttatactttgaattataaaaataatagaaataaaaatgtagacacttaggattaaaaatt<font color="green"><u>AAATAAGAGATTTGGG<br></u></font><font color="red">ACAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGT<br>GCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTT<br>CCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCAGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCA<br>CCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAA<br>CGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAG<br>GCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCT<br>TTGAAGAGAGCAGTAGTTCTCCCAGCACGCAGATGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCA<br>GCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAA<br>AACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACA<br>GAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGAT<br>TTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAA<br>ATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAG<br>AAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGA<br>ATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAA<br>CCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACA<br>AAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGT<br>CGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTA<br>AAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGA<br>TTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATG<br>TAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAA<br>CTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCA<br>TCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTC<br>TCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCC<br>TAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGA<br>CTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATA<br>GACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAG<br>CTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAG<br>CCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAACGCAGAAATAAAGATGTTCTTTGAAACCAACAAG<br>AACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGAT<br>CCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGC<br>AGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCA<br>AGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCA<br>GAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGA<br>AGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCC<br>GAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGG<br>CCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAA<br>AATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAA<br>TCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCT<br>TCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGG<br>GCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCA<br>ATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCA<br>TCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAA<br>CAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAG<br>GACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATA<br>TCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTT<br>AAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATAC<br>TACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCT<br>ACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAG<br>AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAA<br>GAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGCAACAAAAGACAAAATTGACAAATGGGA<br>TCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACATCATGGGAGAAAATTTTCGCAACCTACTCATCT<br>GACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGAC<br>ACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATA<br>TCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGG<br>GACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGACATCCCATTACTGGGTA<br>TATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGACCCAACCCAA<br>ATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGG<br>ACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGA<br>GATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGA<br>TGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAGATTTGGG</u></font>ggcttgaaaaatttacaatttcacaaacttttgggaatttgttaattttcagaagatatttaatg<br>ctcatatctgtgaatcaccatattagaaaatggtaatacaaaggtaaaagaggtatttctggcattttcataaaagtattaaagaatttcagtgtttttg<br>ttgttgtttaaattctcttgtaaaattgtttatagaatcaaaacagagttatctcactcaaacaaacagtaaacatgaattccttatttcctattttctg<br>tgcaagtgctcaccttggttctggaaatgtaaggttaaaaatgtagattaggtccctattaccttgaagcaaatttttaaaatagtatattttgagatac<br>tgatttaaactattctaat	UCSC;UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	50/48;NA	NA;NA	NA;NA	NA;NA	intron:SPOCK3:NM:016950:8/12;intron:SPOCK3:NM:016950:8/12	
0	chr3	80925314	80926602	2000113	0	-	Pygmy131;3917; RIP_L1_chr3_081_01	CTCAAAATGTTCATGCATAG	GGTAGCTTCAGAAAGTATTC	LINE	L1	L1HS	aaaacacaataggtttaatataatagctgctcaatgggactgagtagtcaaccagggattcttgatattcttgatagatgtgtttgtatgtgcttgtaag<br>ctcctgggcagagaaagaagacatcacaggaataggagttatgaaagattaaaactataatagtaatgcacaacacaattgttatgaaatagattcaaac<br>aataaaggaatctgtggtctacatccacttgcctgcccaaagggaattttgttcttataagatgacatgtacaccaccacatcttgtttcacacagataa<br>acattttatacaggtacacacagaacatacatgtacttatacacatttttacatttatgaggtcattaaatacacatgattgtaacacatgcttt<font color="green"><u>AAAGC<br></u></font><font color="red">AATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAA<br>AATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGC<br>AAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAA<br>CTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAA<br>ACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACAC<br>ATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGT<br>CAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTG<br>GCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGAC<br>ACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGC<br>ACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACT<br>ATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGG<br>GGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAATGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACAT<br>GTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACC</u></font>tttttt<br>tgaaattttgtggaacattctgctttgctgtttataacagttccatgctattctatatcatgacatattatttgaagcctctcctattgatttatattta<br>tattgtttctaaatgtttatagaagcaaaaaaaaaaagaattttttttaaaaacctgcatgtttgtttaacaagaaggtacttttataggaagggtttct<br>cagtattgtatttactatgcatgaacattttgagttttaaggtcagctggttaatgatggatttccttgtagaaatgatataaatttcctggttcaccag<br>cattttatcaaattcctagtttctctgtattttaaaacttttgcaaaagagtgagcaaaacaaaatacttattgttcatatttgctttt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intergenic	
0	chr3	79216354	79216355	2000114	0	-	Pygmy132; RIP_L1_chr3_079_01	ATGATGACAGTCATTACAGG	GGATAGAGGAATAATATTCC	LINE	L1	Ta-1	agtggtgtgaagggaagtaactagttgggacagataaaaaggaaagtgccctcttagaaggcaattgcatagttttatcatttatatgaagacagtagcc<br>ccaaaatgatgacagtcattacaggtgttataaagatataagttataggaatttagaagaaaggaacagtgacattgatttcatgacaaaaatacaatgt<br>ggatgtacacaaagaagttttactagaacagaaggctaaattctctgtgttcctcttgctaaggaagaaattgctgccttgcaacttctggaattttgtt<br>ggcacaagcaaacaaaaatagtgaagagtaaacaaaaaaacacaaaaattttaactgcaagaaaatttactagcgtgagtttagatgctctggatgaatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aggaaatgcttttgtgctattaattttcaaacctaaaagacctttcttcaattttataatcaatattatcagcagtatct<br>tgacctgggaaaaatgaagtgtttggcactggttgtgtcttttaggaaacatgattaggacatgatttgaaattgagtagccagaattctgacagtcttt<br>gttcttaacattggagacacgtggatatgtgcacatcgcctcaggcatagtgaatagcagtagcattaattcagaagcctaagaagatgtctttggaata<br>ttattcctctatccataaaactgttaagtgattcattaattcaacaaatattatgaatcctttactgatttaggcactgataatacattagtgaacaaat<br>taagaaaaatagcggatcaa	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:ROBO1:NM:002941:2/31	
0	chr11	26417678	26417679	2000115	0	+	Pygmy133; RIP_L1_chr11_026_01	GCTATGAGGTTAGATCTTAC	TACATGGTTGTTGATCTCAG	LINE	L1	Ta-1	tggctagccatatacagaaaactgaaactggaccccttccttacaccttatacaaaaattaacgcaagatagattaaagacttaaacgtaagacctaaaa<br>ccataaaaaccctaagaatacctaggcagtaccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaagcaagggcaacaaaagcca<br>aaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaagctatcatcagaatgaacaggcaacttacaggatgggagaaaatttt<br>tgcaatctatccatctgatgcagggctaatatccagaactacaaagaacttaaacaaatttacaagaaaaaaacaaccccctcaaaaagtaggcgaagga<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tatgaacagacacttctcaaaagaagacatttatgcagccaacaaacatatgaaagaaagctcacaatcactggtcatta<br>gagaaatgcaaatcaaaaccacaatgaaataccatctcatgccagttagagtggtgatcattaaaaagtcaggaaacaacagatgctggaggggatgtgg<br>agaaataggaacacttttacactgttggtaggggtgtaaattacttcaaccatttacacttagaagacagtgtggcgatccctcaaggatctagaaccag<br>aaataacatttgacccagcagtcccattactgggtatatacataaagggttataaatcattttactataaagacacgtgcacacatatgtttattgcagc<br>actgttcacaatagcaaaga	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intron:ANO3:NM:031418:1/27	
0	chr1	197500521	197503271	2000116	0	-	L1HS332;Database37;238700; RIP_L1_chr1_194_01;AC231538	AACTGGGATCTATGATCATC;NA	ACAAGAGTTCACATTCTGGT;NA	LINE	L1	L1HS	aagttttggtttttaaaaagttgcttatgaattacccagtcattccaaagaaataggttagatgttttagatccacaaatcttttcagtgtcacaagagt<br>tcacattctggtggaggtacctagcagagacaaagacttttgttttggaagacagaaatttagttttcttcatttagtcttttctgtgctgtttctatta<br>tttgaaatgctcagtctcattaatacctctctcaaagacagcttagtttactagctgttgaacctcattaaaaaaggtgaaaacaggtacaagtggaaat<br>aatatacactcttttcttcctactgtaaggctactgaagagtagcatcactgtcatgttagaactggctcaagtatccaaattctttt<font color="green"><u>AAAAGATTTGTT<br></u></font><font color="red">TTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAG<br>CCCTTTGTCAGATGAGTAGGATGCGAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGT<br>TTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGC<br>CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAG<br>TTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATC<br>AGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTG<br>TAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCA<br>TATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCC<br>ATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCT<br>TGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGT<br>TTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGG<br>GCTGAGACCATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCT<br>CCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTC<br>CAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAGATACGTCCCATCAATACCTAATTTATTGAGAGTT<br>TTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCCTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTA<br>CATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTT<br>TGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCTGGCTTTGGTATCAGA<br>ATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCTTCCTTGTACCTCT<br>GGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAG<br>AAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACC<br>AGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTA<br>GTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATG<br>AGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAAT<br>GATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTACGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAA<br>TTGGAAACCATCAGTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGAC<br>ACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGAAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGT<br>GGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAAT<br>AAAATAAAATAAAAATAAATGAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTTGTT</u></font>atgtggtgaatttaattgcctaaaggcaaatttctgc<br>agggacctttgtgatttttgtaatctagataattttcatgttcctactactatttttcaaacttcaatttttatacagttgaaatagtagaaaaatgccc<br>tagagcagcctcagaagacctggaaaagatggacagttttttgataacagtgaggctgtctgtgtatgtttgtatttacgtgattcatttaaaacttcca<br>acaatccagtcagggcaagaattattatccgcgtttttcagatttagaaacaaatggagactaataaatgtgcccagagttctacaagtaataaatagca<br>gaataggaattaaaaagcaggcagactgattctagaacttaggtacctaac	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	58;NA	2850;NA	87;NA	NA;NA	intron:DENND1B:NM:001142795:19/22;intron:DENND1B:NM:001142795:19/22	
0	chr6	110476746	110479767	2000117	0	-	Druze51; RIP_L1_chr6_110_01	ACCCTGAAATAATCAGACTC	AGTAGCTGGTTCTAATCTTC	LINE	L1	L1HS	ggttaataataataattactagcatagaaaaatagaactctgaattcagaggaaggactaactcaccatgaactgggtttatcaagaaggttttcatggc<br>aaaggaaggattcattcaggacattgaaggattaattggattgagctagatagggaagaaagtagacatccattctaaatagaatagtagctggttctaa<br>tcttcattcttaactccaacatgaatcatatctttttttaaaaaaaattgctatgcttatggagttaacattgactcagacaagtcacctgagtgaatta<br>ctcacttattttatcttggggtcaaagaagctcatgtgagggttcctcattccctaagattctccttttatataagattgt<font color="green"><u>AAACAAGAAGGCACTTTAG<br></u></font><font color="red">GGGAAGAGCCAAGATGGCCGAATAGGATCCTCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCA<br>AGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCA<br>GAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGA<br>AGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCT<br>GAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGG<br>CCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAA<br>AATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAA<br>TCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCT<br>TCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGG<br>GCAAAAACTGGAAGCATTCCCTTTGGAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCA<br>ATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCA<br>TCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAA<br>CAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGAAATCCAACTTACAAGGGATGTGAAG<br>GACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATA<br>TCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTT<br>AAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATAC<br>TACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCT<br>ACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAG<br>AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAA<br>GAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGG<br>ATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATC<br>TGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGA<br>CACTTCTCAAAAGAAGACATTCATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGAT<br>ATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTG<br>GGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGT<br>ATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCA<br>AATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGG<br>GACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATG<br>AGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAG<br>ATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAAGGCACTTTAG</u></font>aaataatgtagtcctacctgtaatctcttctagaggcaagtaatttccttattggaaat<br>gtctggtataaaaagattttttttctgttcaaattaaatgtcttctcatcactttaagctattgatcctagatttgctttcaaagaactctcttaatctc<br>attccaagccaggaaatgataatggcaaaatagtttaaccaaatctacctttttagtttctgttccagtttgtgcttatagccgataaaaagcatactta<br>ggtgtacattatgatggtatattggtatatcgaggccaaaaataatgcttaagagttactgaattagtaagagccctgatacttagggagaactatagat<br>taagtaaatctatattgattta	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:WASF1:NM:003931:3/11	
0	chr6	162181236	162181237	2000118	0	+	Druze59; RIP_L1_chr6_162_01	TGATGTGACTCAGTTGACAT	GGTCACAATGTCAATTGCTA	LINE	L1	Ta-1	tgggttttagggttccccagatttagaaatatgtacacctgaacataaaactgggttcagttttctgaagtctgaccaatgagctgacatactgatagct<br>cactgaggtaaaagaagctttgtgatacaactgaaggatgtttatactttcagtgaacgaggcatagcagcctaaatgcaaccgattgaaccacaaataa<br>tacttctcaatcaaatggccttttatctttcttgtctctaaatatacccttttaccacacagctcgttcttaaaaaaaaaaaaaatccggtggtcacaat<br>gtcaattgctaactttattttctatttatatcgtccactttatgaatacccttttcctcaatttaattagttagtgtcactcacactttaactgggaaca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttgtaagactgagctgaatttgaaaacaatgccacgatgtcagactgagtcacatcaattttctaactgcccaccacagc<br>cacagcgcaactcaacgacacccacacgggtatctgcgtcctggaattggacttttacatttttattttaatgaaaatgatgtattacatataagtaaaa<br>caacacctttaaagatggaaaagaccctttttttcaagcctcaatttcagttctagtgggacagccaggtgggagggggtccctggagaaactccaacca<br>gcctgccctctgcagtggggaggagcctggcccctcctcctcctgtgtggaacccgagattcaggctgagcgccggaagccgtctagcagggactctggc<br>ctagcgagagtccctgtttc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/45	NA	NA	NA	intron:PARK2:NM:013988:4/9	
0	chr8	18454621	18455944	2000119	0	+	Druze62; RIP_L1_chr8_018_01	CCTTTTATGCTGTACTGAAG	AAACCAGAAAACAGTACTGC	LINE	L1	L1HS	aattgggaaacctagaagaaagggataaattactagaaacctacaatctaccaagatgaattacggagaggtagaaaatctgaatggatctgtaataata<br>aggggattgaatctgtaatgaaaaccctcccaacaaaggaaagtttaggagcagatggcttcaccagtgaattctacctaacagttaaacaactaatgcc<br>aatcattctcaaactgttccaaaaaattgaagaggagggaacacttccaaactcattttatgaggccagcatgaccctgatatcaaaaccagaaaacagt<br>actgcaagaaaactacttgccaacatccattatgagcataaatgcaaaaactctaaacataatgctggcaaactgaattcaacagtacatt<font color="green"><u>AAAAGGATC<br></u></font><font color="red">TACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAACAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTA<br>GAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGA<br>AGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGG<br>GATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCAT<br>CTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAG<br>ACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGA<br>TATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGT<br>GGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGG<br>TATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCC<br>AAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAG<br>GGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTATTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGATC</u></font>atatacaatgaccaagtgagatttatccttgggatgtaaaggtggttcaacatatgaaaatcagtca<br>aagtgataaaacgcattaacagatcaaatgataaaaattacacaaacatctcaatgatgcaggaaagcgatgatattaatatcctttcatgatttgaaaa<br>accctcaaaacagatacagtttcaaatgatcttatatgtagaaaacccaaagattccccaaaaacctattagaataaataaattcagcaaagttgcagga<br>tacaaaatcaaccatcagttccatttctatatgctaacaatgaacaatctgaaaaggaaatgaataataccatttacaacagcatcaaaaactattaaaa<br>aatacttaagaataaacatgatca	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	45/50	NA	NA	NA	intron:PSD3:NM:206909:9/13	
0	chr10	110452962	110452963	2000120	0	+	Druze87; RIP_L1_chr10_110_01	CCATCTTGGAAAGTGATTC	CATAAGTCAATTTCTAGCTC	LINE	L1	Ta-1	aggaagatgactgggtaggaagcaccaggaatctatctcccccttacataacaattaagcttgcagaatctgccttatatgactgttttggatctatgga<br>gtctattaaagccttgaagcttccaagagaaggcttcaacactcagttgtggttaactttggtcaatttcagcttttagctcaacagcagctactacttc<br>cccatgcacagccccatggcaggcaccggtgcatgtgctcctgaagcagcttccatgcatatcgtaggaactggggtgtgggacagcaataaagacctgt<br>cttctaaatattggggatctgtgttctgaactctgattgctgtttctaatcactgaggcctaagccagaggtgagcagctattattgtttcacacccccc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cattaaaacaaacccaattcccttccgttgaatgacgttgaggagattgaaatgtccactgccttttttttttttatcac<br>tttcctttttctctttttcttctttgtggagccaaactacactaggacattgaaaagcaactgcatactttggaacattttaaaaattactgtgcatacc<br>caggcaaaggctcatgctcagaaaacacctgaagagaatttaagtttacacctcaggttgatcatcagcacagagacagcctacagaaattgaaaacaac<br>aagtcctggagaaagaggagaatctgattttcagagctgccacattattagttcagatgtccagttttcaacaacaacaacaaaactacggggcatacaa<br>ttaaattggaaagtgtggcc	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr10	18543811	18543812	2000121	0	+	Druze90; RIP_L1_chr10_018_01	CAAGAGGCATGATCAGATTT	TTTCAGTTCTGTAGAAGCTG	LINE	L1	Ta-1	aataaacaaatgttgccactctcattactgagaaaaaaaaatgattgattgttggtctgaaaaacaaaacaaaaaccaaaaaaaatcccgtacatcaaaa<br>gacaacccagacactttggtgagaaataaaggaaaattagagaaaggttttcagttctgtagaagctggaatgaaatagagtgtgcattttggtggctaa<br>agaagtggagttcagtggaagctgcaagcagccagatagagattttgttcaggaccctaaggagagaaatgaggactggaccaagaaatagaagtacact<br>ggcactgacatgaaaacaaaggtttatcacagatcggattactgaagactgaacttcagaaatgcatggaaatgttcaggaatgagagaacacgggaacg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgtatgtattacattgggtttcattttctgtttctgtccttgcacttacctacttgaattccccaatatctaatagattc<br>attcattttccttatctcccatcttcagctccttagcatgagagcatcatcttttgcttgggtaaaagtacttcctagctgatctccctggcttctctct<br>agccgtcttccaatctgtcttcaactgtcctgccaaagtggattttaaatggcacaaatctgatcatgcctcttgtgggaaagaaatcccactgctctta<br>gtagaaagagaaaagatccccagcgtggccctcatgatcttgcctgataatcacctgcctctctaacctcatcttctcctccctctcttactttattctc<br>caactgcttaagctgggcct	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	50/48	NA	NA	NA	intron:CACNB2:NM:201572:2/14	
0	chr15	100931240	100931241	2000122	0	-	Druze91; RIP_L1_chr15_098_01	AAAGGACAACTCGCTCTTG	GTACTTCCAATACCAAATTG	LINE	L1	Ta-1	attatactcaaaaacattcatgcttctttttataacttacataggttgatgaaccctttgctccatctggtatttattttggtgtaagaaatgaggtaaa<br>taggggtttttaaaaatggtttgctggttgtccccaaggcatttgctgagcatttttttcttttcctttgtgctttgcaatgccactcttaaattatttt<br>gtgtctcttgtctctttctggacttcccattctgtttcaccgaagtacttccaataccaaattgttttaattagtacagccttataataggttttcttat<br>ggttagatcaataatccgtttttcctcttgtctttcccaatattactggcccattcaacatctttatttgatttccaatatttattttattccaagctag<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aaactggatgaattctagtttttgttttttgttaggctcctctcaaaatcccaatggtgtgctattttaagattgcttta<br>aatttatacacttagaagaacggacaatttatcatattgagtattcccatcgaagagcgagttgtcttttcagttaaattctttatctcttagtaaaata<br>gggaattttatttgtatacaccctgaacatttcctttaacatttcacggaggtaattttctctttgattattattgtgaataaaatctttacttcctttt<br>attttttttaatacttagaaaagctattgatttttgtatgatagctgtgagatatgcctctccgctcaagtttctaataggttttcagcaattttggggt<br>tttctatgtatagaaagtca	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr1	74984530	74985253	2000123	0	-	Pygmy130; RIP_L1_chr1_074_01	AATATGGACGATTTAAGGAG	GCTTTGGCTTGACTATAACA	LINE	L1	L1HS	gaaaatggcagtatccaaaggagaaatagctgtaagaacatgctgtccagtcagggcatccagagcagagaaggtggatctgtgctcccacagataggac<br>acccacactgccacagggaccctgtggactattcaatcttcccttcacctctgaatgacacacattataaacttaaagctttggcttgactataacatat<br>cttcattataggtacttgtcctcacattagaaaaatttcatgtataaaatgtaattttcttttaaagatatattctgtggggttattttgtaagactatt<br>tactttataaaaaagattcttagaagtttttatctctattctggctttcttatgattttagtttaaaaatcaattcaaaaattacacttt<font color="green"><u>TAAAGTAAGG<br></u></font><font color="red">CAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATT<br>GTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCA<br>TGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTAGAACCAACCCAAATGTCCAACAATGATAGACTGGA<br>TTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAATATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCAT<br>CATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGG<br>AATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGAAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGC<br>ACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAGGGGA<br>AAAAAAATAAAATAAAATAAAAAA</font><font color="green"><u>TAAAGTAAGG</u></font>taatttgttttaaattgaagactaaatactccttaaataatccatatttgtaaatgttgttttaaa<br>aacacaccctttacttatggaaataaattatataaaagcaaaatatgtgttcaaaacactaatataataattttgagcttaaaaaacagatattgttttg<br>aaaacactattagcgatgcattatgaagcctctgcactgacagtgtgctccccaggcaggcatcaggtgaaacacgggaaccataagcttcgtcacgatt<br>agtagaatccactgagatctgtaagcagtgggaaccatagagccaccctaaaaagaaggcatattgaggtgggagaatcagagatccttgaggtaagaaa<br>agcatctcagaagcaaccaagagt	UCSC	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	48/48	NA	NA	NA	intron:TNNI3K:NM:001112808:25/27	
0	chr6	153029991	153033789	2000124	0	-	52577;Druze95;L1HS461; RIP_L1_chr6_153_01;AC214249	TGAATTCTGTTTCACCTGAA;NA	AAACATCAAGCTAGGATTCC;NA	LINE	L1	L1HS	aaaaatatttaacaaatgtgcaattataatcccccaaacagaggaaagggtggatggagctaaaaacattttgaataaatgaggctgaaatttttcaaaa<br>ttagtgaaacaaattaatctacaaatcaagagtctcagtaacatcaagcagaatatatataaagaactatgcacgtcatagtcaaacagctgaagatcaa<br>aggttaacaaaaaaaacttgaacacagccaaattacaaataataataacattacattcataaaagacaattatttaaatactcacttttaataagacacg<br>gtgatattttaaagtgattttaaaaaagctgtcaactcagaattttatatccagcaaaagtatcccttaagtatagtagtg<font color="green"><u>AAATAAATACTCTTTCAGG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGGGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCAGGAATTGAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTC<br>TCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATG<br>TAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGG<br>AAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACAT<br>ACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCT<br>AACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATA<br>GAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAA<br>AAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACA<br>CCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAAT<br>AGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGT<br>ACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGAT<br>ACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGA<br>ATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCC<br>AGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCT<br>CAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCA<br>TTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGG<br>AAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAA<br>TCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAG<br>AGCCAAATCACGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGA<br>ACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCAT<br>ACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAAC<br>CAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGTTACAGTAA<br>CCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTT<br>TGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGAT<br>CCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTA<br>CCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAA<br>GAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGTGCTAATA<br>TCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAG<br>ACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGT<br>TAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTT<br>CAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCGTTACTGGGTATATACCCAAATGAGT<br>ATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGGT<br>AGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTG<br>GAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACA<br>GGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGG<br>TGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATAAAA</font><font color="green"><u>A<br>AATAAATACTCTTTCAGG</u></font>tgaaacagaattcaaattaatcaccagcacacctacactaaaacatgtgctgaagaaaatccttagtctggggataatgaaa<br>actgggatctttaagaagaaattgagaccatcagaaatagtatcagagtaaatatagaagactcttttccatcaatttctttaaaatatatttttctagc<br>tagagcaaaaattaaaatattttcatatgaaatgtatagtttatatagatttaatatgtaataattataatacaaagaattgggacaggatataaataaa<br>tctattagcttgattgattgatttagtttttaagagattttagagacagggacttactatatcatccaggctggtctcaaagttttgggctcaaatgac	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	48/48;NA	NA;NA	NA;NA	NA;NA	intron:MYCT1:NM:025107:1/2;intron:MYCT1:NM:025107:1/2	
0	chr1	193549641	193549642	2000125	0	+	Druze88;AF417139; RIP_L1_chr1_190_01	GAATCGAGTATTTCTCACTG	TCTTCTCACATGAGGAAACT	LINE	L1	Ta-1	cttctcacatgaggaaactaaagtgaaaacaagctaattaatctccaaattatatcctgaaatgaaagcagatgcacgttactgcaaagcatatctttcc<br>ttggtcctcactgaagttgccttaaggagaggcgtggaagaggccactatggcaatcaatgaacaaaatcatctgtaattttaaatggaaacaaattgat<br>atcccacatgaatggttttctttttccctgcaatacaatcttgacatattacagcaatatcttgaggagtttattttggggattaagtacaaatagcaat<br>gcaaacctgtaaccatagtctagtgcccaaagagaccacattttgtgttgaaataatacacaatagagaaagctgaatgggtaaaataaaatccttcttt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAATGAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aagaaaaataatctcttctctgagttattaaagtttgcagcctccttggttttcgatgagcttatttaaaatctacgggggga<br>aaattagcagcttaaaatgctgacagcatgaaaaaacagtgagaaatactcgattcttcaaggagtccttccttcaccccccaaatagtttgatttttcc<br>tatttatctcctttgtcttttgataaaaagaaaagaaccctttgagaggacaattttgaggtcttaatccatacttctttccagtttatcttttacattc<br>aaaacaaacacctttaaaagaatcctttttggtctggtagtgctaaatgctaagcttaggtatcagcagctaattagcttcacatctggggggattgtca<br>atgaactctatctcctg	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	 TSD unavailable	50/48	NA	NA	NA	intergenic	
0	chr2	181000155	181000156	2000126	0	+	Pygmy127; RIP_L1_chr2_180_01	AGCATAAGCCATATAAGTCG	GAGACATATTGGTAAGAAGC	LINE	L1	Ta-1	tttcccttaagcatttttcacagagatttcccattaggtactctctctttctcctactagtctgtgagtacctagaagactgaatgtatgttgtatttat<br>atttctaactctgaaccagcacagttcctggcacttgttactatgtcattggtacctgttaaataaatgactgactatgctgcatatgaataggcaatac<br>acacaaatggactgggataaaggtgtgagcttctcaggtgtaggctggatggtgttatattaatattctggttgccttgccatgtgttgggcacagaaaa<br>agtgctcaataaatactcattgaatgtacttcttgacaagacttcagcaggctgctcactgcagcctcaacatcccaggttcgagccatcctcccaacta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>agcctcccgagtagctggtactacaagcatgtgctgccacaccctgctaatttttgttttgttttgtagaaacagggttt<br>ctccatgttgcccaggcttgtctcaaactcctgagctcaagcaatccgccagcctcagcctcccaaagtgctgagattacaggtgtgggccactgtgcct<br>ggctcaccaagtaaatttttaaaggatatattaatgttaaagtaaaaagtattctgtaagagattgggaactattttaaaaagagagagattcttactgt<br>agtgaaaatttgtatgtagttccccaaagaataaaatcagcaaaattcccagatgtgttttcagggttctttgaggatttctgatccgaaggaattagaa<br>aggttagaaaatataggtct	Other	<UL><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	48/48	NA	NA	NA	intergenic	
0	chr6	29862913	29920212	2000127	0	+	AC004200; RIP_L1_chr6_030_01	ATTTGCGGCCGCCAGGATGCCATGAAAAATAGCC	GCATTACTGTATCAGCCTGTAAGCG	LINE	L1	L1HS	caaagaggaccaggatgccatgaaaaatagccttggctagaaataggtcatttgatccttggctaattggcatctctctacattctctggtatacaatgt<br>tcaatctgatgtgcaaggcaattgtatctcgcaaagaatttgagaatttgatatgttgctcacattttaccacacatacaagtgaattaaacttttacag<br>aatagaaaaaaccattgtcgagcaaaataaattaaatgaaaagacataaaggaataactagtgatgaaatagcaataagaatggaaaacacaaaagagct<br>gcttttaaagcaatgttagaagcacaaaataactgcatttttcagaatcatactggagtccaaatcacttctaacacatctaatt<font color="green"><u>AAAAAACACAGTGAA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCAACACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGACTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGAGATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATTTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATGATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGGGATGAGCAATGAATAAC<br>ATTTTAGTATAGCTAAGCAATATTTGCATATTTATGTGTAATGTGTTTAAGCAAGTATTGGAAGATATTTATACAAATAATAACATTACCCAAAATTCAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAACACAGTGAA</u></font>agatgttaaactgatcaatggatgcccactgaatacccagtttttgaaaaatcttgttcctagattggagtta<br>accatttccacctaccacatcaaatcaaatcgttgtcgtgatgctaagctagctgtacagacaaagatgtgagacacattttttctaattgcaaagcacc<br>ctgattaggcaaatatttttgtagaagcttgagtaagaaaattggcattttgggcattcttaaacggaattagtaacttctgaggaaaaagaaagatagt<br>tatgattgtaaaggcattattatacggcaccagtcttgggactctttgatctagctactgtattttctcaactttcttgtaactcatcaaagagaacatt<br>aatattaaagac	Other	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr4	112815959	112821995	2000128	0	+	AC004704; RIP_L1_chr4_113_01	ATTTGCGGCCGCGGGTGAAAATCAAATGACCTTGGG	GGAGTCACGATTGGTTTAACGC	LINE	L1	L1HS	gcaaaatagtcttttcaacaaacggtgctggatacttacatgcaaaaacactgaatctagacacaggtattattcccttcacaaaaataaacttaaaatg<br>attaatagagctaaatgtaaaatacaagaatataaaactcctagaaaatgaagtgggtgaaaatcaaatgaccttgggtatgatgatgacattttagata<br>taatgccaagggtatgatccatgaaaaaaataattgataagctgaacttcataaaaaaaaaaaaaaacttctgctctgtgaaagacaatgtcaagaagat<br>aagacaaaccaaagactgggagaaaatattttcaaaagacacatctgctaaaggactgttatccaaaatatataaagaactcttaaa<font color="green"><u>ACTCAACAATAAG<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGCCGCAGGTCAGTGGGTGCGCACACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATTCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGAGTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAGCGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCATCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTATTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACAATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCTAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTAATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAACGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTTTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATTCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACTTGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GATAGGAAGAATGAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTACGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTGAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACCATGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGACACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGCGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>ACTCAACAATAAG</u></font>aaagcacacagcctgattttttaaatgtgccaaaggccttaactgatgcc<br>tctccaaagaagatattcagatagcaaataagcatacaaaaagatgctctaccttgtatgtcatttgggaaatgcaagttaaaacaacaatgtgatacca<br>ctgttacgcaattgatgaacctacattgacacatcatgatcacccaaaagtgagcagaaaggtaaacaaagcctctttcttgtgaatgtgaagaaatgag<br>agtaggataaagagtgtaaaagtattaagaaaagaattactaaaacaaatcaagctttccctggatcacttcctatgaagacatatacaattcctctttt<br>taaaagaaaatttacctaaaaccacaatgcatgtata	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr12	3608326	3614396	2000129	0	-	AC005908; RIP_L1_chr12_003_01	ATTTGCGGCCGCTCGAAGTCCTAAACCCCCAGTACC	ATAGACACATCATCTGGTCTCTGCC	LINE	L1	L1HS	gcaaaacagaattaataagagttgctttgcaatgttgttgagtaaattaaataaggcaatgtttacaaagtgactgacacagcacccaacccataatatg<br>tatgctaaaatggtagctcttgctatagtgattgctactgcacaaggaaaaagccatgataaagaccctgggaagccagtgggtgcagtgtgcagctgag<br>tgagaagcaggaaagagataagggagagagaccactttctcggacttgcaactattctgaggccattcatcagccatttgctatatggcgggcaccgtgt<br>tgagtaacatcatgggttgaattgtgtcatccaaaaacatgtgtcgaagtcctaaacccccagtacctgtgacagtgagctcatt<font color="green"><u>TAAAAATAGGGTCTT<br></u></font><font color="red">GGGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCA<br>GGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTC<br>TCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGGAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGACACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACA<br>TTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCA<br>AGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCC<br>TTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCA<br>CAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGT<br>GTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCTAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAAAGGAAAAAAAAAATAAATAAATAAATAAAAA</font><font color="green"><u>TAAAAATAGGGTCTT</u></font>tgcagatgttatca<br>agttaagatgaagtcatattggattagagtggcccctaatccaacaagactgttgtccttataagaagacgtatagacacacacaggaaagaatgccctg<br>tgaagatgaaggcagagaccagatgatgtgtctatagccaaggaaggctgagcatcgttggccaccacgggaaaccagaagaaaggcaaggaacagattc<br>tccatgaagacttcaagaggaaccaaccctgctggcatctggatttcagacttctggcttccagaactgtggaagaagacatctcgttgttttaaagcca<br>cccagtttgtggtactttattacagcagacctaggagggtaatacaggtgatgaaactacaaagataaatt	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:PRMT8:NM:019854:1/10	
0	chr7	30478863	30484914	2000130	0	+	AC006027;L1HS46; RIP_L1_chr7_030_01	ATTTGCGGCCGCAGCAATCCCACTGCTGGATATATAC	GAAACAGACACTGGCTTGCTTCTATG	LINE	L1	L1HS	agagaagggagagaaagtgagagagcttaactgagcttaaatgttaacaagaatcattttctgagaagataatttttattatttttcatagtttccaaat<br>aaaattacctgtgttccttttgtaatccaataaaaattataatgaaacaaaaagctttaaaaagcctcaagaatcaaaaccacaatgagacaggacctca<br>cactcattaggatgggtactgtcaaaaagagaaaatagcaagtgttggcaaggatgtggagaaactagaatgaactgttggtgggaacataaaatggtgc<br>tgctgccgtggaaaacagtatgatgattcttcaaaaaattaaaaattaccatgtgatccagcaatcccactgctggatatataccc<font color="green"><u>AAAAGAATTGGAGG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGCGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGATCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATAGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>CCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGAGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACTGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGTTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGGTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCGCCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAGCAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAGAATCTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATTGAAGG</u></font>cagtccttgaagagacatttgtatgcccatgtgc<br>acagcagcattattcacaacagccaaagcatagaagcaagccagtgtctgttcttggatgaatgagtaaacaaaatgtggcatagccatgcaatggagta<br>ttactcagccttaaaaaagaaggaaatcctggcggggcacggtggctcacgcctataatcctgacactttgggagaccgaggtgggtggatcatttgagg<br>tcaggagtttgagaccagcctggccaacatggtgaaaccccgcctctactaaaaatacaaaaattagctgggattggtggcgggtgcctataatcccagc<br>tactcgtgtggctgaggcgagagaatcgcttgaacccagaaggcagaggttg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	55	6382	326	NA	intron:NOD1:NM:006092:9/14	
0	chr2	103182803	103188850	2000131	0	-	AC007278; RIP_L1_chr2_102_01	ATTTGCGGCCGCTGTTAAGGGCATTACCAAGCAGAG	ACCTTGTATCCTGTGGCCTTGC	LINE	L1	L1HS	acatgttaagggcattaccaagcagagataatggtagaccaatattattcatgaacaaagatacatcaatcttcaacaaaaatattagcgataggatcca<br>ggaatatattaaaaactactacatgatgatcaagttgggtttatctcaggaatgaaagggtagttcaacattttaaaattaataaaaaagttaatttgtt<br>tactacattaacaaaataaaaaataaaaatgatttgattactgtattagattctgataaagcatttgatgtaatatacaatccattaatgtaaaaattct<br>taaattagaaatagaagagaacttactctgataacaggtgtctattaatccccctccacagttaacttaatgcttactggttaatt<font color="green"><u>AATGATGAATTTTC<br></u></font><font color="red">GGGGGAGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGTGACGCAGAAGACAGGTGATTTCTGCATTTCCATC<br>TGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGCATTGCCTC<br>ACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCG<br>CTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAG<br>CAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAA<br>CTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCT<br>GCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGG<br>GTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCAAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCCGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGACCAACGTTCAGA<br>TTCAGGAAATACAGAGAACTCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACT<br>TTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCCCTAAACATGGAAAGGAACAACCGGTACCA<br>GCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGA<br>TCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCAT<br>CAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAA<br>AAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCA<br>ATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACTCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAG<br>ACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTC<br>AGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAA<br>ATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAC<br>TCAGGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAAT<br>AAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAT<br>GCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAACAGAA<br>GGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGAT<br>CAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGAT<br>CCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACA<br>CTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAG<br>TCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGA<br>ATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGA<br>ACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGAT<br>GCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAA<br>GCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAAC<br>CCACAGCCAATATCATTCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACAT<br>AGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGAC<br>ATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAA<br>AATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGTGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGG<br>AATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCA<br>TGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGGCTTTCT<br>TCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCAT<br>CACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAG<br>CTCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCT<br>GGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAG<br>ACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCA<br>ACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGTGAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGG<br>AGAAAATTTTCGCATCCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAA<br>AAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAA<br>ATGCAGATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAA<br>TAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGGAATACCATT<br>TGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACA<br>ATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA<br>ATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTC<br>ACTCATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAG<br>CATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACAT<br>GTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAATTAAAAAAAAAA</font><font color="green"><u>AATGATGAATTTTC</u></font>cccctctctacatcttttcaacgttgtgttagagatgc<br>tagttagtacaataaagcaggaaaaaagaatacaaactaccaatattggaaagatacaaagttatgtttatttgaagatgatatgattgtacacatagaa<br>aatgttgatagatccacataaaacatactacatttaataagtgaatttagcaaggccacaggatacaaggttaatttgaaatttaattgtaactgcatat<br>accagcaacaaataattgaaaaataaaatcaaaatgcagtaatttaaaagcacatagcatagcctaaaaatattaaaatgctgagtgataaagttagtga<br>aagatgtacacaaaatctacattaaagaatataagacattaattacta	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr5	79074714	79080761	2000132	0	-	AC008496; RIP_L1_chr5_079_01	ATTTGCGGCCGCAATAAAACCAGTATGGTCCTGGGG	TTAAAATGCCCCCATGCCG	LINE	L1	L1HS	gtcaggagcaggctgatggaggaggctacgcatcctgattctaaagatcatatcaaatacaaactagcaaatagaaaaaaaaagtcaggaagcggcaacc<br>taatctaccaggaattctaaattataaagctacaataataaaaccagtatggtcctggggcataaatagatggatcaatagacagattataaaggtcagg<br>aatagacccaaacatatagtctcttgagtgtataataatggaagtatttcagatcagaagggaaaatgatgggttttcctgatgggacagctagatagcc<br>atactaaaaaaaaaaaaaaagtaggatttcctacttcacacaatctactgagataaattccagatgataaaatacctagtttt<font color="green"><u>TAAAAATGAAATTACTG<br></u></font><font color="red">GGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGG<br>TTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGAGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGC<br>GCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACC<br>GGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGAT<br>CAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCTCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGC<br>CCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAG<br>TGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCC<br>CTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTG<br>TCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAG<br>ATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACAAAGCT<br>GGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGA<br>AAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTA<br>CGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGT<br>TTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGA<br>TGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTCAGATTCAGGAAATA<br>CAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAG<br>CCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGGAGAGAGTGGGGGCCAAT<br>ATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAG<br>CAAATGCTGAGAGATTTTGTCATCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAA<br>ATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACA<br>CATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGATCCATCAGTGTGCTGT<br>ATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGG<br>TTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGA<br>GGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACA<br>TTAATAATGGAAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGAATACCCAGGAATTGAACTCAGCTCTGCACC<br>AAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACAT<br>AGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAG<br>AATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCT<br>TTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAG<br>AAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATA<br>ACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTG<br>ATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAAT<br>ACAAACTACCATCAGAGAATCCTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTGGACACATACACTCTCCCAAGA<br>CTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAG<br>ATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAA<br>CTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCA<br>AAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGT<br>TCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAA<br>AATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAAT<br>ATCATACTGAATGGGCAAAAACTGCAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAG<br>TTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTA<br>TCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCA<br>TTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTGAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAATTAAAAAAAAAAATAAAAATAAA</font><font color="green"><u>TAAAAATGAAATTACTG</u></font>tattggctactacaaaaaaacatgagtgaataaac<br>atacacacacacacacacacacacacagaaagagagaggggggcaggcggcatgggggcattttaaaatatgctacccaagttaaaagctattttcaaaa<br>gagattgataaatccaactcaattattataaaaaatatgcacggtaaaaaatttttaaagatttgaaacttatctcttaataggaaagctaacttcctta<br>aaaaaacagagcttctacaaatcaaaaagaaaaaataccacaatccaagagaaaaaaaattgctaggaaatgatcagtttatagaaaaagaagtactgta<br>gtggctctgaaccatatgaaaagatgttcaacctaataaaagaaatgc	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:CMYA5:NM:153610:9/13	
0	chr15	71021854	71027508	2000133	0	+	AC009269;79799; RIP_L1_chr15_068_01;AC203602	ATTTGCGGCCGCCCACCCAAAAGACACCGTACTTG;NA	CGCAGTATGCAGTTTTTCAGCC;NA	LINE	L1	L1HS	gaaagcagtttggagatttctcaaagaactgaaaatagaactaccattcaacccagcaatcccattactgggtatatactcaaaggaaaataaatcattc<br>cacccaaaagacaccgtacttgtatgttcactgcagcactattcacaatagcaaaaacatggaagcaacttaggtcccatcaagagtggactggaaaaag<br>aaaatgtggtacatatataccatggaatactacttagccataaaaaaagaatgaaaccatgtctttgctgcagcttggatgcaatcagaggccactatcc<br>cacgcaaattaatgcagaaacagaaaaccaaatcccacatgttcctgcttaccagtgggaactaaacactgagtacacatggacat<font color="green"><u>AAAGATGGGAACAA<br></u></font><font color="red">CCCTTCCGCCGCCTGTGAAGGGACCCACCGAGCTCCCAGGGCCTTTCTGCTGCTTCCTCTACCCCTGTATTTTGCTCGGCTCTGTAACTTGACTCAGCTT<br>CAGAGAGTGGTTAAAAATTCTCAACAAGAAAAAGCTGTGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCG<br>ACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTC<br>CTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAG<br>ACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAA<br>AAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTC<br>ACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAA<br>ACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGA<br>AAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGA<br>AATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTG<br>ATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCA<br>ACGTTCAGATTCAGGAAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAA<br>GGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCC<br>AGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATACAGCCAAACTAAGCTTCATAAGTGAAGGAGAAA<br>TAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAA<br>CCGGTACCAGCCACTGCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATA<br>ATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTC<br>AAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGG<br>AAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTA<br>AAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAA<br>GAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGA<br>ATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACC<br>TATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCA<br>AACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAA<br>GGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATA<br>GCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAG<br>CTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTT<br>TGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATC<br>ACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCG<br>ACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAAC<br>CAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAA<br>AAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATAT<br>CCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCAT<br>CCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGAT<br>GCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCT<br>ATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCT<br>ATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTT<br>GCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCA<br>ATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAA<br>ATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAG<br>AACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAA<br>TGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGC<br>TGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAAC<br>AGAACAGAGCCCTCAGAAATAATGCCGCGTATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATA<br>AATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTT<br>AAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAA<br>GCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTA<br>CAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAA<br>CCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCC<br>ATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGAT<br>GCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGA<br>AATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCA<br>CTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAG<br>CCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCG<br>CATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGG<br>GAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAA<br>TGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATGGGAACAA</u></font>aagacactagagggcagacagagggatgggg<br>ggaagggctgaaaaactgcatactgcgtactatgctcaatacctgggtgacaagatcaatcataccacaaacctcggcaacacacaatacacccaagtaa<br>caaacatgcatatgtacccctgaatctaaaagttgaattttttaatgcagattcataaacaaacaccattctaaatctaaatccatctctaaaagtgttg<br>tctaggaatatatctgagaagctaacattcctaaaccccttaaatataggaaactattttaaggagtctgaagaattgatgtttattctctcaattaaaa<br>aaaatatcaccactaaccaaactgggattatactaatagtcctccagcttgcttc	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr8	135082930	135089015	2000134	0	-	L1HS166;AC021017;238091; RIP_L1_chr8_135_01;AC193119	ATTTGCGGCCGCCCAAGGTGCTAGAATTACAGACGTG;NA	CGACTTCCACAGAGAAAACGGAG;NA	LINE	L1	L1HS	agtcaggagcaacaacagagctacactccctaaaactacagatttgtcattgttgtatacgtaatataaattattttatttttgagacaaggtcttgctc<br>tgtggcccaagctggagttcagtggcacaatcacagctcactgcagccttgatctcccaggcttaagtgatcctcccacctcagcctcttgagtaggtgg<br>gactacaggtacacatcaacatatccagctaagtttttaattttttatttagttgtagagatagggtcttgctattttctccaagctgctctcaaactcc<br>tggcctcaagtgatccttccacctcaacctcccaaggtgctagaattacagacgtgcccagcccataatataaattgtgtgttt<font color="green"><u>AAAATGTTGAAGAATG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACCATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACAGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAAGTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGCATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCACATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACTTGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGCTGATTAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGTTGAAGAA<br>TG</u></font>taaaaaatgagaaccatgagaaaggaataagatactaccaatagcatttcaggcatgttttaaaagaacacatagaacctctagaaaagaaaatgtga<br>tcactgaaattcaaaagtatttgagacaatgtaaaggacagtaaataagacagcttgaggaatcggtgcaaggatttgacaggaagacattgccaagagt<br>tcagaagagagagaagagatgtaaagtaggaagaagtagaagaaaagaagggtagaatggaaaagtttagcctaatttgtttcagaaaaaatggggtact<br>agaggtgatagggggaaatatttttcaaaaggaattcatgataaaattcagaaatcatcagacttaggtagccagcttgatggaaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6204;NA	102;NA	NA;NA	intergenic;intergenic	
0	chr3	98775501	98775502	2000135	0	-	L1HS373;AC022838; RIP_L1_chr3_100_01	ATTTGCGGCCGCTGCAACGGCTAAATACCATGTG	TCAGTGGCAAAACACGAAAGG	LINE	L1	L1HS	attattaatcaggccatctgaacattctagtaatcacctggaaacaacctaaaatcatttctaactataggttaatgtggatttgggacaaaaatttttc<br>ccttaaaacatctctaagattagtgtattccagttctataatgtgaatattggctggcacattgctgacagttagaaagaatgcaacggctaaataccat<br>gtgcaatttctcaaatcacaaatttgaaggatggtttgcgtcatgtcccaacaggacatttttgggaaaataaagtgttgtttcttcataactattgcag<br>ctaataaaattctaagccagctagataattttctttcattggttaaatgcattgtcactaggtattttgtcggaaaatcttgtt<font color="green"><u>AAGAAGAAGGGCTGGG<br></u></font><font color="red">GGAGCCAAGATGGCCAAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGT<br>TCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCG<br>CAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCG<br>GCTTAAGAAACGGTGCACCACGAGACTATATCCCACACCTGGCTCGGAGGTTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATC<br>AAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAATCTCGAACTGGGTGGAGCC<br>CACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAATCTCTGCAGACTTAAGT<br>GTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCC<br>TGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGT<br>CTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGA<br>TGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTG<br>GATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAA<br>AACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTAC<br>GTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTT<br>TAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGAT<br>GTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATAC<br>AGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGC<br>CAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATA<br>TTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGC<br>AAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAA<br>TCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACAC<br>ATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTA<br>TTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGT<br>TGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAG<br>GAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACAT<br>TAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCA<br>AGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATA<br>GTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGA<br>ATTTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTT<br>TGAAACCAACGAGAACAAAGACACCACATACCAGAAGCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGA<br>AAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAGAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAA<br>CTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGA<br>TAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATA<br>CAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGAC<br>TAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGA<br>TGGATTCACAGTCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTAT<br>CTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAAAACATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAATAATAAAGTATGATACTCTTTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGAAGGGCTGGG</u></font>aaaatgcgtgcgctaggagca<br>tgtgtgggggtgtggtacagagaactctctttccaccagctcatacagttctaaagcacatattttcttattaaactcagatgttatttttctaatttgc<br>ctctggatttttaatgacatttactccaaacgcaacatttaatagctctgtgaaaataataacaaaattgaacagaagggaagtgtttagtacgaaaaag<br>ttggatttaaattcattttcccagttctcttcttccctttcccctttcgtgttttgccactgacaataattccagtgtcaacaatgagaaccttagggat<br>aagtcaaaatataaatgatctacatttatttggttaactgctggaggaaagacaacatcccgt	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6294	215	NA	intergenic	
0	chr7	62609196	62615238	2000136	0	-	AC069285; RIP_L1_chr7_062_01	ATTTGCGGCCGCGTGAACATTATACCGCTGATTGCC	AGTTCGCTTGAGCAGCAGTTTC	LINE	L1	L1HS	gtctttaatcactcagcttaataagaaagttgaaaataaataatttacattgtcctactatttacattttactaactccatatgtgtagaggtgtaaggg<br>atttttaaaagagcaacaaggttgagacttgtaaacctgaatttagatagaagatgaatcttcaaaagtattgataactttggaaaataatttttaagaa<br>aggcatgacagccagtgattatctagtttcacaatttgttgtcagagtttgtgaaggctttactataaaaactataggatgaacaaggaatccttgatgc<br>tgagattttgtcttttgtcttaataggtgaacattataccgctgattgccaaagcagacacaatttctaaaaatgatttacagactttt<font color="green"><u>AAGAGTAAGAT<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACAGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAACTCAAGGAGGCCTGCCTGCCTCTCTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGAACCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAACCTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAATGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>GGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAC<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGTCTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAACGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTGGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTGCAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAACAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACATGATTG<br>TATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCCTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACTGCTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATCTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATGCTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACGTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACCACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACCAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAACGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAACATTAAAAAAAAAA</font><font color="green"><u>AAGAGTAAGAT</u></font>aatgagtgaattgattagcagtggcctccagatatatcagctccca<br>gcagatgaagaaactgctgctcaagcgaactcctcaattaatgtaagtttcagtaacaatatctgacaaagaggctataaatgagtttttatccagaatc<br>cagtgtgaaaattttttaatttttttattttgaaaaacttcttttgagaattgattctttgtaaacagatttatttagatttaattcatacaccgtgttc<br>ctcaaggatattggcttataattttcttcttggaagtatattttctttcttggatatcagggggatgcttgcctcatagaatgactctgaaggtgttacc<br>tcctttttctattttttcaaagaatttgaggatgttttatatt	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr7	110347053	110353102	2000137	0	-	AC073326; RIP_L1_chr7_109_01	ATTTGCGGCCGCAAATGGTGCTGGGGTAACTGGC	CAAGAAGTGTCCATGTCTTTTGCC	LINE	L1	L1HS	ttcacagaatcagaaaaatctattttaaaattcgtatggaaacagaaaaagagcccgaatagccaaaacaatcccaagctgtaagaacaaagtcagacgc<br>atcacattacctgacttcaaactagtaatgtaagtccacagtaaccaaaagagcatggtactagtacaaaaacagacatgtagaccaatggaacagaata<br>gagaacccagaaatcaaactgtatacctacagccatctgatctttgacaaacccaacaaaaataagcaatggggaaaggactccctattaaataaatggt<br>gctggggtaactggctagacatatgcaaaagaaagaaactgaacccttacctttcaccatatacaaaatcaactcaagatggatt<font color="green"><u>AAAAATTTAAGTGTA<br></u></font><font color="red">GGTTATCTACAAGAGTCATACGAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGTGACGCAGAAGACGGGTGATTTCTGCATTTC<br>CATCTGAGGTACCGGGTTCATCTCACCAGGGAGTGCCAGACAGTGTGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGTGAGGCATT<br>GCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTCCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATA<br>TTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAG<br>CACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCGTTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGC<br>TCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAA<br>CCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCA<br>AGTGGGTCCCTGACCCCTGACCCCCAAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCT<br>GCAGCTGAGGGTCCTGTCTCTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTTCATCACCATCATCAAAGACCAAAAGT<br>AGATAAAACCACAAAGATGGGGAAAAAACGGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCA<br>GCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAAATACTCTGAGCTACGGGAGGACATTCAAACCA<br>AAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGGATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAAC<br>CAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATG<br>AAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTG<br>GTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGT<br>TCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAA<br>AAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAA<br>GAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAA<br>ATACTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGG<br>TACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGA<br>CAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGA<br>CCCATCAGTGTGTTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAA<br>CAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGG<br>GATCAATTCAACAAGAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGA<br>CTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTG<br>AACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAAAATATACATTTTTTTCAGCACCACACCACACCTATT<br>CCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACT<br>AGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCA<br>GAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCAC<br>TAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAG<br>CAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAA<br>AGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCA<br>CCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCCAGAAGAAATGGATACATTCCTCGACAC<br>ATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAA<br>AAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAG<br>AGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTT<br>GATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCT<br>GGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAG<br>AAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGA<br>CAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTC<br>AACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAAGAAGTCAAATTGTCCCTGTTTGCAG<br>ACAACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGT<br>ACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATAC<br>CTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACA<br>TTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGAC<br>TTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGA<br>GGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAA<br>CAGAGCCCTCAGAAATAATGACGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATG<br>GTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAAC<br>GTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAA<br>TGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAC<br>ATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCC<br>ATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCA<br>GAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGG<br>AGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATA<br>CCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACTCGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATACGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAA</font><font color="green"><u>AAAAATTTAAGTGTA</u></font>acacctcaaactgtaaaaatcctagaagaaagcca<br>aggaaacatcattctgggtatcaaccttgggaaagaatttatgaccaagtcctcaaaaaaattacagcaaaaacaaaaattgacgagtgggacctaatta<br>aactaaggagcatctgcacagcaaaagaaactatcaatagagtaagcaggcaacctacagaataagagaaaatattcacaacctatgcacctgacaaaga<br>tctaatattcagaatctataaggaacttaaggaaatcaacaagcaaaaacaaccccattaaaaagtgggcaaaagacatggacacttcttgaaagaagac<br>atacaagtagccaacaagcatgaaaaaatgctcagcatcaccagtcatca	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:IMMP2L:NM:032549:5/6	
0	chr1	247850476	247856508	2000138	0	+	AC091612;237935; RIP_L1_chr1_244_01;AC229898	ATTTGCGGCCGCTTACCAGAAGGTGGGAAGGGAG;NA	TTACACAGTGCAACACATCCGTTC;NA	LINE	L1	L1HS	tggcagtttatctatttctttatatgtactaatatttgcagatctgataatattaatattttaccagaaggtgggaagggaggagaggtgaagagaagtt<br>gcttactgggtacaaaaatacagttagatagaatatattctactgtttgtagcacagtatggtgactgtagttagcaaaaattaattgtatatttcaaaa<br>tagctagaagtgaagatttaaatgtttccaacaagggaaatgatcaatctttgaggtgatggatattctaattaccctgatttgataatcacacattgta<br>tgcatgtatcacagtgccaatatgaaccctataaatatgtacagttacagttatactttgataaagatactgcaaaagtt<font color="green"><u>AAAAAATGAAAAGAAAGATC<br></u></font><font color="red">GAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACTGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGGTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTGCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAGTCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACTCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGTTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGAAAAGAAAGATC</u></font>atattaaaacaatgaggaaaaatcttgatgatattcatttataaaga<br>acggatgtgttgcactgtgtaatagtgttaaaatacagtttaaatgtgcagttataaaaatgttgttactagtgagggaaaaaataaaatgaaataaaac<br>aaaaacttaagcttggaaatagactctagcatacataatgttttggtatttaataatttttgcatttaaaatcagtaaagaagtaaattatctagaaaga<br>aattgtggagtaattaattagtcctttgggacacaataactcagctcaaaaccacattctctaaaccaaaattaattacaaaacaaatatgatttcaaat<br>agtaaaataaataaaactacagaagctatcaga	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr1	174559265	174565516	2000139	0	-	AL021069; RIP_L1_chr1_171_01	ATTTGCGGCCGCAAGATGCCCACTTTCACCACCG	CTGAATCTGCACATTGCTTTGGAC	LINE	L1	L1HS	tgcccactttcaccaccgttattcaacatagtcctggaaatcctagctaaaggaatcagataagataaagaaataaaggtcatccaaactgaaatggaag<br>aagtcaaattatccttctttgcagatgatataatcttatatttagaaaaacctaaagacttaatcaagaaattattagaactgagaagtaaattacataa<br>aattacaggatataaaatcaatatatgaaaatcaatagcatttaaatatgccaacaatgaacaatctgaaaaagaaatttaaaatttaagaatccaattt<br>gcaacagctacaaataaattatctaggaataacttaaccaaagaagtgaaagatctgtacaataagaactacaaaacactgatg<font color="green"><u>AAAGAAACTGAAGAGG<br></u></font><font color="red">AGGGAGGAACCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCCACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCAAGGCTTGCTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCAGCCCCCAGCAGGGGCACACTGACACCTCACATCGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTCAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGACAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACATCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACAGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCATTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCCAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTCAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAAGAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGATAAC<br>TGGCTAGCCATATGTAGAAAGATGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATGAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATAGCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAATAAATAAAAAAAAAAAGAAAAAAAAACAATACAGCATCTAAAACAAAGGAGGTATTAAAAAATAACTTTACAGT<br>CTCATATTCATTTATTTAACCAAAAGTTGTTAGAGCATTAACTTTGTGTATTAGTCCATTTTAAATTGCTGTAAAGGAACACCTGAGACATGGTAATTTA<br>TAAATAAAAGAAGTTTATTTGGCTCACAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAACTGAAGAGG</u></font>tcacaaaaaatggaaagatattccatgttcat<br>ggattagaagaatcaatattgttaaaatgtccaaagcaatgtgcagattcagtgtaatccgaatcaaagtatcaatctcattcttcacagaaatataaat<br>aaataatcgtaaattttgatggaacccatgaaagacctggaatagcctaagccatcctaaacaaaaagaacaaaactggagaactcacattacctgactt<br>caaattatactacagagctactgcaaccaaaacagcacgggactggcataaaaagaaacacatagaccaatggaacagaataaagaatccagaagtaaat<br>ccatacatctacattgaactcatttttgacaacatgccaagaacatacattg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:RABGAP1L:NM:014857:13/21	
0	chrX	82314595	82320644	2000140	0	-	AL022308; RIP_L1_chrX_082_01	ATTTGCGGCCGCTGGGACTTACATCAGCAGCTTCC	ACAGGTGTGTTAGCCAGGGTTGTC	LINE	L1	L1HS	tctgatcatcccaacaatggttaatattacaagtcaacttgactggcttgaggatgcccagatggctggtgaagcactgttcctgggtgtgtctgtgagg<br>gtgttgccagaggagattgacatttgagtcagtggactggaggatcaagattcaacccagtgtgggtggacaccattcaatcggctgccagaatggcaag<br>aacaaagcaggtggaagaaggcatgataattttgcttgctgagtcttgtggctttctctctctcttcccatgctggatacttgattcctctcctcctgcc<br>cttggacatcagactccaggttcttaggcctttggactttgggacttacatcagcagcttcccagggggtcttgggccttcagctt<font color="green"><u>AAGAGTGAGGGCTG<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCAGGTCACTCCCACCCGAATATTGCACTTTTC<br>AGACTGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGTCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACACCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTCTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGACAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAATGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCACAAATCAACAGAATATACATTCTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAACAAATATAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTGCATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGAAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGAAAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTTGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAAGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGTTGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAATGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATTCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATTGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCTCTCT<br>GAAATAATGCCACATATCTACAACTATCCGATCTTTGACAAACCTGAGAAAAACAAGCAACGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACAATTATACAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTTCACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACTCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATGTTCTCACTCAT<br>AGGTGGGGAATGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACGTTAGTGGGTACAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTGAGGGCTG</u></font>cactgtcagcttgctgattttgaggcttttggactt<br>agaccgattccatgctactggcttttttctttccccagcaggcagacagcctattgtgagatttccccttgtaatcgtgtgagccaattctccctaatta<br>actcccttttatatatacctatatcctactggttttgtccttctggacaaccctggctaacacacctgtgagacccaattagggtatctgatccccagga<br>ctgtaagaaaataaatgtgtgttgttttaagccattaagtttgtggtaatttgttacaacatcagtagaaatctaatacacatagaaacaaaatgtccat<br>ttccaaatattgattttcacattttagtaatgtctatgcacatgaaccaa	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chrX	141565634	141571716	2000141	0	+	AL031586; RIP_L1_chrX_141_01	ATTTGCGGCCGCTCCTCGTCACTCAAAGTGTGGTC	AAAGACAACTGGCAGGACAGGTAG	LINE	L1	L1HS	aaggcaagccagttttagaattttactgaatgtagcagaaaaccccggcaataataatctttgattaaattatcctcatgctcccctactttgggaacct<br>cttttcatgatactgatactgtgattacaaacacacgtacacacatgcataaatgtggtgagtcctaatccagggaagaatgatatgctttcctaaactc<br>tagcattaagagaaaattgggatggattgtgagagtagcagaagagatgacagaacttgaaattatatatgaatggccttgagtagtaaataaaaatgat<br>acacagagccaaggtattttagatcctcgtcactcaaagtgtggtctctgtaccagcagcaccagcatcatctgggagcttgtt<font color="green"><u>AGAAATACAGCATGTC<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACC<br>AGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGGCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACTGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTGGCACAGCAGGCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAACTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCCGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAAGAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGAACAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAAAAAGAAATGGGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGA<br>TGCGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATA<br>CAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAG<br>CCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAAT<br>ATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAG<br>CAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAA<br>ATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACA<br>CATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAATGTGCTGT<br>ATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGG<br>TTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGA<br>GGAGCTAACTATCCAAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACA<br>TTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACC<br>AAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAACCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAACTGACCACAT<br>AGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAG<br>AATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCT<br>TTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAG<br>AAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATA<br>ACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTG<br>ATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAGATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGACAT<br>ACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGA<br>CTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAG<br>ATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAA<br>CTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCA<br>AAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGT<br>TCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAA<br>AATTCAACAACCCTTCATGCTAAAAACTCTCAAGAAATTAGGTATTGATGGGACGTATTTCAAAATAAAAAGAGCTATCTATGACAAACCCACAGCCAAT<br>ATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAG<br>TTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTA<br>TCTAGAAAACCCCATCTTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCA<br>TTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATGCAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATAGAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AACGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCCAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCGTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGAAGAGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACCTGCACAATGTGCACATGTACCCTAAAACTTA<br>GAGTATAATAAAAAAAATAAATAAATAAAAATAAAATAAAATAAAATAAACTGTCCTAATGCCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATACAGCATGTC</u></font>a<br>gtccccatctcagacttactgactcagaatctgcatttttatcaagaacacaaggttattcatacgacacttaagtttgagaaatacttatccagagcat<br>tttgggtatgggatttacctgctttttttcttactgtcatagtcatagcaagtataaacaaaccaagtataagtcaattcaagttgccctacctgtcctg<br>ccagttgtctttactgaatggagagaattttgcactgagggctgacaggactcattacattgtttgtctctgggagctggctgagcttgcaagcgtttgt<br>ggcagattgccatttgaattgtttttcctgtctctttctgttaccaaaaagtataatattgcacaggggggaaaatgtagagg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr6	2418015	2424041	2000142	0	-	AL031768; RIP_L1_chr6_002_01	ATTTGCGGCCGCCCCAAAGTGATTACAGGTGTGATCC	AACACAGAAACCCAGTAAAGTGGC	LINE	L1	L1HS	agtggtaaattttgttatgtctattttaccacaatttaaaataagtaaataaaaatcatttacagataaaaggtacattcaaaatataaaatacatcaat<br>gaattttaaagtaacagagtaccaaaagtttttttatattgtttcagaatctatgttgcaattaacttttaaaaattatcatttatttaaatttatgaag<br>actcaaagaatatttataattatccaaaagactatttaaatacttctccttttgcaactacatatttatgtgaagccagattttccttatacgtttcaac<br>caaaacaacattttgcaacagactgaatgcaaagcgtgaatgaaaatccaacttcttctattatgccagacatgacagaggtttgttt<font color="green"><u>AAAAAAAAAAAA<br></u></font><font color="red">TTGTGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTG<br>AGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCA<br>CCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGC<br>TTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGC<br>AGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGTGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAAC<br>TGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTG<br>CAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGG<br>TCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCAAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAAAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGTTCTGAAATTGGGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACTGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAAATGGATTAAAGATTTAAACGTCAGA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACCACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCATATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAA</font><font color="green"><u>AAAAAAAAAAAA</u></font>gtaaaacgatgccactttactgggtttctgtgttgaaaatacagcaatttttcataaaaac<br>atcatttatgtcaacatgtaataggcttatgtttatgtgaattaatgaaagatgtttgcatatgaattaaatattttaaatctgcccagtttgggtttct<br>aatatggtaattgtctataggtacgctccacataatgataaactatttggggtccttgataattttttaaagtgacaaggggcactgagccccaaaactg<br>tgagaactgctgcattcagatggctgtattacagggcatagagcatttaatctcctcctctggctcctctgcccctggaagatggcagttttaatagaga<br>gaatgtagacagtcccattctgggggc	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr20	7096794	7102846	2000143	0	-	237986;L1HS104;AL096799; RIP_L1_chr20_007_01;AC216061	ATTTGCGGCCGCAGCCACCATGTTCTTTGTGGG;NA	TGCTACAGAGGAGTCCATTTGACTG;NA	LINE	L1	L1HS	tagaccaatgggaatccttcttgccaagccaccatgttctttgtgggaaacaaacatggcttatatttagaaggagaagaggaaggacattcatgacgac<br>acctcacctgatctgagcctcagcctgtgtcagcttggaaatttatgatgattatttcttcctatgggtaaaattaattgatggtgctcatacacaaaga<br>tagtttataagaagtacatcctaaaaccttctgttgttaaatgcaagtacaattttaaaaaaagcaaggatatttcagtattactgttagaaactttctc<br>atggtttctacgctatggagatgtggttttgtttgaactgtgaatgatattacatttttaatattatactagagaattttattcattt<font color="green"><u>AAAAATTTTGTC<br></u></font><font color="red">GAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACTTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAG<br>AAGGAAAACTAACAACCAGAAAGGACATCCACACCAAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAA<br>AAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAG<br>AATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTG<br>AAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGA<br>ATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAA<br>AAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGGCCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGA<br>ATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAAC<br>GCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAG<br>AAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACA<br>TTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTACAGACAGGCAAATGCT<br>GAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCC<br>AAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAA<br>TATTAACTTTAAATGTAAATGGACTAAATTCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGA<br>AACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATC<br>CTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAA<br>CTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAAT<br>GGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAACAGAC<br>CTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAA<br>GTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCAC<br>TCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACC<br>AACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGG<br>AAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAAT<br>CAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCTAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCG<br>CTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTA<br>CCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCA<br>GGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTC<br>ACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTT<br>ATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCT<br>CAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATA<br>CGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACGTGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAAC<br>AACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACT<br>GAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCC<br>AGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAA<br>ACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATA<br>CAACAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGAT<br>GTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAA<br>TCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAAC<br>TACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAA<br>CTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCAC<br>ATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTGAATAAATGGTGCTGGGAAAACTGGCTAGCCAT<br>ATGTAGAAAGCTGAAACTCGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACC<br>CTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACA<br>AATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTA<br>CTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATG<br>AACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTA<br>TGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTGTACACTG<br>TTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTA<br>CTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACC<br>AACCCAACTGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTT<br>TGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGA<br>ACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAA<br>TGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAGCCTGCACAATGTGCACATGTACCCTAAAACTTAGAGT<br>ATAATAAAAAAAAAAAAAAAAAAAAGACTCTAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTGTC</u></font>atgttctactaagttttcacaatcaatcttctcta<br>aactatgtgagctgctggtcttattgaaagtttaaccaggtttgcaacggcctcatctattcctcagcctgctgtgtgaccttggatcttaccattggtt<br>ctctgcttattggcacttccatataagacagggcagaagacacaaaaaagcatggaacccctgtcagtcaaatggactcctctgtagcagttccagagca<br>aaaaaaatgggatgaaaagttgaaacatttgactttcaagaggtttgggcataatatggaaattccatccacaactcctctatttaccattcttggttat<br>aaactaaatttcgtctttttctgagatttaagattccttgtctatgcttggtg	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	59;NA	6196;NA	131;NA	NA;NA	intergenic;intergenic	
0	chr22	29058955	29065311	2000144	0	+	L1HS86;AL121825; RIP_L1_chr22_027_01	ATTTGCGGCCGCGCAACTGTGCAGTATCAGGAAATG	GACAGAGGAAACTGCTGACTCCAC	LINE	L1	L1HS	agtacacacaatataaatgctagtctagctataataatctcaaacacctatacttacagaaggaagagtgcttccacacaaatactctataatttatatg<br>gttcttccaaataagcctaatgaaaattttatttttcataaaatatatttggaatttgtggccaatttcttgaacaattattattaaatggttttcataa<br>atctttgtgaatattaggaagcaatggattcaacaaaagcattatgtgacagtggagcaatattcaaaactcctgttgctacacaagccaaaaatgacag<br>ggatccaagacaactcaaaacaaaaatattacacacagaacagaagcaactgtgcagtatcaggaaatgcaatacactttttctagtgat<font color="green"><u>AAGAAACTTC<br></u></font><font color="red">CACCGGGCGCGGTGGCTCACACCTGTAATCCCAGTACTTTGGGAGGCTGAGGCAGGCTGATCTCGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG<br>TGAAACCCCGTCTGTACTAAAAATACAATAAATTAGCCAGGCGTGGTGGCGAACGCCTGTAGTCCCAGCTACTCGGAAGGCTGAGATAGGAGAATGGCGT<br>GAACCCAGGAGGCAGAGATTGCAGTGAGCCGAGATAGTGCCGCTGCACTCCAGCCTGGGAGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAGAA<br>AGAAAGAAAGAAAAAGAGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACACAGAAGACGGGTGATTTCT<br>GCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCG<br>AGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCAC<br>CCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGA<br>TTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCCAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCC<br>GGGAAGCTCCAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACA<br>GCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGC<br>CTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAA<br>CAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGAC<br>CAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTC<br>CTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATT<br>CAAACCAAAGGCAAAGAAATTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGC<br>TGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAA<br>TGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGT<br>CTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGG<br>CCAACGTTCAGATTCAGGAAGTACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAAT<br>GAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAA<br>GCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAG<br>AAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAA<br>CAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATC<br>ACAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGA<br>GTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAA<br>TGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAGCAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATG<br>GTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTAC<br>AAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCA<br>GGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAAAATATACATTTTTTTCAGCACCACACCAC<br>ACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAA<br>TCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAAT<br>GAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTT<br>ATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAA<br>AAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTT<br>TTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGAT<br>ATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCC<br>TCAACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACC<br>AACCAAAAAGAGTCCAGGACCAGATGGATTCACTGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATA<br>GAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAA<br>TATCCTTGATGAACATTGACGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTT<br>CATCCCTGGGATGCAAGGCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATA<br>GATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTA<br>TCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTATCTCACCACT<br>CCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTG<br>TTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAA<br>TCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAAT<br>AAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGG<br>AAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTAC<br>CAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAA<br>AGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGG<br>AACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTA<br>ATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGA<br>TTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCA<br>AAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAAC<br>CTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAA<br>CAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTG<br>GCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAG<br>GATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACT<br>AGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTAGGAGGAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGAAAGAAA</font><font color="green"><u>AAGAAACTTC</u></font>acatggggccacatgtctaataaaggtgactga<br>atcccaaaattatattggtaacatggaaattcctgataggggaagaatattcccagaagtgtgaccagttagggccaaaataaaaggtacaatttaccca<br>attattatacctaagtacccggccttattaaatatatgttcctcaatatcaaattgtactaaaaatcaggaaactaagctcctagtagagaactggtcaa<br>agggaagatctttgtggagtcagcagtttcctctgtcctacaatttggcaaaataatctcataagcacaagaaggttaatatgcttgcattaaaaatgtt<br>aagttacttataatccaatttaaatgtaagttcaaataccttaacatgttcacatta	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6154	410	NA	intron:TTC28:NM:001145418:1/23	
0	chrX	95308980	95319591	2000145	0	-	AL137845; RIP_L1_chrX_095_01	ATTTGCGGCCGCTCACTGTAATGCAAGCGTGGTTC	TGCCAAGAGATAGGGGTCTAGTTTC	LINE	L1	L1HS	caaactatttcaaaaaatacagggggaaggaataatttcaaactcattctacaaggccaatattaccctgataccaaaaacacagaaagacacataagaa<br>aaagaaaaaggccaataattctgatgaatattgaggcaaatatcttcaaccaaatactaacaaaccaaattcaacaatacattagaaaggtcattcatta<br>tgaacaagtgagatttatcactgtaatgcaagcgtggttcaaaatactcatatcaatcaatgtggtgtatcatatcaattgaatgaagaataaaaaacgt<br>gattattttaattgatgctggaaatcatttaataaaattcttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaa<font color="green"><u>AAGAGACAAAG<br></u></font><font color="red">GAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAAAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCA<br>AGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACAATAATAATGGGAAACTTTAACACCCCACTGTCAACATTAGACAGACCAATGAGACAGAAA<br>GTTAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAATAGAATATACATTTT<br>TTTCAGCACCACACCACACCTATTCCAAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGACCACAAATTATAACAAACTGTCT<br>CTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGACTCACTAAAAACCGCTAAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTG<br>GGTACATAAGGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACACATTCAAAGCAGTG<br>TGTAGAGGGAAATTTATAGCACTAAATGACCACAACAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAG<br>AGCAAACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGGGAGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCC<br>AGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTG<br>TGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGA<br>CGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCT<br>CGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCAT<br>TGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCT<br>CTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCA<br>CGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGC<br>ACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGA<br>AAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAG<br>AGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGAC<br>GATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAA<br>TACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAA<br>GAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAA<br>TATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTAT<br>CCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGA<br>CACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGAC<br>TAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATA<br>TCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAAAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAG<br>CTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCA<br>TCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAAT<br>TAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAA<br>ATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAACAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGA<br>TCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACC<br>CAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGAGAGACTTTAACACCCCACTGTCAACATTAGACAGA<br>TCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAA<br>CAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAAT<br>TATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTG<br>CTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGG<br>ACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGACCACAACAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAA<br>AGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACC<br>CTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATC<br>AAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAA<br>ACTAGAAAATCTAGAAGAAATGGGTACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGTCCAATAACAGGC<br>TCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGG<br>TACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAG<br>AGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATC<br>AAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAG<br>CCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTAT<br>TGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACT<br>GGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTC<br>AATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGAT<br>AAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGT<br>GAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGC<br>TCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAAT<br>TTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGC<br>ATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGT<br>ACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAA<br>AAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCT<br>TATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAG<br>GCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGC<br>AAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAAT<br>GAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCA<br>AAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCAT<br>TAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAG<br>TCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCT<br>ATAAAGACACATGCACACGTATGCTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAA<br>AATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTC<br>AGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCA<br>CACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCA<br>TGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAATAAAGAA<br>AAAAAAAAAAAAAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACAAAAAAACCCTTCAAAAAATTAATGAATCCAGGAGCTGGTTTTTT<br>GAAAGGATCAACAAAATTGATAGACCACTAGTAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGATGCAATAAAAAATGATAAAGGGGATATCA<br>CCACCGATTCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCAA<br>CACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGCTTACCAACC<br>AAAAAGAGTCCAGGACCAGATGGATTCACAGCAGAATTCTACCAGAGGTACAAGGAGAAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAA<br>AAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATCGTGATACCAAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATC<br>CTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATC<br>CTTGGGATGCAAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAACCAAAGACAAAAAACCACATGATTATCTCAATAGAT<br>GCAGAAAAGGCCTTTGACAAAATTCAACAACCCTTCATGCTGAAAACTCTCAATAAATTAGGTATTGATGGGCTGTATCTCAAAATAATAAGAGCTATCT<br>ATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCT<br>ATTCAACATAGTCTTGGAAGTTCTGCCCAGGGCAATTAGGCAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGTA<br>GACGACATGATTGTATATCTAGAAAACCCCATTGTCTCAGCACAAAATCTCCTTAAGCTGACAGGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATG<br>TATAAAAATCAGAAGCATTCTTATACACCAATAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAGTAAAATA<br>CCTAGGAATCCAACTTACAAGGGACGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGAATACAAACAAATGGAAGAAC<br>CTTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGG<br>CTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATCACCAAGTCAATACTAAGCCAAAAGAACAAAGCCGG<br>AGGCATCACGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA<br>ACAGAGCCCTCAGAAATAACACCGAATATCTACAACCATCTGATCTTTGACAAACCTGAGAAAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAAAT<br>GGTGCTGGGAAAACTGGCTAGCCATAGGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGATGGATTAAAGACTTAAA<br>CGTTCGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCAATATCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCA<br>AGGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAATGAACAGGCAACCTACAA<br>AATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAAAAAAAACAAACAACCCG<br>ATCAAAAAGTGGGCAAATGACATGAACAGACACTTCTGAAAAGAAGACATTTATGCAGGCAAAAGACACATGAAAAAATGCTCATCATCACTGGCCATCA<br>GAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATTGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGG<br>AGAAATAGGAACACTTTTACACTGTTGGTGGGACGGTAAACTAGTTCAACCCTTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATA<br>CCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGACAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCTCAAGGACAAAATACCAAACACCACACA<br>TTCTCACTCATAGATGGGAATTGAACAATGAGAACACATGGACACAGGAAGAGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGCGGGGGGAGGG<br>GGGGAGGGATAGCATTAGGAGATATACCTAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CATTGTGCACATGTACCCTAAAATTTAAAGTATAATAATAATAATAAAAAGAAAAATAAATAAATAAAATTCAGTATCCCATTCTGATAAAAACCCTTAA<br>AAAACTGGGTATAGAACGACCATACTTGAAAATAATAAAAGCTGTAGATGAGAGACCTACAGCTAATATTATACTAAATGGAAGAAATATCCCTGGAAAT<br>CCTTCCCTCTAAGATCTGGAACATGACAAGGATGCCCGCTGTCATCACTGTTATTCAACATAGTACTGCAAGTCCCAGCTAAAACAATCAGACAAGAGAA<br>AGAAATAAACTGTGTTCAGATTGGAATGGAAGAAGTCAAATTATCTTTGTTTTCAGATGATATATATAATCTTATGTTTGAAAAAAAACCTAAAGACTCT<br>ACAAAAAAACTGTTAGAACTAAAAAATTCATTAAAGTTGTAGGATACAAAACAAACACGCAAAATCAGTAGCATTTGTATATGCCAATGGTGTGCAATGT<br>GAAAAAGAAATAAAAATTATGATTTACAATAGCCACACATAAAATTAAATACCTAGAAATTAACTTAACCAAAGAAGTGAAAAATCTCTATAATGAAAAC<br>TATAAAACACTGTTGAAAGAAATTGAAGAGGACACCAAATAATGGAAAAACATTTCATGTTCATGGATTGGAAGAATAAATATTGTCAAAATGTCCATAC<br>TATCCAAAGCAATCTGCAGATTCAATACAATCCCTATCAAGATACCAATGCCGTTCTTCACAGAAATAGAAAAAACAGTCCTAAAATTTATACGGAGCCA<br>CAGAATGCCTAG</font><font color="green"><u>AAGAGACAAAG</u></font>ctatcctaagccaaaagggcaaaactggaggaatcacatcacctgacttcaaattatagtgcagagccatagtaagc<br>aaaatagcatggtactggtgtaaaagcagacacatacaccaatggaacagaatagagaacccaaaaacaaattcacacactcatagtaaactcacttttg<br>acaaaagtgccgagaacatacactggggaaaagacaatctcttcaataaatggtgcagggaaaactggatatccatatgcagaagaatgaaactagaccc<br>ctatctcttggcatatacaaaaattaaatcaaactggttaaagacttaaatctcagacctcaaactatgaaactgctacaataaaactttggggaaattt<br>tccaggacattg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr1	180835934	180841992	2000146	0	-	AL162431; RIP_L1_chr1_177_01	ATTTGCGGCCGCTTTACATGGGGAAGACGGTGC	CATGATTTAAATTGTGCCATGCTGGTGCGCTGC	LINE	L1	L1HS	cggtgctcaagtaatacttgcaggtactagcacccaggatttaggagtccagtccagttttagctacacaaaagtcttaagtacacaaattgccaataga<br>gcagaactatataattcatagatttgctcattattaatctcaaggaaatcagctctttaaatatatgtatttaatgaatgtgaaatttttgggaagggga<br>actactatgtattaagccataatatttattttacttaaaaaatttttaaacaaagtaatactagtcattgtgagaatgctattctaaaaaaaaaaaaagt<br>cccctggccaccttctctttccatccctagagaccgaacattttcaaaatttgtagctacttcttctacttagcctccatgtat<font color="green"><u>TAAACTAATATGTGTA<br></u></font><font color="red">ATAAGAATAATCCGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCAT<br>TTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGC<br>ATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGA<br>ATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGC<br>TAGCACAGCAGTCTGAGATCAAACGGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGCAAACAAAGCAGCTGGGA<br>AGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAG<br>TAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCC<br>TCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGA<br>CCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAA<br>AGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCA<br>CCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAA<br>CCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAA<br>AACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAA<br>ATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGA<br>TTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAA<br>CGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAG<br>GAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCA<br>GAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAT<br>AAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAAC<br>CGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAA<br>TGACAGGATCAAATTCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCA<br>AGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGA<br>AAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAA<br>AGGGATCAATTCAACAAGAAGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAG<br>AGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAA<br>TTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAGTATACATTTTTTTCAGCACCACACCACACCT<br>ATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAA<br>ACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTCCATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAG<br>GCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGCGTGTAGAGGGAAATTTATAG<br>CACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGC<br>TAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTT<br>GAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCA<br>CCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGA<br>CACATACTCTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACC<br>AAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAA<br>AAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATC<br>CTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCCAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATC<br>CCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATG<br>CAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTA<br>TGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTA<br>TTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTG<br>CAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAA<br>TGTGCAAAAATCACAAGCATTCTTACACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAA<br>TACCTAGGAATCCAACTTACAAGGGATGTGAAGGACATCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGA<br>ACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAAT<br>GACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCT<br>GGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACA<br>GAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAA<br>ATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTA<br>AACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAG<br>TAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTAC<br>AACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAAC<br>CCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCA<br>TCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAACTCAGGAAACAACAGGTGCTGGAGAGGATG<br>TGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAA<br>ATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGATTATAAATCATGCTGCTCTAAAGACACATGCACACGTATGTTTATTGCGGCAC<br>TATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGC<br>CATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGC<br>ATATTCTCACTCATAGGTGGGAATGGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGG<br>AGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAAT<br>GTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAA</font><font color="green"><u>TAAACTAATATGTGTA</u></font>tagtgttatatcttgattactcaat<br>tttagatattattcactgactgatgattatgataaatttaatgaggattattatgaggattttaacacattcacatggctcactgttccctctccttcct<br>cgcaatatagtgataatgcaatttttgggtaaatccacattcactttattattaggcttaactgaagaactgcaatttcatgtgcctttcagagtcagtc<br>ttaagctattcaccatgaccaatgtggaaactggtgtcaccaaaaatgtggaagtctttcaggaggaatacacttatctttgaggtcaagagacacagca<br>aagttaagtgtgaatataaagatgacaaaaattgttcctggacctgggatgtggtgctt	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:XPR1:NM:004736:12/15	
0	chr9	98459865	98465894	2000147	0	+	AL354861; RIP_L1_chr9_095_01	ATTTGCGGCCGCAGGCACCTGACCTAATCCTGATCC	CCCACAAAGCTGAAAATCGGTG	LINE	L1	L1HS	tttttactacaagagaagtatgagtacatacgtaggcacatcagtgtgttttgtaccaaataccaatcaatattctttgaggtcttcagtactgtgaaaa<br>aggggatttatattagggctggaaaaggtttgctgggacttaagaaagaattttgtgtcctcccacacattaactcacaaggagctttcagaataccatg<br>tcccaaagggctcatgacacctctgtggactgcactgtatgactggcctctccattcctgagatgagatcattcacacactttctgaccaaatccatgtg<br>ccaggggtacaaaaaggaagacacagtcctgccctcaaggaacttctggtctaacatctgaaacagatacataaatagattgttac<font color="green"><u>AATAACGTTTGGTT<br></u></font><font color="red">GAGGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCATAAGACGGGTGACTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCTCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCGCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTGGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAACCAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCAAGTGGGTCCCTGACCC<br>CTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTG<br>TCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAG<br>ATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCT<br>GGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGA<br>AAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTGGAGAACTA<br>CGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGT<br>TTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGA<br>TGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATA<br>CAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAG<br>CCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAAT<br>ATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAG<br>CAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAA<br>ATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACA<br>CATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGT<br>ATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGG<br>TTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGA<br>GGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACA<br>TTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACC<br>AAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACAT<br>AGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAG<br>AATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCT<br>TTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAG<br>AAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATA<br>ACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTG<br>ATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAAT<br>ACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGA<br>CTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAG<br>ATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAA<br>CTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCA<br>AAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGT<br>TCAATATACGCAAATCAATAAATGTAATCCAGCATATAAGCAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAA<br>AATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAAT<br>ATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAG<br>TTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTA<br>TCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCA<br>TTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATGTGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGACAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AATGCCGCATATCTACAACTATCTGATATTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACGGTGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATAC<br>CTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTA<br>GAGTATAATAAAAAAAAATAAAATAAAAAA</font><font color="green"><u>AATAAAGTTTGGTT</u></font>tgtaggatgacagagatatgcaaagacttgtggatcaccggggacgctcagagaat<br>cacctgcgtggcgagtggagacagcttcagcttgggttctcagctcatagggacactgatttatacactgttcttgtgagtcatcattaagtttgggggg<br>agtcaaaagttattcaccgattttcagctttgtggggagttggcatccctaaccactacattgttcaagggtcatttgtgtatatatatgtgtgtgtctg<br>tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgcttttgtcacagaacaagtcatagcatttttttatgttcttagaaacacttcacaaatgtcat<br>ttttgattgctgcgtgaggagcatcctgtg	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr10	111572125	111578216	2000148	0	-	AL354951; RIP_L1_chr10_111_01;AC207482	ATTTGCGGCCGCGCCTCCATTAGCAGAAAACACTGG;NA	ATGTGGTATTTGTCCTCCCAGAAG;NA	LINE	L1	L1HS	atgcctgagttctagatgatgatgaatgataggattctgtggcaacaataatacatgatgccgctggtgttgctgtgttgaatttgccagctttccctgt<br>acagtcctaacaaactcaatgaagacctgcctcactgtgagggaccaaagagcaagtctccctggttgcctccattagcagaaaacactggttctgctga<br>caaggaaattacttagtcctttaaatcataatgtcatcttcatttctgagacaagaaggccagagctgcatcctcccaaccttcatagccacaaggactt<br>atgacccatttgaaggaacatctcaaggacatctctcaggcattgcttctgacagttgcatgtcactaacaggaaattgccagctc<font color="green"><u>AGAACATGGCTTTA<br></u></font><font color="red">AGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACTGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGAG<br>GGTTCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAATCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGAACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCAG<br>GATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTTAGAGTATAATAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACATG<br>GCTTTA</u></font>tttgtcttctgggaggacaaataccacatgttaaatgggaattaatctgaaggggaaaaagtattgttgcccttgcagctgactctcatttatg<br>ttttgttaaaaaaatcaccgtactgagatttaatttacaatacaataaaatgattcattttaaatgtacagtttaatttttttttttttttgagacaaag<br>tctcactgctctgttgcccaggctggagtgcagtggtatgatctgggctcactgcaacctccacctcctgagttcaagcaattctcgtgttttagcctcc<br>catgtagctgagattacaggtgtgtgccactacacctggctaattttttgtatttttagtagagatgggcttcaccatgttgattaggctgg	UCSC;UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr6	102091561	102091562	2000149	0	-	AL356438; RIP_L1_chr6_102_01	ATTTGCGGCCGCAATGTGATGGACCCTAACTGAAGC	TATGTCTGCCTTTGTGCCAGTATC	LINE	L1	L1HS	tatagttgtatatgtcatcagtatataaagtttataaagaaaaaataattttcagacaaataaggaagtgagctcaaattaaagaatgtgatggacccta<br>actgaagcagcaaatgtactgctatagaaagaatctatgttagttgattggctactaaatagactaataaattgacaaataaatgttgttttatttataa<br>agtatattttagtataactcaaatttccttggttttaaaaatatgagtacattactcaaagtgatctatagatttaatgtactctctatcaaaattccaa<br>taaaattttttgcagaaacagaaaaactcagctaaaacttcatatagaatctcaagaaatcctgactagccaaaacaatctt<font color="green"><u>AAAAAAGAACAAAGTTGG<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCAACACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGACTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGAGATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCTTATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGAGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAATAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAACAAAGTTGG</u></font>agatctcatagttcctgatttcaaac<br>ttattacaaagctagttaaaacagtatgatactggcacaaaggcagacatataaaccaatggaataaaatagagagctcagaaataaactctcacatatg<br>tggtaaaataattttcattttcaacaataaactctaacatatgtggtcaataaatgacaaaagaatagtcttttcaataaacagagatagggaaactgga<br>tatccacatacaaaagaataaagttggactcttactcttcaagatagaaaaaaaattaattcaaaaaacataaaaaacctaaatgtaagatctaaaacta<br>tacaacccttagaaaaaaacataggggaaaatcttcatgacattagatttggcaat	Other	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:GRIK2:NM:021956:3/16	
0	chr1	187566805	187572893	2000150	0	+	AL357559; RIP_L1_chr1_184_01	ATTTGCGGCCGCAGCTACAAACCTGAGAGCCCTCAC	TTATAGGGTAGGACCCTTTTTGGG	LINE	L1	L1HS	gggtacagccctccattctggctgctttcacaggctggtgttgagtgtttgcagtttttggaaacttacgagatcaaaagaaagctacaaacctgagagc<br>cctcaccctggaagacattcatacaatgtaatggactggactaattattaatgatggtgtatattcttttcatagaaaggatccatgttcaaaaactaga<br>ggttggcctgtggtgttatttgatacacacacacacacaaatatatatttatatgtatatacaacgtaatatatgtgtatatataatatataacatataa<br>aacacatatgccaggaactggcttataactcccagagcccttatcatagtcttttgttacaacattgggtgctttaggcctt<font color="green"><u>AGAAAACAGAATGCTCAG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGAC<br>CGGCTTAAAAAACGGCGCACCAGGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGCAGTCTGAGA<br>TCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAG<br>CCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAA<br>GTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCATGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAATTGGGTCCCTGACC<br>CCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCT<br>GTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCACCTCTCCTCCTCCAAAGGAAAGCAGTTCCTCACCAGCAACGGAACAAAGC<br>TGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAG<br>TTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTG<br>ATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTACCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAAT<br>ACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCA<br>GCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAA<br>TATTCAACATTCTTAAAAAAAAGAATTTTCAACCCATAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAA<br>GCAAATGCTGAGAGATTTTGTCAACACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACTGGTACCAGCCGCTGCAA<br>AATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCAC<br>ACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGGTGGATAAAGAGTCAAGACCCATCAGTGTGCTG<br>TATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGG<br>GTTGCAATTCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAG<br>AGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCAC<br>CAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>GAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGA<br>AAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGAAA<br>TACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>CATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGG<br>TTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTT<br>ATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCA<br>AAATTGACAAATGGGATCTAACTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>CGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCCTCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACAGGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAGTGGGAGA<br>TATACCTAATGATTGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAAAGTATAATAAAAAAAAAAAAAATTTAAAAAAAAATAAAAATAAAAAATAAAAAAAAATAAAATAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACAGAA<br>TGCTCAG</u></font>atcttctcctgccctccttttacccactccaatgcaggactttaatcttcctccacctttctggttgtgagtcatgagacctttcccaaaaag<br>ggtcctaccctataacccgggggaaggaatgctgacctcataaagcttctataaaaacccaagaggtcaggcttcagggagcttcatgcccctttcccca<br>tacctcaccctatgcatcttttcatatgtatcccttgtaatatcccttataataaaccaggaaatgtgaaaaaaggaaatcaactattagcaacaacagc<br>aacacaagcaacaccattcaatggtttaaaggctaggtgggctagggttatatatgcaatacttatatttgggcgtgatgttgatcagc	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr1	114039843	114045877	2000151	0	+	AL389921; RIP_L1_chr1_113_01	ATTTGCGGCCGCCTGTAAGTCCCAGCTACTTGGAGG	CCTCTGCTTGCTCATTTCCAGTG	LINE	L1	L1HS	catttttttaaagtaattgttatctaggccacattagccttcaagctacattgtctattgactgaggctccttagatctcttataaaatgcattatattg<br>cctgacttgcatattatattatctaggtaaagcaatgtaattaaagcttaactgaggtcatgggtggtggctcacacctgtagtcccagcactttgggag<br>gcaaaggcaggcagatcacttgaggtcaggtgttcaagaccaacctgggcaacgtggggagagcccgtttctacaaaaatacaaaaattagctgggcgtg<br>atggcgcatgcctgtaagtcccagctacttggaggctgaggtgcgtggatcacttgatcccaggaggtggaggttgcagtgagct<font color="green"><u>AAGATCACACCACTG<br></u></font><font color="red">GAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGG<br>AGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGA<br>GTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGC<br>GCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGG<br>CAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAG<br>GAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGAGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACA<br>GCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAG<br>CCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAA<br>ACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAG<br>AACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATT<br>TTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAA<br>TTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGA<br>AGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAA<br>TAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAAC<br>CAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAA<br>AGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTC<br>GGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAA<br>AGAAAAGAATTTTCAACCCAGAATTTCATTTCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAGACAAGCAAATGCTGAGAGAT<br>TTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGT<br>AAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAAC<br>TTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCAT<br>CTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCT<br>CTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCT<br>AAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGAC<br>TTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAG<br>ACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATCGACCACATAGTTGGAAGTAAAGC<br>TCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGC<br>CGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGA<br>ACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATC<br>CAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCA<br>GAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAA<br>GACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAG<br>AGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAAACAGGAAGAA<br>GTTGAATCTCTGAATGGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCG<br>AATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGC<br>CAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAA<br>ATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAAT<br>CAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTT<br>CATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGG<br>CAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAA<br>TCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCAT<br>TGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAAC<br>AACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGG<br>ACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATAT<br>CGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTA<br>AAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTTACTTCAAACTATACT<br>ACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTA<br>CAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGA<br>AAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAG<br>AAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGA<br>TCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCT<br>GACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGAC<br>ACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATA<br>TCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGG<br>GACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTA<br>TATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACTCGTATGTTTATTGCGGCACTATTCACAATAGCAAAAACTTGGAACCAACCCAA<br>ATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGG<br>ACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGA<br>GATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGGTAGCATTGGGAGATATACCTAATGCTAGA<br>TGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATTA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATCACACCACTG</u></font>cactccagcctgggtgtcaaagcgagaccctgtctcaggaaaaaaaaaaa<br>aaaaaaaaaaaaaggcttaattgattgaaccagattcgagaaaacagtgctaaattataattttctcaatactgtaaatatttttcaatcttcagcttca<br>ttaacttctataatttgaaattatcccaattattacctgacatgtactaaaattccctaaaatggatcttgagtaacattttcacagtacgataattttt<br>ctctctgtatatatttatatagtcacatatatgcacatacattatacaagcattacttttctataactgtaaggtcagaatttgaagttgtgttttcttt<br>atctttttatttccaatacttggcatcaagttgat	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:MAGI3:NM:152900:1/21	
0	chr11	95169382	95175439	2000152	0	+	AP000652; RIP_L1_chr11_094_01	ATTTGCGGCCGCAGCAAACTGCTGCCAGTGTGTC	GGGATTATCTGGTTGCAGGAGTAG	LINE	L1	L1HS	gcacatcctctgtctcaaacttcccaacagttttaggaggatgtttttacaggatcatgttaaaggtgccggaacagaggctacaagatattaagtaact<br>tgtctgcagttattcaacatttggcattggggttgagatttgcacccaggcttggctgacttcacacttgggtttttaacttctccattaaaagaacatg<br>gataaaaatgtaaggaaagaaaaaagaagacaagtaaaagaagaaaggaaacagtgaggggaagcttcaggctaaggctaaacagattgctaagccatgt<br>agtagaacacaggtcagcaaactgctgccagtgtgtcacatccatcctgatgacctgtttttggattgcaaaatggtttttacatttttaaag<font color="green"><u>AATTGTA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACAGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAAA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCAGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCTCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTTGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGCTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAACTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAGTGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAAAAAAAA</font><font color="green"><u>AATTATA</u></font>aataaaacaaagaagaatatgtgagaggagctga<br>atgtgccccataaagcctaaaatatttaatctcttgtccttttttcctgcaccaggccagatatgactcctgggcctcactaccctgaggttaactgtag<br>gtgaaaaggaaggggaaggagatcagcctttggtaaaaatttcctactgctaccagcgtttgacatagattatctaagttaattcttaaaataaccctga<br>gacatggtttgcacttgtcttccctattttagccagagggaaaacctgctcaatgattaattcgcttgtctaaattcccagctaggaattggtagagatc<br>agaatgggtctcctgggatcagacttagacttagagctcagacttaagtctcttgggct	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr7	110883571	110889602	2000153	0	-	AC004142; RIP_L1_chr7_110_01	ATTTGCGGCCGCCGGGAATGTTGAAAGAGGTCATC	GGCATGTTGACAGGAATGTACACAG	LINE	L1	L1HS	ctgtttgaatatcctttatttctttctcttgcctgattgccctggccagaacttccaatactgtgttgaacgggaatgttgaaagaggtcatccttgtct<br>tgttttcaaaggaaatgcttctaacttttgcccattcagtatcatattggctgtggatttatcatatatggctctggttattttgaggtatgctctttca<br>atacctagtttattgagagtttttaacatgaagggatgttgaattttaccaaaggccttttctgggtctgttgagataatcatgtgttttttgcctttag<br>ttctgtttatgtgatgaattacaaatatgactttctcttctaaatggatagttttctttccttataagcagtttgtaaatatttagt<font color="green"><u>TAAAGCAACAAGA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCACCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACATCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAATCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCGGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTATCTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGCACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAACGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCTTTCCTTACACCTTACACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAA</font><font color="green"><u>TAAAGCAACAAGA</u></font>aatatagagttgaacactttacttctataagcatataacttttaaaattatatat<br>gtaaaacatgaaggactggaaaacctattgtggaaattactagtccatgcaagaatataaaatttcaacagcttgggaatttactagtactgtgtacatt<br>cctgtcaacatgcctcagttatgtcatagtttttaattctacaagagttttagatagagaattagtatttattgagaactcttttagcataataaatatt<br>ttataattcaatatataataaatacttcacattcagaatatgtatcttgggaatgattgaatggctggtgagcaaggcaacgtcatgccatacatttaaa<br>aattcctgttgtttcttctcaaaacaactact	UCSC	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:IMMP2L:NM:032549:3/6	
0	chr17	68357431	68357432	2000154	0	+	AC011990;L1HS74; RIP_L1_chr17_065_02	ATTTGCGGCCGCTGCCCACATTAGAACAGGATGC	CTTTAAGAAAAGTGAGGAGCGGTG	LINE	L1	NA	ggaaagatgattgggttaggaaagttgagcagttatttagaaatgagcacacgagctggggagacctctccagagaaggcagtggagaatcaaagaatag<br>agggttgtacaggagatgctttttgggaatggctgtttcaggtatcaattaaagtggaaaggtagggttgtttttgtaaaaaagatccaagacaatggag<br>gatttgcccacattagaacaggatgcaaactacaggacggcagaatgttacagaaacgaaaaatgtgtttcagagtgattggagttagcattctggacgt<br>atttcttacagagttgactagcactattcattttccaccctccaacagttgctgaatgattttgttttaagaaaaaataaacaaaaagtacttagcctca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aggaaaataacttagggattttctgcatcttgaaatgcatgcttgtttggaacaaacagccgataaaccaattctcttaa<br>ttatacacaaactgcctcacaattatgtactaaccgaatcctgagtggacttggtagacacttgctgcttatgaaagaaacactacgcagaggcaccgct<br>cctcacttttcttaaagaaaaaaaatgcatgactttaaaaaaagagtttgaaaattctcagtgatcttgttccctcatttatttttccacaagctgtgtc<br>taaattcaggcaaagttatcaacttaccatttaatgatatggtcacttaaacaaagcataaccttaacagaccttcaattcaagcttgcattacacatag<br>tttccaaaagctgttttttt	Other	<UL><LI>Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HHJr. Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5280-5. Epub 2003 Apr 7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12682288">PMID:12682288</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr10	13259269	13260740	2000155	0	+	L1HS493;1; RIP_L1_chr10_013_01	GACTACCTTTCTGCGTATTCCTTTC	GTCTAACAGGTACACGAGACTCCAT	LINE	L1	L1Hs	taggtaaaccaactggtattaaacaaagcatggcatccaaccaggaggacagttttgtgtgaatacagcgcaaccttcctggtgtcgctggctgaacagc<br>cttcagggctgacgcaggatctgagctagcagcaggctgagcttgcactcctgcccaaaaacatatcactggtcaaaaataaattctaaagttttttaaa<br>aaaaataaaaatggtcagcacagtgttcctggcggaaaaataaataaataataaatagaaaaaagtttatatacttagatgtatacagatcactcaaagg<br>aaactcaagacaatggtgataatggtttctttcaggagacccaggagggactacctttctgcgtattcctttctgttcttt<font color="green"><u>AAAAATGTTAAACCATGGG<br></u></font><font color="red">GTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCA<br>TATTTTTATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAAAGTATAATAATAATAATAAAAAAAGAAAAAAAAAAAAAAAAGAAAAGATAAAAAAAAAAAA</font><font color="green"><u>AAAAATGTTAAACCATGGG</u></font>tgtgtatta<br>cctgttagactattttttttttgagatggagtctcgtgtacctgttagactatttttaattttaaaaagccaagataatgtggaaagtgaataaaacatt<br>tttaaacatttataattttaaacattataagatcacagagtatatcagagttctcaattgtagactagaacatttatatttaaccaatttgttttcagag<br>aaatcccttcaaggctagagacaacttttttttagagacagggtcttactctcttgcccagtctggagtgcagtggtgtcacatagttcactataccctc<br>aacctcctgggctcaagcaatcctcccacctcagtctcccgagtagctggaactacaggcatgtgtcaccat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Buzdin A, Ustyugova S, Gogvadze E, Lebedev Y, Hunsmann G, Sverdlov E. Genome-wide targeted search for human specific and polymorphic L1 integrations. Hum Genet. 2003 May;112(5-6):527-33. Epub 2003 Feb 25.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12601470">PMID:12601470</a>.</LI></UL>	E:Library screening:TGDA; E:Insertion-specific detection:PCR	NA	61	1603	111	NA	intergenic	
0	chr4	88270204	88274298	2000156	0	-	22; RIP_L1_chr4_088_01	NA	NA	LINE	L1	L1Hs	ggaagggcctaaagattggtcctgacatatgaacctctttgaggctaagctggtactaaagtagaccccaaagatgaagttggttttaatatagaaactt<br>attacttctaattagaagagagaacatgttcctcgttaaatacctgtttacatttcagacaccaaataaaatgtcattttcttaaacctcacaacaatac<br>ttttggggagatgttattagtccctcttcagtagatgagagagatctgaggtttagagaaattaaattacaagttatataccctttggcccagtaatccc<br>cctttatgaatctacctgagggagataattatccaaaagtgaaaatatgtgtgcccgaggatgcttattgctgatttgctgtt<font color="green"><u>AAAAATCCAGAATACTA<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGGAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAATTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA</font><font color="green"><u>AAAAA<br>TCCAGAATACTA</u></font>aaaacaaccctaaaatcatcactaggagatgctattgctcccaataatcaatacaatttactgtttactataaaggtataatacagca<br>taatctgggtttattggaattaaatgtaaatcaggtgttccaattatttttttaagctcagttatttttgttaaacttgaatttcaacaaatagttttta<br>aaattttttaaaaatatacatatatatattttttcttttagagacaaggtcttgctttgttccccaggctgatcttgcctcagtgtcccaagtagctggg<br>ctataggcgtgagctgccacacccagcttagcacacttttaatctttgccagtatgataggaaaaaaacagtacttccatgttatattaatatga	UCSC	<UL><LI>Buzdin A, Ustyugova S, Gogvadze E, Lebedev Y, Hunsmann G, Sverdlov E. Genome-wide targeted search for human specific and polymorphic L1 integrations. Hum Genet. 2003 May;112(5-6):527-33. Epub 2003 Feb 25.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12601470">PMID:12601470</a>.</LI></UL>	E:Library screening:TGDA	NA	NA	NA	NA	NA	intron:HSD17B11:NM:016245:5/7	
0	chr9	46129231	46129798	2000157	0	-	25; RIP_L1_chr9_044_01	NA	NA	LINE	L1	L1PA2	gtatctgcctctgcttctatcactggtgatctggggaccatatgcttttcggataagagatgagcctcttagaggtcaatttgtcaattcctctgtctcc<br>tcttggggtggcccctttgtaaattctaatagctataggaaatgaaaagggtgagagtctctgaaattctgggatctcaagagaagctaattctaagtga<br>aaacctcccggactgaagcagtgcctgtggtgaggggatgtccaaggttgagaagcagctctcagctgagtatccctcccctctcttgctctggcagaag<br>tgtcagccctccccttatctcttgtatcatttcctagggcctgcatctcaacctctggctacacattagcaacctggggagtttt<font color="green"><u>AAAAATCCAGATGCC<br></u></font><font color="red">ATGGTGTATATGTGCTACATTTTCTTAATCCAGTCTATCATTATTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAATGCCGCAATAAACA<br>TTCGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATC<br>CCTCATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCGTGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAA<br>CTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACAAGTTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAA</font><font color="green"><u>AAAAATCCAGATGCC</u></font>caggccctactacaggc<br>caaccaaattggaatctctggaggtgggacccaggcatcagtattttaaaaaacttgtggctgggcatggtggctcacacctgtaatcccagcacgttgg<br>gaggccgaggcgggcggattacctgaggtgaggagtttgacacaagcctggcaaacatggtgaaaccccgtctctattaaaaatacaaaaattagctggg<br>catggtggcaagcacctgtaatcccagctactcgggaggctgaggcagggataattgcttgaacccaggaggcagaggttgtagtgagccgagatgtgcc<br>accgcactctatcctgggtgacaagagcaagacaccatctcaaaaacaaaaatgagcaaacaaaaaaa	UCSC	<UL><LI>Buzdin A, Ustyugova S, Gogvadze E, Lebedev Y, Hunsmann G, Sverdlov E. Genome-wide targeted search for human specific and polymorphic L1 integrations. Hum Genet. 2003 May;112(5-6):527-33. Epub 2003 Feb 25.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12601470">PMID:12601470</a>.</LI></UL>	E:Library screening:TGDA	NA	NA	NA	NA	NA	intergenic	
0	chr3	105473861	105474122	2000158	0	-	L1HS6; RIP_L1_chr3_106_01	TTTATTTCCCTGCATCTGATTA	CCTGTTATTAGATAATGAGTTCTAGTC	LINE	L1	L1HS	tcattcacaccagtagtatacagaagttcctgtttgcaaacaccctggcttctgttgatgttcaccctttgttgtatgaaatgtttttcattttttccta<br>tcagttgaaactaaaaccctgtagccttttatgaactagtggtttcatgaaaatattttacctttttttttttaaaagaaatcattctcctcacactttc<br>tattttccattcttcttaccttttcttaaaattgcaggattttcaaattagaatatctaatacacttctccacatttacacaggagaaaacaagcctgga<br>agattaagtgatttgtcaactactgaccagctgacacctttccagatttatttccctgcatctgattaatcccattgtcttt<font color="green"><u>GAAAAGATACTGTTTTTC<br></u></font><font color="red">CACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGA<br>GGGGGGAGAGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTG<br>CACAATGTGCACATACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAGATACTGTTTTTC</u></font>aagactttaaagaggattac<br>tattgttttttggtagacagactagaactcattatctaataacaggattataacatagtcttatttatcatgttcttatctctcatgatattatatgaac<br>agaactatcactttaacaaaaagtcattaatagatttctgtgtaatagataggtggtagtaagccatcaataaatggcagttcttactcttatttgaaat<br>aaaaagatcctgaaattatattattattacaggtgcatggctatccattggtcatgtattctattctttgtagattgacagttacttatacttgttcact<br>gtattttaaaagcgattcagcctgcaacttaagtggtttataattgtaagggtcaatagaat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	54	402	122	NA	intron:CBLB:NM:170662:4/19	
0	chr7	69828329	69828466	2000159	0	+	L1HS7; RIP_L1_chr7_069_01	CCTTAGACATATTCTTGGAAATAG	CCAGAATATTTGGGTATTTCATCTG	LINE	L1	L1HS	aagataaattatctcaataactctggaatgacatcaaccccacttagaattaaaggaacagaagtctttgtgataaatattctctcagtctttccctctc<br>tgtgtgtgtataatatttttgttaatacacagatggtaatctaatgagatgcatttattcctcctgatatttgtaagtacagtgtatcttttcattgtat<br>taactgttgttctacatctgtttggatccattctgtggattcaaaatcatgtagatcaccagtctctaatggttggacatttaggatttatctggtttct<br>catctgagtgtttattagatgactattggatttccttagacatattcttggaaatagaattgctatatcaaaaattatgg<font color="green"><u>AAAATCTGAAGCTATTGATA<br></u></font><font color="red">TACCTAATGCTAGATGACACATTGGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATATAAAAAAAAGAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCTGAAGCTATTGATA</u></font>gtcttatttttaattgctctaaaataagtattaatttcttaga<br>aagaattatttatttaaattaagatatttatgcagatgaaatacccaaatattctggtttgctgtttatttttatcccataactcaacgggtatttatat<br>aattaattatacttttcaagtttttcacccctatgttctacatatattgctacccatgtactccatactctattcttttatgcttctttgaattctgtaa<br>tttaaaaaatcaaagcaaactaaaaacaaaacaattcagctcaaataacattttttcctaaaaacctaagtctcccagcttctttgaactcctccttcta<br>tggactcttacagtcctcctctagcctatttatctca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	326	169	NA	intron:AUTS2:NM:015570:4/19	
0	chr4	15843170	15849242	2000160	0	+	L1HS18; RIP_L1_chr4_015_01	TTGAACAGCTTAGACTCGTCAGATA	GCAGTTAGACAGGAAAACAGAAAGA	LINE	L1	L1HS	ttcaaaactgagacccctcactcatttttaagcagttgtgaccaatggtgtaggtaggtactcattggtagaagcatctttggagatttttccacgtata<br>atagcttggaacaagattgatgcagagaggaaaagctgttcaaaggaggtagaagctgagatgctagaatattgttcctgtttccatgtcactaccttct<br>ctcactaaccacatcagaaaagcagaaggatagattctggagactctactgatggcttttgtttcccaaatgacctgaattccccatgagtcaccttgct<br>tctatctggaaacagccagaaaaggccatgagcattctacagcagttagacaggaaaacagaaagaatgaatgaaggagcaactgt<font color="green"><u>AAAAGCAATCTTGC<br></u></font><font color="red">GGCGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCACACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCGCGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGATTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCTTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGAGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACATGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAAAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGAGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGATGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACTGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTCCAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGG<br>CTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>GCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATAACCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAATAAAAAATAAAAAACAACTCTCAGAAGCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCAATCTTGC</u></font>agatatctgacga<br>gtctaagctgttcaaagatatgttgcatggagaaaatagaatagtagaaacctagacaaagactgggaaataaagatggtcttatccccaatactctttt<br>accttttttgtcttatgaaacattaacctttttctcataaatgaccagaagacctttatattataattcgtcaactcccctcatttgtgtctgctttagg<br>ctccaagtgagctcactcattctccatctggaaagaaaatatgggcatggcttccatttggacttgtacagacagtggcccataatgggaaccaggtgac<br>acatcacaagggcaggttctgacacctcttccttccagaagcccaggggtgctggcagctgcttctgaggatc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6174	87	NA	intron:CD38:NM:001775:7/8	
0	chr4	21160870	21166654	2000161	0	+	L1HS39; RIP_L1_chr4_016_01	AGAACCAATCTTGCCCACAC	TGAGGAGTTTCTGAGTAACCTGGTA	LINE	L1	L1HS	tgggcttattcctgaaagggccacaagtgtgctttggtgttggcctcagacgacttctgcaactgccaaactactaatcacatgtctttccaatcaatga<br>ccacattgtcattaaaagcaagactaccaggcatcactgctattgcatttactttgaaaatacaaggctggctgtggaatgttaaggcaggtagaccatt<br>gggggatgggaagcatttccttagatggggaactgaaggaagggaaggtgttctgaggagaggggaaagcagaaataaaaactagaaaaaggaaaggtac<br>aagatgtaatgaggagtttctgagtaacctggtatattagtttgataggactcccatagcaaagtaccgcaaagtgggtggctt<font color="green"><u>AGAAATTTATTGTCTT<br></u></font><font color="red">GGCCATTTTCCTCCGGAAGTGCGGATCCCAGCGGCGGTCCTGTAGCTGAGCAGGCCTGGGGCTTGGTTCTATGTCCCTGTGGCTATGTTTCCAGTGTCCT<br>CTGGGTGTTTCCAAGAGCGGCAAGAAACGAATAAATCTCTGTTTTAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGT<br>GAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCA<br>CACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACG<br>CACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAATGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGG<br>GTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCA<br>GGCTTGCTTAGGTAAACAAAGCAGCCCGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGG<br>GCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAACTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGC<br>TGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTG<br>ACACCTCACACGGCAGGATATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCC<br>ATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAATTGGAAACTCTAAAACGCAGAGCGCC<br>TCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAA<br>ATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAAATTAGAAGAATGTATAACTAGAATAACCAATACAGA<br>GAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGG<br>GTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGG<br>ACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGA<br>GAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATATTCCTCGAGAAGAGCAACTCCAAGACACATA<br>ATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGACGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAG<br>CGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGC<br>CAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTG<br>AAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACT<br>AATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAG<br>ACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGCGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAA<br>GGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAA<br>GAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATT<br>CATAAAGCAAGTTCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACG<br>AGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACATAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAAT<br>ATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAC<br>AAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTG<br>AATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCAT<br>TCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCACAATTGACACCCTAACATCACAATTAAAAGAACT<br>AGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAA<br>AAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAG<br>ACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGA<br>AAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTGAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAA<br>ATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCAT<br>TCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTAATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACAC<br>AACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAG<br>CTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAG<br>ACAAAAACCACATGATTATCTCCATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGG<br>GATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCAGCACA<br>AGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAG<br>GAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAA<br>CTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTC<br>CCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGG<br>AAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAG<br>ATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCC<br>AAGTCAATCCTAAGCCAAAAGAACAAACCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGT<br>ACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAA<br>GCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACA<br>AAAATCAATTCAAGGTGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGG<br>GCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGA<br>AACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTC<br>AAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACAGTTCTCAAAAGAAGACATTTATGCAGCCAAAAAAC<br>ACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAA<br>GTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTG<br>TGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAG<br>ACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTG<br>GCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAA<br>CTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTTATTGTCTT</u></font>atagt<br>tgtggaggctagaagttcaagatcaaggtgtgggcaagattggttctttctgagagctatgaagaagaatctcgttgatgcctccccctagcttcttgtg<br>gtttgctggcaattttgggcattcattggcttgcagatgcatcacgtaatttctgccttcatcttcacatggcattctcgctgtctgcatgtctgactcc<br>aaatttcccttttctatgaggacaccagtaatactggattagaggttcactcctctggtatgacctcatcttaattatgtctgcaatgaccctatttcca<br>aataagatcacattctgaggtattggggcttaggaattcagcatatgtattttggggagcacagttcagcatgtgacat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6337	155	NA	intron:KCNIP4:NM:001035003:1/8	
0	chr3	4080896	4081553	2000162	0	-	L1HS73;L1HS178; RIP_L1_chr3_004_01	ATAAGGAGCCTAGGGAAGAACTTTT	CAAGCATGCCTGAAACATCTAT	LINE	L1	L1HS	acataatttgacctgttgttttatttattttcccaagctttattgaagtataattgacaaattaaaattgtatatatttaaggagtacaaaatgatgttt<br>tgatatatttccagattgtgaaatgtgaccaaaattaagctaatcaacatatctatcaccttacatagttatctctcttttgtgtgtgtggtaaaaatac<br>ttaagatctactcttttagcaaattttcaagtatacaaaacattttttttcttgagacaggtctctgttgcccatgttggagtgctatggtgtgatcatg<br>gctcattgcagccttaactcctgggctcaagtgatcctcctatctcaggctcccaagtagctgaaattataggtatatgccaccgtgtccagtg<font color="green"><u>AATTTG<br></u></font><font color="red">AAAATTTTTTTTGTAGAAACTAGGTCTCACTGTATTGCCCAGGCTGGTCTCAAACTCCTGGCATCAAGTGATCCTCCTGCCTCAGCCTCCAAAAGTGCTG<br>AGATTATGGGTATGAGTCACCATACCTGACCATACAAAACATTATAATTAACTATAGTCATTAGGACCTATTGTTTTTAGAATATTGAGCTTTCTTCACC<br>TTTTAATCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGC<br>AGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACAC<br>CGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGG<br>GGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCAC<br>AATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTTG</u></font>catagatgtttcaggcatgcttgaaggaagttatag<br>atccatttttaggatatggattatgatatatattaaatgtattttctgtatttcaattctctgtaatttttttctacttgaactataaaaaattaagggg<br>ggagtgctttaatgtttgccattgctgttgcatttaggtagttctcttttcaaacaaaatgtaaatattatgatatgctattttgtttataaatggttaa<br>gttgctgtcttaattgtgagttagtaaattaatctgtttatgctctttattgcttttttcttgaattaagcattgtctgatactaatatcgcaacccctg<br>aactcttttgatttgcattttcctggtaaaacttagctatcctgagcatacccagtgg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	55	1126	462	NA	intergenic	
0	chr20	12781657	12787692	2000163	0	-	L1HS110; RIP_L1_chr20_012_01	GGATTCTGACCTTATTCTAACAGCA	AGTTGACTGTTGGTGTTGATTGTGT	LINE	L1	L1HS	tagctgggattacaggcgcccgccaccacgcccagttaatttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtcttgatctc<br>ctgacctcgtgatccgcaaaatgggatcaatctttttctaaaattatcttttagttataaaaggaagacttgcaaggagcgctgctgctatgattccatg<br>ttagaccttcatgcagaactctgtaacctagctctttatgggtaagaattgtcccttgttcattattttctaattattaaggattacatcatttccagtt<br>gactgttggtgttgattgtgttttattacattttaatcctaggaatattaagaagccacatgtggttggtgtaggttgctgtctt<font color="green"><u>TAAATCCAGTGACCC<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGCGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGAAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATGTTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTGTTCAGGAAACCCATCTCACGTCCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTTCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAACGTCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACTAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCGATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAGCCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAGTCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCATAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAACGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAACAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACGTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>TGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>ACATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAAGAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAATAAATAAATAAAA</font><font color="green"><u>TAAATCCAGTGACCC</u></font>tagtggttttattttgtcttgttttttaaacacaaatctgactggacgg<br>ctcgatggttggaaactcatcagcagcttcccattgctgttagaataaggtcagaatcctcaacctgccagaagcatccctgccctttgtccccacattc<br>ctaccctttacaattagcctggcttataagggctgcatgtgaagaaatacacatattttcttttccactgctaaaattctcacttgcattcttggtgctg<br>tgagcagaggtggtgtctgctgtgttcactccttaaatacatagtctagcactgtgcctggtacatagcagatgctcattacaaatattttaaaataatt<br>cagtaaccgagtaaaacagtctaccatgttaataat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	6263	212	NA	intergenic	
0	chrX	125077721	125077946	2000164	0	+	L1HS125; RIP_L1_chrX_124_01	CCTCACGTTTCTCCACATTGTA	TTCTGGCCTTCATAGTGTTTTA	LINE	L1	L1HS	aactattaactttttaatgtactccttgactagagtgtcatggtcctgatatgaaaaaaagaaccaaatatgcctaaatcaatgaagccttattatatta<br>tgcatcatctctcctcagtgtatgtgctgtatgtaaatatctcatatactgatggcaatgcttaactgaatatctaatattttaaagtgatattgttttg<br>ggtcttataataaaagtgcaatttaatatactagtattattagacaagtaggttaagaagatgccatagacataatgaatcggggtttcaaccacatttt<br>gaaaagaaaccttacaaggtatcttggcataaaattctggccttcatagtgttttaaaaataatagttgttcaataacgttttattgcat<font color="green"><u>AGAAATTGAA<br></u></font><font color="red">CGTTATTGAACAACTATTATTTTTAAAACACTATGAAGGCCAGAATTTTATGCCAAGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTA<br>ATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAG<br>TATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTGAA</u></font>tgaaattacaatgtggagaaacgtgaggttagagagatgtgagttagaaaacttcaaaacatac<br>atgaagagtattggttaaatagatgaaatttatgtctgaagagtctttatggggagctatatagctcatttattgggcttaatgacttacatttttatca<br>acaaatttagtttagacaaagaacataaataagtttatcaggtttgtggaagacgtagcgtggcaaaatacctaatatagaatcacgatttaatgagaac<br>aatctgagaggctgtaatgattagtaaaagctacagtgatggactctactaagtcataaaaaattaactgcaaatgtgtaagggtaaaacttcctaagat<br>ctgctcctgtaaaacagatattttca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	332	96	NA	intergenic	
0	chr6	66787565	66788301	2000165	0	-	L1HS157;AL049842; RIP_L1_chr6_066_01	ATTCAAGTTCCAGTAAGCTGTGTTT	GAACTTTGGAAAATTCACAACTACC	LINE	L1	L1HS	acaataatagtcggcgacctcaaaataccatgcagcaatcgacagatcagccaagcaggaaatcagtgagcaaacattgcacttaaattacactttatac<br>caaatggaccaaacagaaatacagagaacattctatccaacagctgcaaaatacacattcttttcaagtgcacaggagaccttacccaagatagatcacg<br>ttaggctgaaaaacatgtctcaacaaacataagagaattaaaatcatatagaatatattttctgactacaatggcacaaaactagatatcaataaaaaga<br>ggaactttggaaaattcacaactacctgaaaattaaacaatatgcttttgaacaaccattatgtcaatcaagaaattaaaggggaaat<font color="green"><u>TAAAAATATGTT<br></u></font><font color="red">GAAACAACAGGTGCTGGAGAGGATGCGGAAAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCG<br>ATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACA<br>TGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACA<br>TATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATC<br>GCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGA<br>CTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTA<br>TACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAATAAAATAAAAAAAAATAAATGAAAAAAAAA<br>AAAATAAAATGAAAGTAAAATGTTATTTAAAAAAAAA</font><font color="green"><u>TAAAAATATGTT</u></font>aagataaacaaaaatagaaacacagcttactggaacttgaatatgttaagt<br>gaaataagccaggcacaaagaaaaacgtcacattttctcatgtatttttgggatcaaaaaattaaaataattgaactgataaacatagagagtagaagga<br>tggttagcagaatctgggaaggttagtggagggttgcacagcgggtggaggggcagagatggggatagctaatgggtacaaaaagttgaaagaataagat<br>atactatttgatagcacaatagggtgattatagtcaatagtaacttaattgcacatttcaaaataacttaaagagtgtaactgaattgtctgtaactcaa<br>ataacaaatgcttgacgggatgaacaccccattctcc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	60	892	143	NA	intergenic	
0	chr6	125609792	125610662	2000166	0	+	L1HS160; RIP_L1_chr6_125_01	CTAAATAGGCAGAGGAAAGGAAAAC	TAAACTTCCAAGAGATCAGCACTTC	LINE	L1	L1HS	ctgaacagctgatgtggggcacagacaggggagggggagaaaggggcagggaggtgacccgaggcccactgatggggtgctggcagccctgaggctctgc<br>agagcctggtggccagggcggctgtgaccccagtccccacggcacagagtctctgaatcagtgtttcgcagccttctggtaggacaggagaggactcaga<br>ctggggtttcaaagagcaacagagggacaaggagtccaagcaggatggagattcaaattctaggtcctgaaaatggaggactaaataggcagaggaaagg<br>aaaacaggaagattaaacatttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaag<font color="green"><u>AAAAAAACAAA<br></u></font><font color="red">CAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACACTTATGCAGCCAAAAAACACATGAAGAAATGTTCATCATCACTG<br>GCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAG<br>GATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCCATTCCTCAGGGATCTAGAACT<br>AGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTAGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAACTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAACAAAACAAAACA</font><font color="green"><u>AAAAAAACAAA</u></font>aaaaaaacatttccttct<br>tcctggggaaaaggttggccctgagtgaagtgctgatctcttggaagtttatcttttgcatcttcccctctccaacctcctagtgactctccctccaggg<br>ttctggggtccttatgctgctctacatcaagccccacctgtactttgaagaatgaattggggggagacatttttaaaagggtacttgttaacctaactgt<br>atctccaattgactgaacttctgacaatgtggagagaaaacttggggttagaaacaatccaaggacggtggggtgtactaggcatttcacatgcaggaga<br>ggctcccctcacgccttggggctcaaaaggacatttctttaaggcaaaatgcaggtggtggagaagacatc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1071	99	NA	intron:HDDC2:NM:016063:4/6	
0	chr14	20554478	20554658	2000167	0	-	L1HS131;L1HS173; RIP_L1_chr14_019_01	CACCATCTAGTGATTTTATGTTCTGC	AATAATCCCCATTGACTGTGTACTG	LINE	L1	L1HS	aaaaaatttaaacatactaagaccctcgttctctaagaatgtcttatttggcctagattgctagattattttcttaactccaaatacaaaattacaagtt<br>ttcttttttattaattgcaataaaatataattctttgcaattaaattttcccctttttagccctttctttagttatgattttgggatttgtgttttatta<br>cttatgatcctatataatattgtaaatgccaatagtgtgatagacatattatgtatgtagagtaattaatatatcaggattatgtaacctaccagtttac<br>agttacctttaagaagtaacaccattatgaaatcctggatacttaatcttcaccatctagtgattttatgttctgctctgggttt<font color="green"><u>GAAAGGCACAGAGGC<br></u></font><font color="red">GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGGCACAGAGGC</u></font>ataa<br>aggagaaaactaatttcattgttattacattcctcagagactggcagtacacagtcaatggggattattaaaatatcctttatgccattatggaaaatgt<br>aacactgtattttacctatcaaattggtgacattttaaaggcaacagtcagtactcaggagggtatagaaagagaactagagatgaattatgagattttt<br>gtgtgatagtcatacatactattgctgaaattattttccacaataaacactgataactattctattcatgcaaaatattaatatttattctgtgttagta<br>atcttattttatatggacaaataaaaatgtatgcatttattatgtgcaacatattttaatatatgtatacaccgtggaatg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	381	179	NA	intergenic	
0	chr3	81769894	81770409	2000168	0	+	L1HS177; RIP_L1_chr3_081_02	CAAGTTCCTCACCAAATGAAACTAC	TCCATTTTACTGATGTTGAATAGGC	LINE	L1	L1HS	tgtgtatgtgtgtgtgtgtgtatatatatatatatatatcttatatacacaaacccattgattttacagccaataacctaactccgatgaaacagaatag<br>gtctgaaagcacaggtacagtttggcaagtacagtggtcctctgcattgtgtgcatgtctcaatttattacatctcctccattacctattttattctttt<br>aactatttacccaaattgaaattgagataaggtatttaaatgttactgagcaactctactctgtaggtcttgtaatgatgtaatgtatgaatgtaaaata<br>acactgatacatttcacttaccatattatcaagttcctcaccaaatgaaactactataaccaagagcataatgctacaagcagattta<font color="green"><u>AAAGAAAACCCA<br></u></font><font color="red">CATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCA<br>CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAATAAATAAATAAATAAATAAATAAATAAAAACACAT<br>GAAAAAAAAAAAAAAG</font><font color="green"><u>AAAGAAAACCCA</u></font>aagctaaatttcatgtaagtacaactaaatctgtgtgctaataatgtcatactgatacttaatttagtagcc<br>tattcaacatcagtaaaatggaaactttaaattcacctaagccttgtattgcttatggggaacagtttttcaattctgtgatcccaaagtgctctgacca<br>gacatactgatacaaataattactgttttggcctattcataattaaaacaagtgaaatagtgaactcacataggcacctcattacttatgggtcaacctt<br>tcccaagactgagttcacggagagctttgaccaaactgctcaaatggtatataattatacagtattataaatttatctgctgacatattttccctaccag<br>attataggtgccataa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	693	165	NA	intron:GBE1:NM:000158:1/16	
0	chr5	15906550	15912662	2000169	0	-	L1HS197; RIP_L1_chr5_015_01	TGGAGTAGAATTCAAGCAAACTGAA	AGAGTTTATGATAGGTCCCCATTCT	LINE	L1	L1HS	acgctgggctctgattctaaaggtcaccttatattgacctgggatacatttcgcatgggtagttccctgggcctactacagtctaagttcataatctctt<br>ctttaaagaccccagagcccctttctagggcagggcttttccagtgaatggacccaatattaaatagcacaaagactggcgtttcggtgggtccctgagt<br>gcgggaggcaggacttttatggtggagtaacatgggcctaattctagagtgatcatcttagttttcagaacttgtcatacttcttttttttttaatagaa<br>agctccattttaatgcaaagttaataataatgttttggaaattcagttgtggagtagaattcaagcaaactgaaatacttgtgg<font color="green"><u>AAAATCCTTCTAGGTC<br></u></font><font color="red">GGTGGGGAGGAGCCAAGATGGCCAAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACGGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTTCATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGACCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACGTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACATCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGTACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGA<br>TCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGA<br>TCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATAC<br>ACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGA<br>GTCCAGGACCAGATGGATTCACAGACGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGG<br>AATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATG<br>AACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGA<br>TGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAA<br>AGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAA<br>CCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACA<br>TAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGA<br>CATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTGTCAGGATACAAAATCAATGTACAA<br>AAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAG<br>GAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAATTGGAAGAACATTCC<br>ATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTC<br>TTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCA<br>TCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGA<br>GCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGGGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGC<br>TGGGAAAACTGGCTAGCCGTATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTA<br>AACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGC<br>AACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGG<br>GAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCA<br>AAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGA<br>AATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAA<br>ATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCAT<br>TTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCAC<br>AATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAA<br>AATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCT<br>CACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATA<br>GCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAATCTGCACAATATGCACA<br>TGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAATTTTTTGTGGATCCTGAACAACTAAAAAATAATAATTATGGTAAAATACATGTTACATAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAATCCTTCTAGGTC</u></font>aactatgtaaaatagctctatagaatggggacctatcataaactctgcaaagcacccatatctcaacagcc<br>tataatttctgagtcatgtttctctttagaaagatacttagaagtttatatttataggctgtatttcttaatggcatttaaatcaagtttgaaaaaataa<br>atttaaatgtaactatataacatagcattgaccaatgtgtaaagctcctcaataaaattttgcaatatcattaaaaaaaaatgcctgggtttggaaccag<br>gagggaaggaagtgtacatttgatatgttggcgatgatctttatttagaaccacttttctaggcaatctttgcttttagttcccttttaagcaaattcaa<br>ggcttataactca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6226	97	NA	intron:FBXL7:NM:012304:2/4	
0	chr3	2048592	2050194	2000170	0	+	L1HS213; RIP_L1_chr3_002_01	AATGCCTGATAAAAGTAGACACACC	GTGGGAATATATCTTCTTGGGTTT	LINE	L1	L1HS	acataacaaatatagggaaactgaagaagactaaagacaaaagatgactctgtggtttttggcttgctcaatgtggcagatggtggaaccattcagaaac<br>acaggacaatggaaacagaggagattagggctggtaaggtcagtcttgaatctgctagaatttttttggccttacagacagtcatgtggtaaagtctagt<br>aggcaaatgaatatacagcatggatctgaaagcagaagtctgtgctagagatattggctgtcacatgagtagatgtcaaataaagttgttcatatgcgca<br>aggctgcctaagagatggatttagataaagttaagggctttctggaactacatataatgcctgataaaagtagacacacct<font color="green"><u>GCAAAAGAAACATAGAAGG<br></u></font><font color="red">CCATACTGTCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATG<br>GAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACA<br>GTAACCAAAACAGCATGGTACTGGTATCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGA<br>TCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACT<br>GGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAGTGGGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGAAACATAGAAGG</u></font>ggtcagaatggaaaaagaaaacccaagaagatatattcccacaaaagccaaagcaaaagaccaagagaggattttttta<br>ttctcctatatttgcagctttgaagatcatctctacatgtaataacatcatattagtctggcattcttctcctagcattaaatattaaatttagcacaca<br>ttcttacatatattaccacatgtagacatagagatctttcagaataaacgagtattacagatgttcacattatttatctagagattttagtcattgttat<br>cctctaaactagagatctgcaaatgttttccacaaagggccagagagtaagtattccaggtgttggggaccatgaggtctctgtcacaagtactcaactt<br>tt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1710	89	NA	intergenic	
0	chr3	34694363	34698177	2000171	0	-	L1HS214; RIP_L1_chr3_034_01	TAGCTGAGAAACCATAAGCCTAGAA	ACCTGAATGTCCACTCATTCACT	LINE	L1	L1HS	tttataacatatgtatattctattaaatacattgtgtaaatacaaacattcatgcacattctcttatatgtatttagacagtgctcagagccatacacaa<br>taacttgttgacttttgtaacctctatggattgggattggaatgtttagaatggagaaaaagactgttattatttaacattttaatacttatgggcatgt<br>attactttctaaaagttattttatttataaaagcctgatgcatttaataacataataaggagaaaaatatagctgagaaaccataagcctagaaagatag<br>aatttcagttatcaaagataattaatttttacattttaatgtatattctcatatattgaacaaaatttaaacagatatatcttt<font color="green"><u>AAAAGTTATATGTATA<br></u></font><font color="red">TAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGT<br>TTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCA<br>GTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCG<br>ATGCGGGCTCTTTTTTGGTTCCACATGAACTTTAAAGTAGATTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGT<br>AAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTT<br>GAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGT<br>TCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGC<br>TTATCAGCTTAAGGAGATTTTGGGCTGAGATGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAA<br>TTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTG<br>CCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCAT<br>CAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTT<br>GGCTCTGTTTTTATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTT<br>TTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGT<br>CTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGG<br>TACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCA<br>GAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGCTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTA<br>GTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTAT<br>TTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGTGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGA<br>AGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTT<br>CTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGT<br>GTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGTCATTCAGG<br>AGCAGGTTGTTCAGTTTCCATGTAGTTGAGTGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTA<br>TAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATATTC<br>TGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTCGTT<br>GATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTGAGGACTTGCTTTATGAATC<br>TGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTAACCATTATGTAATGGCCTTCTTTGTCTCTTTT<br>GATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAA<br>ACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTG<br>ACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAAC<br>CTACTCATCTGACAAAGGGCTAATATCCAGAAACTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGAC<br>ATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCA<br>CTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACA<br>CTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCA<br>TTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGA<br>ACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATC<br>CTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAAC<br>TGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACC<br>TAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAG<br>AGTATAATAAAAAAA</font><font color="green"><u>AAAAGTTATATGTATA</u></font>aatttatatatatttatatctacttatatctaagcatatatgtatatatgcttacctatggaacattta<br>taatgtgaatatgatatgatttatatataaattgatcacatttgtgtatacaaattcttatcattgttactgctttatggtctatcctaatttatttaat<br>catcgagtgaatgagtggacattcaggttgttgaaattccctttcaacagatatttagactattccacctctacacaataaaacaatacagagtaatgac<br>agctacaaataagttaaaaatgaaagagaaacctctacaaataagacaaaagtaattaaaaacttagaaagtattaaccaattatcccacatgttactta<br>atttcagttgttaga	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	4159	328	NA	intergenic	
0	chr13	57793456	57794639	2000172	0	-	L1HS228; RIP_L1_chr13_056_01	AATATCCACTACCCAATTCCATAGG	GCTGCAATTTAGCAGGATTTCT	LINE	L1	L1HS	aacagattccgttttctattaattctatgtaattgttatgcgaatgaggaaactacatccttcaaaatgtttgcaaaccaggaaacatcatatgtatatt<br>caagttagaggaaaaagtggaaagaataagggaatttctagaaaaacaaagacgctctgggagtgcagtcatgaattgaatttgccatcctaaacagcag<br>tacttatgactaaaaattgtttaaacatttaaaaacttttagaagatattttaatcgagaaaataatgctgcaatttagcaggatttctgcagattttac<br>tagaattctatttgtgtgatattttctttgccttctgtagaaaaaaaaaaaaaaacaacaactcttccataagaattttaccatt<font color="green"><u>GAAAACTGGCAACTG<br></u></font><font color="red">TTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGC<br>ATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTT<br>GTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGGTCACT<br>CTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACA<br>TGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACATTTAAATCTTTAATCCATCT<br>TGAATTGATTTTTGTATAAGGTGTAAGGAATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAG<br>TGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAA<br>AGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATG<br>TGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATTAAATTGGAAACCATCATTCTCAGTA<br>AACTATCGCAAGAACAAAAAACCAAGCACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACT<br>CTGGGGACTGTGGTGGGGTCGGGGGACGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGC<br>ACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAACTGGCAACTG</u></font>a<br>atactcaaacagagcaaacacaaaccctatggaattgggtagtggatatttggaaggaatgtttcttttagccaagaccaagttttggaaacaaactgac<br>aacactaactgccttttaataaaaatcatttcactgcctcaatatgcgtggcaaacggctgcaagtgtcaggttcagataagctgaaagcaagatggctg<br>aaaggtacattttctaatcaacttcctgaattatctttgactcctggtatggcctcacatgtgacttaattatgaagcataacatgcaatattttcataa<br>caaaaaatgaaaattggtcttttaattctttggaaatggttcatgatgttatccttgccctgttacttcaatgaatttcggata	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1383	184	NA	intergenic	
0	chr13	88851208	88853104	2000173	0	-	L1HS231; RIP_L1_chr13_087_01	GAGTATGAGAGCTCTGCTTTCTGTC	CTTGAAGGACTGGGATACTTGAAA	LINE	L1	L1HS	gcgtgttcattttgtgagtgtgtgtatgtgtgagtgtgtgttgagggagttgtgtgtttgtagtaggaagtaatcaggattcaggggacaaataagtcat<br>ttattaaatactttatttcacattagcgagaacaataaggtatcttctattaacaaaatgaaaagaaccacatttatcttcattaacaaagatccagaaa<br>aatagaagtcatctagttctctaaaagctcagaaaatattccagtttgtatatcttgaagtttatagaattgcccggaaaaacttaactggttcaagaat<br>tgtaatcttaccatacatacctgaaaaaacagacaaaatacatgttttcagatattggacaacggaccttgaaggactgggatactt<font color="green"><u>GAAAGAAAACAAA<br></u></font><font color="red">GCCCACTTGATCATGGTGGATAAGTTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATT<br>GGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTA<br>TTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCAGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGG<br>TAAACTATTGATTATTGCCACAATTTCAGATCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGG<br>AATGTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATAT<br>CCCCTTTATCATTTTTTATTGCGTCTATTTGATTCTTCTCTCTTTTTTTCTCTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAA<br>CCAGCTCCTGGATTCATTAATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTT<br>GAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAA<br>ATTTCCCTCTACACACTGCTTTGAATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCAT<br>TTCGTTATGTACCCAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATT<br>GCACTGTGGTCTGAGAGATAGTTTGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGT<br>GGTGTGGTGCTGAAAAAAATGTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGA<br>CTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAACTGTCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATGCACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTG<br>GGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>GAA<br>AAAAAACAAA</u></font>atggggtaagtcctacaactttcctagattgctgcagaaatcagtctctaagcccgagcaaaggtgtatgaaactagtctagtgatcttg<br>ctgagatgaggagacagacattagggtttagaaaggaaaggttaagatggctattatttatatagcagaatactggagataaagaagctgcataaacaaa<br>aacagatcacgaaaaactggccagggaaaccccctctccagtctttggtagagtaccaatctctgcatgcatgggtaaaatttcaaggccaaagaaagca<br>ccactggcaagcaagtaaacaatttttaccagacagaaagcagagctctcatactccataggatattaagtagaatctacagaacaactgtgtttag	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	2289	379	NA	intergenic	
0	chr11	36573160	36578184	2000174	0	+	L1HS291; RIP_L1_chr11_098_01	CTCCCACTACTTTATGGGAAGGT	AGGACTTCCAATTCCTAGTATGCAG	LINE	L1	L1HS	taataataagaaacatatttttgatggagaatagaaatagatttagttagtagaaatagtacttgttaacttagtgaattcagaggagatattaaagagg<br>aaagcgcagtgtttacattcatatgaactcaagtgttaggtgagccaagaacacagcagaagagccaataaaaggagcaaaaggttcattgacaattgta<br>ttgatcaggcacatttctggctacttcaattgagagcactacccatatattaatatagttataataaaaaacacatacaaatgaactgtggccatttaag<br>gaaaacaacacatggtttggctcccactactttatgggaaggtctggggaggagtttgtgcaatgtaaaaaaaaaaaaatgtatc<font color="green"><u>AAAAATCACAGTGTT<br></u></font><font color="red">GAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCAGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCGATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATAACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGAGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTATGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGTCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTAGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATTAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAAAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGATCAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGTTACTGGTACGAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATTCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATGAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTGTGAGATATCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAAGGGCTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAAAATCACAGTGTT</u></font>tgtgaactcaaaacttctatactgccaatctcttttaaactactatattatctgctga<br>aaagtcataattttcaataaaatgtttaataaatatgtgttgtcccatctatgctgcatactaggaattggaagtccttttagttactggcagatgttac<br>agcccactaccttgtttgcttgcccaggaaactgatgtcagcaagaatgatcaggtctacaaaacagtaagattagactaggtagtaagggcaatgcatg<br>ggttgaattttgtcttacaaggaaaacaatgttgaccttctaacctccctggtcagaatgtgactttatttggagattgggcctttacagaggtaatcaa<br>tgtaaaatgagttgatgagattgggac	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	5658	216	NA	intergenic	
0	chr2	134057491	134060412	2000175	0	+	L1HS337; RIP_L1_chr2_133_01	GGTACAATATGAGGCATCACGTA	GTAGCATCCTTTATAGCTTTGCTGA	LINE	L1	L1HS	ggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacactgtctctactaaaaatacaaaaaaaaattagccgagtgtggcgg<br>aaggcacctgtaatcccagctacacgggaggctgaggcaggagaactgcttgaaccagggaggtggaggttgcagtgagccaagttcctgccattgcact<br>ccagcctgggcaacaagagcaaatctctgtctcagtcaatcaatcaatcaatgactttaggggcttactgagggtgggtgagacaaatgtacttaataaa<br>acaatttcggtacaatatgaggcatcacgtaattaagcaccagcatatttatttcatagaccgctagcaagactaatgaaaaagagag<font color="green"><u>AAGAATCAAATA<br></u></font><font color="red">GACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAG<br>AAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGA<br>AATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCA<br>TTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCTCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACA<br>CAACCAAAAAAGAGAATTTTAGACGAATATCCTTGATGAACACTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAA<br>GCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAA<br>GACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATTAATTAGGTATTGATG<br>GGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCAC<br>AAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGCGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTA<br>GGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCA<br>ACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAAGCATGGGTGAACT<br>CCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAG<br>GAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAACATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACA<br>GATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGC<br>CAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGG<br>TACCAAAACAGAGATATAGATTAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACA<br>AGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATAC<br>AAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTGAGGACATAGGCGTG<br>GGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAG<br>AAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACT<br>CAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAA<br>CACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCCATCATTAAAA<br>AGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGT<br>GTGGCGATTCCTCAGGGATCTAGAACTGGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAA<br>GACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCACAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGAGGGGGGATGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAATAAAAATAAAAAAAATAAATAAATAAATAA<br>ATAAATAAATCTTGAAGCAAGC</font><font color="green"><u>AAGGATCAAATA</u></font>atttgggctctagttttcacattacaattttgccattccaagatgatagtttcttagaatctaaca<br>gtttttagccagacaaggacttagtatatattctgtagtctaactgaaatattttagatcagcaaagctataaaggatgctacctgagcaagcaaataag<br>aacatgaattgaactcacctccagagactcctgtgttgctcctcaagctgagtcagcagatgctcaatgtatttattggagtccatgtattcctgcacaa<br>gcagacaaagacagatgaaaactcactatgacagtccccaccatcctaagaccctgaccttatctctacaaggagtatttttgacaacattatccctact<br>tcccttccggttctaggattct	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	3174	210	NA	intron:NCKAP5:NM:207481:4/18	
0	chr2	142788667	142789107	2000176	0	-	L1HS348;AF417123; RIP_L1_chr2_142_01	GAAATGGGAAGAGGAGTTGACA	CCTATTTTTATCTCAGCTGATGTCG	LINE	L1	L1HS	gtggggcattctccctatgcatgtgtctgtttcttttcctcacattcttttatgaagacaccagacatatgggattaggggcccattctactccactatg<br>acctcatcctaactacttcttcagtaactctagttccaaataagatcagattctgagagactggggattagcatttcaacacataaaatcaggggcacaa<br>ttcaaactgaatcagatgttgaacaatggacgtagagagtttggaaaggcagctgcgggaaatgggaagaggagttgacaatatgtcattttttttttag<br>aaatgacaatatgtcattttttttttagttgacaatatgtcatttttttctcttcaatacattaagagaatcttatcaataaataagt<font color="green"><u>AAAATCACACAT<br></u></font><font color="red">GGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACAT<br>TAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAA<br>AAAAAAAATAAGTATAATCAACCTTTCTCTAAATATATCTGTTTTTACCAGATATATTGAGTTCAGCAATAACATGAGAATCCAAACTATTCCAATGATT<br>TGATTGTTTATCTCTGTCTCTTTCACATGCACATTTATCTCATTACACACACACAAGAAGAAAGAAAGCTATATCATATTATATAATGAGGAAAGTTAAC<br>ACAGAAACATAATAAACAGAAGACTTGTGTGAAGATTTGTA</font><font color="green"><u>AAAATCACACAT</u></font>atgacaaacacttaaaagtatataattcagagtaaaaatatgtaagg<br>gtataagaaataacatgaagaacttgaaagtatgctacaaccttaaaaaatgtctttgacaggtctataagaacaaaattgcgacatcagctgagataaa<br>aataggttgcaacgggactgaggaacatttggatttcaaatatctaataaattgtggctgggaaaagctaaagtacttcagtgacactgcttggtactaa<br>acagttagaacaaccagccccaatttcaaaataactaacataaccaagggctgcccttggcatcaagactgatttctttctaggtcatgagtcccaggca<br>tatcatctctaataaaaatcttacacagacaactttatttt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	NA	60	748	283	NA	intron:LRP1B:NM:018557:1/91	
0	chr2	108632006	108632122	2000177	0	-	L1HS349; RIP_L1_chr2_108_01	GGAGCTGGGAGAATTATTGAAAC	CCACTCTCAACTACTGTCCAACAAG	LINE	L1	L1HS	catgctgataactagttgaatacaagattcaaagtcaaaatgatttcccaaaagctagataaattttgtcacagttttcccagttggaaagacagtttca<br>ggaaagcttgtatgcatcatataatgtactaatagcaagtaaataccatctacatctgggaaactgaggcctacagaggttaagtgacttggctaagacc<br>atgcaactcttgtggccctcaatctgatgctgagctgcttttcaaagccatgtgtgtcttgttctatagtcccactctcaactactgtccaacaagttac<br>gctacaattctccgaaaaagtttcctaataagggcgtaatgaaaaatctagagatataaaagatcttaaaggttatctaaataatatacctaatgct<font color="green"><u>AGA<br></u></font><font color="red">TGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAA<br>AAAAAAAAAAAAAAAGA</font><font color="green"><u>AGA</u></font>cttacaaaaataaaagagatccagagagtttcaataattctcccagctccgtccattttcagaacccaaaagagcgtgat<br>tcctggccccatccttctactgtattctcttcagctccacgtgtggcactgcactatcagaagctgttttcaattacttctttcagtaatacctactgct<br>ctaaattctatcactggacttttagtcttacctggtttatgcttttaactgcctctatatgacaaactgataaatcaacacagcagtttggcttcaaaat<br>acataatgcaatatctcttttaaatagataactatagttttccaaccaaaaataaaggcagaatcaccacatattctctgactttagagaatttaaataa<br>gatacaatgactgtttt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	229	114	NA	intergenic	
0	chr2	83066856	83068234	2000178	0	+	L1HS353; RIP_L1_chr2_082_01	TCCATGATAGAACACACTCTTCC	AATCCCTGTCAAAACCAATCC	LINE	L1	L1HS	ccctgtcaaaaccaatccttgcttaagagtttacttccggccaagagaggtggctctcatgcctgtaatcccagtactttgggaggctgaggcgcacaga<br>tcatgaggtcaggagatagagaccatcctggctaccaccgtaaaacccagtctctactaaaaatacaaaattagccaggcgtggtggcacgcgcctgtag<br>tcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcacaggttgcagtgagccgagatcatgccactgcactccagcctgggcta<br>caacgtgagactctgtctgaaaaaaaaaaaaaaaaaatttacttccattgttaatctgtatttttgacttattttttgagtgt<font color="green"><u>AAGAATATCTTTCTTGT<br></u></font><font color="red">AAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTCTTCACTCT<br>GATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATG<br>AAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTTACGTTTAAATCTTTAATCCATCTTG<br>AATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTCCATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTT<br>TCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGACCTATATCT<br>CTGTTTTGGTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAAC<br>ACATGAAGAAATGCCCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAA<br>GTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTG<br>TGGCAATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAG<br>ACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGACTAAGAAAATGTG<br>GCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAA<br>CTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATACGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATCTTTCTTGT</u></font>ggaa<br>gagtgtgttctatcatggaataatatacaaaagccattggctttctctcctttggtatcttttgcttttagattgttatcttagtgagtcttattgatat<br>gaaaatttaccctttaagcataacagtgggattgtgctattttatccgataaagtatatgatcaactatgcaccctgacatctcagaagagggtaaatta<br>gcattcttctttgagtgtggtgggatggaagaaatctaagggagaagacaaaggttcatagatgtacagatactggtgagatggcagattcacaaaatca<br>acaagtatcacaaaattttaaggtattaggaatagaataaatagatttgtggaggacatgtcggcatcacttcttgggt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	59	1822	426	NA	intergenic	
0	chr3	26439507	26445536	2000179	0	-	238595;L1HS364; RIP_L1_chr3_026_01	CTTAGCCTCTGTCTTTAGGGAAAAC	CATGACCAACGGTGCATAATA	LINE	L1	L1HS	aaaggaaaatagaaaattatccaaaattgaggtgatctgcttaagaaaaatctaattttatttctctacccagtttgtatctcaactgtttctaatatca<br>tcacacctagataatctgactattcttaactttgttaagaatttttttttacttatgtgatccatgtggacacaaaatcttttttttttttttctaaatt<br>ttaagaatcagcactaagtgctaaggcacaggtcacaaattcaagactctacagagaaagcagataatggaaatgggtaaagcagccttggccatagaaa<br>aaccagtctacatgtggcagtaaatagcattggaaccttagcctctgtctttagggaaaacacctccagccaagtgtttctgattctt<font color="green"><u>AAGAAAACAAAC<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCTAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCCGACTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACAAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>TCCTGACCCCCGAGCAGCCTAAATGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGCCCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCAAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCGACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGGAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCTGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCGCATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTACTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCGGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGTTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATTAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAACTGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAACTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGCTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAACAAAC</u></font>aaaaaatgtgattattatgcaccgttggtcatgggcattttttccccaagaccccatt<br>ctgattctgggcttgctttccagtgagttttatgtgcttcaaacaggaaacttgattaacccaaaagacaggcttccctaagcaacagaagtagcctaga<br>ggaggcatttacaccagaaaaaagagacattaaactacctcgttcctcccacaaaaagcacaaactccaataccatagttcaactgtggctgctttacct<br>gaatcaaaaatcctcctcttcaatggggataaaagggtatctcagttatccctagagctttccattagcagatttgttttaaggaataaaaatgtaaaaa<br>atccataccacagtaaaaagataatttaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	6139	97	NA	intergenic	
0	chr4	19170183	19170942	2000180	0	+	L1HS391; RIP_L1_chr4_018_01	GTGGACATCAGAGTATCCCTTTCT	AGAAGGGTACATGACAACTGGTTAG	LINE	L1	L1HS	atcagtaaaggctcgcttctgtattattgtggggtaaattgaattaaattcagaaaaatttcccaagtcccaagcctttatatctttatctttctatccc<br>caattcctaccatggtatctggcccaaattaggagctcaataaatatttttaaatgaataaatgttaggtgatacaaaggatgtcaacatgaataagatt<br>ttgtcttgacactcaacaattttgaaaaatgattatgagggctaattaaaacatatcagaataattccaatgtctgattatatattaaaagttacaaagt<br>agtatgtgagttctgtgattagaagggtacatgacaactggttaggaaagaagaactggaagacttaaagcagaaggcaacatt<font color="green"><u>AGAAAAGAATATCAAC<br></u></font><font color="red">CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAATCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGATCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAATGTAAAAAGAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAGAATATCAAC</u></font>atgtgattgagaaagggatactct<br>gatgtccacacatataattcagatacattgcaatgttttccttcaaggaggggaccatgtctattatatctgcatccttgccacattatacagatattga<br>ataatcctagaggcacgcagtaaatagtaaatagattgtgtagttttgtacgtaacacagactggcttgattgataaaattgatcagctaccatgaaaaa<br>gttgggattacctaattaagctaatttgttgttgtttgttgtatttttgatagttagaagaaatctgcacagaggagaattttgccaattattacttaat<br>attctgatataaattattgagcaattttataaaagttcaaagaatcctcacaaccagcat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	889	113	NA	intergenic	
0	chr4	147539830	147543192	2000181	0	+	L1HS406; RIP_L1_chr4_147_02	GCAAGTTTTACCCATAGTACACAGG	GTATGTAGAAGGCAGGGGTACACT	LINE	L1	L1HS	gtagcatccaaggcaggggatgggacaccagttaccttttacagttttccctccatctctggcaccaaagatgtttactccaccctctctgcagactctg<br>aatcacatgtcaggtatcctggatggccatgcctttttcctccgggagtttttaagaacacagctccacaatgccattgggcttttctgataaatgtctt<br>ctcttgcctctgttcccagatagatgtggtgatgtcatgttctcttggatcatttttatgccgtattgaatgagggatagatatacttgagtgaatggga<br>ccattctttcttctgcttatatgggtctcacctctccttcctgctgttggtggtatgtagaaggcaggggtacactcagcatt<font color="green"><u>GAAAAAGATCACAATCT<br></u></font><font color="red">TTCCCCATTGCTTGTTTTTCTCAAGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATC<br>TCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTT<br>AGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTATTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGA<br>TGGCATTGAATCTGTAAATTACCTTGGGTAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTC<br>CTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCA<br>ATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGA<br>CTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGAC<br>TTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCTGTGGCCAGAACTTCCAACACTATGTTGAATAGGAGTGGTGAGAGAGGG<br>CATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTT<br>TGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCAT<br>GTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCA<br>TGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCT<br>CTTTTTTGGTTGTGTCTCTGCCTGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAG<br>TTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTGGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTGGGTAAACTATTGATT<br>ATTGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTT<br>CTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCAGTGGTGATATCCCCTTTATCATC<br>TTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGAT<br>TCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCT<br>CTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTGGGCATTTAGTGCTATAAATTTCCCTCTACA<br>CACTGCTTTGAATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGCTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACC<br>CAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTG<br>AGAGAGAGTTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAG<br>ATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATG<br>TCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAG<br>TGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAA<br>GAGAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTCATGCAGCCAAAAAACACATGAAGAAATGC<br>TCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACA<br>GGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTTAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAG<br>GGATCTAGAACTAGAAATACCATCTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGT<br>ATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCA<br>TGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACA<br>AAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGG<br>GGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGT<br>AACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAAGATCACAATCT</u></font>aggaaggcattgatcatggc<br>ctaaaatagttcaagagaaaacatggtcagaaaatatgttgttttatctttagtctatacaattctgaaaagtaaatttaatattaccagaaaacagatt<br>ataattcacattttcctgtgtactatgggtaaaacttgcatttgaggtcattatccacaaaacacaataaccatattggaaagcatcaatgggagccagt<br>attcatgggcagcagggtggatgtaaccagcacgaaataaatggtactagagcaccacaggggcaagaaaccctacattgtattaacacgaaccagttca<br>aaaagctactttttctttatggtgggagatatacaatcagccaggaacagcatatttaacaat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	3589	209	NA	intergenic	
0	chr4	29532971	29533968	2000182	0	-	L1HS415; RIP_L1_chr4_029_01	TCAGACCCATATATGAGCATAACC	GCTTAGAAGAATTTTTAGCCAGGTG	LINE	L1	L1HS	taagagtacagtatataattttatctaatcccaaatagagatatgggtaaaaataattataaattttgggatatgatgaactggaagaaggaaaaattta<br>agtttacatgagaaatgtactgatattcctgcataaggtcagacccatatatgagcataacctaaccattaactaaaagagagcatttcaaggatattct<br>tattcattcatacatattaattgaagacctactatgtaatagacacttttgttggcactgtggatatctaacaatcaggataggaaagaatcactacttt<br>caacatgaattatttggcagagagagaggcaaacacataggtatgtatataataagttagatggtaatgagaactaataaaatgaagtag<font color="green"><u>AAAAAAGAGA<br></u></font><font color="red">AATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAA<br>ATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCAT<br>TTGACCCAGCCATCCCTTTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCAC<br>AATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAA<br>AATGATGAGTTCATATTCTTTGTAAGGACACGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCCCAAGAACAAAAAACCAAACACCGCCATATTC<br>TCACTCATAAGTGGGGAATTGACCAATGAGATCACCATGGACACAGGAAAGGGGAATATCACACTTTGGGGACTGTGGTGGGGTCGGGGAAGGGGGAGGG<br>AATAGCACTGGGAGATATACCTAATGCTAGATGACACATTTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGT<br>GCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATTTAAAAAAAAAAAAGAAAAGAAAAAAATTAGGTAGAAGTTTCTGGATCAGGGTGAAATTTT<br>AAATTTAATTTTGAATAAGGGATTCAAAGAAGGCCTCCATGAAAAGACATTTGGGTCATGAGTGGAAGGTGATGAGAAGCAAATCTTATGGATTTCTGGG<br>GGAGAGATATTCTAGAAAGAATGGCAAGTTTCAAAGGCCTTGGAAAGGAAAGTGTCTGACGTGTTCAAAAAATAAGGCTAGTATGGCTAAAATTTTCTGG<br>AC</font><font color="green"><u>AAAAAAGAGA</u></font>ttagaggtagaaaaacccagggtcactcagagatcttaataaatattaaccagttcacctggctaaaaattcttctaagccaactggt<br>aatatatacaccagctccataacaactacttacaaatgaactaagtcttgaagagtagtttttattatttattttgcattacaccattagttcccattat<br>ctaaaaatacttatgttgaaatgcattttgtatgttgcagatgaatctaagttttttccaattagaactacgaatgccaataataaacaaatacacagat<br>agctttctagaaatctttattattgagttttccctcatattttaaaagtttatgtcacttatatattttggatttgagaaagacgacatgagatcacatg<br>ac	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	1360	590	NA	intergenic	
0	chr4	71194625	71200088	2000183	0	+	L1HS423; RIP_L1_chr4_071_01	CTCCCTGTCTTCTGGGTTAAAATA	GGAAGTCCCACTTTTTCAGTAGAG	LINE	L1	L1HS	tcttctaacaacactggaaaaagactcattctagcattaacactaaactgcaatctgctttcatctaattagctaaaccttaaggttgataacacaagga<br>tgtttgatacaattaacgttattattaaaaatactccctctgaaattgagaatataattcttaaaaataatgcagttatccacatcttgattcttgtttc<br>tgggtgaattttgacacatgacaccagctccctgccactgacaaccctccctgtcttctgggttaaaataacagcctgcagaaaaaacattcctaaaaca<br>attttaacctacaaaacttgagactctcactattactcaagtaaattcaagaagaagtaagaaatacaatgaaaaagagaacact<font color="green"><u>AAAGACCCAAACAGG<br></u></font><font color="red">AGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGA<br>GGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGTGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCA<br>GAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAAC<br>TGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTG<br>AGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAAT<br>GTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAG<br>CCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAAT<br>GAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAA<br>ACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTC<br>GAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTC<br>AAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATT<br>TTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCAC<br>CAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCG<br>AGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAA<br>ATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAG<br>AGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACA<br>GACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATG<br>CACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCC<br>ACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGA<br>ACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCA<br>AATGTAAAAGAACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTAC<br>ATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACC<br>ACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACA<br>CCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGA<br>AATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAG<br>AAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCACAGAAATACAAACTACCATCAGAGAATACTACA<br>AACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCT<br>GAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAG<br>AGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTC<br>TGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAA<br>CCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTA<br>ATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAA<br>CTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGA<br>AGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAG<br>AAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATGTAGAAAACCCCATCGTCTCAGCCC<br>AAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAAC<br>AGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAG<br>GAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGG<br>CCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATG<br>GAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACA<br>GTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACACAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGA<br>TCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACT<br>GGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGAGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCATCCTACTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAT<br>GAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGATGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAA<br>TAAAATAAAATAAAAATAAATGAAAAAAAAAAAAACAAAAAACAAAAAAAGAAAAAAAAAAAAA</font><font color="green"><u>AAAGACCCAAACAGG</u></font>ccaataactattagttattat<br>ctctactgaaaaagtgggacttcctgttatgaataagggaactaactgaattccctgctacctaattaccttctgtagctatacttactgacaaaaacac<br>cattaatttttttagataccaattttttttaatactatgaatcttaagggaaaatggcttcacctcaaaaatactctgttacttgcttggaagatagacg<br>actttaagctgatgctgataaacttgtggcttccaaagttttccttactaattctaaacccaaaaggtgcctggcagtctctgctatgtctgtttcaagt<br>aaccctagctctatatcaggagacattttccttataaacagaaacatggtaaatcttaagttcc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	5680	201	NA	promoter:C4orf35:NM:033122	
0	chr5	155488942	155494977	2000184	0	-	L1HS450; RIP_L1_chr5_155_01	GTGAAGACTGTTGGTCAGTTACTTGT	GTCATTGAGATTGGCAGGTAAAAG	LINE	L1	L1HS	catattctcactcataagtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacactctggggactgttgtggggtggggaaaggggg<br>gagggatagctttaggagacatacctgatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacat<br>tgtgcacatgtaccctaaaacttaaaataaaataaaataacataaaataaaataaaataaaaataaaaatataaaattctagggacatcacaggccactg<br>caggtagagaggaaggttgaacagtgaagactgttggtcagttacttgtttcaacaaaatttctaaagaaagaattttgccaatt<font color="green"><u>AAAAAAAAAAAAGTG<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCTCTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGAGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGTCGCACCTGGAAAATAGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCGGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTGTAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCGACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTCTTCTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGATTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCGCAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAACGCCATCCCCATAAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCAATTCCTGAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAACTGAACAATGAGATCACATGCACACAGGAAGGGGAACATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAGTG</u></font>aaaactcctggaattatcaccaaatatcttttacctgccaatctcaatg<br>actgaattattcaaagacatatattaatgtaacttggaggaacactccaacacatgtccccaaactgtcagttcatctatgaaactgtccagacaaccca<br>ttagatatttgttgcctttgggtcttactttttctttacattgagaataaatttctcctgttcctagttttctatttcttcctaattaacaacaattgtg<br>cattgtccttccactaacacctggcatagatcaaatttctactgtgattcctacatttaacacttcccctgaaaagagctttatttccattgaggggtcc<br>aattcattaacattcatgcagtgggtttgtttttaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6179	128	NA	intergenic	
0	chr14	47195664	47196973	2000185	0	-	L1HS512; RIP_L1_chr14_046_01	AAAGAGACAATCCACAGCATAGTTG	GATTTATTCCTTCATGGAGATGTGC	LINE	L1	L1HS	tgttaatattttttaaaaaagaaatcacttatttgtctaacaaggggaattaagttaactttattataatatatgattcattcataaaataaactactat<br>gcagttatcaaataatattattgacaaatatttcatatcatgaggacatcaggaattttataaaatagtaagtatattacgattctctatttctaaagaa<br>tgtatataatcaaatgtatacttggatgtgcatataaagtattgatggatatttatcaaaatgtaaaggatggttctccctgaagtaagatattactgaa<br>gtgttagtgtaacttttattttttctttatattttttcaaattttcagagtaaacatattactgtcaggaagggaaaaatgttttaag<font color="green"><u>AAAGAAAATCTT<br></u></font><font color="red">GACTATGTATCTGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTT<br>CCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCAT<br>TGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATGGGATCTAATTAAACTAAAG<br>AGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATAT<br>CCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGA<br>CATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTT<br>AGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTC<br>AACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTA<br>TAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAGAGACTTGGAACCAACCCAAATGTCCAACAATGATA<br>GACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGG<br>AAACCATCTTTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAG<br>GAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGT<br>GCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAAAATCTT</u></font>aaaatcacaaacatggatacaatatatgtaatacaacattttttctaaatggttattttgaattaattttgcttttag<br>aattttttctcagcacatctccatgaaggaataaatcataaaatgaatgaatatgctaaatcatgagagcagaatcattaattaagaggtagtgtgattt<br>aagagatggaaatggaaaagtggcaccagttatgctttttataaccataaatgataagtaatatatgctttctaagtgtttgatgtttgttttcaaagaa<br>cattggcatggtgtttgaattcaatattcagtcgttcacttttagtgagattatgccctttccagatgccttgtaatttatttcaaaaaagtatagaaca<br>gttaatgttt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	2071	722	NA	intergenic	
0	chr18	72710498	72711330	2000186	0	+	L1HS558; RIP_L1_chr18_070_01	TGCTTTCTTTCTTTCACATAGATCA	GCAGACACGAATCACAGTTTGTAT	LINE	L1	L1HS	agctgcacagttaagaatcctttttttcatgggatgatgtttcttgtcaataagatttaattccctgaggcagagagagttttaattcctttttctttag<br>tttactcagcttagctcagtgaagggcaaagcaaaaacaccaagaaaaattactttttgaattaaatgaatgtcttctttgcctagccccatccttccca<br>ggctgtctgtcagctcttgcctccttcagtgtgggaaggtcccctgtcctatcactacaggcctttgatgggtcaaaatacctgtctgtgttctcctcta<br>atccacttttccatataatgctttctttctttcacatagatcatacttagatcatcacttctatgttgatgtacatatttttttcaattaacgaagg<font color="green"><u>ACA<br></u></font><font color="red">TGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCAC<br>TATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACAC<br>TGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCAT<br>TACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAA<br>CCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCC<br>TTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATT<br>GAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCT<br>AATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGA<br>GTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ACA</u></font>aaggtaaaacttaagtattttgtttgaaagttgtaggtttatttatacaaactgtgattcgtgtctgct<br>ttcccctggcttaaccctttggacatcttttcattgctaccatagccacatggcagaacatatttctgagaaagaaaataatttagagtctactccagga<br>atataggaatattgctcacaaatgtgccagacttttaatttcttatttttgaatcattgtattgaagaataacagtgaactcaaatctcataaagattgc<br>tgatagtgtaaaagagaatgattcttatactttgatgcccacaaaaagaataaatttttatgaatatgagtcactttaggaaatacgtcttgattattct<br>tccattattgaagaaattggcctgatca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	983	128	NA	intron:ZNF407:NM:017757:7/8	
0	chr6	13503064	13503065	2000187	0	+	L1HS2; RIP_L1_chr6_013_01;AC208509;AC217408	ACCAAATATCTGGACACTTTCTGG;NA;NA	GAAGTCAGCAGTGGTTAATTTTACA;NA;NA	LINE	L1	L1HS	caccactgtactccagcctgggcaacagagcaagactctgcctcaaaaaaagaacaacttaaaaaaaaaagatactatatttaagccaatactataccag<br>actaaaagaatataccacagttatatgtgtcaatatgcattggtctcagaaacataacattgattaaaataaaaatgtgattacttttatattgatgtta<br>aaaccaatgcaaacaattctgcattttaatgaatacatatgtgtgtgtgtgcatgtgtgtgtgtatctgtttaaaacaaattggaagaactcataggact<br>gtgtgctaaaactgtatgtaaattaaacttcaatacatggcttaaaaaatagactgggaagtcagcagtggttaattttacatgtc<font color="green"><u>AAATGTAAAAATGA<br></u></font><font color="red">GAGTCGAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCAT<br>CTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCC<br>TCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTG<br>CGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCAC<br>AGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCG<br>AACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCT<br>CTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGT<br>GGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCA<br>GCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGA<br>TAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCA<br>ACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAG<br>GCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGACGGAGCTGAAAACCAA<br>GGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAG<br>TGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTG<br>TACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCA<br>GATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAA<br>ATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAG<br>AGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAAGTAAGCTTCATAAGTGAAGGAGAAATAAAATA<br>CTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTAC<br>CAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAG<br>GATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCC<br>ATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAA<br>AAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGAT<br>CAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTT<br>AGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAAC<br>TCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCA<br>AAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGA<br>ACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAA<br>ATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAA<br>ATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAG<br>AAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGG<br>ATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACGCAATAAAAAATGATAAAGGGGATATCACCACCG<br>ATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCGCTACGCAAATGAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATA<br>CACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAG<br>AGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGG<br>GAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGAT<br>GAACATTGATGCAAAAATCCTCAATAAGATAATGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGG<br>ATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAA<br>AAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAA<br>ACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAAC<br>ATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACG<br>ACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACA<br>AAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTA<br>GGAATCCAACTTACAAGGGATGTGAAGGACCTCATCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTC<br>CATGCTCATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTT<br>CTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGC<br>ATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAG<br>AGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTG<br>CTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTT<br>AAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGG<br>CAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATG<br>GGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATC<br>AAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAG<br>AAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGA<br>AATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAAGGATCTAGAACTAGAAATACCA<br>TTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCA<br>CAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAA<br>AAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTC<br>TCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGAT<br>AGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCAC<br>ATGTACCCTAAAACTTAGAGTATAATTAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATGTAAAAATGA</u></font>ctgggccagaaagtgtccagatatttggtcaaacattattgtg<br>gatgtttgaataatagaataacatttaatgagatgaacatttgaatccatagactgaattcagcagattgccttcaccctggtagaggtggaggttggcc<br>tcatccagtctcttgaaggcctaactagaacaaaaaagccagctctcccctgagtaaaagagaatttctcctccctgactgccttcaaactgggacattg<br>gcttttttcctgcctttggactcaaactgaaacatcacctctttctgggtgtagagcctgccaccttcacattggaactataccatcagctctccttggt<br>ctccagcttgccaactcaccctgcagttcctgggactttccca	Other;OTHER;OTHER	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	60;NA;NA	6131;NA;NA	74;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr17	29659598	29659937	2000188	0	-	L1HS14; RIP_L1_chr17_026_01	AAGTGGATTAACAGTAACATACAGA	CCAAGCTGATAACTGATTATCTCA	LINE	L1	L1HS	aataaacattttaacattaattctttaggataaatgctaaaaagcagaattatgaggccaaaaggtatgaatagtcttaaggtcttgttatccacttcca<br>aatgcctttctagaaaaattgcctctactcacaattccacagaccaccaggaatggatcttaaaaaaaaaatctttgccaagctgataactgattatctc<br>actattctttcaattggcttttattagtgaatttcttaaaatataaatattctttttgagatgggggcctcactatgttgtccaggctggtctcaaactc<br>ctgggcttagcgatcctcctgagcaggtgggattacaggcatgtgccatggtgcctggcttttttctttttttgtacaaatattctttttt<font color="green"><u>AAAAAACAT<br></u></font><font color="red">AAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAACAT</u></font>gatctgtatgttactgttaatccactttttattaatcggtcagcaccctt<br>catgattaaggattttattcattcattcattcatttattcattcatttatttattttgagacagagtctccctctgttgcccaggctggagtgcagtgga<br>gtgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcatgtaccaccgagccc<br>ggctaatttttgtatttttagtagagaggggatttcaccatattggccaggctggtctcgaactccttaccttgtgatccacccacctcagcctcccaaa<br>gtgctgggattacaggcgtgagccaccgcgtctggccgatt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	55	601	251	NA	intron:NF1:NM:001042492:39/58	
0	chr21	26825147	26825398	2000189	0	+	238468;L1HS132;L1HS78;L1HS16; RIP_L1_chr21_025_01	CCCTCACAGAGTGCTTGGTAA	GGGAAGGTAGGAAAACAGATT	LINE	L1	L1HS	ttattaatgagatattttatgttttatgcatgctatgtttctgaaatcttgttagtattttgtgcttatagcacttatcagcttggactggccacatctc<br>aagtgctggataatcacatgtggctagtggccatcatattgggcagtgaaggtctagagcagacaggcaaggtgaagcggaaagaagaacaaaaatgaag<br>acagaccagggtttaaactccaccctgtgactgaagctcagtgaatgctagctataatttctatgctcctaactggagaaccttcctgagccttggtttt<br>ctcatacataaatgagggataatagtacctcccttaaagagctgttataaagattcattggaaagcccctcacagagtgcttggt<font color="green"><u>AAAGTGTAGATGCTC<br></u></font><font color="red">TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTGTAGATGCTC</u></font>aataaatatcaggcacttttcttttcctcttag<br>tcttcatatctgttttcctaccttccctcttcaaggaaaaagtctgcttattttacctttgtttccccagcctggcccactggtaggtgctcagaaagtc<br>gttgtagaattaatgagtggtcttaagttcctatagtggaatatatccaattgctaatttagattttcctttaataaatcatcctttaaaacactttggc<br>aagacttgcaagttgtggagctgttgacattgtagctggtggtccagtggagagatggtccaaggtctagtttggggattggagggaagagcctgttaag<br>ggaaaggaaatgtggcagcatcacaaacaaaacaaaccagatgagatgaacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	56	753	486	NA	intergenic	
0	chr2	53625773	53627999	2000190	0	+	L1HS20; RIP_L1_chr2_053_01	AATGGAAGAGCTCTCAAATTCCTTA	GCAACCATTCAAAAATTTACAACAG	LINE	L1	L1HS	ctaaagggaccgagggacctctatctggtactttattaaaaagtcattaccatttccttgcacaattataagaaaaataaaatgcgaagagttagggaag<br>gtgttaaatagagaatttttataaaacttctcttaaaatctttcaacattttttaatgaagccatttagccattaaaaaaaagtgatataaaaaagttgt<br>atccatggttagagttaagacggttttattaaattcctgttcaagacattttaatggtgatctctataaattcttgatggacaccatcaatgagaaactg<br>ttcttactgttcttactagtaggtgatttaaaataaataaataaataaataaaacatttttatgcaaccattcaaaaatttacaacagtt<font color="green"><u>GAAATTATAT<br></u></font><font color="red">CTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAAT<br>CCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTAT<br>ATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGG<br>CTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGG<br>GGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGT<br>GTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAA<br>GCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTG<br>AGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTT<br>GACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGA<br>GGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTA<br>TTTTGAAATACGTCCCATCAATACCTAATTTAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACC<br>TAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAAT<br>TAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAA<br>GGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCT<br>CAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCT<br>CACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGT<br>AAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACC<br>CAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCC<br>AACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGG<br>ATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCAC<br>ATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACA<br>CATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAA<br>AAAAAAGAAAGAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAATTATAT</u></font>ttaaggaatttgagagctcttccattgacaaatataactattcaattttttgtaataacatga<br>agacattttaaatccaattgaaattttcatatcaagtatttcaaaataatgaggaagccttgatttttagaatacatatattttagaacaaaaccctata<br>gctagcctggacataagtaaaacggcccatccatggatggacagaagtatctgatatttgacaagaaagagcttcttgattcccatctgggggtgcagtc<br>acaaggaacctccatctagcctgccagccccaccaccatcccactggcatcaccttaacctacacccttggctggtgctcttaagacacctagaacatga<br>gatcattcagtagtgcccagacttctt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	2302	62	NA	intergenic	
0	chr7	145063229	145063384	2000191	0	+	L1HS32; RIP_L1_chr7_144_01	TCTCTAATCCAGCCTTTCAATTC	TGTTTCTTTTCCTGTGTGTTTCC	LINE	L1	L1HS	ttattatcatttcaggcctagttttaatcacaaatacttgaggacaaattttgtatctagaagtgtagcttttcctttgttcttcatttccagaattgtc<br>ttggctacatttagattcttgttattacacaggatcttttgaattcatttttctaaatacatgaaaagtactattgagattttcctttaattcattaaca<br>ggtaaaatttttatcatgcttttgagtattcccattcactaacttattatatttcatcatttattcatgttcctttaatgtccttcaatacaattttgta<br>tttctttcatatagcccttgcacatttgttgctgctgtcattgaaattatttcctgtttcttttcctgtgtgtttccagttagagtaagtgtt<font color="green"><u>AAGATAC<br></u></font><font color="red">GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA</font><font color="green"><u>AAGATAC</u></font>attcctaagtgagatttgcaggaaggaattaaagtat<br>cagcctttttgtaacatacacctgttgcattttacctgctacctcacataatggggcatttgcctgtcctgcaaatgcgccacttaccctggatcttttt<br>gcagcattttcgccacctgatccagaggtgcattcagttccgtcctgatggacaccggcttcttctgcaaagaagcttctattttcctggctttgaattg<br>aaaggctggattagagatttcaaagttagtttctatatctaaaaattaataatgattttatcttaatactctcatgtaaaatattactcatttataatta<br>cataatttattatgcagttaatgtggccactaaagtaaatattataaatgatctaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	57	463	280	NA	intergenic	
0	chr5	8749529	8749530	2000192	0	+	L1HS34; RIP_L1_chr5_008_01	ATGTCTGTCTTGACATTCCTAAGC	AATATGTAGAATGGCACAGGCTTC	LINE	L1	L1HS	tatataaaaattcatcatgacaactttataaaatgcatctcgactaaacagctaacattctgaattctgctttatgcagtgtgtttgggtcatacataga<br>ggccatgaaaacactgagcttggcttaaatacactggtttctcttatctacgtcaccatcagtttaaagtaaaatttggaagaaaaaatatattgaagaa<br>taatataagtaggcactcaaacaatgtgccacacacttccatcttaaaacaaagttaatatgtagaatggcacaggcttcagacattttcatattatctg<br>gtaacacttttctttaactacagcatttaaaatatataggcaggttaatataagaaatatcattccaaagagtaaattttctcttt<font color="green"><u>AAAATTTTTTAATG<br></u></font><font color="red">TGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGT<br>GAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAG<br>CATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGA<br>TTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGA<br>TTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATC<br>ATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACA<br>CTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGT<br>GGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAG<br>GCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTT<br>GCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAAT<br>GTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGG<br>ATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTG<br>GACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCGATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAG<br>AGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAGTTTTAAATTTAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTTTTAATG</u></font>aatccat<br>ttcaaaaattttaaatcaattatctttttcattacataaactcaggcatgtatgaacatattttttagtggaagtagtcaaataattttgatttgaagcc<br>ttttaaggcttaggaatgtcaagacagacatcaaatatttaacagatccatgatgcaaaagcaatttcagaggcttttgaaatagacttttggccttatg<br>ctgaatcatcccatactgaggtgctctttgagttattacatttgcccttcatgtttgtgtttttcacctgctattcgctggtatttcttgacaccacatg<br>cgttcctccctagaggattcttttcagtgttgtgtggtgcctgccctggtttgagcaggtgcatagccaaactcaacat	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	2177	284	NA	intergenic	
0	chr7	107829264	107829265	2000193	0	+	L1HS43;1104685588367; RIP_L1_chr7_107_01	TTTATTGCACCTCCTGGTAAAGTAG;TAGAAGACTGGGCCTGGATG 	AGAGCACCATTAAACAACACAAGAT;TACCGCAGGAAGACAATTCC	LINE	L1	L1HS	tgcagatataatgaaattatgcttaataatgtattattaattttatcttatttatatcctcatctaaaatataagctccataaccacagagatttttgac<br>tattttgttttagaacaatgtctggcacacagtaggcactcaaaaatatctgttgaatgaatgagtaaatgaatgaaagagtagaaatgccttgaaatct<br>aatggtattattttaatataggaaaaaagagtctccaagccatctaaccagctaactctggctaatgtacccaatgagctagaagactgggcctggatga<br>atttgtgttctgatcaaggacattgaacactcaagtagggaaaagagcaccattaaacaacacaagatagaggaggggcttttgt<font color="green"><u>TAAATTTTAGTGGAA<br></u></font><font color="red">TAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCAAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTAGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>TTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACATCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACACAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCCGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCGAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAAGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACTGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTAGGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATACATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAGGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAACACCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGACATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAATTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAATACTTAGAGTATAATAAAAAAAATAAAAATAAAATAAATAAATAAATAAA</font><font color="green"><u>TAAATTTTAGTGGAA</u></font>atattctactttaccaggaggtgcaataaatc<br>aacacacctatcatttcagaatcatcttaggtagtcatcagaaaggaattgtcttcctgcggtatatgcctgaaggtaataatgtatttcaggcatgtga<br>cctgattgtgtctgcctcttaagtatctctttggttttacaattcaacttcgaagcttacctatagtctaattttattatgctcttctagtatccttatg<br>acattgtccttccttatcttatttcctaggccctaggcttatgtcaccaacgtgagaagctcacattgttgaatgggcaactttgtagcagggactaatg<br>gaaagaaagagacctaggttggaagttaaggtagaacctgttatctacgccca	Other;Venter	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	58;55	6157;6284	89;217	NA;NA	intron:NRCAM:NM:005010:18/28	
0	chrX	143406983	143409955	2000194	0	+	L1HS70;AL049588;AF417125; RIP_L1_chrX_143_01	GTTCATTTGAGTGAGGGTACTGTCT	TAAGTCCCAAAAATTGCATCC	LINE	L1	L1HS	gagttctctagtcaatagctttttttttttcctttttcctttttcctttttcttctttttttttttttttttttttttttagcagagagtacagttcttc<br>ttagaaaattattagatcagattagggagatttcaaaatatttatcaccttttaatttctttaaagaaattctaatcagactgaatatcaccaagatcat<br>aggcaagaaggctttgaattaatatgttctacttgcacaggaaaatatatcagttcatttgagtgagggtactgtctcagaccccatgctctattgggca<br>atccacccttattgacagagttgccagatttggcaagtaaacatacaggatgcccagaaacatttaaatttcagataaacaacaaataag<font color="green"><u>AAGAAAAAAA<br></u></font><font color="red">GAGACAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCT<br>CTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGA<br>CCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACA<br>AGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACC<br>AAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATC<br>CAGCAGCACATCAAAAAGCTTATCCAACATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGC<br>ATATAAACAGAGCCAAAGACAAAAACCACATGATATTCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAA<br>TAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGACAATATCATACTGAATGGGCAAAAACTGGAAGCATTC<br>CCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAA<br>TAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCT<br>CCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGC<br>CAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACT<br>ACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACT<br>GCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAA<br>AAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACCACAAGGCTACAGTAACCA<br>AAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGA<br>CAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCC<br>TTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCA<br>TTCAGGACATAGGCGTGGGCAAGGACTTCACGTCCAAAACACCAAAAGCAATGGCAACCAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAG<br>CTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCC<br>AGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACA<br>TTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAG<br>AATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAA<br>CCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATA<br>AATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGA<br>CTGGATTGAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAA<br>ACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGA<br>AGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGC<br>AGCACACCAGCATGGCACATGTATACATATGTAACTAACATGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAATCATTTATTA<br>AAACAAAGTTTTTATATTTTTATAATAGTGTTTCACTTGATAAATATTTTTGAATAAATGAATGAGGAAATTA</font><font color="green"><u>AAGAAAAAAA</u></font>aaaaagaagatatgcac<br>tatttggatgcaatttttgggacttaatatgtggtatacacttttattttaaaatatttatttacttgaaattcaactttaacttggtgtcctatatttt<br>atctggcaattctattgctataagatggggcatctgttaaagaattgtatcttagctcatgagaggctgccaagccacctgaattattccttacatcact<br>cccctgaggcacacaatccttattcaccatgggctctacaataagcagtttattcaatacacatctacataaactgatagatcacttactaagtactggg<br>cactggggtcacacggtaaataaggcccactccccaccctggagaagctcactatccagggaaggaggtaaac	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	59	3174	175	NA	intergenic	
0	chr6	32377901	32378653	2000195	0	+	L1HS153; RIP_L1_chr6_032_02	CCAATTCACTTTGTCTCCTAGAAAT	AGTTCACGAAGTTGAAAGCTTATGT	LINE	L1	L1HS	ttgtcaagatatatgatctaatatgcaaatgtatcatcaaattctcaaaaacccatgtttaatttaatttaattttctggataaagtttaagtgttaaat<br>tgtaataataagtggtagcttatgtttaggcattagatgatgaacaattctgaatttcaaggcctatcctgcactgctaaaactcatatcaaagaaaatt<br>gcaaattactacgtatcatgggtcattagaacttttttcagtaaaagcctcaaatgttgctcctcaaaatgccaagcagccatagtaactgactggtaag<br>aataaattaacttagttcaggaagttgaaagcttatgtatcttagttcacgaagttgaaagcttatgtatctatgtagacatt<font color="green"><u>AAAAACAGCTATAGTTT<br></u></font><font color="red">GTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTT<br>GCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGG<br>TGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCT<br>TTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAAG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATTAAAAAAAA</font><font color="green"><u>AAAAACAGCTATAGTTT</u></font>atcatatgttaaaacaatacatttttatagaga<br>aagctaaaataagatttctaggagacaaagtgaattgggtttttgtgtgtgtgtgtgtgaccttggacatctttctttacttttttgagcctgtattttc<br>tctgctgtgtggtggagacaatcatcctaatgttttccaagctgtgtcatgaccatgtgacataagaagacgtcaaggctcagggacacatgccccacat<br>catccatgacaaatgaaaatgtgatcctggttttcttgtttttaatttcgtgcttcttcctcactcagcctgcttcacaagaacactgtgagggtcaaat<br>gggctacaatcgcactttgaagactgcgcagtgggatataaatgtaagtg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	931	169	NA	intergenic	
0	chr9	12556850	12559646	2000196	0	-	L1HS163; RIP_L1_chr9_012_01	GGGACAGGGGTTAAGATTTTATTTT	AGTTCTCAACTGTAAAGGCAGTGTC	LINE	L1	L1HS	tacatgctctttcagagcaactgtaaaaagagaaagtagcaggaggcaaagttcctttcctggagtacaaaatggtaatgcacataatcatgcccttccc<br>acttatgttactctatgggatattcagagactggggagctgcagcacctgccaacccttctgcctctgggttctagcctgaactgtgtggtacataaggc<br>cattgcatcaaccccttactcatcagtgttctccacattttcactcagaacatcaattggcataaatagcctgaggactctgaagaactctcttcctttt<br>gggcacttggagactgagttcattaacttctccccaggggaaagggcagttctcaactgtaaaggcagtgtctaattcgaggtt<font color="green"><u>GAAAAGTATTGTATTG<br></u></font><font color="red">ACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAG<br>GGCATCCCTGTCTTGTGCCGGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTAT<br>TTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATC<br>ATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGAT<br>CATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATT<br>CTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGTATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAAT<br>AGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGA<br>TTATTGCCACAATTTCAGAGCCTGTTATTGGTCGATTCAGAGATTCAACTTCTTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAAC<br>CCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACA<br>CCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGT<br>GAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATC<br>AATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTA<br>CTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACT<br>ATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACAT<br>ATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATAT<br>GTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCT<br>AGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAA<br>CGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACT<br>CATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAA<br>CAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATG<br>AGATATCATCTCACACCAGTTAGAATGGCAGTCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTT<br>GGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACT<br>GGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAA<br>CCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTG<br>TAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAAC<br>AATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATG<br>CTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTAT<br>AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAATTATAAATAAAACAAAGAAGAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAA<br>AAGTATTGTATTG</u></font>taaactaaaaataaaatcttaacccctgtcccgcccgctaccacgtgctgtacagaccccaaagggcccccagaaaaaaaaacttaa<br>aactaagttccttgcggccaaagggaccccacaaaaaaacaaaactgagttggtgacaggatgggaggtcagatatgctttgttatatccccccctttca<br>tggtttacccacaactgaccagcattaatgttaacatagagatcataagaccaacagaacagactctttgttgcaataagatgcccaattacaaacaaga<br>cctaaggccatgccaggcaagggtctggcatgggtacaattaaagaataaactatgctgtaactgtgctacaaagcttttctttttctctaggctaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	2898	85	NA	intergenic	
0	chr6	70720240	70726289	2000197	0	+	L1HS169; RIP_L1_chr6_070_01	TATTGAGGTGTAACCAGCATACAAT	CCACACGAAAGATATATGAATTGC	LINE	L1	L1HS	ataggtaatagaaataaatgtaaaaaccaaaactgtaaattttttagaagaaaatacagaataaatactttgtgactttaggttaggcataggtttttaa<br>ctatgacactaaaaagtcaatcaatgaaagaaatagttaaaaatatttcttctttgaaagacactgccaggagaataaaaagacaaagcacaccatggga<br>gaaatattttcaaattacatatatgataaaatgacttttatccagaatatataaatagctctaaacaaacaatccaatttttaaaatgagtatgattgta<br>atagcactccacacgaaagatatatgaattgcaaataaactcatgaaaagttgttcaacatgattagtcattagg<font color="green"><u>AAAATCAAAACAAAACAAAGCAAAC<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGAGAGTTGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCGGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATAGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACACCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCAAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTATGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCACAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACAAAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAACACATGAAAAAAA</font><font color="green"><u>AAAAACAAAACAAAACAAAGCAAAC</u></font>atggaaatgtttgttattttaattg<br>ttatgatggtttcatggctgtttgcatgtgtcaaaactcatcaaatttgtgtacgttaaatatgtgaaacttattgtatgctggttacacctcaataaag<br>ctgttaaatttttttaaatttaaaaatattatttcaagaataaaataaccaaaccatattctgggagcaagtatttgcaaattatatatctgataaatga<br>cttgtatcaataatacataaagaacttttacaactcacaaataagaaggcaaactaaaaatggaaaaaagatttaaatagatgattcttcaaagaagata<br>tgtgaatgtctaacaagcagaggaaatgatcattaatcattaagaaaatg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6289	214	NA	intron:COL19A1:NM:001858:11/51	
0	chr9	10136524	10137713	2000198	0	+	L1HS172; RIP_L1_chr9_010_01	CTAAGATCAGTCACAGGCTTAATGA	CAGGTGCAAGTGGTTTAATTTTC	LINE	L1	L1HS	caaaaaggacagagcaagacattacataacaataaaatattcaattcaacaagaacacctaattatcctaaatacatatgcaatgcaacattggcactca<br>gattcataaaacaagtacttcttggactgcagtaagatttagacagctgcacaagaatagtgggggacttcaacgttccactaacagtgctagatagatc<br>atcaaggcagaaaactaacagaaattttggacttaaactcgacacttgacgaattgttcctaatagatatttacagaatactcaacctaacaaccgcaaa<br>gtacacagtcttttaatctgcactcagaacatactctaagatcagtcacaggcttaatgataaagcaagtctaaataaattcc<font color="green"><u>AAAAAATAGAAATTATA<br></u></font><font color="red">CCAAACAAACTTTTCAGACCAAAGTATGATAAAAATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATT<br>CAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCT<br>TCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAG<br>AATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATT<br>TATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAA<br>TGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACC<br>ATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGACATCCCATTACTGGGTATATACCCAAATGAGTATAAA<br>TCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACT<br>GGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAAC<br>CATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAG<br>GGGAATATCACACTCTGGGGACTGTGGTGGCGTCGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAG<br>CGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAGA<br>AATCATA</u></font>accaagaatatctcaaactgcacaactacatgaaaattaaaccacttgcacctgaatggctttttggtaaacaacaaaattaagggagaaatt<br>gtaaaactctttgaaattaataaaaacagaaacacaacatatcaaaatctatgtgatgcagctaaagcaggattaagaggaaatgtatagtgctaaacac<br>ctacatcaagaacttagaaatataccaaattaataatctaacatcacacctagaggaattagaaaatcaagaccaaactaatcccaaagctagcagaaga<br>aaagaaacaacaaaaatcagagaagcactgaagaaaattgatatgcaaaaattcatagaaaagaccaacaaattcaaaagtgtatttcaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1326	111	NA	intron:PTPRD:NM:002839:3/46	
0	chr7	134350008	134350422	2000199	0	+	L1HS180; RIP_L1_chr7_133_01	GGAGTGTAGAATACTGGGGAAAATC	CTTATTTCCCAATGAGCCCTGTA	LINE	L1	L1HS	aggatttcatttatatgaaatacccagaataggcaaatctttagaaacagaaggtagagtggttgttgcctagagggtagggaggatggaagattttgca<br>agtgatttgctgatgggtacagagtttcttgttggggtgataaaaatattctaaaattgattgtagtgagggttgcacaactctgaatatgctaagagcc<br>attgagttgtacactttgtgtgggtgaattgtatgtgaattatatctcattaaagctggaaaaataatcaatggaattgaaaggttaaaggatttgtcat<br>tggcctagaaaacagtggggggtggcaaacatacggaagtgataacaaaactgaaatgcatggctgtggagtgtagaatactggggaaaatc<font color="green"><u>AAAGTGCA<br></u></font><font color="red">CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAAACAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAATAAAATAAAATAAAAATTAATGAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTGCA</u></font>gctttgaccactggggcagaagtggacttacagggctcattgggaaataagcaggcattggtcttcaggcagcttcc<br>agtccttcatctaaagggctttttattttattttattttttatttttatttttttaagttggaagtatgaaactgaatgaccttttcttttcttttagag<br>attaatgacattttcttttcttttcttttcttttcttttttagacaaagtctcgctgtgttgcccaggctggaatgcagtggttcgatcttggcccactg<br>caaccttcgcctcctgagttcaagcgattctcatgcctcagccttctgagtagctaggattataggtgtgtaccaccacacctggctaatttttgtaatt<br>ttttagtagagatgg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	507	84	NA	intron:BPGM:NM:199186:3/4	
0	chr6	32676587	32677015	2000200	0	-	L1HS242; RIP_L1_chr6_032_03	AGTTCACGGTCTCTATCTCTCCTTT	AACCTGTCTTTGACTGTTGAGC	LINE	L1	L1HS	agtcccaagtacagattatataagtcatacccttagataacattatttgaggcctatgtatgccataaaataggtctaagtgttttatatgtattacatc<br>atgggtcctctcaacaacctactttgtggttactaaaggattacattgcatgtaaatataaaatactatattaatgaaatcttagttaatctacaaagtt<br>ccacaaaataaaaacagcctaaattgtaatgttgtcaataatcataatttatgagcttgagcacggagtaaatttagattgtgtttttactaccaccaaa<br>tgatgcacatccatttacctagttcacggtctctatctctcctttctcatttatgttaatccaaatagtgatacacacagtgttatgcagc<font color="green"><u>CATAAAAAA<br></u></font><font color="red">TGATGAGTTCATATCCTTTGTAGGGACCTGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGTGTATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTGTAATTAAAAAAAAATAAAAAAAATAAAAAAAAAAAAACAACCTAAAAAAAAAAATTACCTTCAGGCGCTATATGTATAAAG<br>TGTATATAAAACATAAATG</font><font color="green"><u>CATAAAAAA</u></font>aaaaagagttaaagaaagaggaaagaaacacaaaaagtggctcaacagtcaaagacaggtttattttggaga<br>ataaacctgagagggcttctggctgatttcagtcaggagccctctctcttacagactaagagtatttaagggtttggggcgaaaggcttgaatgtttctg<br>tgtggagaagaagtttattgtggggttggaatgtctctggttggaggggaggttatcttgggtttggcatctctccggtcagaggggaggttatcttggg<br>gctggtatgtctctggttggagaggggtttatctcagggttggaatgtttctggtcagaggtatcatttgtggtttaaggtcatgctgccattagccatt<br>aggctgatgccctttgggt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	576	150	NA	intergenic	
0	chr1	101978990	101978991	2000201	0	-	L1HS308;database26; RIP_L1_chr1_101_01	CCTACTAGGCCCTCTTCTTTTGTAT	GTCTTGTTGTGCCAGACACTTTA	LINE	L1	L1HS	gtcatgagtgagactcatttgaatactatcagtttctacaatttaatttcctctcctacagggttgtaaactagtctggacagagaaacgcaaaggtaca<br>caccctataaagtcccattatccctaaagggaatctcatttaaacactcctctaaaaggacaatcatctcttttgccaatttctaaatctttgaatattt<br>tcttcacaaatctaacgtgaattatgtaatcattccttttcctgtataatggatctatagaaaatgaatgttttaattggcctactaggccctcttcttt<br>tgtatcaagatggtaataaaactttgtcatattctcataaattgtctgaaacattttcttttacagatttgttaaatttcaaactgtttaa<font color="green"><u>GAAAATCTA<br></u></font><font color="red">TTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGT<br>GCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCC<br>CGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGT<br>TCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTG<br>TTATTGGTCGATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATT<br>TGCATAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTC<br>TTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTT<br>TTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAA<br>TTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGTGTCCCAG<br>AGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGTCATTCAGGAGCAGGT<br>TGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGGACCTCTTCAAGGAGAACTA<br>CAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTG<br>CCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAA<br>AAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAA<br>AACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGAC<br>AAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCTTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCT<br>TCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCAT<br>TCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGC<br>TTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCA<br>GAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACAT<br>TTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGA<br>ATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAAC<br>CATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAA<br>ATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCTCAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGAC<br>TGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAA<br>CCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAA<br>GGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCA<br>GCGCACCAGCATGGCAGATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA<br>AAGAGAGACAGAGAGATCACTTGGGTATTCGGCATATTCGATTCCCTCTAAAAGGTTCTGTATCATATTTATTCACTGAGCAAAGTCACCCTGTCAGTTT<br>CAGAATTTGAGGTCAAAGTCATTTTGAGAAATAAAGGCAGATTGTCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAATCTA</u></font>acatgacagctttt<br>aattttacattgaaatatctaactgatattttaatctaaaaggtatgaaagaaattaagtttgtgagcataacataaattttaggaaaaccctatttata<br>tttataagtttgatttgtcagatttacaaaatttgcttaaatgtttagaaagattatttcttaaagctttaattaaaagcacttttacatagtaatgtaa<br>atgttcttaatgaattatacactgaaaaatgtttaaaatggtacactttatgttatgtatattttatgataatagagaaagcacatttacttgtttttta<br>aagtgtctggcacaacaagacatttaaaatgtttcaatatagtataaaaaatttaagggaatttcaagtaactaaat	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	62	3441	455	NA	intergenic	
0	chr1	83125977	83127569	2000202	0	+	L1HS320; RIP_L1_chr1_082_01	GGGATTCAAATGGGAAACAAG	CTCCTTTCCAGTATCTGCTCTTATG	LINE	L1	L1HS	ttgtatagaaaaaaactatataatctaaaaggaataaatgcttcaagaattctaaggaaaagatatttcaaaaatcaacatttattttttcagtggtata<br>tcctggttttattttcttaagagaattacaattatattattatgttggtacaaaagtaatggcggtttttgccattacttttgcaccaacctaatattaa<br>tactactttgtttagcaaagatggaatttacttgctaatgatcttttatcaggtcactcttcacacagtagcatttattgttttgaccctgggaaatagg<br>tgagcttgtattctgtgaagcctctgacctttctcctttccagtatctgctcttatgtttttcaaggctattatcatctttt<font color="green"><u>AAAAAAAATGGTTCATGC<br></u></font><font color="red">ACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGT<br>AACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATC<br>TTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGG<br>ATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCAT<br>TACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTA<br>AAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAA<br>TATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGA<br>AGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAGATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGA<br>GTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTG<br>GGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAATAA<br>AATAAAAAAAAAAAAATAAAAAAAAAAGAATTGTAAAAAAAAAAATTATAAATAAAACAAAGAAGAATATGTGAGAGGAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAA<br>ATGGTTCATGC</u></font>taaggagctaataaaaaaaaaaaatttctctctccacaaaaaagaagacaacttgtttcccatttgaatcccagttctgccacttgtta<br>agtatatgatcttggtcaagttatataacctgttggtttctgtgtgtgtgtgtttttttttttctcatttgtaaagtgaggacaataggagagttgtggg<br>gtgtttagagaattaaacgactattgtattagagggaaggggagaaagggacagaaagtgaagaaaagaagggagagaggaacaagtcaggaaggaaaac<br>cagatcagctgatgaagacaactcagcacaaaaggcagacgtgataatattggaatttctggctttaataagaagctactagtatagaggacc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1748	140	NA	intergenic	
0	chr2	126509514	126510636	2000203	0	+	L1HS335; RIP_L1_chr2_126_01	CATGCATCTCTGAACTACTGACTTG	ATAAAAACCTGTTTAGGCCAAGG	LINE	L1	L1HS	ttcttgtaatacaaaagaaaataaacaaaaatatttaagcagatctgtctatctatctatacatcaatccatccatatatatatctgcttaaatatttct<br>gtttatatgtatatctatcacctatctacctatctatatacatatatatgaagagagagagagaaagacagagatacttctcagatatttatttatttgt<br>catctgttgtctcttactgactggcatccattttcaaaatggacctccacaaaagtcaaaattcagtacattggccttgcaaaatattgtgatacaaagc<br>cagtcctcaaggaatggggcataactgcccactgggaggcacagggcttcaccatgcatctctgaactactgacttgggtcagcctcatg<font color="green"><u>AAATATAAAA<br></u></font><font color="red">GGAAATCTTTCAGTTGGTTTAGCCCCCAGGAAGAGAGCTTCAATGCCAAAAAGCTTCTCCTTCTGTGCCTGCTTTGAGTTTCCTCTTTCCAGTGAGTCTA<br>AGAGGCTGGGGAGTGGAGTTTGGGTGATACTTCCCGGGACCTGCGATAAGTCCCTCCCTTGATCTGGGTCTCCACTTCCTCATCTTTAGTAGACTTATAA<br>GAAATGGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTA<br>TAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGT<br>TTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATGTCTCTGTTTTGGTACCA<br>GTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACACATGC<br>ACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAT<br>ACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGGGGGGATA<br>AAATAATCTCTAAAATTTCCTTC</font><font color="green"><u>AAATATAAAA</u></font>ttttataattaaaaaagtctactatgctgcccatgcggaaatgttatttgttgcctgaaaccaatcg<br>tgttgccttggcctaaacaggtttttatttccaggaatatcctcaccatgacaaccatcgatttaaatggggctgatgggctgtttttttaaagcccagt<br>gattttaggacttcaaaaattaggtgataagctaaagtaaacatcgaccactgcctttgttctttaggacccctggtattgtagtagtgtttgtaaaagt<br>ctgcttgatgtctttaaaaaaaattcaatccctttttcttctagcactactgatatttttctccaactagagaaaaataactttatatccaaagttacat<br>catgagaatgccatctttgctgg	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	1276	395	NA	intergenic	
0	chr3	41818077	41821493	2000204	0	+	L1HS375; RIP_L1_chr3_041_01	TGTGGTACAGTCACACTACAAAG	GATAGCATACACCATCATGCACT	LINE	L1	L1HS	agtttctaattcaagcatcttttcccaagtttactgaccattccaatttcttcttctataaagtaattcttcacattctatgcccattttgtcttaactt<br>ttccttttcattattaggctatttttcatatcctggatactaatcattaagaaaagtttccctacaacaagatcacaaagacagttatgtaaattttctt<br>ttaagtttttttcaagttttccttttcatattttagtcttatgtcagaaaaaaaatctaacactcaaatgtcaacaaaaaaactaattgaataaaaatgt<br>ggtacagtcacactacaaagtactaatttcaaaaaagatgaacatttctataaacagatacaaaatgatctctgaggtaagttt<font color="green"><u>AAAAAGGTACAAAATG<br></u></font><font color="red">AAATACGTCCCATCAATACCTAATTTATTGAAAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGT<br>GGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATG<br>GTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCT<br>TTTTTGGTTGTGTCTCTGCCAGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTT<br>TCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTAT<br>TGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCT<br>TCTAGATTTTCTAGTTTATTTGCGTAGAGGGGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATTGGTGGTGATATCCCCTTTATCATTTT<br>TTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGTGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTC<br>ATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCT<br>TGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCCTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACA<br>CTGCTTTGAATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCA<br>GTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAG<br>AGATAGTTTGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTACATGGTCAATTTAAACCCACAGCCAATATCATACTGAAT<br>GGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGG<br>CAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCC<br>CACTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCGCAAGCATTCTTATACACC<br>AACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGA<br>AGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAA<br>TATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACT<br>TTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTAT<br>ACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATAT<br>CTACAACTATCTGATTTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGT<br>AGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAG<br>AAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATG<br>GGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCA<br>TCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCACAAAGTGGGCGAAGGACATGAACA<br>GACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAG<br>ATATCATCTCACACCAGTTAGAATGGCAATCATTCAAAAGTCAGGATACACAGGTGCTGGAGAGGATGTGGAGAGATAGGGACACTTTTACACTGTTGGT<br>GGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGG<br>TATATACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCC<br>AAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAG<br>GGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGTGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGTACAAAATG</u></font>ggccagatgccgtggctcacatctgcaatttccaacactttggaaacactttgggaggctgaggcagg<br>tggatcacctgagcccaagagctcgatagcagcctgggcagcatggcgaaacccagtctctaccgaaaatacaaaaaaaaagccgagtgtggtggcacac<br>acctgtggtcccagccaccctggaaggtggaaagacagcttgagcccaggaggcagcggtttcagtgagccaagatcacaccactgtactccagcctcgg<br>agaaagagaccccaccctgggtcaaaaattaaataaagtgcatgatggtgtatgctatcttttatcttttatattaaaatataaaaatttatattaaaaa<br>tataaaagatgttatc	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	3862	430	NA	intron:ULK4:NM:017886:21/37	
0	chr3	105306008	105311028	2000205	0	-	L1HS378; RIP_L1_chr3_106_02	CTCCCCTTTTTGCCTTACTTCT	CTTACTTGCAATAGCCCATTCAC	LINE	L1	L1HS	tttttcttttttttctgagacagagtctcgctctgtctcccaggctggagtccagtggcatgatcttggctcactgcaagctccgcctcccgggttgaca<br>ccattctcctgcctcagcctccccagtagctgggaccacaggcgcccgccaccacgcccggctaattttttgtatttttagtagagacggggtttcaccg<br>tgttagccaggatggtctcgatctcctgagctcgtgatccgcccacttcggcctcctaaagttctgggattacaggcttgagccaccgcgcccagccatg<br>aaccagatatttctaagtataggtgcatggaggtcattagaaaataaaataacgatcacaactttattcagctgaattttagtctt<font color="green"><u>AAAGAGAAGTATTT<br></u></font><font color="red">TTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGA<br>TAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTT<br>GGTTGTGTCTCTGCCCGGCTTTGGTGTCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGA<br>AGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCA<br>CAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAG<br>ATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATT<br>GTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATGCTTTCAAAAAACCAGCTCCTGGATTCATTGA<br>TTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGTTCTTGCTT<br>TTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTGGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCT<br>TTGAATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGT<br>CATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGACA<br>GTTTGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAAT<br>GTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCT<br>GTCTCATTGATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTT<br>TATGAATCTGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTG<br>TCTCTTTTGATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTTGCTTGGTAGATCTTCCTCC<br>ATCCTTTTATTTTGAGCCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCT<br>GTGTCTTTTAATTGCAGAATTTAGTCCATTTATATTTAAAGTTAATATTGTTATGTGTGAATTTGATCCTGTCATTATGATGTTAGCTGGTGATTTTGCT<br>CATTAGTTGATGCAGTTTCTTCCTAGTCTCGATGGTCTTTACATTTTGGCATGATTTTGCAGCGGCTGGTACCGGTTGTTCCTTTCCATGTTTAGCGCTT<br>CCTTCAGGAGCTCTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAGCGTTTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAG<br>TTTGGCTGGATATGAAATTCTGGGTTGAAAATTCTTTTCTTTAAGAATGTTGAATATTGGCCCCCACTCTCTTCTGGCTTGTAGGGTTTCTGCCGAGAGA<br>TCCGCTGTTAGTCTGATGGGCTTTCCTTTGAGGGTAACCCGACCTTTCTCTCTGGCTGCCCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGA<br>CAATTATGTGTCTTGGAGTTGCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAA<br>GTTCTCCTGGATAATATCCTGCAGAGTGTTTTCCAACTTGGTTCCATTCTCCACATCACTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACA<br>TAGTCCCATATTTCTTGGAGGCTTTGCTCATTTCTTTTTATTCTTTTTTCTCTAAACTTCCCTTCTCGCTTCATTTCATTCATTTCATCTTCCATTGCTG<br>ATACCCTTTCTTCCAGTTGATCGCATCGGCTCCTGAAGCTTCTGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGAT<br>GCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAATCTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCT<br>ATGACAAACCCATAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCT<br>ATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTT<br>GCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCA<br>ATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAA<br>ATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGA<br>ACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAAT<br>GACTTTCTTCACAGAATTGGAAACAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCT<br>GGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACA<br>GAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAA<br>ATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGTATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTA<br>AACATTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAG<br>CAATGGCAACAAAAGTCAAAATTGACAAATGGGTTCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTAC<br>AACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAAC<br>CCCATCAAAAAGTGGGCGAAAGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCA<br>TCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAGCAGGTGCTGGAGAGGATG<br>TGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAA<br>ATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCAC<br>TATTCACAATAGCAAAGACTTGGAACCAAGCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGC<br>CATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGC<br>ATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGG<br>AGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAAT<br>GTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAATGGCTTACATGAATTTCTCCTTTTTATCTTTAA<br>AAGCTTCCCCCTTTCCCCAACCCCTTTGGATGTGTCTATGGTTCACCATAGCATGCATATGTCCCAGATTGCAATCCCTTGCTATTCCTGAATAAACTAC<br>TTTTTGGGAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAAGTATTT</u></font>ggataattacagggaaaaacaaaggcattttaggtgaatgggctattgcaagtaagtcaacaacg<br>ttgaaataaaaaatattttttcatactgtggaatacagactcttcagaaagtacttttctgagcttcacattccttatttacatgaatagattgtgtgtg<br>tgtttataggtgtgcattacactttaaaatctaaatacaggctgagcacggtggctcacgcccgtaatcccagcactttgggaggctgaggcaggtggat<br>tacctgaggtcaggagttcgagaccagcctggccaacatgtgaaaccctgtttctattaaaaatacaaagaaacaaacaaaaaaattagcccggtgcggg<br>tgtcctggtgcatgcctgtaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	5569	646	NA	intergenic	
0	chr4	21161003	21167097	2000206	0	+	L1HS410; RIP_L1_chr4_020_01;AC226616;AC212263	GCTAAGCAATGGAGGAAAATATCG;NA;NA	TGTACATGGTGTGAGGTATGAA;NA;NA	LINE	L1	L1HS	tataatagcttcataaattgataacttagtaaagttatcaattttccccaaattgatttacagagtcaataaaatccaaaccaaactcacagcgggcatt<br>gtttatttggtagaaatcaacaagctgatttgaaattaatgtggaaatccaatgaatctagactagccagggaaattttaaaagaaaagaaagaacaaag<br>ttggaggaataacagtgccagaattcaagactgattataaagctacaattattaatatagtgtgtgtcattggtgtaataaaagacaagttaatcaatgg<br>aatagaaatggacccatgaatatgtagaatattgatttttaataatgctataggctaagcaatggaggaaaatatcgtattttt<font color="green"><u>AGAAAATTATACTAAA<br></u></font><font color="red">GATATGTTTGAGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTC<br>CATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATT<br>GCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATA<br>TTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAG<br>CACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGC<br>TCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAA<br>CCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCCGGAGATCTGAGAACGGGCAGACTGCCTCCTCA<br>AGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCT<br>GCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGT<br>AGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCA<br>GCAACAGAACAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCA<br>AAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAAC<br>CAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATG<br>AAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTG<br>GTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGT<br>TCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAA<br>AAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAA<br>GAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAA<br>ATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGG<br>TACCAGCCGCTGCAAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGA<br>CAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGA<br>CCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAA<br>CAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGG<br>GATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGA<br>CTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTG<br>AACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATT<br>CCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACT<br>AGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCA<br>GAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCAC<br>TAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAG<br>CAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAA<br>AGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCA<br>CCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACAC<br>ATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAA<br>AAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAG<br>AGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTT<br>GATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCT<br>GGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAG<br>AAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAACTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGA<br>CAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTC<br>AACATAGTTTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAG<br>ACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGT<br>ACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATAC<br>CTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACA<br>TTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGAC<br>TTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCTCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGA<br>GGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAA<br>CAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATG<br>GTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAAC<br>GTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAA<br>TGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAC<br>ATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCC<br>ATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCA<br>GAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGG<br>AGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATA<br>CCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAATCATATGTTTGAAAGCATCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAA<br>ATTATACTAAA</u></font>aattaggtattcaaatgaaaattatttaattcatacctcacaccatgtacaaaaattaactcaaaatgcatcatagatctaaatataaa<br>atgatacaacttctagaaaacaaggaaaaaaatcttagtactcttggattaggcaaaggttttctagatatgagaccaaaaacataatccataaaaaaat<br>taagtgggactccattaaatttgaaaattctggtcttttaaagacactgacaggaaaatatagttatatagctaatatgggggagggagtggtatggatt<br>gaatgtttgtgtcctctctaaaattcatgttaaaactaaatttccaatgcagcagcattaagaggtgcggcctttaagagatgacttggccatgc	UCSC;UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	57;NA;NA	6211;NA;NA	100;NA;NA	NA;NA;NA	intron:KCNIP4:NM:001035003:1/8;intron:KCNIP4:NM:001035003:1/8;intron:KCNIP4:NM:001035003:1/8	
0	chr4	79269135	79275195	2000207	0	+	L1HS413; RIP_L1_chr4_079_01;AC208184	TCATGAGCATCACTCTTACCATGT;NA	ACTCAGCTGACTTGCCATAAATGT;NA	LINE	L1	L1HS	tgttcctgtgtgcctctgtgctgttacatgctcttcccttctaacaagggtgtcctcaactggcaccatctgcaaacatcaaataagcactcaagttcaa<br>gttcctcttattcactttggataaaatattctctgatccttctttgacacctgttgcatttgggatgtgtatgtgtgtgtgtgtatgtgtgtgcgtgtgt<br>gtgtgtgttttttttttttttttttggtcatcccttcctaagcatcttgagagaaggattgaagtctgattcaatcctatattaccttccacagtgcctc<br>atactcagctgacttgccataaatgttaattgaagtgaactgttttcttttgtggagctaaactgagtaaaacataaattggatac<font color="green"><u>AAAGCTTCAAGATA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGACCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCATCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAACACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGGAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAGTCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTAGTCAGGAAACCCATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACAGAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGTAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCTCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAACAAAAAAATTAAAAAAAAAATAAAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGCTTCAAGATA</u></font>catggtaagagtgatgctcatgac<br>gtgttgttggcagtgcaagctggcaccaaaacctagagctttgcttttacatttgacactgccactcgccacctccccttaccctccccacttcaagctg<br>tttcctcggctcctacggcagccttcccaacacattggtgagtttgtctacactgggtagaaatcactgccctataacatgaaggtcattctgttgtcgt<br>gttttatttggttagttttttaagagtaaaacaatagccacagacactgaagaaagaagtctcatttggttggttggttttgttttgttttgtagctttt<br>gtactaattcaaagcctctaaagagaatacatgatttgtaacagcttacgggtgggctgagc	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6199;NA	127;NA	NA;NA	intron:FRAS1:NM:025074:20/74;intron:FRAS1:NM:025074:20/74	
0	chr5	96866424	96866425	2000208	0	+	L1HS437; RIP_L1_chr5_096_01	ATCTATCATTTATCTGCCCCGTCT	ACAAGGATTAGCAGGAAGTCTGTT	LINE	L1	L1HS	ttttttatcaacaaaatttacacacatagaaaaatttagaaaataaagaaaataaaagctactgatgctattgatgatacaaatgcacatacatttatgt<br>gaattctgtaatctatgtataacatgtatgtgatcacattatctttattattttgtgatatgctttttgatacttagcaatatagtgtggatatctatca<br>tttatctgccccgtctttcaaatgtatatacaagcattatttttaataaatacatagtggtattctataattgatttaatctatcatatactattgactt<br>tcatattgcttccaaattttacttttacatgtaattatgcaattagtctatacaaatattttgccattttttactgatttttt<font color="green"><u>AAAAAATACATTTTTAG<br></u></font><font color="red">CTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGG<br>GTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTT<br>CCTATTTCTCCGCATCCTCTCCGGCACCTGTTGTTTCCTGACTTTTGAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTT<br>GCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCA<br>CTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCAAAAATT<br>TTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTGAGTTTAATTAGATCCCATTTGTCAATTTTGTCTT<br>TTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTT<br>AGGTCTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTT<br>TCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTG<br>AGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAG<br>TGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGGC<br>ATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGT<br>TCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTA<br>TTTTGTTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACA<br>TTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTG<br>CAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAA<br>TAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCA<br>TAGATAGCTCTTATTATTTTGAGATATGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTG<br>CATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGG<br>GATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAG<br>GATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTT<br>TTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGC<br>ACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAGAATGTGGCACATAT<br>ACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTATAACTTAGAGTATAATAAAAAAAAAAAAAAGAAAGAAAAAAAA</font><font color="green"><u>AAAAAATACATTTTTAG</u></font>aa<br>tccataaattcataccaattaacagacttcctgctaatccttgttgcatataatagtaatgggtaattcccttaatcatattcaatttactaggcagatg<br>atatctttaatgtttatttttattaatattgatatttaaaatttttatttttaatatagtttgatttaatatctttgattttattatagttattacatat<br>ttgtatattaatatttcttttgtaaatggcctaatttttaatttctcacttgtatacaaggagataattcacatttttattatttataattgttattttg<br>ttgactgcatgatatcatatatatttagcatgatgaatataaaagagactttttctgttgcatctatattttggctacagc	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	2954	256	NA	intergenic	
0	chr5	151476244	151476363	2000209	0	+	L1HS447;L1HS448; RIP_L1_chr5_151_02	GTACATCTCTTTGGACACTTCCACT	GTTTAAGTCCAACATCCTGTTCTG	LINE	L1	L1HS	actaaaagaggcttagtttgggagagggagaaaatgacatcaatccaagctggaggagcaagcaaggactagatcatgagttggatattcattttgttta<br>agtccaacatcctgttctgttgctccttttgtcaattagagcatgaagaagccacagattaattctcaaactttcatatacatcggtctctcccagggag<br>cttataaaagtgcaatacttgctcagagcttctgacacagtagccataataagcacaggttctttctgttggaagtcatagaaattcaactaaaatcaac<br>ttaagcaaagccaaaacagaagtaatggcttctctattttggaatcaaagaggtggtgttagcttcaggcatgactccatctagcagtt<font color="green"><u>AAAATAATATC<br></u></font><font color="red">CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAAATAATATCA</u></font>attaaagctccctctctcttttctaaaaagttgttcttctaatttatttattggcttcatccttagga<br>atgctttctccacatggtagtaaaaataggcatcagaactccaggcttgtattatcctcataggtagtgatcccagaggaaagggtgctatgttctcttt<br>ttcatttccacgttaacccctctaatggatttggattggccctgctcgggtcaaattcccacagtggaagtgtccaaagagatgtacatcatctctttgg<br>acactctctttagtttgctgcctaagcagagaaagcagggtcacttgagtgatagaatcaccagattcacttggcttggggaaaggatagtttccataaa<br>gaagaaatgttcaaacaggaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	59	691	560	NA	intergenic	
0	chr4	88483901	88486312	2000210	0	+	L1HS480;238204; RIP_L1_chr4_088_02	AGAGGTAACCACTACCTTGCAACT	GCCTCATGACAGGAGAAGAGATAAA	LINE	L1	L1HS	aggttgtggatcagtagattagtttatagtttgctggtgggagtgttcaaccactttagcaaggaatttggcattatctcttaaagctggagactcatat<br>atctatgatgagtaattctacactgggcatatactcaaaagaaattattgcaggtgtacattaggagacatctacaagaatgtccatggaagcatttctg<br>tttgaaatagcaaaagctttgaaaaaaacttacatgcctcatgacaggagaagagataaattgtggtaccttcatacaataaaatatcttactggaaaga<br>aaatgaatataaacgatgctagaaatataatttgaataaaaattaagctctcaaaaggttacatgtactacaaaacacatttt<font color="green"><u>AAAAAGTTACAAACAAC<br></u></font><font color="red">ATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTA<br>TTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAA<br>TATTTTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTC<br>CCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAA<br>TAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCT<br>CCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGC<br>CAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACT<br>ACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACT<br>GCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAA<br>AAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCA<br>AAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGA<br>CAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCC<br>TTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCA<br>TTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAG<br>CTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCC<br>AGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACA<br>TTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAG<br>AATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAA<br>CCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATA<br>AATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGA<br>CTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAA<br>ACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGA<br>AGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTG<br>CAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAGAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTACAAACAAC</u></font>taaaactacccaatatgctttttaagaaatatttatattatggtaaaactgtagttctaaaaagcaaaggg<br>aagactaatacaagttgcaaggtagtggttacctctggcggagggaggcagggtatgagatagggaagataacattggaggatgttacaaattatgaatg<br>tttccattgtcatgcagggtggtgtatacacaggtatttattgcataacaaacaaattgttcaacaaacaaataggtaaataaataaataaataaaaaga<br>aggccatgcctgaaccaaggatgagaccatgtcatgaaccaagttttatgattaattaaattttaggcatccagcattagaaacacaactactggatttt<br>tgattgggcaga	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	2701	272	NA	intergenic	
0	chr13	86340147	86340148	2000211	0	-	L1HS513; RIP_L1_chr13_085_01	CCAAACTTGAGCCTCCTGTAATC	CCTTGAAATAAGCAGGAAGAAGC	LINE	L1	L1HS	atgttactttcttctctagccctgataaaaatataaaaggactgattcctatataatattaatttatagtgcatactatccctttatatgaaaagaatgt<br>gaattaaaagtaatatttaaagaaagaaggttattgtgaataaactaaaaacaaaaaggcatatactattttgaatgtggtaagattcaatattttgttt<br>ccttacaatcacgagatcaaagaagctaagctccttgctgggaacttccctgtatatgctaaggaaactcttggtaacttttggtatagaataatcttga<br>aagccccagggctattattattctaaattgagagaaaataaaaatatggcatatattgagtgggccccaaacttgagcctcctgtaatccttgacacg<font color="green"><u>AA<br></u></font><font color="red">TGTGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTCGAAGTCAGTGTGGCGATTCCTC<br>AGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACAC<br>GTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACAC<br>CATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAA<br>CAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGT<br>GGAGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATAT<br>GTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATTAAAAAAAAAAAAAA</font><font color="green"><u>AA</u></font>gcttcttgatacacagctaggtcg<br>ttagttattatttattgaattcactgaaccaaggtttaggattactagccaggcttcttcctgcttatttcaaggatatgcctgtaccaaattgttaaat<br>cctcattccaatcccaaacttatacatatcccagaaatcttattaccatcttatacagtatgtgccttttaaaggcttggtattaggttagagcacctta<br>actctcatttctcttttgcttttaagtttataatgatagaaaatttcctcaactacttcattctacaaatctaattggtaaaatgaagtgtttaaggcac<br>tgaatcaaatttttctttttcatatgttttccttttactgcgaagtcatacctgtagaatgaagactgggcctt	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	809	142	NA	intergenic	
0	chr16	18832545	18838376	2000212	0	-	L1HS526; RIP_L1_chr16_018_01	ACCCTCCAAGGTAACTGAATCTTA	ATGCCCATGCTTGTTAGCTACTAC	LINE	L1	L1HS	tatatttatacctatatatatatattttggagacagagtctcgctttgttgcccaggttggagtgcagtggcactatctcacctcactgcaacctctgcc<br>tctcgggttcaagcgattctcctgcctcagcctctgaagtagctgggactacaggcacgcaccaccatgtccagctaatttttgtatttttatagagacg<br>gggtttcaccatgctggccaggctggtctcaaactcctgacctcaggtgatctgcccaccttggcctcccaaaacactgggattgcaggcttgagccacc<br>gcacccggcctatattttttatttcttaccctccaaggtaactgaatcttatagtaacaggtatattttgaaccaggagt<font color="green"><u>AGAAACATACTAAATATCTC<br></u></font><font color="red">CGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTACGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAG<br>ACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCT<br>GGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCC<br>TGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGA<br>GAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGG<br>AGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACC<br>AGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAA<br>CTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCT<br>GAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAA<br>TGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGA<br>GCCGATGCAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAA<br>TGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAA<br>AACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCT<br>CGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCT<br>CAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAAT<br>TTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATGGACAAGCAAATGCTGAGAGATTTTGTCACCA<br>CCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATC<br>GAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATA<br>AATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCA<br>GAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAAC<br>AGACTTCAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTAT<br>GCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCC<br>CACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAG<br>AACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGC<br>AAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTA<br>CATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACAC<br>CACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGAC<br>ACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGG<br>AAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAA<br>GAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTAC<br>AAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTC<br>TGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCA<br>GAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATT<br>CTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAA<br>ACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGT<br>AATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAA<br>ACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGG<br>AAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGA<br>GAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCATCTCAGCG<br>CAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAA<br>CAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAA<br>GGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATG<br>GCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATAT<br>GGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTAC<br>AGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTG<br>ATCTTTGACAAACCTGAGAAAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAAC<br>TGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGG<br>CATTACCATTCAGGACATAGGTGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAACCAAAATTGACAAATGGGATCTAATTAAA<br>CTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGC<br>TAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAA<br>AGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACA<br>CCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAAC<br>TAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAA<br>GGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACA<br>ATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGA<br>AATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGG<br>ACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGCGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTA<br>GTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAA<br>AAGAAAAAAAAAAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAACATACTAAATATCTC</u></font>aggtttttaatgaatttgataattactgtgccttaatacattaaggaa<br>attttgatgattagaaaaactttgaatactgaatttgttttgtgaaatgtatataagtagttctattttgtttattagtagtagctaacaagcatgggca<br>tttcttatgttgtatagataatggaattttgtgatgcctaaggcagcagaatatttttctgaactattatagtgactggatattgaaagctatgtacata<br>atccttctacttatttttttacataagagaaacttgccttaatgaaagttatgtgtatctttatattgtctgtcctttatacttcatgtactcagtagta<br>actgacatttttgtttttgtaaattaatagca	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	6076	223	NA	intron:SMG1:NM:015092:55/63	
0	chr12	62295046	62295217	2000213	0	-	L1HS5;238698; RIP_L1_chr12_060_01	TCAACTACAAAGTTGAAGAATAGG	GTTTCCATCAACAAGATCATGTCAAG	LINE	L1	L1HS	gtatatctatttgtattgtaataaccagtaactggcatggtatacaatcaaaaattgcctcccgatgttgtgtgagacagataattaatgtaacaaacct<br>gtgtggagccaaatgtttgattagtgtggtgccttcaattcaactcctatagtacttcttctgatcttacctgaaaaaaataatttttacaggccaagta<br>ctaatgctttcttcaaatggcttctggagaaaataagtttttgttccagatattgtttatgttgtgtgtctttttttttgttatagaagtaccatatatt<br>tgtttcatcagagttggaaagtaacaatataatttatagaatgtttttcaactacaaagttgaagaataggattaaaattattgtt<font color="green"><u>AAAAAGTGAAATTG<br></u></font><font color="red">GTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTA<br>ACTAACCTGCACAATATGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTGAAATTG</u></font>aagagttaaaactt<br>ggaaagcaaattaagtttgacattagaataattattcttagaaaatatacaaaacactattgggaaaagattattagtcaagtgaacatatgtacaaata<br>catttcctaaagattgttataaagacatatatttggtaaagttcatggaaaagtgtctagcttcttaaaagagattccaacatacctgtaataaagtaga<br>ccaaaacaggtaatcacagacacagctcaaaactccacatggattggccaatttaatgaaaaaaacttgacatgatcttgttgatggaaacaaagaaatg<br>ataatactgtctgcttacttgaaaaattattcactgttcagaaattaatagataccaatgaaagtcataggt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	58	546	376	NA	intron:FAM19A2:NM:178539:1/5	
0	chr2	160149127	160151648	2000214	0	-	L1HS21;237829; RIP_L1_chr2_159_01	GTGTTGGCATATTTCTATTCG	TAAAGGCTGAACTTTGCATTG	LINE	L1	L1HS	aggtcaggagtttgagaccagcctggacagcatggtgaaaccttgtctctataaaaaaaaatacaaaaatcagccaggcatggtggcgtgcgcttgtagt<br>cccagctactcaggagactgaggtgggaggatggcttgagtccaggaggtcgaggctgcagtgagctgtgatcacgccattgcactctagcatggacaac<br>agagtgagaccctgcttcagaaaaaataaaatgcaaataaaatgaaaagaaagtaaccaaattatatttccctatagtagttttcaaattttggacaaat<br>aactataactaacaagtttgagtttaatccattttaagcaaagagatattgtgttggcatatttctattcgtaattcactgaagtgataag<font color="green"><u>GAAATTCTA<br></u></font><font color="red">TAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGAATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCTGCCATTGCCCAGGCTTCCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAGCAAAAAGGCAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTACCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTACTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCTATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGGCCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCAGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAGCCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAATTCTA</u></font>aacaatgcaaagttcagcctttaattactacacttctatctctctggcagttatctagctgcaaaagca<br>ggtacctcaaaacttagtggtttaaaataacaatctgcaacttggacggggcttgacaggaaggctcatctctgcttcacatgacatcagctttggtgtc<br>tccaccgagagttggcgacccctctccaagaggggtcactcacaggcactggttattggctgggagctcagcctggattgagagataggaacttcattcc<br>tctccatgtgggtctcttcatgtagcccaggcttcctcactgcacggtggctggctgctgagggaaagtgactcaaggaccgtattgcctcttaagaccc<br>aggcttggaagttatacagtgt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	57	2606	84	NA	intergenic	
0	chr4	58087351	58087734	2000215	0	-	8419;L1HS57; RIP_L1_chr4_057_01	CAGCAAGACTCTGTCTCTAAAATGAT	GGACTTGAATTTGGTCTTGTTTCTA	LINE	L1	L1HS	ataagtcaggtatagtggtgcatgcctgtactcccagctacttgggaggcagtagtgggaggatcccttgagcccaggagttggatgctgcagtgagtta<br>tgatcacgccactgcactccagcctggattgcagtcaaagaaggtcaggcacatctagccacctattaagatctgtttgaggaagttagtttgaaaactg<br>gtctagaccacagccaatcacctcacctccaaccttccctccaccagctcccatagcagggttaacagagcaaatctgtgcttgtcaaagtcagactata<br>attttcttatttcagtttctccatgagcaaaatggggaagataatgccagcaagactctgtctctaaaatgataatgacagctgct<font color="green"><u>AAAGAACATTTACT<br></u></font><font color="red">CACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAAC<br>TATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTG<br>GGGACTGAGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACA<br>TGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACATTTACT</u></font>at<br>gtatcagacactgtactaagcgctgtgcatgtataatctcatgtagtctttgcaacaaacccttgagataggtgttatttccatttttcaactaaattac<br>agaatgtgatagaaacaagaccaaattcaagtccaacagcatagcccatgctattaacgaccatgccttcttacctcctgtgattgctctgcagggcaga<br>atgactacgtaaagcctgactgaaactagtcatacaggaacaggaaacccagagtaagggtctgcctcaggcctcagcaaaggacatttagttacaggga<br>agaccagaagtatcaggttataacccagcttcacagacagctttctgtaggtgttgacacacatcctttcctctcttcctggtc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	59	589	195	NA	intergenic	
0	chr22	18711526	18712024	2000216	0	+	L1HS85; RIP_L1_chr22_017_01	TTTGTATGCCTTGTGTTTTGTATTG	AGGAGAGTCTCATCTCCAGAGTTAC	LINE	L1	L1HS	cgtccttatttctgttcctctgacttgatcatttcaagtgtcccatcttcaaattcactgaatctttcttctgttgctcaaatctgcttttgaatccctc<br>tggtgaacttttatttcaatcactacacttttagttccagaatttatttattttttttctttttaggttttctatctctttattgatattcccattttgt<br>ttacacataattttactgactttctccacatcttccttcagttctttgaccatctttaagaaagttgttttaaagtatttgtgtagtaggttaccatctg<br>gtctttctctggaacagtttctgttgttgtttttcctttgaaataccatattttcttgttttttgtatgccttgtgttttgtatt<font color="green"><u>GAAAACTGGACACTT<br></u></font><font color="red">AAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAG<br>ACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGTCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGA<br>AACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGG<br>AAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTG<br>CAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAACTGGACACTT</u></font>gaatataataatgcagtaactctggagatgagactctcctcttcctcagggtttgctgttttggggttttgttatgttttacattg<br>ttgtaggttgtctccatgctgaggatcaacctgagttgtaagcttgaggtcttctcaggtctgaagctgctcctttccctgggcacacactcctctctcc<br>aaggatgtgtggtaactttaatttcctctgtgtatgccattgcttttgagtgtcctagtctttaatgtttggctcccaaaaaaggaaaagagaacaacga<br>aggggaagggaaatggggttctggccttttctatctcctagaagttgcttcagtctggtaagggcttgcagcagtggagtggggagttgtgagcaataa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	58	593	79	NA	intergenic	
0	chr5	57680002	57686095	2000217	0	+	L1HS220; RIP_L1_chr5_057_01;AC226350	ATTGGCCTTCAGAAGTGATTAAGAC;NA	TAGATAGCCAGACAAACAAACCTTG;NA	LINE	L1	L1HS	tttaaccactatgcaatgctatcacttatatgataatcaataattaggcaagtatgcatgcaatttgtatacatacaagacagagacaaaaaaggttgtt<br>acgtttttcttaccgactcttgttcaaaaatgaataaatccctgctggcttctttaataaagattgagtaaatatatttagttatcttaaattattaatc<br>tataaatcagctcatactcagatatatgaaatacattctgcttttacctcattgtaaagattatgcctactgtttgcctttaaaacttaatttaaaaaat<br>gtaactttaaaagatgccttctattattggccttcagaagtgattaagacccagccaatgcagaaagagaacaaaacaaacacat<font color="green"><u>AAAAACAAAAAACAC<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAAGAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGTGATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACTGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAAGAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAACCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCTTAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTGAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAATAAAGAAAATGTGGTATAAATACACAATCAAATACTAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAA<br>AAAAAACAC</u></font>cagaacagaataaagtaaatgaaagctaacaaattcaaggtttgtttgtctggctatctattttaaacctcaagtggagacttaaccaaat<br>gtgggtttatttttctcacataagaagatgttcagaagtaggtagtcccaggcctttacagaggtttggaatgtcactaggcacgtcttatcttcccatg<br>ctgtcatcctcagtgtggggctttcatcttcatgctcacaagatggctgttgcactcctaggcatcacatacacattccaggcagaaaacaaaaaaaggg<br>caaaaggcaaagggaaagatgcccaatgcatttgtccctctcaaaacacccccagaccaccagaagatttctgtttacgacaaattaatcagaa	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6244;NA	135;NA	NA;NA	intergenic;intergenic	
0	chr6	66260040	66262021	2000218	0	-	L1HS226;54985;AF417134; RIP_L1_chr6_066_02	CCCTAAGCCTGTCAGAAGTTAGTATC	GCCATGAAAGATAAGGAGATAAGAG	LINE	L1	L1HS	ttggtagtttgtgcaatatttgaaaaaaaaattgcagtttaaagtaaaattatttaaaataatttgaatcatcaagccaatttcattttcatgttaagta<br>taatgattacaagatttttaaaaataaactcctgttaaaatgtcttgaacaacttgagagaacaatgtttatttcttagttagtggattcttacttctaa<br>taaagatggatcacttttgcttagggtcactgaaaaagttccaaataaatgtaaaagcaatctttaaagacaacataaagctagcaaagtagtcgagata<br>acaagtttgagatgccatgaaagataaggagataagaggtaagtctggaatctgaatccattttgccttgaggtttctccctgatcag<font color="green"><u>AAAGATATAGTA<br></u></font><font color="red">TCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGT<br>CTGTTCATGACCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAG<br>ATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATC<br>CCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCT<br>TCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTC<br>TACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTA<br>GATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAG<br>TATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTA<br>AAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGAT<br>ATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCC<br>TTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGTCATCTCACACCAGTTAGAA<br>TGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACC<br>ATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAA<br>TCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACT<br>GGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAAC<br>CATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAG<br>GGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAG<br>CGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATAAATAAAAAA<br>CAACTCTCAGAAGCAAAAAAAAAAAAAAAAAGCAATCTTGCAGATATCTGACCAGTCTAAGCTGTTCAAAGATATGTTGCATGGAGAAAATAGAATAGTA<br>GAAACCTAGACAAAGACTGGGAAATAAAGATGGTCTTATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATATAGTA</u></font>gagtca<br>gatactaacttctgacaggcttaggggaaaaacaggttcagctacaaaagggctcagtgaaaaataatggatgggagtggacaaaaagcatctgtctagt<br>catttggggaattcactgtaccactggtccagggaggatggttgccaccttgcccctccctgagacatttctggccaactccagagcccaatgctccctg<br>cattccagaccaggacatctgtatggtggaacatcgatctccctgactaatgtaatctgtaactgttctggccaatgggcggcagccattgaaccagatc<br>aggaaggacaaggataggcagacagggttgactgggagaagctgtcagaaaaattcttcctgaggagaaagtcaggttggaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	NA	60	2114	120	NA	intergenic	
0	chr12	43977461	43979549	2000219	0	+	L1HS293; RIP_L1_chr12_042_01	TTACAATGGATACGTTAGACAGCTC	CCATAATTGGTTAGGATGATGAGAC	LINE	L1	L1HS	atccaacatttattgagtgaccatgatatttcaggcactgcaccaggtgctgaaaacacagacatccataaattatattctttgtccaaaaaaagacaaa<br>caattatataattatattacaatggatacgttagacagctcccagtaataaggaatctgacgccaatttcatttttgatgtttgactattgacagctttc<br>atgccctaccctacgcctttcccttttgtcccacataaggggaagataaaaagaaaaccttggggctccattcattggtgttggcggagaagtgcacacc<br>attcaaacccagttcctctgggaacattcactacagccccaccctctcagcacaatagaaaccaaagccactggcttcccttttcactc<font color="green"><u>AAGACATTCCA<br></u></font><font color="red">TGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGT<br>TTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGG<br>GCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCT<br>CCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTC<br>CAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTT<br>TTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTA<br>CATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGACAAGCTTTTTGATGTGCTGCTGAATTCGGTT<br>TGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGA<br>ATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCT<br>GGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAG<br>AGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTG<br>TAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCT<br>TTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTC<br>CTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTG<br>TCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGCGTCCCAGAGATTCTGGTATGTGG<br>TGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGCCCAGTAGTCATTCAGGAGCAGGCACTATTCA<br>CAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAA<br>AAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTC<br>TCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGAT<br>AGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGATGCAGCGCACCTGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCAC<br>ATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAGGAATTTTGATAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACATTCCA<br></u></font>gaccagcttttatgcctgcccagcttttttttagaaagtctcattatgtgagcaataaatcttttcctaccgcttggatggagggatggaagcatcttca<br>gtctaacagtctcatcatcctaaccaattatggatgagtgtttattgccctccacaaagcaaccacaaaacatacccccgcctcctggtattcatgccct<br>tgtataattctctctgcttgaatgtgggctgagcctagtaactagcttcaagcaaatagaatacagcaaaagtaatgggatgtcttttccaaattaaatg<br>tcaaaaagactcttggtttctctcttgctcaacttctattgctctcttgctttctctgatggaaaccagttacctatgaacaggtccac	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	2517	417	NA	intergenic	
0	chr12	42238049	42238886	2000220	0	-	L1HS298;31032;database22; RIP_L1_chr12_040_01	ATATACCATACTCCTTTCCCCTTCC	TGAGCCCTGTATTTTAATCACTTGT	LINE	L1	L1HS	agatgagacatgggtgatggtgatcatggaagggccttaaagccacagcagggactttggcttttactcttgaatttgatgggatgtcatgagaaggttt<br>tgaacagagaaattgcatgatatgacatatatttttgcaaatttttccttgaataccaaatacatgatatatatgtcatatgaaatatgtacatataaat<br>atattaaatataagtatagtatacatatatgtatgttcataagtatataccatactcctttccccttccctccttctttttctccctccctgtgctatta<br>attaaaataacaattttacagttaatcacagtctgtttgtaactcctgcactattgttttatatcacaggagcttaatttatattgcccaatag<font color="green"><u>AAAATA<br></u></font><font color="red">TGTAGCATCCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGG<br>AAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGA<br>TTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACAT<br>GCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACAT<br>ATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGCTGAAATTGGAAACCATCATTCTCAGTAAACTATCG<br>CAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGAC<br>TGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTAT<br>ACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATAAAATAAAATAAAAAAAAAATAATTGAAAAAAAAA<br>AAAAAAAAAAAAAAAAGGAAATTTTGTGCCTTCTCCAA</font><font color="green"><u>AAAATA</u></font>gcttggaaatttacaagtgattaaaatacagggctcaaggttattaaattttgaac<br>ttgttttgctttcatactgttaaaaaaaagttcctcaagggcagggtgcaggttgagtttccctcatctaaaagcttgggaccggaagtgttttaaattt<br>aaaatttttccaaattttggaatatttgcacaaacataatgagatatctgggggatgggaaccaggtctaaacatttatgttttatatataaaccttatg<br>catatagcctgagggttttatttataatatttaaaataactggggcataaaacaaagttttgatggggttttgactgtgacctgtgatatgaggtcaggt<br>gtggaattttccacttggggcatcatatgagggtggaa	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Res. 2004 Jul;14(7):1221-31. Epub 2004 Jun 14.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15197167">PMID:15197167</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1037	80	NA	intergenic	
0	chr2	76526513	76528893	2000221	0	-	L1HS345;239018; RIP_L1_chr2_076_01	CACAGCATTTACCAAAGCACTC	CTCAGTTCATTGCACAGTTTGG	LINE	L1	L1HS	aaagatgtggagctctaatgtagtcaccacgaaagcccatgattgccctatagggtattctgaagcagggacaggctcccagatttcttggtcgttgcgg<br>ggaaagcactgggccttcactccctttccacattgacagggcactggacatactcaccctaaggagagggcacacctgtgggtgaaacagctctccttag<br>ccaagaccaagagggctgagagctgagcactgctgctggccgtaccctcagtccctcccacctgaagggtgatcagggcagcttgtcacagcatttacca<br>aagcactctttacaattctacaaataaatttaccatttcagagctaatttttaaaaaatatataaaattaccaaaattcacttaat<font color="green"><u>AAAACATGGAAAAC<br></u></font><font color="red">TTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATT<br>TGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCT<br>CTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTG<br>TATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGG<br>ACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGTGG<br>TGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCT<br>CTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTG<br>AGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATTCAATG<br>CCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCTCCAAGTCAAT<br>CCTAAGCCAAAAGGACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCCACAGTAACCAAAACAGCATGGTACTGGTACCAAAAC<br>AGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGG<br>GAAAGGATTCCCTATTTAACAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAA<br>TTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGAC<br>TTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCA<br>TCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAAACTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAAT<br>TTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAG<br>AAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAA<br>ACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATT<br>CCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGC<br>ACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAT<br>ACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAACATTTAAAAAAAAAAA</font><font color="green"><u>AAAACATGGAAAAC</u></font>ctaaa<br>agatattgtacccctgttaagcattttaataaaaagttgacaaactgtcccccaaactgtgcaatgaactgagattttagtggggagttgtattgagact<br>gcaaaaaaaaaaaaaccaataaaattataaaccaaacttatttataaatacagttgtcaaaatgtaaataaaacatggactaacataacccagccctgtg<br>gtataatgacatcatgcccaaatatggtttatttacgatatggggtataatacaataggatgtatgattatctcgatagatgtccctaaaagcgcattta<br>atttgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagattgatttctcatt	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	2587	192	NA	intergenic	
0	chr4	44507266	44507731	2000222	0	-	L1HS393; RIP_L1_chr4_044_01	TACACAGAATCTGATGCTAGGAGAG	CGGGAACATAAAGTCATAGCGTAAC	LINE	L1	L1HS	atgcaaataagcagaaaaatacagcaaaatggtgaaaaattattaaagcaatccagaaagcaaacaaatgatagaatatttgcacccattagcaaaacca<br>gaatgacgctttttgtcagattataaacacctgaaggcctggaattacattttgtatttaatttataaatctcaaagggagagagacctgtagtatactt<br>gacccatcactgagagtgacatgagtgctaatttattaataacctgcatgtattatacaataataaatttttaaaaaattgacctcccattttacaaagt<br>acatttatatgtgttacattatttgttcataatataaaactggagaatagagccatttacacagaatctgatgctaggagaggttaaacaac<font color="green"><u>TTACTTAA<br></u></font><font color="red">GAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCT<br>TTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTG<br>AACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTA<br>ATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAG<br>TATAATAAAAAAAAAAAAAAAAAGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAGATTATAGAATT</font><font color="green"><u>TTACTTAA</u></font>atactctagttttcttagttctttcc<br>atacattatagtgcctttctgttttattctgtaatgaaaggtcaactaaaagagaagagtttatactgaataacatagctttataaattcaatgtgatat<br>aaatttaatatgacattaacattaaaatttagagttgtcatttttatatggattataattctaatatcttgaatactctgtctgttacgctatgacttta<br>tgttcccgttaacaaatattttaaacaatgttgatttgtgttaggtgttggacatcctggaactcttaatggagtagtaacaccatctaaggctagccaa<br>tgtaaattgtggtctgaaaagcctttaagcactagccagtataccttgtggtgctattgcatcaag	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	751	277	NA	intergenic	
0	chr15	53956116	53956117	2000223	0	+	L1HS404; RIP_L1_chr15_051_01	CCACCTTACGTTCAGCTGTTAAT	CGGTGATTAGGTGACAGCTTTT	LINE	L1	L1HS	agtagctatgaagctcttcaagagagtgaaataaatatcagtcagtttaccttctgggagttaaattagttaaaatgacacttgatgaatgagatttgct<br>cctgcagaccctagacatctgaaacgcataggtcaagagacattcccccggttctcagctaatactctgacatataatttccactataagatgctaactc<br>tgttatgaatagtgagcaacaaagacacatcaagatggggatgcttggcagctggctcagctcactcactgggctttattcactatagccttatgatacc<br>taagactgtcagtgtggttcaatttcccaccttacgttcagctgttaatgttgaagtttcaatgcatctctataactgtcctt<font color="green"><u>AGAAAAATGACCTTTTC<br></u></font><font color="red">GTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATT<br>GAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCA<br>TAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTG<br>TGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCGATTCAGAGATTCAACTTCTTC<br>CTGGTTTAGTTTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATG<br>GTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTA<br>GCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTTTTTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCT<br>GATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCC<br>AAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTG<br>ATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGG<br>CACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAA<br>TTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAA<br>GCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGA<br>ACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTC<br>AAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTT<br>ACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCAT<br>TGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTAC<br>TGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAA<br>ACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTA<br>TACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGC<br>GTGGGCAAGGATTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAA<br>AAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGA<br>ACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAA<br>AAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTA<br>AAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTC<br>AGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTAT<br>AAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAA<br>TGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAG<br>TAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACA<br>CTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATG<br>GCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATGACCTTTTC<br></u></font>aagttaagaataggaaaaataggttttaaaaacctaaagacaatggattaaatgagaaaagaaaaaaagctgtcacctaatcaccggtttcaatatctga<br>aggaggaaagtacaaacaaaagcaggtgttctaaatggagtcttaagaagagaaatacaaaattcagaaatgtttccatgcattattagctttgaccaag<br>ggagatggtactctgctgggctgaaagcattggctacattcaactctcagagctcagtgaatgaatatcctctgggctctgactccatttccatcaaggc<br>accctgtaatacaatttcccctggcctcagatttgctacagtgagaatgtaccaagcaataaccagaatgccaattaaagaat	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	60	3262	163	NA	intron:WDR72:NM:182758:14/20	
0	chr14	43668869	43668870	2000224	0	-	L1HS561; RIP_L1_chr14_042_01	TACCCATTTAAAGGGCAAAGTG	CTACCCATTTAAACCACTAATGCTG	LINE	L1	L1HS	tcactggaatgaatgtgaaggcttaacttgactattttgaagatatcaaactcatttagtgtataagaaaaaattaattccatagttatacattataact<br>cttaaaagtctcagaaatagctaagtgaggagatttgaatgccagcaaagccactttgtaactccatgacatcaacattaaacattccattccatcccta<br>cctgtaaaattttcacattttttctcatattctcttaaatgcatttttctctctgtttgtatttaacaggaggaaaagtgcagttgatttggggaggaag<br>acttattctgagtaacaggagtaaaaagaggatagttttacccatttaaagggcaaagtgaaacatacaatataagattgcttttt<font color="green"><u>AAGAGTAACTCAGA<br></u></font><font color="red">CACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGA<br>GGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTG<br>CACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAATAAAAAATAAAAAAAAAATAAAGAGAAACAAATGACAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTAACTCAGA</u></font>aatttcaaaatacaaatttgaatagcagcattagtggtttaaatgggtagtgtattactcagggttctcaggagggacagaagc<br>aataggatacacgtatgtacaaagaggagttcattaaggagtattgattcatacaatcacaaggtgaagtcccacaataggccatctacaaattgaagag<br>caaagaagccagtccaagtcccaaaacctcgaaagtgtggaagccaacagtgcagccttcagtctgtggttaaaggcgcaagagtcccaaagctgaaact<br>cttgggagtttacctgatgtttaaaggcaggaagcatccagcacaggagaaaggtttagcctggaagactaagctagtctattccttcaacattcttctg<br>cc	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	430	114	NA	intergenic	
0	chrX	42764614	42764615	2000225	0	+	L1HS564; RIP_L1_chrX_042_01	TGCAATTGACATAGATACTGCAGAG	CCCTTCCCTTTCTGTACATGTCTT	LINE	L1	L1HS	cacagagttgaaaaatgcaattgacatagatactgcagagtatctatgatgttagagtgtaggggttgcttttgttacctttactttccttgtcatcaaa<br>gttaagtcattatcagtttaaaataacctgttataactataagatattttgtaagcctcatggtaaccacaaacaaaatcctgtaatagatgcactataa<br>acaaatagtacagcatcaaaacatactgttagagaaaaacacttaagagcaggaaaacagaaagacagaaatggagaaaggatttacaaaagaaaaaaac<br>aaaaaaaataagtatcaaaatggcagtagaaaatccttacctatcaatatcattgaatgtaaatggattaaattcttcaattagaataaat<font color="green"><u>AGAGTGGTT<br></u></font><font color="red">ATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGAT<br>CCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA<br>GATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTT<br>ACTGTTTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTA<br>AAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCATCCTACTCATCTGACAAAGGGCTAA<br>TATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGA<br>AGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGA<br>GTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTTGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGTAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACACATTAGTG<br>GGTGCAGCGCCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGACATGTACCCTAAAACTTATCGAGTATAATAAAAAAAATAAAATAA<br>AATAAAATAAAAATAAATGAAAAAAAAAAAAAAAGAGAAATGCCATATATAGTCAAAAGTTACTGACTTGTAGAAAGATTTAGCATGCATATCACAAGGA<br>CTAATGTCTTTTAAGTTTCAGAGCCCATGTGGATTTCTTCTTCAGTGAATAAATACATCCTTTAGCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA<br>ATAAAT</font><font color="green"><u>AGAGTGGTT</u></font>gagtgattttaaaaaacaagaaccaaatacatactgtctacaagaaactgacttcacctataaagacatgtacagaaagggaagg<br>gatagaaaaagtgaagaatgaaaaatattgcaatcaaatggacacaaaaaaagagcaagaatagatcttttactagtaactcttttttttaaagtagagt<br>ttaaataaagaatggcaaaaaaggacaaagaaggccattatataatgataacaagatcaatatagcaagagacatacaattttacatatatatgcactca<br>accctgaagcagccaaatatataaaacaaatattaatagacctaaaaagagagattagctacaatacaacaacagtaggggatatcaccacctcactttc<br>agcgat	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	2085	471	NA	intergenic	
0	chr11	55318807	55318808	2000226	0	+	L1HS287; RIP_L1_chr11_055_01	CCTTTTATCTGAAATAAGTGGTTGG	CTTCCTTTAGCTGGGCTGTTCTAAG	LINE	L1	L1HS	aagtaattttagattaagagaaaggttgtgaagatagtatagagagcttctgtatactactcacttagtttcccttaatattttcttcttacactactat<br>ttgtgaagactatgaaatgaacgttgatatatactattaactaaacaccaggtttattcatatttgactattttttctcctgtcttttttctattctagg<br>attcaatcttaaacaacacatcacatttaagactcttttaaaatgatttaaaaccataaatcttgttatcatacattatgaagatgctatactttctatt<br>gtcaaagtttccacactaattttggaaattccttttatctgaaataagtggttggtttctttatatctactaaatattttaattc<font color="green"><u>TAAAATGTTATTCTT<br></u></font><font color="red">TTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAG<br>CCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGT<br>TTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTGTGTCCTGAATGGTAATGC<br>CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAG<br>TTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATC<br>AGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTG<br>TAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCA<br>TATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGCATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGGTCTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAAGTTAAAAAAAAAAAATAAAATAAAATAAAAAAAAAAAAAATAAAAAAA</font><font color="green"><u>TAAAATGTTATTCTT</u></font>ct<br>tagaacagcccagctaaaggaagtggagagattaagaattgtttaattattagattaatatagaaccttgtctttctttccatctccaacttttatggag<br>ttttctatgtacaatgaagctatttgaaatagaagtggatatttgacagaatgggggccacagtactttattcagggattactaaagacatttaaaagtg<br>ttgtgcattttaaaatatcatgtctgcactgagacagaccaaataaaatatttaacatttttcaaaatttatttttatttttatttttttctcttttaaa<br>atttttttattatactttaagttctagggtacatgtgcacaacgtgcatgtttgttacatacgtatacatgtgccatgttggt	Other	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	61	1693	95	NA	intergenic	
0	chr9	113179381	113185474	2000227	0	+	L1HS260; RIP_L1_chr9_110_01	GGCAACGGAATAATAGCTTCA	GTCAGCACTCCCATCTTAAATGTCT	LINE	L1	L1HS	tagtcatctcatagcaaaacactaaaacaacaaagacaagtttttaaaaagtaaccaaagagaaaacatattacttatacagcaacaagaatttgaccag<br>agtttctcaatttcagcactactgacattgtggaccagatacttcttagttgtggaggactgttctgtacattgtaggatatttagcatttttcctagat<br>tctaactattagatgctagtagcatcttccccccagttgtgacaaccaaaaatgtctccagacattgccagatgtccttggagggcaatattgtccttga<br>ttgaggatcactaaattagactcataaaggaattctgaatagcaacattagaatcataaggcaacggaataatagcttcaaaatacttatg<font color="green"><u>GAAAAATTG<br></u></font><font color="red">GAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACGGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCCAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTAACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCGTATCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGAGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGATAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAAAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACAGAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAGATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACTCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTAGGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCACATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCCTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAACAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATAGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAATCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGCGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACGTGTAC<br>CCTAAAACTTAGAGTATAATAAAAAATAATAATAATAAAAAAAAAATAAAAAAATAAAAAAATAAAGTAAAAAAAAAAAAAAAGAAAAAAAAAA</font><font color="green"><u>GAAAAA<br>TTG</u></font>tcaatgtagatttgtatattcagctaaactacaattcaagagcaagggcaaaatactattagtttctgaccaagactgtgtaattcatgactcttgc<br>tggaaaagatgcaaagaacatcttcaggaagtagaaacatgaaactcaaatggaaggagtgtgatgcaaaaagaaatagtggtgaaaaaattaatagaca<br>tgtaaataaatatacataagcagtgactgcagttaaaaaatgactgatttggaaagctgtaagataaaagggaagtaaaaaggtacatagtgataagaca<br>tttaagatgggagtgctgacagaagttaatgctttctaaagtcttcaagttgttcaggaagaaggcagaaacattaagtatgatcttaggatat	UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	57	6461	358	NA	intron:SVEP1:NM:153366:36/48	
0	chr1	218182503	218188594	2000228	0	-	L1HS314; RIP_L1_chr1_214_02;AC196548	TGGCTAGCAAAAAGGTGGAC;NA	AGGGCAGAGAAAAATGGTCA;NA	LINE	L1	L1HS	cttttgatcaaaaaatacaaagtcttaggagagaaaaaaaacaaaagcatgaaggccttttaaacacaaacatacatgcacacatacacacacagaactt<br>ggacgttagcttttaattaagctgagttttaaccattgagctcgttaaagaaaatctttttgaagcttattaccatatttcagctaggacaaattactgc<br>catttcaaaagtaccaaatatcaaaccagaaaggtcttgatttagaaaccataccctggctgtcatgtgaaaagaaaagaaggcagaaccttagccatgg<br>aactgcagcatggggtaacagtcattgctctttcagtttggcctggctagcaaaaaggtggacttgttatgtaaataaatcccctt<font color="green"><u>AAGAAGTCAAAATA<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTGC<br>CGGGTTCATCTCACTAGGAAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCGCCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGGGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTATCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGCAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACTGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACCTTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTGCAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACACTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGTAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAGAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTCCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACTCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTAAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTGAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAACTCCACATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATCGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAACCCCATCAAAAAGTGGGCGA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGGAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAA<br>AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTT<br>TTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCA<br>TCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGAC<br>TTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTC<br>ATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTG<br>GGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAATTCACACAGCTGTACAAACAAATAATGACTGAAAAAAAAAAAAGAATGTTTTCTATTAAAAAAAAAA</font><font color="green"><u>AAGAAGTC<br>AAAATA</u></font>aaaatgtttcctttttccttttttccttttggtgaccatttttctctgccctccttaccatgtttttctttttttatgagaatttagccacttc<br>agagaacttgttcccaataatttggaaatttccttcagatttgatcaagtcagatagagttggtcaaacccaatgggaaaaagaatgaaatgacaacaga<br>aacagaaacaaacaacaacaaaaattagtcaagataagcaatcacaccacttgtatgattactaagcactctaatggtgttgggaaaagctgagtgttgg<br>gagaagctgaggcagggcttgcatgtctgacataaggtaaaagagtcttggaacatgtctggggtccagggtctaaaaccccttgtggcctt	UCSC;UCSC	<UL><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	58;NA	6215;NA	109;NA	NA;NA	intergenic;intergenic	
0	chr5	41599451	41600123	2000229	0	+	238538;L1HS442; RIP_L1_chr5_041_01	GACGGTTACTCAGAAAAACACAAG	GTAGATGCCACTGTTACCCTGACT	LINE	L1	L1HS	ttaataatgttcaaactagcagaggaggtggaaagcatcatgagaaaaacgaaatatctaatccaaaaagatgcaagaaatgagggagggcagagaaaca<br>gaaaatgtagaacgataaaagaacaaaataaaatgatataaataaatcaaatatatttgttatcatagtaaatataaatacactaaactctccttaaaag<br>acaaagagactggattttttttaaagacggttactcagaaaaacacaagaaattagtacatgtagtaaacagaacaatagaaaagagaaaatcttccgag<br>tgggaagataatagataaattctaaaagtggaaaaccaagaagtaccaatataaagcatgttctttagagaaattacaataaataaataatgatc<font color="green"><u>AGAAA<br></u></font><font color="red">CAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCGACCATTGTGGAAGTCAGTGTGGCGATTC<br>CTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTGTAAATCATGCTGCTATAAAGACACATGCA<br>CACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATA<br>CACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAA<br>GAACAAAAAACCAAACACCGCATGTTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGT<br>GGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACA<br>TATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAATAAAAAAAAAAAAAA</font><font color="green"><u>AGAAA</u></font>gtttaattgtctctgagcagca<br>ggaagtcagggtaacagtggcatctactgtttttcatacaagaccttgtatggtaaacaaccatttttatcttcaaactgtgtacatgtatacattttta<br>tttctttatttattttaaacaagaatgccttactatgctacctttcagttaggttattttgtttcactacatggtatgtttaagcttagttgtgaaataa<br>agaattcgtgactaaattctacacatttactaataatgagtatatagatccaaggtctaatcaatatatattggaaaatgaataaatagtgaattaatga<br>atgaaaaattaaatgttcactttgtattgaatgtcaaaaccatatataacctcctttaattactataaacaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. A comprehensive analysis of recently integrated human Ta L1 elements. Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12070800">PMID:12070800</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	907	224	NA	intergenic	
0	chr4	66641121	66641421	2000230	0	+	L1AD77; RIP_L1_chr4_066_02	TCAAGGAAGGGAGTTAAAAA	ACTTCTTTCATGCCCCTTAT	LINE	L1	L1HS	aatatcttttaacaaaatatggtagacacaaaagaatacactcactgcaattctatttatttaaagttaaaaggcaaaaatattgtttagggacattctc<br>tagtgacaaaaacatttttaaaacatggtagtgacttagataaaaagtggagctggtcaaagagcacacatttcagtttgtaagatggacaagttctgga<br>tatctatggtatagcatgggtggcaatcaaataatttatttgattatggtaatcattatgcaatatatatgtaagtcatcacattgtcacattacttctt<br>gaatatatataatatttgtcaaataaattcttaaaaacaaatatcttgtgctaaaaaatttaaaaatctgttattaattttaaaatattt<font color="green"><u>AAAATAAACA<br></u></font><font color="red">CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACCTGCACAAT<br>GTGCACATGTACCCTAAAACTTAGAGTATAAAAAAAAAAAAAAAAAAAAAAACGAAAAGTGATCCAAAAAAAAAATAAATAAAAAAAAAAATAAATAAAA<br>T</font><font color="green"><u>AAAATAAAGA</u></font>ttagaatagtggttacctttagagggataaggataaggggcatgaaagaagtttcaggaatgttgtccatcacctatcttaacataggt<br>agcagttacatgggtatttgcattctgaaaaatcattgagctgtacgattttacagtactctttttatgtgtgttacatgttataacgaaaataaaggta<br>tgactatagaatgggtccaaaatggttatattataaacatcgtagacttatgattatctaaaatttcatagattgtattatttttattatcaatgtttat<br>cttcataatcagcttaaaattagatggcattattcctcttgtattgatgatgaaaacactctcagaaaggctaagtgatttccctataatttttagctag<br>g	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	991	729	NA	intergenic	
0	chr16	84489371	84492101	2000231	0	+	L1AD82; RIP_L1_chr16_083_01	GGTGTCTCCACAGTTGATTC	CCACCGCCAGATTTTACTA	LINE	L1	L1HS	gtgtggggtgagaaaggattaaaatgaacatcttccgtttgaggcctgcgtgttgatacatatatctcaggcattgcaaagagacctgggcagaaacacc<br>cccatcgctgaccacggaggtgctctctaggttctggggcttgcacaaaactatttgttctgtttcacttttctgtatttttttcttaatacatttacct<br>tcctaattttaattagttctgagactctcctcataagctaatcgcagtggttagttgggggtgagggaaaactttttaagcctgatacaaaaaatccaaa<br>taaacaaatattgaggctaggtggatcgtgcactttacaaaggtgtctccacagttgattcgccataggaagccttaacacacttag<font color="green"><u>AAAAAAAAAAAAA<br></u></font><font color="red">AGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTT<br>TTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATC<br>CCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCA<br>TCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCC<br>CTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTC<br>TTTTTGGTTGGTAAACTATTGATTATTGTCACAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGT<br>ATGTGTCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATT<br>CAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCA<br>GACGACATGATTGTTTATCTAGAAAACCCCATGGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATG<br>TACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATA<br>CCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAAC<br>ATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGA<br>CTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAAGCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGG<br>AGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA<br>ACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAAT<br>GGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAA<br>CGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCA<br>ATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAA<br>CATGGGAGAAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCC<br>CATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATC<br>AGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTG<br>GAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAAT<br>ACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTA<br>TTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCA<br>TAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCACAT<br>ATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGGA<br>GGGATAGCATCGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAAT</font><font color="green"><u>AAAAAAAAAAAAA</u></font>tttaaataaaaaaaaagtcataatatcagctctatagttcttttcaaaatatttta<br>gtaaaatctggcggtgggggcacccacggtgcgtaattgtttttctacattagtgaccccaggtcaaggtttaaaagggcttccgcgaagagccttctaa<br>agacagaagcaggcgatgtccttcagcctccccatccctccctccttaccgtcctccggacctcatttttaggccgaactggttttgctgcgtctctctc<br>tcctctttggtaaatcgcggagatgcacggcgcacttcgggagtctgggcagggatggggccccctgggctcggccggagagtaattcatggtctgattg<br>gaggcatcaggtgtacccttggcacagaagg	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	2876	117	NA	intron:ATP2C2:NM:014861:21/27	
0	chr5	166393766	166399820	2000232	0	-	L1AD100; RIP_L1_chr5_166_01	CCTGGGTCACAATATGAAGA	TCTGATAACCAGAAGATGAAGA	LINE	L1	L1HS	cgcgatctccactcgctgcaagctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccacacc<br>tggctacttttttgtattttttagtagagacggggtttcactgtgttagccaggatggtctcaatctcctgacctcgtgatctgcctgcctcggcctccc<br>agagtgctgggattacaggtgtgagccaatgtgcccggcctccaaaaaccctttacataattgctcagagcccataaggaatgagaagacaagaggtaaa<br>ctgctatttctaggaaattaataatagtaagaagtagaatctgataaccagaagatgaagaagataaaatttaaatttcccataaaaaa<font color="green"><u>TTTGAAGGCTT<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCTAACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACTCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCCCTAAACATGGAAAGGAACAACTGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACTCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATTCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACATGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCTC<br>TCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGGAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACAATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGCCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTTGAAGGCTT</u></font>aatttaatgtgtaggtaaggcttccaatactgca<br>tttcaatagcacttctggatgtcttcaaattacaatatggtaggacagcaatgatgttaatgatatttacgttgaatccattcttcaattgcagtgtaat<br>gtcaaaaattaaagcctggattcctcagtctatcacataaggctcttcatattgtgacccaggagtgggatgtgcttttcctcacataaaccaatgcgct<br>ccaacacactggatcagcagtgactgcgtggataggtatttggaggccatatctacacaagcaacattgttctgagtgatgagattgattcgttgatggc<br>tgctgctggtagggacctagtatagtgctgcaaatgccatgcatttccccaatat	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	6324	258	NA	intergenic	
0	chr2	2261420	2263187	2000233	0	+	L1AD135; RIP_L1_chr2_002_01	CTCAAGGGTTCTCATCACTAA	GGAAAGGATACCACAATCAA	LINE	L1	L1HS	tgaaacacacagcccctgcaatttgctattatgactttgaacttggggctcatattggaaatgactgacggttttctctatcgatgatgtcttaatgccc<br>tgggattgtttttccaggttggagccataaggaccttgaaagatccaatcttggctgcggtggcttatgcctgtaatctcagcactttgggaggctgaag<br>cggttggatcacgaggtcaaggatgaggagagatgccattcaaggaacagaaaaccttaccagacaggaaaagtaagtcctggagctctaacgcacagca<br>tggtgactatggtaaatagcactgtatcgtctatttgaaatttgctaagagagtagcctcaagggttctcatcactaacttttt<font color="green"><u>AAAAATGGAACTATGT<br></u></font><font color="red">AAGTTGGATTCCTAGGTATTTTATTCTCTTTGAGGCAAGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACA<br>CAAACAAATGGAAGAACATTCCATGCTCCTGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATCTACAGATTCAATGCCATCCC<br>CATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGC<br>CAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAGGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATA<br>TAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGA<br>TTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGA<br>TGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGT<br>CCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGT<br>GAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATCTACAAG<br>AAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCT<br>CATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAG<br>GTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGG<br>GATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTA<br>TGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCAT<br>GGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAA<br>AAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGG<br>GTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTA<br>ACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAACATTAAAAAA</font><font color="green"><u>AAAAATGGAACTATGT</u></font>gaggtgatagatgtat<br>tagttagcttgattgtggtatcctttcctaatgtatatatatatcacatcatcacattgtgtatcttaaatacatatagtttttatttgtcaattatatt<br>ttaaaagagctgaaaaaaaatcaggaatatgtccccaaagtgaaaattgtgacctgaaaatctccaaatctttaggattaatgggaaaattaaaatcaca<br>ttctgactgaccctcgtcttatagaaaatgtggctagtatcgatccattccagggagtgctaatccccctgggatggatgtcaaggtacgggtcatcccg<br>acggcagatgggcttcaggattgggaatcctgggttggagccctgtcaatgtgtgtcgctggccaggt	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1871	87	NA	intron:MYT1L:NM:015025:2/25	
0	chr1	189084944	189085239	2000234	0	-	L1AD189; RIP_L1_chr1_185_01	TGTTTCATGGAGTGTATTTCA	TGCAATGTTAGAAGAAGTGG	LINE	L1	L1HS	acaggggtttggtgtacagattattttaccactcaggtaataagtatagtacccaataagtaatttttaaatccctatcctctttcctgcctccaacctt<br>aagtaggctcttgtgtctgtttcttccttctttgtgtccgtatgtactcaatgtttagctccctctcataagtgagaacatgcagcatttgttttctttg<br>tccctggtttagttcacttcttatcaaaaacgatggaagctagaaagtagaggaatgacctagtcaaagagctgcaagaaaaaaaaggataaaaaatgct<br>caatgttgaatcttatgtccggaaaaattatctttcaaaaattaaactgaaataaggacattaccacataaagaaacactcaagaatgcaatgt<font color="green"><u>TAGAAG<br></u></font><font color="red">AAGTGGTGAAGAATAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACACGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGATGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATAAAAAAAAAGAAAGTTCTTTAGGC</font><font color="green"><u>TAGA<br>AG</u></font>caaacaacagtataaagtaattagaatacacacaagcagagaatgccagtaaagataattataggtaagtataagaaaatatagttatgtacttcttc<br>ttctttcttttctcaatggattgaaatacactccatgaaacaatactatgaacaactttgccaaacatagattatttagataagatgggcaaattcctaa<br>aaagacaaaaatcaataaaactgaatagaaataaataaaaattgattatacctattataagcaaagatattgagttagtaattatcttattacctcaaat<br>caaaatttagaaaaatatacctttattggtgaactctgccaaacatttaaaaatgaataaatatctcttttacaagtcttataattgcagaagtga	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	456	198	NA	intergenic	
0	chr9	88426132	88427784	2000235	0	-	L1AD208; RIP_L1_chr9_085_01	ATCTCCTATCCCCTTAGCTG	AACCCAAGAGTCACAGTTGA	LINE	L1	L1PA2	aattggtacaaactatttaaaaatttgactaagcatgcctgactccattgcaaagtgttttgaaactttatcaacatctggcccctatataagctaaggc<br>tttaatctttgaaataaaaaagtttttaggcattgagtagtaggtgagtggtcagccactgaaaagagtcaaagacctaaagattacacataacatacta<br>cagaaggaaaatacctatctaccagaaacccaagagtcacagttgagactatatcttaaatagtgggcatacaatagataataaatgtttcttgaatgaa<br>tgaaaaaaagtaacaaaagaaacaaaaagcaaacagaaagtattatgacaaatactgttaatcaagaaaagaaccaatgacaaacactca<font color="green"><u>AAAGACAAAA<br></u></font><font color="red">TTATTTTTCTGGTAAAGCAGCTACTTATGCTGTGTCACATCAGCAACCTATGTGTTAACATGTCTTAACTTCTAAAAGGGTAAAATGGAAAGGGGGAAAT<br>GCTCCTTTAATGACCCCTTGTTTGATCAGGGTAAAGTGCAAAAAAAGAGTAAGATAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTT<br>TCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCT<br>TTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTT<br>GTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTG<br>GGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAG<br>AAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACT<br>CAAACAAGTTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAA<br>CACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAA<br>AGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCACTGTGGAAGTCAGT<br>GTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAA<br>GACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGACGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCACACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAACAATAATAATAAAAAAAGAAAAAAAAAAAAAAAAGAGT<br>AAGATAGTGCAGCCACTTCCCATTATATTATACTTTACATAACAGTAAATATT</font><font color="green"><u>AAAGACAAAA</u></font>aatagcactacttaatctgcagctaaggggataggag<br>atgaaacaactggaagggttcaatcatctgagctatgctatacttaaaaaaaaaatagccaacatatcaacacatcatctacttcaacagccttgacaga<br>aatctacatgctatgtcaaaaggtacaatgaccagtacttcagaagtagaagagaaggaaatgtaattttaaatgaaagaagggaataaaacttaatatg<br>aaaataatccccaatttgtaaatatgtctattattcatacacataccaaaatgaagaaagaaatgcatgggattactcactatgcttattttcctttcta<br>tagtttttactatttccccaaatattctacaatgactatatacatatatatat	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1978	530	NA	intron:LOC389765:NR:029410:1/9	
0	chr6	127938085	127939718	2000236	0	+	L1AD230; RIP_L1_chr6_127_01	GCAATCCATAGACAACCAAT	AGGAGGAATATGCAAACTGA	LINE	L1	L1PA2	gtttttaaagtgaccggaatgacagcaagctatttagataaaaggaaataataaaaagtactcattgcaaaacaaggcaaaaagagagaaggcgataata<br>aagggacatacctctttgttgttgttagattcaatctaaacatataaaattagattaaacataaatgagttaaacatacaagttaaagtctgtgattgtt<br>tggataaaaaaattaagactcaattatatactgtaagcataagatagctgtaaacataaagacaggataattaggagattaattttgtgagaattccagt<br>ctctaaaattttctacttagaaatttaattttctgaaaataatagttcaaatatcagaatacaagacacataaaaagcattttt<font color="green"><u>AAAAAACTCATCTTTC<br></u></font><font color="red">GAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATT<br>TTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTA<br>TGGTTTTAGGTCTAATGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCATCTTTCTACATATGGCTAG<br>CCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATT<br>ATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGT<br>CAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTC<br>CAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCAAATTTTCGCAACCTACTCATCTG<br>ACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACA<br>CTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATAT<br>CATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGG<br>ACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAT<br>ATACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAA<br>TGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGA<br>CATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATGGCAAGAACAAAAAACCAAACACCGCATATTCTCACGCATAGGTGGGAATTGAACAATGAG<br>ATCACAAGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGAT<br>GACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAA<br>AAAAAAATTAAAAAAAAATAAAAAAAATAAAAAT</font><font color="green"><u>AAAAAACTCATCTTTC</u></font>atggatttttaggctatatgtcctataaatgtaactctcattataaagtt<br>taaaaaataatttgtccaaacaaataattcacttcataatttttcattatttgatttgaacctcaggtgtggatgggcatctgtgaacagtttggacata<br>attattcagtttgcatattcctcctgaaaacagtccatagattctctgaataaagtggggcattacggtcgatttttctagtctgtgactatatgagtgt<br>tagttcttctccacagctcattggagccagtgtggtgtgcacaccaaacatagggaaactaattcagaggctacattctaccagaacaaacgtatctcca<br>gggcatttgtgttttgaaaatgatgcgtcatttt	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr14	51520209	51520589	2000237	0	-	L1AD240;1664; RIP_L1_chr14_050_01	GTCTCAGACACACAAGCTCA	TTGGCCACTCATCTATCTTT	LINE	L1	L1HS	tctcctctgtataagtcataaatcatgctctcaaatgatgtcaatggttgggcgtggtgcaatacacctatagtccgagctgctggggagactgaggtgg<br>gaggatggtttgagcccaggagctccaggccagcctgatgagatcttgtctctaaaattttttttaactttttaatgatgtcaaaatgatttctaaagaa<br>agattaattctgtgacagcctctggacttcaattactaagttttaagataatcaattttaaaagttaatgttggccactcatctatctttagagatggta<br>gctgattaaactgataacatgctttattagtgattttaagacagcaaaaccattgtagattcactcttacccataatatatttcttttca<font color="green"><u>TTTTATAGTT<br></u></font><font color="red">AGTCTTTACTTTGGGCAATAATTTGTAATTCTTACCATCCATAAGAATACCTGTTCTGCAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGCGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAACATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAATTAAAAAAAAAAAAAGAAAATTAA<br>AAAGTAAAAAAAAATAAATAAATAAATGTAATGTTAACGCATAAAAAAAAAAAAAAAAAAAAGAATACCTGTTCTGATCAG</font><font color="green"><u>TTTTATAGTT</u></font>gagcttgtg<br>tgtctgagacattctcagagtgtgaactacaaactgatacaaactgagtactgaatgaacttttctgcatttgagttgaagcatctcctatcatgagtgt<br>gcactgactcatcttaggactcttaaggtttgataaatactgtgggaggacctaaaataaaactcattttattatcattaattaagtatttcataaatat<br>gaaataaaagtgctctgtgtaagacattttttaagattctttttgcgtttttcttttgtttttactctatagatagtaaaatgacaagttttcttctctt<br>ttttttttttttgaaacagggtctctctctgtcacccaggctggaatgcagtggcacaatctcggctcactgtaacctcca	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	540	222	NA	intron:TRIM9:NM:015163:1/10	
0	chr11	94073806	94074666	2000238	0	+	L1AD361; RIP_L1_chr11_093_01	GGAAAAATGACAGTCAGGAG	GCCTACCCAATGAATATCCT	LINE	L1	L1HS	catgcgtgggacagactcgtagaaacacggcaaagtcattgagaactaaattaaaaatttaaaccactcagtggccagtctgaatggcgcatacgtgaga<br>taaacctgaaacagcagagcaaagatttgaaaactgaactgagattgaaaccactggtcaaaatggaagagacagaacttgtaggctaaactgaagtgga<br>tcgatttcctgctaaaacgaaaaatcaacattctttacagaattataagggggttcaagtctaagcaacacaatattcaaaatggctaggatacaatcca<br>aaattatacgacgaacaaagaaccaagaaaatgtgacaaattttcaaggaaaaatgacagtcaggagatgccaacccaaggagggcccagat<font color="green"><u>ATTAAAAT<br></u></font><font color="red">TATCAGACTTTCAGTAAGCTATTATCACTTTGCTTCATGAGATAAAGGTGGTCTCACCTGAAGTAAAACACATGAAGAAATGCTCATCATCACTGGCCAT<br>CAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGT<br>GGAGAAATAGGAACACTTTTACACTGTTGTGGAACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAAT<br>ACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTA<br>TTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCA<br>TAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCAT<br>ATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGCGGGAG<br>GGATAGCATTGGGAGAGATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGT<br>GCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAACCTTTAAAAAAAAATAAA</font><font color="green"><u>ATTAAAAT</u></font>aaaaagaaagaaaacttgttaacagaggaaa<br>aaaaaaaactatgaaaaaagaaagggaaatttcaaaaatgaaaaataaaacgtgaaataggatattcattgggtaggctaaatagaatgtttatgacgga<br>gtacaagttagtaaacttaaaaatagatttttaaaaaaattagaagaacaaaaagaaaaaccttgacaaaaaaatagagatgtaggaacttacaggacaa<br>catcgaaaggtctaatatacatctcattggagtctaaaaagtacagaagaaagagaacatgacagaaaaaatatttgaagaaaaaatatacctgaaaact<br>tctcaaatttggtaaaaagcatcaacattcaggttaaagaagttcactgaaattcagagag	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1031	149	NA	intergenic	
0	chr21	32212253	32214181	2000239	0	+	L1AD371; RIP_L1_chr21_031_01	CTAAATTGCTCCATTCCTTG	ATCACTGTAGGGTGATCCAG	LINE	L1	L1HS	gtcaatgagtcacttgtatgagtcttctaactttgaagctacccgtgctctccatctcaatatcttcacagggtgaatacagactgaggccaacagaaag<br>ataccaggaaatggtagctctcaaaaagcattattaaatacatttaactcagctatgtttctgaggccctatccacctgtcagagtaaaggttgtccaga<br>ataattatcctgatgatgctttttgctacaccttctctctaaattgctccattccttggttttatcactgagaaacatggcatgagctttaggcaggaac<br>tgagagatgtctcttggttcagtctagtccaagaatatgttttcccaattttccaaaaattgggggaaaaaactgattttttttaattc<font color="green"><u>TTAAAAAAAAA<br></u></font><font color="red">CAAAGAACATCTTTATTTCTGCCTTCATTTCGTTATGTACCCAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCAGGTAGTTGAGCGGCTTTGAGTGAG<br>ATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCA<br>ACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCCG<br>CTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTCGTTGATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTAT<br>TAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTTTATGAATCTGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGC<br>TCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTG<br>CAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGCCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTG<br>AATATAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCTGTGTCTTTTAATTGCAGAATTTAGTCCATTTATATTTAAAGTTAATATTGTT<br>ATGTGTGAATTTGATCCTGTCATTATGATGTTAGCTGGTGATTTTGCTCATTAGTTGATGCAGTTTCTTCCTAGTCTTGATGGTCTTTACATTTTGGCAT<br>GATTTTGCAGCGGCTGGTACCGGTTGTTCCTTTCCATATTTAGCGCTTCCTTCAGGAGCTCTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAGCAT<br>TTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAAATTCTTTTCTTTAAGAATGAAG<br>GACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAA<br>CCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTT<br>ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGGCCCAGCCATC<br>CCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTT<br>GGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>GTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACT<br>TAAGAGTACAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>TTAAAAAAAAA</u></font>aaaacataaacaacaacaacaacaaaaaaacagagtttctctcttatcgcccaggctgga<br>atacagtggcgctacctcagctcactgtaacctctgcctccagggtttaagcgattcttctgcttcagcctcctgagtagctgggattacaggcaaccac<br>caccatgcccggctaatttttctatttttagtggagacagggttttgtcatgctgaccaggctggtctcgaactcctgacctcaggtgttacacccgtct<br>tggcctcccaaagtgctgggattacaggggtgagccactgcgcccggccaaaaaacaaacgaacaaaaaaaaaaaaccaaaaaaaaaaatcttttttaaa<br>acccaggttatcggagctcataaatgtga	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	2525	581	NA	intergenic	
0	chr2	134966718	134970130	2000240	0	-	L1AD10; RIP_L1_chr2_134_01;AC225996	TGTATTTACCGGGGATGAGG;NA	GCTGTCCCAAATTTCCAGAG;NA	LINE	L1	L1HS	aatcagcattctatgcccagtgaagctcggcattcaagctggctcacttacgccatcactcaggagacaagcaagtctcaaggtcttactgatatcttcc<br>ctctctctggaagataatagttggatacactggaactgaataatagaggattatctctggagaagtgcaagaatacaatgaagaagagggaaacagactg<br>aaagtatggggaaatccaacctcttcccaccattttccatggaaaactcgattcttgatttttcaggaagttggagctgtcccaaatttccagagagctc<br>tgatttaacattttcccaaggctgggcaagaggcaacccaaagatcaagttgatcattttacggggttttatgttgttatgtt<font color="green"><u>AAAAATAAGCCAGTTCT<br></u></font><font color="red">TATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATG<br>ACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAA<br>AGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAA<br>AAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAA<br>TCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACAC<br>AATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAAT<br>CTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTG<br>TGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCT<br>TCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACC<br>AAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTA<br>TCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAA<br>AAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACG<br>TATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGTACAAGAC<br>AGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAA<br>AGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTC<br>AGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCAT<br>TCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAAT<br>AAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTC<br>AATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGT<br>CAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCA<br>AAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAA<br>TGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAA<br>TCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAA<br>GGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACCGCAAAAGAAACT<br>ACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAAC<br>AAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACAT<br>GAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCA<br>GGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGC<br>GATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACAC<br>ATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCAC<br>ATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTAT<br>CGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGG<br>ACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGT<br>ATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAATAATAATTAAAAAATAAAAAAAAAAATAAAAAAAAAA<br>AAAAAAATAAAAA</font><font color="green"><u>AAAAATAAGCCAGTTCT</u></font>atatacaatccctctgcccatccacctcctcatccccggtaaatacacaaaaacaaaagaggaagacaag<br>tgactgcaagtgacacaggggaagtgaggtctgggtcttcccatgcacaaggcctccttcatgctgatgtaacagaacaccaggaaaccctgctcccaga<br>acactggggaaaaacagacactgaccacaacactggggcatctccttattgattctctcggttatttattttccccagaggctgggagtaagataatgct<br>ttcctaaaacaaagaatatggtataaaaacaaaattttttagaagtccagccaagaaaggccacataggtgggtaaggtaatgttttattaaatgtttac<br>attccctagatat	UCSC;UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	3602;NA	172;NA	NA;NA	intergenic;intergenic	
0	chr2	119653330	119659368	2000241	0	-	L1AD14; RIP_L1_chr2_119_01	TTCTGCAACTATAGCCGTAA	ACAACAGACACAGAAGCAAA	LINE	L1	L1PA2	gactccgacatctgagatttggggttgggagacgcgactcagcccataacacaggctgttcttttcctctcagtgagaagatgtccacaggaaaacacat<br>gctaacttccactgcaagtgagagagaaggagcagatcagggagaagggaaggaagagaagaaggaaaaaggaaagatccctgggaggggcagggatgag<br>gcacacagccatccgcagagggcttcagtgggtgtgggcatcactcagctctaagggcccacccacccggacatcagggccaaatctacagacaacaaca<br>gacacagaagcaaagagagtccactgaagccacttcaggccaaggtatggtgccagcttgctgtgtgcagagggattggtggtaatga<font color="green"><u>AAGCCAGTGCCG<br></u></font><font color="red">GAAGGAGGAGCCAAGATGGCCGAGTAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCTCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCAAAGCAGGGCAAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAAAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACACCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAAAGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGTTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTGCACCTCTAGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCAAGCAGAGGCATACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACGCCAAAAACCTATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCGGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCAGAATTTCATATCCAGCCAAACTTAGCCTTGTAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGGACAACCGGTACCAGCCACT<br>GCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAACTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCTCAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAATAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGAAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATAAAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAACCCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAAGAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACGCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAAAAAAAAAAAGG</font><font color="green"><u>AAGCCAGTGCCG</u></font>agaagtttacttacggctatagttgcagaagatattcataattaattgt<br>gtaggtttaagtgcttatgaaagtttatttataatcttaactgtagtccctgcattaggtttatcttaaacagaatcctaatttgggaacttaggaagat<br>atgcatcagctggtctgtttcaatctgggtgagctctgctcttcctgtgggctcttacggcctctacctgaggcgggcggatcacaaggtcaagagatcg<br>ggaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacgcctgtagtcccagctacttgggagg<br>ctgaggcaggagaattccttgaaccagggaggtgaaagt	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	6187	136	NA	intergenic	
0	chr16	60930389	60930701	2000242	0	+	L1AD20; RIP_L1_chr16_059_01	CATTAGCAAGCTGATTCAAA	CTTTTGCCATGATTAGTGGT	LINE	L1	L1PA2	tatactagcaaagaacatttgaagatagcatttacagcaggatcaaagaaacatgatatacttatgcataaatctaaaaaaagtgcataatgtatgctaa<br>aaattataaaacaatgatgaaaatgcaattaaagaatgtataaataaggagataattaaaccatgttcatgaattagaagacctaataatgggatgtcaa<br>atatcttcaattgatatatacaggcaatataatatgtgttcacctttatgtataataaaaatatcaacagaattcttatgaacattagcaagctgattca<br>aaatatttatggaaattcaaaaaacacagaagagttaaaatcattttgaaaaaagaataatattagaggactcatactatctgatt<font color="green"><u>TAAATACTTACTAT<br></u></font><font color="red">CGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGG<br>ACCGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCACACCAGCATGGCACATGT<br>ATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATTAAAAAAAAAGTAAATAAATCTAAAAAAAAAATAAATAAATA<br>AATAAAAAATAAA</font><font color="green"><u>TAAATACTTACTAT</u></font>aaaactaaaaccactaatcatggcaaaagtctggacatacagatcaatgaaacaggatacagaattaaaatgc<br>tgacttataagtatggtcagtttgtatttcataaaagtgcaagagaaactcaatggagaaaatattgtcttgtaaacaaatagttctggataaactggtt<br>gttcacacacaatgttttaaaagtactgtcatattccttgcatgcaaatatttaaaaattaactcataatgcattagtgacaaacatgaaacctaaaatt<br>ataaacatactagaagacaatcatcatacaattaaattagtcaaaatattcttagatataacatcaaaagtagaattcataccataaaaattcaggttaa<br>ctgtacttcatca	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	474	147	NA	intergenic	
0	chr16	60910046	60913916	2000243	0	+	L1AD19; RIP_L1_chr16_059_02	ATATTGGCCAAAGCCTCTTA	TGGCAAGTCCTGAATGATAA	LINE	L1	L1HS	gggtgagcattgaaatcaatgtgtccattgaattatattcttcaaaaatattgtattaaatcaattatgtatcttatagttgatgccatcttagaattga<br>aattttaaaaaatcattcaagtccattaaatttttaaagccatatatatgctttatttttattatttaatttattattattcttttgagacggagtcttg<br>ctctgttacccaggcaggagctcagtggtgtaatcttggctcactgcaccctccacctcccaagttcaagcgattctcctgcctcagcctcttgagtagc<br>tgggattacaggcatgcgccaccatgccagctccctcagtttcttgaagtacatgggagtcatattggccaaagcctcttaaagt<font color="green"><u>AAAAGGAAAAAAAAA<br></u></font><font color="red">TTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCACTTCTTCTAGATT<br>TTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTG<br>TCTATTTGATTCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTGATTT<br>TTTGAAGGGCTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTTAGTTATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTC<br>TAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTTCTCTTGTAGGCATTTAGTGCTATAAATTTCCCTCTACACACTGCTTTG<br>AATGCGTCCCAGAGATTCTGGTATGTGGTGTCTTTGTTCTCGTTGGTTTCAAAGAACATCTTTATTTCTGTCTTCATTTCGTTATGTACCCAGTAGTCAT<br>TCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGCTTTGAGTGAGATTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTT<br>TGTTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTA<br>TATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTC<br>TCGTTGATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTTTAT<br>GAACCTGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCT<br>CTTTTGATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCAACCAA<br>AAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAA<br>GAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCT<br>TGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCC<br>TGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCA<br>GAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATG<br>ACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATT<br>CAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCA<br>GACGACATGATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATG<br>TACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATA<br>CCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAAC<br>ATTCCATGCTCATGGGTAGGAAGAATCAATATTGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGA<br>CTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGG<br>AGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA<br>ACAGAGCCCTCAGAAATAATGCCGCGTATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAAT<br>GGTGCTGGGAAAACTGGCTAGCCATATGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAA<br>TTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGAC<br>TTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCA<br>TCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAAT<br>TTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAACAAACACATGAAG<br>AAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAA<br>ACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATT<br>CCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGATATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGC<br>ACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAT<br>ACACCATGGAATACTATACAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGAAAAAAAAA</u></font>aaaagactagttct<br>tcccaccactgtcacttatcattcaggacttgccaactccctgcaactttctcaaaaagtagtgcataacatttcttctttttgtaataccactaaactt<br>ctcattgttctttggacatactaaagacaagccagtttacagtgtatgccccaaattgtaattcattcttctcaaataaagcattttaattttatggatt<br>tgtccccctattttatttgacttttatagaagcctcaccagaaaccaatcttgatgcacctctatcttgaacttctagattccagaaaataaacgtctgt<br>tgttttgcaaaaaagaaaaaacaagaaaaagaaaaaagaaagaaagaaagaagaagaatattgcccaataa	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	3974	88	NA	intergenic	
0	chr1	199438744	199440233	2000244	0	+	L1AD75; RIP_L1_chr1_196_01	TTTCTCTCCCTCAAGCCTTTT	CCAAAATTCATGCTGGGAAC	LINE	L1	L1HS	aatcttaaattttacagactgtgagacggtcattgtcattgatagtaaattgaagaagagaaactgtcttgggcagtgtcttagtctgttcctgctgcta<br>taacaaaatacctcagactgggtaatttataaggcacagaaaattatttctcacagttctgggggctgggaagtataagatataggcactggcaggttca<br>gtatctagtgagggtctggttactcttccaagatggctgcttgttactgcatcctcacatgacagagggcaaatggacaaaatgagtgatttttctctcc<br>ctcaagccttttataatggcactagttccattcacacgggtagagttctcactacctaatcacttcctaaagtcctgcctctt<font color="green"><u>AAAAATATTGGGTCTCA<br></u></font><font color="red">CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATAT<br>CTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTC<br>TGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGA<br>TGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTGGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCC<br>CATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTT<br>CTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCT<br>ACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAG<br>ATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGCACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGT<br>ATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTT<br>TATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAATAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATTG<br>GGTCTCA</u></font>gttcccagcatgaattttggaggaaaacaaaaattcaaaccaaagcaagaattcatttttgctatgttgaatttaagtcaattgtaagttgtt<br>ctgctgaaaagtataataattattagagcacaagtgaggtcaaagctgcattttattaagcaactattactgagcccttgcatgtgccaagaaaaggtaa<br>gaaactgggtacacagtggtgaaaagacagatatagttcccacccttacagaggttataatttgagataatagtctaggataagcacttgctaattacat<br>ttcaagaatgtgtcaaatgtcacagaaaagtcaaggtaaaaattaagacagagaatagcaccaaatttggcaatattaaagtcttaagtg	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1636	129	NA	intergenic	
0	chr4	164658313	164659132	2000245	0	-	L1AD96; RIP_L1_chr4_165_01	TAATTAGGTAACGCCTGTGG	CAGGAAGCCTAAACTGCTT	LINE	L1	L1HS	ggcatgagggaaacagaagcccgaacccaaaagcactcatctttgttctgccaagtagttcaaatggccccaaagaaggttttggttctttggtggaaac<br>ttccaccataaactgagaaaaaccgatgtttactccaagtgcatgaaatcagattaaaatgtgtcctctacatttttctgttgcccacactaattgaagc<br>caatttgaaaagactctcctctagccccttctgaagcaacaagaataagaactgaaatatgtttgttaggaccagatctacaaggcagcctgccgatttc<br>agaagagcatataaccctaccatgtcctcttcaacgcatccaacatccagaccaccaggaagcctaaactgcttccggaagcaatt<font color="green"><u>GAAAAAAGCTGCGA<br></u></font><font color="red">ATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTAGAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGG<br>TATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCT<br>CCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTC<br>TGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCAAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATAC<br>ACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTGTCGCAAG<br>AACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTG<br>GTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACAT<br>ATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAATTAAAAAAAATAAATAAATAAACTAATATGTGAA<br>AAAAAAAAAAAAAAAAGAAA</font><font color="green"><u>GAAAAAAGCTGCGA</u></font>gcgctgataagtgacttaaataaatgagaatagccacaggcgttacctaattaaaagacacttaga<br>caccaggtctctactttgaggcctggcaaacaaatgagctttcccttacacatttctggctttgctccatcaatcttagttgatggtagaagtttccctc<br>agagatcctgaatgtgttagggccatcataaatttattaggcttttcactttggagtattaagggagaaaactaaaaaatgatatggaatttaaaaagta<br>tgaagacagtatattttatgcaagactttatttttaatgaaaaagcatttctgactcacaggtgtaaaataactatctgttgactgtaatagaataaaaa<br>catacttggtgaatacttta	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	932	98	NA	intron:MARCH1:NM:001166373:3/8	
0	chr5	132918981	132924990	2000246	0	+	L1AD101; RIP_L1_chr5_132_01;AC225583	AGTCTCCCTTTCAGAAGCA;NA	AATGCTGGGAATCTTACCTC;NA	LINE	L1	L1HS	ggcagctctgaccactcactagccatggccatcccatagcgcaggggtgctcatccacctagatgaaaggggcatactctgaaggagccaccacagctca<br>accaatctttagtactcagtgtgcctgggggtgcctgacacttccacctctaaggaggaggctgtccctccatggcagcacctccagcagaagtacatga<br>gcttgcctctggcctcatctcagcagcagccctgctgctgtctccagcggccagtggaagagtcagcaaacaccagcacattcccactgggtttcctgac<br>cctccaaaagcccttcacagtaaccacagttggtatcacagtaaccaacttggctgccaatgctgggaatcttacctcctcctt<font color="green"><u>AAGATCAAGGCCCCAG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGC<br>GCAAGGGGCCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACC<br>GGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGAT<br>CAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGC<br>CCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAG<br>TGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCC<br>CTGACCCCCGAGCAGCCTAACTGGGAGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAA<br>CTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGA<br>ACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTT<br>TGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAAT<br>TTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAA<br>GCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAAT<br>AAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACC<br>AAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAA<br>GATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGGAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCG<br>GGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAA<br>GAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATT<br>TTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACCTGGAAAGGAACAACCAGTACCAGCCGCTGCAAAATCATGCCAAAATGTA<br>AAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACT<br>TTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATC<br>TCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTC<br>TGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTA<br>AACATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACT<br>TTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGA<br>CATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCT<br>CTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCC<br>GCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGACAGAAATAAAGATGTTCTTTGAAACCAACGAGAA<br>CAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCC<br>AAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGTAAACACATTCAAAAGCTAGCAGAAGGCAAGACATAACTAAAATCAGAGCAG<br>AACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAG<br>ACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGA<br>GAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAG<br>TTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGA<br>ATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCC<br>AGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCGAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAA<br>TACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATATGCAAATC<br>AATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTC<br>ATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGC<br>AAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAACACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAAT<br>CAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATT<br>GTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACA<br>ACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGACAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGA<br>CCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATC<br>GTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAA<br>AGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTA<br>CAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTAC<br>AACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAA<br>AGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATCCAAGGTGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGA<br>AAACCTAGGCATTACCTTTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGAT<br>CTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCAACAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACGCATCTG<br>ACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACA<br>CTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATAT<br>CATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGG<br>ACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAT<br>ATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAA<br>TGTCCAACAATGATAGACTGGATTAAAAAATGTGGCACATATACACCATGGAATACTATATAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGAC<br>ATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGA<br>TCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATG<br>ACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGATCAAGGCCCCAG</u></font>aaccttgcttctgaaagggagactgctgtggtcaacccttaggaacttcccaaggccaattcttaaaagcagaaa<br>cagagaccaccaaatatcacacacttagtcctccacccacagacactgccctcactgtcccatgtgagggcagtagctgccaagtccccagtggaatcct<br>ggaagaagtgcaaggaaatagccaaaggaatgttaatatgttaattctcagaggttcagtggctgcctgatggtgaaagaagagaaattgttggggagga<br>gggggaataggggcagaactcatctctccccacagaaggtcaagaggccacccaccgcccagccccagaagaccacctcaaactctgctgccctccagga<br>ggaggggat	UCSC;UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	55;NA	6091;NA	66;NA	NA;NA	intron:FSTL4:NM:015082:2/16;intron:FSTL4:NM:015082:2/16	
0	chr5	132934099	132934100	2000247	0	+	L1AD102; RIP_L1_chr5_132_02	GAATGGGGTGTGCTGTAA	TTTTAACAAGATCCCAGACC	LINE	L1	L1HS	ctgcttgaaaacaggtgcaaatgaccctagaaccaaggttgtttaagttcatctttcccatcacctacctgcccactaagctagtctcatcaagctattt<br>tccagcatgactgcagcctgcccatttctctcctttccctgactgtagtcagcatcatgtcagcaagaactaaaaaaaggccagagtcaatccaactggg<br>attctccttgtgtgtgtgcatgggaggaggcagggggctcctctaaggcttttctgcccagtgtcccccaggatctgaagtatcagcatcacctggagct<br>cagaatcttgggacccacctcagatttgctgcattagaatctgcattttaacaagatcccagaccgttcacaagcacattgcatctc<font color="green"><u>AAGAGGTGCTGGC<br></u></font><font color="red">CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAACAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGACAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTATAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGCTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGACAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCCTGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTATAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAGACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACGCCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGCGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGGTGCTGGC</u></font>acaggttacagcacaccccattctgcaattgggaatgggttcatcccaatgcccctg<br>agaccttgggaggttctgccaccatcatttgccttgaaaattataaatgtactgataacgtctataggtgggaggttgtgccctcccagttgtacctgaa<br>aaatgaatatccacatcctctgactcagaataatcagcagaaagccctggctaagtgttaggggcccagagaagtggcccccacgtcaaccagcacagca<br>cctgcagaggaagttctggatccttttgaaaggagtacgtggttcggttatcccagggctccacggccctggggagaccattctcgcctcttgctgagag<br>accttgcccagggtctcatcttctttgaaa	Other	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	3721	78	NA	intron:FSTL4:NM:015082:2/16	
0	chr18	47911014	47911274	2000248	0	+	L1AD125; RIP_L1_chr18_046_01	AAACGGTGAAGGAAATGTTG	GACATGAGCAACCATCAGGA	LINE	L1	L1HS	ataacaggtataagaaatattacaggtatttcttatacttgttattatgtgtagttatagcagccccctactgtttcttatatctggtgtcgtctttcct<br>atgtcttgacttgctgctggcaacatccctggcagttaaggaacctagaagctatagtgtgtttctagactttgttgctagtgggacaggagctatatta<br>gtcggcttctcactcgctgtaaaaattgggcagattgaatccaggggtgacccatgatcattgctggcaactaaaatgactccgcaatacacagggactg<br>acatgagcaaccatcaggataaattagaataaatagaagtctaagataactgatgtttccagattcagagttagggacgtcagg<font color="green"><u>AAGACAAGCTGTTAAG<br></u></font><font color="red">GGGTTAGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAA</font><font color="green"><u>AAGAGAAGCTATTAAG</u></font>ccgtaaagctgttaacttactga<br>ctttgaggagctggtgggacaactgatgaagatatcatgttacacgtaaataaatgtagctatattactgaagatttgggaacttaatttttcaacattt<br>ccttcaccgtttaatgttcatgaacaatagacatagggatagaaaaaaatgttggcaataagattataacaggatgagttacgtatttaatattattttc<br>agttgggaaaactgtcagtatgctgcttatttctgaaaattgcctgtatgtatgtacatctgtattctgtagtgttaagggatcagatcttgatcctgaa<br>gaaccaatcaaagttgaagaacctgaacccgtaaagaagcctcccaaagagcaaagaagta	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	513	236	NA	intron:SKA1:NM:145060:4/7	
0	chr3	7347034	7347322	2000249	0	-	L1AD160;L1AD176;2363; RIP_L1_chr3_007_01	AGAGCTACATGGCTAAATGC	TCTGCAGTTTTAACACCTCTT	LINE	L1	L1HS	attaaaataaacagaactccatgtgaaacatgaaaaatttataacttgtgtatgattgaaagtattatatatacataatcaggacaatgggagcaaataa<br>aagaaaaaagggaactagctattaatgaaaaagttattgcaatagtacttttggaagaggggattgatgagatgtaactgcattggtagatcagaaaaag<br>ctacaactgaagcccctttggtgggtaagaccacaggataagtggtttgtttgtctcttgggacttgggagtatcaggcaccacagagctacatggctaa<br>atgcaggaagattgggtcaaagattgtgaataagctgacaaaggccagttctacttttttttcttccaggcaggaaatgacagttttct<font color="green"><u>AAAGAAAAAAA<br></u></font><font color="red">TCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGG<br>GAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCG<br>CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTATCCTAAAACTTAAAGTATAATTAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAAAA<br></u></font>aaaaagcagcagcataggaaataggttctgatattgtaaacaccaaaatagtaaaaggtggataagagatggtaacaaaaaaacaccaaaatagtaaaag<br>gtagataagaggtgttaaaactgcagatggggatgggagggaatgactaaaagtcagtataatagaaattgaaatgttaagacactctaggaattttaaa<br>cttctgctcacaaaatgctgggaactaggggtttgtcaccccaggtagaaaataatttttctgtaaaaatctgatacatatcagaaagtagactctagat<br>attgttataaagaagtcctctgatggaatggccaatctgattccctgggaaccccatcagttgtcatgcactgcccgtgggcacagagc	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	543	238	NA	intron:GRM7:NM:000844:3/10	
0	chr3	134673917	134674555	2000250	0	-	17693;L1AD186; RIP_L1_chr3_136_01	ACTTGAAATTGGGGTAGATG	ATTTTCTAGAGGGCTCCTTG	LINE	L1	L1HS	tctaacagccccagcctcctccccttcctccctgcagtccaacttcagctaaagcaatattttaggctacacagtagagagagagagagagtctgctgag<br>agccaactcggcctccctggcacaggaagagccaggctgcatgggacctacacagagaatagacttagccaccaacctcagcagggaagaggggagaagg<br>gaagacaaagctatgatttctcattaatcctctacactatgagcataacttgaaattggggtagatggggcattttcctagtaattaacaattttataaa<br>gacaaatgcatgatgaggtcagagtcactagtgagatgaggtcagcaggccaatgtgactctgcctgatgggaccagcctgtgtgt<font color="green"><u>AAAGAAAGGATGTC<br></u></font><font color="red">CCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAAT<br>GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAAATGT<br>CCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACAT<br>GGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATC<br>ACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGAC<br>ACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATTAAAAA<br>AAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAGGATGTC</u></font>aggaacaggccttaggccaaggagccctctagaaaatgcatgagccg<br>cttgccacacatcctaatgcgcaagttctccccatagcttcctctactcccctctcacctgttctcttctcaccacccacgctcttcacaacagaaacag<br>ctctaggccaggaccactctttgctggctgtgctgtctaattggtctccaggtgcctctgcacagccaagcgactggtcaccacgactttgacaggagac<br>ggtttcacagaagcaaagtgaaagccaagaaaatacagttccctggccataatgaaagtctgttctgtttccatgcaggaaaaatagcatggaaccagaa<br>gcggagagattattctttctgccaccctacaaagtccca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	843	190	NA	intron:EPHB1:NM:004441:3/16	
0	chr14	81469128	81469427	2000251	0	-	2035;L1AD213; RIP_L1_chr14_080_01	GCCATAAACAGAAAACCATT	GTTGCAGAAATAACAGCACA	LINE	L1	L1HS	aaacagcgtgcaccattctgacattacaatgggggaattggtagtgcccaggtcaagtggtggggctggacacaggaggcaaataggaaatgtagtctga<br>agcacaaggaagaggtcagggctaatgataaaatgtggcagtcattattatccaggtgatagctgacactttaaattggatgagatttttctaaggagca<br>tgtgtactgtacaaaaaggacaaaggatgaaacacctggggaggtcaacctttaatgagcgagtcaccggagcagtagaatgaaaatgaagtagaaggag<br>aactgagtctatttgtcacagaaatattatatgttgcagaaataacagcacaaaagaaactaaacagcagtcttttaaactggcagtt<font color="green"><u>AAGAGGCATTAG<br></u></font><font color="red">CAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGG<br>GGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAA<br>CCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATAAAAAAAGAAAAAAAAAAAAAAGATAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAGGCATTAG</u></font>ggaccttaatgagagaaattaccatggagttgagaaataggatagcaaaccagatttcagccagttgaagagtagtcaatggtaacta<br>atgacaaatggttttctgtttatggcatgagtggaagaaaatggatagagggttaactatggagggaatagggcgaagagcagggattttataattggga<br>cattaggtaatatttttgggtagagtgaaggattaaggttgatgataatagcaaacctatagtgcttactatgtgctagagattactgtaagcactttac<br>atagattaactcaattaaatcttcacaacaacattgagataggtaatactattatccctattttacaaatggggaaactgaagcacagacgggttaagta<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	494	182	NA	intron:TSHR:NM:000369:1/10	
0	chr7	93416942	93422991	2000252	0	-	238587;L1AD219; RIP_L1_chr7_093_01;AC207446	AGGGAATATTTGGGACATCT;NA	CCCCACCACACTAGAAACTA;NA	LINE	L1	L1HS	tactttcaatggcaaaaaacaaaattacatttacaccaatctaataaaaagatcagtcgctgccaggggttaagggaaaataacagaggatttttaggac<br>atcgaaaatactctgtataatactataacggtggagatataagttgtccaaactcatagaatgtacaactccaagagtgaaacctaatataaattataca<br>gtttgtgtgataatgatgtggttcatcaattgtaacaaatgtacactatgatgggggatgttgataatgcatcagaggaggcagggaatatttgggacat<br>ctctataccttcctcttaattttactgagaacctaaaactgctctaaaaattagtcttaaaaatcaatcccatctatctttaattc<font color="green"><u>AAGAATGATGATTA<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGTCGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>GCCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCTCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGGCCGGCTTAAGAAACGGCGCACCACGAGACGATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATGTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACAAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTACGTAAACAAAGCAGCCGGGAAGCTCCAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGAACCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAGGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGAAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATGGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAACAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATGCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACTGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTACACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACCGTCTGATCTTTGACAAACTTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAGTTTGCAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGTACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCACATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAAGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTTCC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGATGATTA</u></font>aattggaatgtattatattgtgagagacacatggag<br>gaaccatattattcatctcatcctatctagctatctatttatctggtgtatatagttaatatatctattgtgtattaataaatgtatagtttgtattata<br>tataacatatagtatatatatttattatgtatgttagtatatggtagacattttccatacatatgtaatttgactatatatagtttctagtgtggtgggg<br>actgtggggggcagtaagatacgtggttattgctcacaaggagcttataggtaatcaaggagctggagataggcataaatgaccataatatctatagaaa<br>gaacgttatgtataaggtatgcaaataaaataatgtggagataagaatca	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6418;NA	354;NA	NA;NA	intergenic;intergenic	
0	chr1	238852318	238853250	2000253	0	+	L1AD232; RIP_L1_chr1_235_01	TCCCAGAACTACCTCATAACA	GAGGAAGACAGTGTCACAGA	LINE	L1	L1HS	gagctttcaagtcacagaactctggagaagaggaagatcgctgcatggatcaaggtataagaatgtcaatatttttattaatgtggattaaataattaca<br>ttgaagatgcattttaatgggcaacacaaataacttttatatgttccattaaatacattattcaacttctgaaacagtgattgctgtcaatatcactttc<br>tattttgaaatattggcatgccaactttaaatgtgcctattttgtatattcccagaactacctcataacattctatggatatttacatctcttatattgg<br>gaaaaataaactaatttacattcttatatgttatattccgccgttctatctgttatattttatattctgcctatatatgctttttatatt<font color="green"><u>AAAAAAACTA<br></u></font><font color="red">GTTTTTTTTTTTTTTTTTTTTAGAGGGTGTTTCTTTTTTTTTTTTTTTTTAATGTTTTTTTTTTTGTTATCATACTCTAAGTTTTAGGGTACATGTGCAC<br>ATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCT<br>CCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGGGCTAATAT<br>CCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGA<br>CATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTT<br>AGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTC<br>AACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTA<br>TAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATA<br>GACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGG<br>AAACCATCATTCTCAGTAAACTATCGCAAGAAC</font><font color="green"><u>AAAAAAACTA</u></font>cttttacaaaactgatacagttagtggtcaagtaaaatcaaatatagctctgtgaca<br>ctgtcttcctcacaactttcttttctcctgaaaaatttcattgagcatataaaagtatttttaaacactcagatttttagtttttcatatttctgcaaag<br>gagaacatttctgctggtgataaatagatcttaggtggaatctctctatgagatctgctgcaggttaagcatctctggatttcctccacaaaagtgatga<br>gagaaacaacaaagagaatcagggatagaagagagtggctactgatcactgcccttaaccttctttttcccctagaacataaacaaacactcatattatt<br>cttcaattagttgcaatgacactaagaggtaat	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1162	219	NA	intergenic	
0	chr14	40098410	40100213	2000254	0	-	52553;L1AD251; RIP_L1_chr14_039_01	CTGTGGAGGAAACATTGAAG	TCACACTCAAAGACTCCTTTC	LINE	L1	L1HS	aggcagttttaggcaaaagttaatactatatttttaaaaattagggtacaaaagcatgtgcaaattttacaaattaataaattatatatgttagtacaca<br>catgtatacatgaacatgtgtacatacaaacatatacaaaggatggaataaaaagcaattctctctggttattggaattataagtgattttattctaaat<br>attctctaaaataaatccaataaaaaatagttattttttatttattaaaaaaaaaatctataccttaacagtgacctaaaataaaattctgagagctgga<br>aaaggttttcagttttcattaccagatttcatttttaaagtaggttaaactcataataaaatcacactcaaagactcctttc<font color="green"><u>AAGTTATTTCAGGACTCT<br></u></font><font color="red">TTTTTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTG<br>TTTATCTGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGT<br>GCTGCTGGATTCTGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCC<br>CGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGT<br>TCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTG<br>TTATTGGTCTATTCAGAGATTCAATTTCTTCCTGGTTTAGTCTTGGGAGAGTGTATGTGTCGAGGAATGTATCCATTTCTTCTAGATTTTCTAGTTTATT<br>TGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGTGTCTATTTGATTC<br>TTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCAAATGGGATCTAATTAAACTAGAGAGCT<br>TCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAG<br>AATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATT<br>TATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAA<br>TGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGAAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACC<br>ATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAA<br>TCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACT<br>GGATTAAGAAAATGTGGCACATATACACCATGGAATACTATACAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAAC<br>CATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAG<br>GGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGAAAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAG<br>CGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTATCCTAAAACTTAGAGTATAATAAAAAAATAATAATAATAAAAA<br>AAAA</font><font color="green"><u>AAGTTATTTCAGGACTCT</u></font>gtctgctttgttgaaattgaatttatttatgttaatatgtaaatgtgccattcaattgttccaaagcataatctagat<br>ctaagatttttcaaagccattggctaggttgcatatcttcaatgtttcctccacagcattttgaacatagcaaacactcaatgaatacacaccacataag<br>ctgtgttggtagtttggccccaagtcatcatgtcccttggtttattaaaagcatacccactcctcaacactttgttccatgagccctttaagcaacctct<br>gttagagacagtgaaattcataaaaatagcatctgattgtgtattctgagaaaaactggacattagctaagaatggtgttgcataaaaattttcctatgg<br>tgtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1995	172	NA	intergenic	
0	chr14	83635854	83636483	2000255	0	-	238908;L1AD253; RIP_L1_chr14_082_01	TTGCCTAGCTTTTCTACCAG	TTCAAGCTACCTTCTCAAGC	LINE	L1	L1HS	acaggtgcccaccaccacgtttggctaaattttaagatatttttagtagagacagggtttcaccatgttggccaggctgttcttgaactcctgacctcag<br>gtgattcacctacctcagcctcccaaagtgctgggattacaggcattagtcattgtgcctggccttgtatacatatttcaaaacatcatgttgtacgaaa<br>aggccctgcctaggtaataaggctggtgtggagcggacattacaaacagaaggaaaagaaaaagacaaaggcatgcaggcatgaattagctgggtaaatg<br>caaaggaacttcaaagaattcacactaaggataagctaacaacatggtgcttagtaaggccatagacttaggcattggcctgg<font color="green"><u>AAATAAAGGTCTTTGGA<br></u></font><font color="red">ACACCACATACCAGAATCTCTTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAT<br>ATACCCAAAGGACTATAAATCATGCTGCTCTAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAA<br>TGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGA<br>CATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAG<br>ATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGCGGAGGGATAGCATTGGGAGATATACCTAATGCTAGAT<br>GACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAA<br>AAAAAAAAAAAATTTAAAAAAAAAAAAAAT</font><font color="green"><u>AAATAAAGGTCTTTGGA</u></font>gcttgagaaggtagcttgaagcttatcttgtatgtaaaacactgaagagcctt<br>tggtgtggtctgatttgaatttaagaataatttacatagaaatacagaggatggaaaaaataaagctgcacagctggaaacttgcaattatttacataaa<br>atcatcatcactaatatttccataacattaagtatatgccaggcaatttctaggtgatttacaagatttactaatttacaagaggaggatatgaaacaga<br>tatgtacatatgtaaatgaaaacatgtttcccatatcatatggtaatattagagaaattctaccagtagataatgttgcctcccaagagaataatgaatg<br>gggcacattaccgtgataaaagcaaccaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1369	726	NA	intergenic	
0	chr14	29728050	29728802	2000256	0	+	L1AD255; RIP_L1_chr14_028_01	TCATTGTTCTATCCATGCCTTTT	GTAGGTTTGGGGCTGGAAAT	LINE	L1	L1PA3	agatataccattttcattgcatcatgtcatggcacatactgtcaacacgatttatcactgttgatgtttaccttgatcatcaactgaggcagtagttgtc<br>aaatttctccactgtaaggcagctacttttattcctttctatactatatatttttttgagagtccctacgcatagccctcactttaaaactagagaattg<br>tgctcctatcgtcttgagagtaaagcagctacacaaattatttggtattcttctgcaaggaagatttgtttttgttccaccatttctttacttattcaat<br>aagtgaagatttatgcatatttattttatattttggttaaaattcaatgctactttatttctttgctcattgttctatccatgcctttt<font color="green"><u>GAGAATTCTTT<br></u></font><font color="red">TTTTTTTTTTTTGTTTTGCAACTAATATTGATTTCTTTTTTATTTTTATTTTTATTTTTATTTTTTTTTTAATTTTTTTTTTTTATTATACTCTAAGTTT<br>TAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACGTGTCATCTAGCATTAGGTATATC<br>TCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCAC<br>CTATGAGACATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACA<br>CTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCA<br>TTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGA<br>ACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTC<br>CTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGC</font><font color="green"><u>GAGAATTCTTT</u></font>ccattggatcctgtgtctctttgacagacccccacc<br>agtgtgtatttatgtatgtatgtatgtgtttgtttgtgtgtatgtgtgtatatgtttaaccctttcatgcttttggtgctatgagattatccaggtgcat<br>cgtacatatttccagccccaaacctacaattagtcatttatctatggaactctgattccttctagtggaaaattgtattagtaattaagatctgggtact<br>cagtgtacacttgtccaatgaaatgtcatttttaggcactctcagctgacagaacaaagaaatatatctgtgaattctaatccatgtatatacagatatc<br>tataaacattatcacctgtacctatattaagctaaacttatactgatgtctcc	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	55	961	197	NA	intergenic	
0	chr20	42024613	42025792	2000257	0	-	L1AD264;31073; RIP_L1_chr20_041_01	GGGGAAGTTCCTCCTATATT	AAATGGTAGGTTGGTTTATCA	LINE	L1	L1HS	atttgatctgatgaaaactgagatctttttttaaaagaaagtcttttgtttttttggggggggggaagacaaaactacattttaaaaatggtaggttggt<br>ttatcaacaaatctctatttaagaaattgaatatggaactgattatacagctggcaaaaccctcactatttcgacacattctgagatggtctaatttagt<br>gaaaggtctggatcagttggaagccaatgattttggagctctgactggcttcattacctttgactcagaggaagccgagaaactgattccttcagtgacc<br>tccagagtcaagagaaacttatcccaatgagctgataaagacagtttcttaacatatatatatttattcatttttcttttat<font color="green"><u>AGAAATGGGGTTTTACCA<br></u></font><font color="red">ATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCA<br>AAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAA<br>CAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAA<br>AAAACAAACAACCCCATCAAAAAGTGGACGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCAT<br>CATCACTGGCCATCAGAGAAATGCAAACCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGACAATCATTAAAAAGTCAGGAAACAACAGGTG<br>CTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGAT<br>CTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGT<br>TTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGA<br>ATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAA<br>ACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTC<br>GGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACT<br>AACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAACATTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGGGGTTTTACCA</u></font>tg<br>ttgcccaggctggtcttgaactccggtgctcaagtgatcttcttgcctcagcctcccaatgctgggattacagatgtgagccaccacgcccagcccaaag<br>agagtttctaattagcagatcaatttcaaaatattaacgacttcttaagtttttctctgtttgtaatataggaggaacttccccatcggtggcctggtcc<br>ctttggtgtttgcacagttgaggaaagagtcttaaccctgccccacaaaacccatggtcaccaccacacatatgatatactgatgtggaaactgaggctc<br>agggggagggagtgccttgctcaaggtttcaaggctgaactgtggctggaacacatctccttatgactcccagtccagtg	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	1699	501	NA	intergenic	
0	chr10	29712155	29712718	2000258	0	-	L1AD290;3429; RIP_L1_chr10_029_01	CCATGCCTCAACATCTCA	ACCTTCCTTATCTTCCCTTG	LINE	L1	L1HS	gtgagatagtgtttgttgtttcaaacgacgatttaagttttgaagtaatttgtatgcagaaatagataactattacaaagtccatgcataaaagttctta<br>agtcatgttatagttgttgaaaccaaggtatcaaaagaccaaatgtattttccatagtcaaccagggaagcagtgacaaaacaagaaatggagtttagat<br>gccagttgattcccagacttattctctcctatataaaggttaatgacattttgcatgaaataatgctagtagaacccacgaggttgttagccatgctacc<br>ttccttatcttcccttgactttctttttaaatctctttatagagtaaccgttgagcactgagccttttccccagaaatattattttttt<font color="green"><u>AACAATGCATC<br></u></font><font color="red">CCTGTCTTGTGCCAGTTTTCAATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCATATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAATGCAAC</u></font>tttgtcttttctaaaacaaagagat<br>tccaggcattcagtgtgcattctaaaaagtgagatgttgaggcatgggaggaaagtgactttcaaataagcacataatgatcaagtaatcttctctctac<br>ctttcatgctgagaacagtcacaaatatttcattcctgagaatcttgttcccaaattgacaatgcttcaataagcacctttttgtactttcttcttaatc<br>aagtagaaagaaaaaacatcataaatacaagaggggtattttcccttctactcaaagtgtgtagccaggagccccagcattctttccacagagagatagt<br>atggttctaaactatcacttaggcgactgagcacagtatttggatagaaggatgctttgtatca	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	750	175	NA	intergenic	
0	chr6	51739582	51745600	2000259	0	+	L1AD310;237948; RIP_L1_chr6_051_01;AC226759	CAACACACGTACAGGTATGC;NA	TTAGCCTCTGTCTTTTGTGC;NA	LINE	L1	L1HS	cacatgtctttcttgtatatttaagtcattcgtactgaaaattattctattcatctcaatacaaaggtaacattggctgtgagagtaccaacacacgtac<br>aggtatgcttaaaggaaaaaaattccttctgatgataaaaagttcttccagaaagtaatgtttattttaggatgtgactcacagataattgtatgccacc<br>aattatatatgagtggaaagtctaacaatggacaggccaaattctttaaaagtcttaattcctggccaggcgcagtggctcacgcctgtaatcccagcac<br>tatgggaggccaaggcgggcggatcacgaggtcaggagattgagaccatcctggctaacatgttgaaactccgtctgtact<font color="green"><u>AAAAACACAAAAAATGAGC<br></u></font><font color="red">TCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGT<br>GGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGA<br>GTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCAAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACT<br>ATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACGGCAAGGCGGCAACGAGGCTGTG<br>GGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGC<br>CTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAG<br>CAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGG<br>CACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGA<br>AAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTG<br>GAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAG<br>AGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGT<br>ATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCC<br>GATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGA<br>GCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAAC<br>ACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGA<br>GAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAA<br>AGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTT<br>CAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCA<br>GGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAG<br>ACTAGGAGGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAAT<br>GGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAG<br>ACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGA<br>CTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTGAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCA<br>CCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCAC<br>TGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCAACAGAAC<br>TCTCCACCCCAAATCAACAGAGTATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAA<br>TGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTCCAT<br>GGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACAAGAACAAAGACACCAC<br>ATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACC<br>CTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACGAAAATCAGAGCAGAACTGAAGGAAA<br>TAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAA<br>AAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAA<br>CACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGA<br>ATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAG<br>GTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTG<br>ATACCAAAGCCGGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACC<br>GAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAAT<br>CCAGCATATAAACATAGCCAAAGACAAAAACCACATGATTATCTCAATAGACGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACT<br>CAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCA<br>TTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGG<br>AAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAA<br>TCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAAAAACAGACAAACAGAG<br>AGCCAACTCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGA<br>ACTACAAACCACTGCTCAACGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCAT<br>ACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCTTCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAAC<br>CAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAA<br>CCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTT<br>TGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAGGCTGAAACTGGAT<br>CCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTA<br>CCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAA<br>GAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGTCTAATA<br>TCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAG<br>ACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGT<br>TAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTT<br>CAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACT<br>ATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGAT<br>AGACTGGATTAAGCAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTG<br>GAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACA<br>GGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGG<br>TGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATTAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACACAAAAAATTAGC</u></font>caggcgtggtggcaggtgcctgtggtcccagctactcaggaggctgaggcaggagaatggcg<br>tgaacccgggaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaagaaa<br>gtgttaattcctaaaggaatggcaggcacaaaagacagaggctaaaatcagagtcccataaccacagaggtcaggaaccctctttttctttctttttttt<br>tttttttttctttttttggaacaactgacacctggcaacatagtggttcccaaataaatctgaaaaatactgtgctaagtaaagattaatagattttttt<br>ttgcttgttcactttaatg	UCSC;UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	60;NA	6557;NA	519;NA	NA;NA	intron:PKHD1:NM:138694:46/67;intron:PKHD1:NM:138694:46/67	
0	chr1	184814744	184820784	2000260	0	+	238548;L1AD312; RIP_L1_chr1_181_01;AC225572	TTGGGGATAACTTTAACTGC;NA	CCTTTTCATCCTCATGTTTT;NA	LINE	L1	L1HS	ttaacagagctttacacttagggtaaataggtgatttcattgtgaaaacgctaagcatttacaattattttcagtaaagttcaaggagcatcttgtttaa<br>taacttggctaacaacaagcttaaacaaaataagatgggattactgaatggaatattatgcagtcactaaaataatatttttttcttttccacaaattaa<br>aataacaattatgatgacattatgaaaaagtagtttggggataactttaactgcaaaaagcagattataggccaagtatgatggttcatgcctgtaattt<br>taatactttgggaggccaaggaggattgcttgaggccaggagttcaagactagcttgggcaacatagtgagacccccgtctctac<font color="green"><u>AAAAATTTTAAAAAG<br></u></font><font color="red">GGAATGTGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGATCCCAGCGTAAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCAGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCACCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGCGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCTGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAGGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTAGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACATTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAATGCCACAAAGACACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>CAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGGTCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGTGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAAAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGTAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTC<br>TCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACA<br>TTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGAA<br>AGGCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCC<br>TTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTAATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCA<br>CAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGT<br>GTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATATTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCCGCATGTCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTCACAACCTAGTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACAATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAATTAAAAAA</font><font color="green"><u>AAAAATTTTAAAAAG</u></font>aaccagattatacattacatatatatcctgattaagtaatgcaa<br>aacatgaggatgaaaagggaatgcataagaaataaaaggtgagttatgggggattttgtacttgtggctcaaagtttatgaaatgttacactgttaatta<br>tccttaggaatatacaggctgatctaacgactttttttttttttttaactaatcctcttatgaccatggttgatatttgcctttccagagtcaaaatggt<br>cctgggcagtttgcctcttagaatctcagagagctcccgtgagcgctggcagcttccaaagcccagcacgcgccacagtcccaccacgcggggtccaatc<br>caaggtgtttgtaaagaacttcggtgagcagagactcacat	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	55;NA	6284;NA	228;NA	NA;NA	intron:FAM129A:NM:052966:5/14;intron:FAM129A:NM:052966:5/14	
0	chr1	91914107	91914550	2000261	0	+	L1AD318; RIP_L1_chr1_091_01	TGTGGCTAATTCTGAGACCT	ACATGAGTTATCGTGGCATC	LINE	L1	L1HS	tcatggggtgggggactgggggccagatagcattaggagaaatacctaatgtaaatggcgagttgatgggtgcagcaaaccaacatggcacgttgtgcac<br>atgtaccctagaacttaaagtatttttttaaaataccatttttaaaaaataaaaattccttggaattcataaagtattaaaattctctaacaaatacttt<br>ttatttaattttcttttcctttatattcattgaacttgcaattattctgggcctaagtattaattctgtggctaattctgagacctcagattcctattcc<br>tctcttaagtacaacttgcctttaggttatttctctgctcactagtaccttgaccatgggatgaacaaggaaaacaagaactccattttt<font color="green"><u>TTAAAAAAAA<br></u></font><font color="red">TGTTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGC<br>CATTAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGC<br>ATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGG<br>AGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAAT<br>GTGCACATGTACCCTAAAACTCAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>TTAAAAAAAA</u></font>aagttcgtgaaatataaatgcctgatgccacgataactcatgtcct<br>ttatttggagagaaagtagatagaaaataattaaatatgagtaattcaggcacagctttttgtagcaagtccacaggcatcgcagggctgagccaagtcc<br>tgcttttaaaaagcagatatatcagatctgtccagatccttggaacttctctccattcatatttgtgagcacaagaacttactgacctttgttgctttcc<br>atgatcattcccttttgtgaacccagaaagttggcaccacaggtacacagatgatgtacatcttcctataaaaccttaattttattatatatttttctgc<br>ttgcattacttcataaaaagaagatgcaaagttaagtgtatcct	UCSC	<UL><LI>Salem AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA. LINE-1 preTa elements in the human genome. J Mol Biol. 2003 Feb 28;326(4):1127-46.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12589758">PMID:12589758</a>.</LI></UL>	C:Reference; E:Insertion-specific detection:PCR	NA	60	631	176	NA	intergenic	
0	chr17	58587422	58587423	2000262	0	+	LID2; RIP_L1_chr17_055_01	AGGAAGTCTTGTAAATGTATCC	GCCTTCAGATGAGTTTTGAGATCAGAGC	LINE	L1	L1HS	gcgtggtggcacatgcctgtaatcgcagctacccggggggctgaggcagaattgcttgaacccaggaggtggaggctgcggtgagctgagattgcaccat<br>tgcactccagcctgggcaacaacagtgaaactccatctcaaaaaacacaaaaaacaacaacaaagaaatcatctgatgtctagatttgcttccaaatatc<br>acatgaaaggggaaagtgaatgggagaacagattcagtaacaagactggccagaatcgataattgttaaagctaggtgatagacataggaattcattatt<br>ctattctatttctgtatgtatttaactttttaaaaaaggaagtcttgtaaatgtatcctttacctctaacataaaagaatatgtttcatttaacaaacat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>gagttatcgtcacttacatgattcatttattattatgctctgatctcaaaactcatctgaaggctggcacagtggctcac<br>acctgtaatcccagcaatttggcaagccgagacaagaggattgcttgagaccaggagtttgagaccagccggggcaatgtagcaagacccccaactccac<br>aaaaaataaaaaattagccagacgtggtagtacatatctgtagtctgaactacttgggtggctgaggtggaaggatcacttgagccctgaaggtcaaggc<br>tgcagtgagtcatgattataccactggactccagcctggacaacacagcaaaatcctgcctcaaaacaaataattttaaaaagtaaaaaactcatctgat<br>gttgggcgtggtgggtcaca	Other	<UL><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	59	120	300	NA	intron:APPBP2:NM:006380:1/13	
0	chr5	8749504	8749505	2000263	0	+	LID5; RIP_L1_chr5_008_02	AGGCCATGAAAACACTGAGCTTGGC	AGCCAGCGAATAGCAGGTGAAAAACAC	LINE	L1	L1HS	actatatatcatggaccctgatttatatataaaaattcatcatgacaactttataaaatgcatctcgactaaacagctaacattctgaattctgctttat<br>gcagtgtgtttgggtcatacatagaggccgtgaaaacactgagcttggcttaaatacactggtttctcttatctacgttaccatcagtttaaagtaaaat<br>ttggaagaaaaaatatattgaagaataatataagtaggcactcaaacaatgtgccacacacttccatcttaaaacaaagttaatatgtagaatggcacag<br>gcttcagacattttcatattatctggtaacacttttctttaactacagcatttaaaatatataggcaggttaatataagaaatatcattccaaagagtaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>attttctctttaaaattttttaatgaatccatttcaaaaattttaaatcaattatctttttcattacataaactcaggca<br>tgtatgaacatattttttagtggaagtagtcaaataattttgatttgaagccttttaaggcttaggaatgtcaagacagacatcaaatatttaacagatc<br>catgatgcaaaagcaatttcagaggcttttgaaatagacttttggccttatgctgaatcatcccatactgaggtgctctttgagttattacatttgccct<br>tcatgtttgtgtttttcacctgctattcgctggtatttcttgacaccacatgcgttcctccctagaggattcttttcagtgttgtgtggtgcctgccctg<br>gtttgagcaggtgcatagcc	Other	<UL><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	59	600	470	NA	intergenic	
0	chr17	15511194	15511195	2000264	0	+	LID6; RIP_L1_chr17_015_01	CGTTCTGGTATGCAGTCCAC	CCCTGAGTGTGCTTTGTACT	LINE	L1	L1HS	cctttccatgtacacaaaggtcagggaaatcccaaatgtcagtgtggataactcaagcgtccctagagacccagattctgaccccagtacctacgtgtca<br>gagagaatgcgaacattgtaggtcccacagaaaacatttctctcctccatcaggacctgctgcgtttcctcgttctggtatgcagtccacaggttgtact<br>cattctaacaagggaatatttgaagttaaagctcagtggtaacttcaaatacccacagtcccagagcccctagggtctccctggtaagggcacagggctc<br>acagattcttcctctgaaggctgaggctgctgctctgcagagaagggagcagccagtgagcaagcaccaaaggaaaccatgagttagaaaatgttgggtc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>aaggttcttaattcttctttcatctctttgattttccatgtgccctgattccatgaactttcaaggctgaattccaaatg<br>tcaccaataacacaactttttcaaaaatcagctcacaaagggtatcctcacaacataaagtcacaggtgccctttgaccgaccatttcacagaagtcgga<br>acgtcatatgtatattacatctacctgatagtacaaagcacactcaggggattttaagccaactgtgaaattactgctacacatgctatgctatgcattt<br>gcatttttttttttttttttcagacggagtctcgctctgtcaccaggctggagtgtagtggtgcaatctcagctcactgcaacctccgccctcctgggtt<br>caagtgattctcctgcctca	Other	<UL><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	59	505	350	NA	intron:CDRT1:NM:006382:5/12	
0	chr4	80768677	80768678	2000265	0	+	LID4; RIP_L1_chr4_081_01	CGAATTCAGGAGGCAGAG	TAACGCCACTCTTTAAGCAG	LINE	L1	L1HS	aggctgaggcaggtgtatcacctgaggtcagaagttcaagaccagcttggccaatatggtgaaaccccttctctactaaaaatacagaaattatctgggt<br>gtggtggcacgtgcctgtaatcccagctactcgggagctgaggcaggagaatcgctcgaattcaggaggcagaggctaaagtgagctgagatcgtgtgcc<br>actgtactccagcctggccaacaagagtgagactctgtctcaaaaagaaaaaaatatataaagaaagaaagaactaaaattcatcaaaggtcacttaaag<br>caaagcactctatttattcacattttatagatactaattatgttttcactcatgcttttcagtatttcaaaataaaatggctcctcattttcatgccaaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>acatctttacaaaaattgttacagattatttccaataccttttgctcagcaatttggcatcaacactactcaggcaacaa<br>cattcatatggtaatagttaaatttgtttttcactagggccctctcagccaaatttttcatttccagcctgcgcatgctgaactctagaagatgttgtaa<br>ttattttattgaacatgggtatttctaaatcaattaatatcatgtatgttgccaattattttcctgcttaaagagtgggcgttactctgtaaatttgttt<br>cttttaatcttatttctcaggtaacagttagactggatttgaatttcacctctttctcttcttagctgcatggcattgcaagaatgttaacctctttgaa<br>gcttactttcctcatctcta	Other	<UL><LI>Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA,Swergold GD. Reading between the LINEs: human genomic variation induced by LINE-1retrotransposition. Genome Res. 2000 Oct;10(10):1496-508.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042149">PMID:11042149</a>.</LI></UL>	E:Retrotransposon display:L1 display; E:Insertion-specific detection:PCR	detail insertion position unknown TSD unavailable	59	506	550	NA	intron:GDEP:NR:026555:1/2	
0	chr11	37448811	37448896	2000266	0	+	11015; RIP_L1_chr11_037_01	NA	NA	LINE	L1	L1HS	attcatagccaagatttcgaagcaacataagtgtcctttaacagatgaatggataaataaaatgtggtacatatacacagcagagttctattcagccata<br>agaaagaaattctgtcatttgcaacaatatagatggaactaaagtttattatgttaagtaaaataagccaggcacaagaagataaacatcatatgttatc<br>acttatttctggaatctaaaagtcaaaacaattgtatttatgaagatagagaatagaagtatggtagggtagtatagttttgtgggtagggggagatagg<br>gatggttatcgtacaagataattagaatgaataagacctagtatttgatagcacaagagggtgactatagtcaattataatttaatt<font color="green"><u>TAAAAATAACTAA<br></u></font><font color="red">TAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAAAATAAAAAAAAA</font><font color="green"><u>TAAAAATAACTAA</u></font>a<br>agtataattggattgtgtctaagacaaaagataaatgtttgattggatggatacccatcaaacatttcatgatgtgattattatatattacatgcctata<br>acaaaatatgttatgtaccctgtaactatatatacgtactatgtacccacaaatattaaaaaagaatttaaaaagatatgccctttctttaaataacata<br>gactattgtacaagaaattagatgtctccaaatataactatgattttgaatgccaaatataggatacataggaaaaagagtgagatttcaggaaaaaact<br>gctatgcataggtttaggtaaagagtataattaaaaaagcaaacccagagatagcatgtactaaagtaccactgtttggaattttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	62335221	62341271	2000267	0	+	238234; RIP_L1_chr12_060_02	NA	NA	LINE	L1	L1PA2	actttcatatatgttttaaacaatatgggcatgtaaatctattttctaactgtaattttataaaatttaaatacagatcatatatttgtgatgaaaatcc<br>agactctgaactagatatattgttaccataaacagcacaccaaattttgaaaacagtaccaaaacaaaaacttatattactaataacttttatatagact<br>acatggtaaaaaagtattttcgatatgttagatacataaaatatatcattagaattaatctgcactctttttaattttctaatgtggctactagaaaatt<br>taaaattacacattagctcacataactttattcgaaagtactggtctagtgaattaatagggtaggcaaaacaagatcttgccaaaatt<font color="green"><u>AAGAATTTTGT<br></u></font><font color="red">TGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCTTGAGCGAAGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGTGCACCGTGCGTGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACAGATGCACCTGGAAAATGGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAAAAACGGCACACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGATTAGGTAAACAAAGCAGCCTGGAAGCTCAAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGAAGA<br>CTTAAATGTCCCTGTCTGAAAGCCTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGAGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAATGGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTATGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCAATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTACA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGATCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGATTGCAATCCGAGTCTCTGATAAAACAGACTTTAAATCAACAAAGATCAGAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTAAACTCAGCTC<br>TGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACCTGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGACTCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCTCA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTGGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGACTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACACT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATCATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGTGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCCTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAACAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTTCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAACTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCTTACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACATCTTATATAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACGAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTAGAAACCATCATTCTCAGTAAACTATCGCAAGGACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGAGGTGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATTTAAAAAATAAATAAATAAATAAATAAATAAAA</font><font color="green"><u>AAGAATTTTGT</u></font>cattcgttttatctcaagcttctcacaaaacctgaaaa<br>ctaatgatgtgttctgatgtttctgctttggaaattagcatatacactcttcattcggtcagtttgttgaaaagcccactctaattcactgggccatttt<br>ctacccatcctttcaaagttctactccaacaatacatgctctaagaaggtcaattctctggcccctgaaagttaagttgctctcatctcctcgatatgta<br>agtgatagctgtaatacatcaatgcttcatatgtctgtgtaccctaaaagactttcctacactgaagcaagggtgtgcaatttggttttggatctgaaga<br>gcttagcacaaatcctgaaacagtaagcctcaaaacaacttgtagaataaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FAM19A2:NM:178539:1/5	
0	chr12	83844045	83844608	2000268	0	+	54355; RIP_L1_chr12_082_01	NA	NA	LINE	L1	Ta-1	tatgaggccaacccacattgctcaggacaatccgctggacttaaagtccatcatcttaaatattaatctcatctaaaaaaacaccttatagaaacatcca<br>gaatgtttgaccacatatctgggtaccatggtccagccaaatagacaaataaaattaccacacaatgtatatagctggtctagcttatttatgtatctaa<br>gtcatataatatgaaaaggttagccctcacaagagatacattgatcatttacttcaattatgacactattcttagcattggaagagattcaagatacata<br>aaagatacataaaattattcctactgtttcatatggccggagtcttgagtgctttttaaattgctatattgctagtatttagaa<font color="green"><u>AGAACAAGCTCTTAAA<br></u></font><font color="red">AGAACAAGCTCTTAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGAAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACAAGCTCTTAAA</u></font>tattttattaatgaaagaaa<br>aattaacaacattagctggtacaccccaaggagaatacaagtagctgcaaaagaagcaggggtatattaagtgtcaaaataaaggtcaaccatattctag<br>gggaagccaaaagaaggataaaaatagagttgcagatattggtaatatttaagatactctgacatttagatagaagtcgaatcatgtagagagaaggaga<br>aaatatgtggagaacataatacaaacaaggcactaaagtataagggggaatatcaaatttggcttgcttgaataaacttgcaaaaataatttggtgcctg<br>ggaaatgtgagagaaagttgggaaaataagttggataaccatagtgcgtggttcctcctagtag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	46906900	46907036	2000269	0	-	682; RIP_L1_chr13_045_01	NA	NA	LINE	L1	L1PA2	ttgcagagtagtcctaggaccccctggagaagtctcccaaagatgcatgctagggaacactctccatatacacacacattacaaacacaaacacaaacgc<br>atgcagaatttattgcctttttctggccaaacctgattccaattaggttaacttcctctgttaactacctcctctcctccccaacctgaagttgtgacat<br>gttgtctctgctgtagcgtccagatggccaaagcatggggcagggctgaccctgatgccccatgccaggcccctgcccctagcccctgcagccatctggg<br>tccgtgtggatccatgtgggatctcagtagctgcccccttccagttccccacagaggaggaaaaacgtcagaaaagggaagtggggtt<font color="green"><u>AAGATGGTGCAG<br></u></font><font color="red">ACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACCTAAAGTATAATAAAA<br>AAAGAAAAGAAAAAAAAAAAAGAAAGAAAAAAAAAAA</font><font color="green"><u>AAGATGGTGCAG</u></font>tcagttacagcatctccactgacattccggctcccaaagttttgttgctga<br>tgtctcttccttcatcctttctgttcttgtaagttcatgtctttagaataattccttaattgttgtttttgagcagtctttctaccattgctttagaggg<br>acttcagcagtatgcaaaagtaaacgtacgttcaggctgccatttttacaggaagctagagctcacagcctttttattttataattgtggttaagcttaa<br>actcttaactgttgcgctgtgcctcacctctatgtttcactgtctcggaagtcttttttttttttttttttttttgagacaaagtctcgctctgtggccc<br>aggctggagtgcagtggcctgatctcggctcactgca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	52404346	52404457	2000270	0	-	8322; RIP_L1_chr14_051_01	NA	NA	LINE	L1	Ta	ctattctaaattgcggtttaaaattcattaacaaggatttactgcgtgcttaatgtgtgtgacccagaagtgcatgcacatgttacaataagtttctaaa<br>gaaaccagccactgaacgaatgtgagagcctgtgcgttacctcactaattctggaagacacttttcgttgttcgttaaggcttcctgtggccacagaata<br>aacttgcaagcctagcacctgaggcttccataattggctgctcccttctccccttcaggcctgtatcttatatggaaagactcagcagagcacctgtctc<br>cttttatcagcttagtacaaggagggctggtaacacacttgtttcccaattcacttttaaaaaatattatttcccaattcacttttt<font color="green"><u>AAAATTATGTATT<br></u></font><font color="red">AGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TAAAAAAAAAAA</font><font color="green"><u>AAAATTATGTATT</u></font>tcttttgtaaagaaatacatagccattttcggaaaactgaaaagcatagagattcagaaaacagaaatcttctac<br>aaccctagcacctatagacaacccagttaatctttgcaaccatttttcaagtgctttttcccaccttggagtgcttacatttttgtgtctgatatcatgc<br>agggaaggaaatattaactaatatacataatcatctgtggggccctgcataaatgctgaccttttgggaagatttctcatgatctacactgcaagattta<br>ccatcctgctccatttcctttagagaatgaagttattttaatttttcctcattattcaagtgtcaaactttattttccatcttttaaggctattatacat<br>ctctgataatgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GNG2:NM:053064:2/4	
0	chr15	29411483	29411896	2000271	0	+	1936; RIP_L1_chr15_027_01	NA	NA	LINE	L1	preTA	gaggcggtggcctggggtccagctgggttaggctgtgggtcttggatgggcaggagccctcctctctggcctgcccacagcagcgtgagctccttgctgt<br>gggcactgaccaccttcacggcccaggattcttggggaactgcagagtaaggagaagacttactctcacctagccgcccagagggtgtgggccaagggct<br>tgctccagcatgaccttggccatcaggggcatataaaagagacggcctttcaaggcgcacaccagctttgtgcctccctcttcccagaaagtatacatgg<br>tagaggcaaagaaagctgttccataggagactgtcacagagagctgcgtatatgccgaaatgtatatgcactcgctctgaatgaatatgctt<font color="green"><u>AAGAATGA<br></u></font><font color="red">TGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAATTAAAAATAAATAAATAAATAAATAAAATAAAATAAAATAATAAAATAATTCACAATTCTAGCAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGA</u></font>aaagcaaatacaattctcgacgtggccaacaaacaagaatgccagggatggccacatccttggggaatgaagagaaat<br>gtcgcctgagtcaaagctggagggaacgggattccactcaggaggccaagggggacattcctgccgtgcccaggacaaggcggggaagcaggtcccgggg<br>agagagccctggctagctgaggacatgcaggcaggactcccaccaaatcatacacatctttaaaaaacctgtatttaaggaaacatctgagccatggcct<br>gcattcctcccagcagcccttggaggccatgtccatggaggggctgccatggccagcgtggacgggcgtgggtgtgtccaggccctggccctccccactc<br>tgccccggagttga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	41031553	41032528	2000272	0	+	239086; RIP_L1_chr18_039_01	NA	NA	LINE	L1	Ta-1	aaaatctcataacttgagtaatttgtatttttgatatgttacttttttgtcattccaaattatagcaagttaatctcttatacatttattaactttttta<br>ctatttgtaaataggatatacgctactaaaaattgagacagtaattaatgaagtaaaattttaaagcattaaaaaataagtcaataaaaatatatacttt<br>taatgtaggtacaatatcttctataaacaattcacaatcctgtacataatttgtcgatgttgcttgagcattttagtttcattaatatgggctaatatga<br>aatttctgcctttcatcattttagggaagctttgacatatttcttccttgtttgccaagagaactttggtgtcctttaatgccaatgctttt<font color="green"><u>TAAAAACA<br></u></font><font color="red">TGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCA<br>TCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAG<br>AGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGA<br>GAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATAC<br>CATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATT<br>CACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGACATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCGGCACAATGTGC<br>ACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATAAAAAAAAAAAAAAAATAAAAAATAAAAAAAAAAAA</font><font color="green"><u>TAAAAACA</u></font>gtttaccctcagtttt<br>gtagaaacacagtagccagggcagatgtgggaagggtggagtttgggagttaaaggtagccaatggggaggagggaagggatcctttcctgtgatcactg<br>acagatttctctactctcaaataagatgccctgcaggctcaatgggatgccacgaattctcactgaatttatgataattgatgactgcctctatgagtct<br>cttcatgtaaagtttcttctcatatattccatcccaactatttggggaggagaagcctatagaacactatatacactttttttttttttttttttttttt<br>tttgagagggagtctcgctatttttgcccaggctggagtgcagtggcgcgacctccattcactgcaatctctgcct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	51762747	51762748	2000273	0	+	13146;1104685128966; RIP_L1_chr18_050_02	NA;ATCATCACCGGATTCCTCAG 	NA;GGGCAGGAAAGACCCTTAAA	LINE	L1	Ta	ctaacattatgatatcatcaccggattcctcagcacaacagcctgttcttaactcagttccgaatgttttctctcactatcatctcgatcacttccaaat<br>gttttctctcactatcttcttgatcaggccatcccattcttaggttcttactgtgccttctcactttgtcttaaacagataaagtccttcagctgattac<br>atttcaaatgcgtcaccaggttggccagaacgcgtcggtttcttcctatcttgtttcttccacttttttaaataaaatagatttttctaggaggacacta<br>tttaacttttcagcacatatctccaagttttttttctaggtacatagaagccctgctttctgtatattgtaccattttcttatt<font color="green"><u>AAAATGTCTTGAAGGA<br></u></font><font color="red">GAAGGAGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAAC<br>CTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAGAAAAAA</font><font color="green"><u>AAAATGTCTTGAAGGA</u></font>gtatacacagagattccaaacagc<br>tttcctatgttttactcattaatatgggcagccaggatctccaggcatttgaagaaagcctttaacatggaaaaacagcgcaagaaaaaaaaaaaaaaaa<br>aacacagcggaaaaaataactttggcagaaacagaggaaacaaagggaactgaagaagcttttaaaaaatctgatgatataacattattcagagattaac<br>atactcggaagatcctttaggatgaaccagacaatgttagaaaagaacaattggacgggcgcggtggctcacgcctgtaatcccggcactttgggaggcc<br>aaggcgggctgatcacgaggtcaggaaattgagaccatcctggctaacacggtgaaaccg	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	NA;55	NA;571	NA;403	NA;NA	intergenic	
0	chr20	54434622	54440616	2000274	0	+	237994; RIP_L1_chr20_053_01;AC208173	NA;NA	NA;NA	LINE	L1	Ta-1nd	ggatgtccatgttgtaatttcaggaacctatgaatatgttaccctacatggcgaaaggggcttaggtatgagtaagttaaggttcccgagatgagaagat<br>tatcctggattatctggatgggtccaatgtagtcataagggtcctaatgaggaggcagaagagatgtggagatgggagcagatgttgaagaaatatcact<br>gcttctggaagggggccacaagccaagaaatgtgggcaacctctagaagctggaaaagacaaaacaaacaactgacaacaaaaaacccagttctcctcta<br>tagtgtccggaagaaacacagatctgctgacaccttgattttagcccaggagaaaatatgtgggactctgacctctagcagcataac<font color="green"><u>AATAAATTTGTGG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACACAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGAAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCCCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACACCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGCCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATATTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAGGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CGAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTAAAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTTAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGTGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATAGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATTCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGACAGCAAAAGAAACTACCATCAGAGTGAAC<br>AGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAA<br>AAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATC<br>CTCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGC<br>TGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACATATGTT<br>TATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACACGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAAACAAAAAAAAAAAATAAATA</font><font color="green"><u>AATAA<br>ATTTGTGG</u></font>tgtttcaggtcactaagtttgtagcgatttgttacagcagccagaagaaactaatatgatagtcataggaggcttcattgaaaagtggacat<br>ttggacaaagatctaaaaggaggggtagcacccttcctgtgcagagattgtggtgatgtggagccttctacactccatgcctagtcaggtctccaggcat<br>ctgcaacaaccactctcctggattaggagtttaggttgccccgacccctactccacccatgcagatcactagggactgaggaggtttcccagcttcacaa<br>ctaggcacatctcacccactgaattctcccttgacaatggtgcttatgcctgcctctggggacctgtaggtgggcctgccaagactggccccacc	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr3	4066937	4069555	2000275	0	-	238924; RIP_L1_chr3_004_02;AC210910	NA;NA	NA;NA	LINE	L1	Ta-1	ccatcacacaatgctgaatccctacagatcagttaaacagacactgttcctaccagagacaatgagagatcaaactgcccaaaacaaccaggcaaacaag<br>cacactgttttgcatctttctactttcaaagaaccttggacagcaagtaagcactttctaacttacccaaattcagggtcattaaaacatggcatttata<br>cctcttctattaaacttacctaaatgacttgatagagatcttggagaataaggatgtgtcctccagagcattagagccctataaaaatataatgtaattc<br>aaacatgtgaactacatttgtaattttaaattttctagtacatatattatttagggtgaaaagaaacaggtgaaattatttttaaaaa<font color="green"><u>TATATATTTTGT<br></u></font><font color="red">CCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGT<br>AAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCA<br>GGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATG<br>CTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGC<br>TCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACC<br>TTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTG<br>GTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCAT<br>GATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGC<br>TTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATAC<br>CCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTT<br>CAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCT<br>AATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGT<br>TTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCCTTTTGATGTG<br>CTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCC<br>GGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGACATAGGCGTGGG<br>CAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAA<br>ACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCA<br>AACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACA<br>CATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAG<br>TCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGAGTGTAAACTAGTTCAACCATTGTGGAAGACAGTGT<br>GGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGA<br>CACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGG<br>CACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAAC<br>TATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTG<br>GGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACA<br>TGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAATATATATATATATATATATAT<br>ATATATATATATATATATA</font><font color="green"><u>TATATATTTTGT</u></font>aatctattttactaaaacaatccctccaaactactaccatttttacatggaatcaatatagaaattacc<br>aatgttattatttttattctaaatcttcaaaatctgatgtgtatttgacatgtatagtctgttctgtgaaaagaccacatatgcaaagtgaccaccaagc<br>acagaaggagctgagaaaccaaagaatgaggcagacaaatccagtttgctagtaaagggtgatttactggggaacttgcctcatggtcttgggtggcagc<br>aagacaggtagatctccacaccattactcctcagaccaagagcttatataccacagagaaagggcatatgtgctctatagccaattaaaggcagccctcc<br>agaaaaggcaagaatgcta	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr3	33553208	33554075	2000276	0	+	52428; RIP_L1_chr3_033_01	NA	NA	LINE	L1	Ta-1nd	aaatgtgagctgccgtgagcggccttaaagtagtttttaaatcaaattgtggtctagttgtgttagtgtgaggaggctctatttacttagactacaatgt<br>gactggagtcccctgcataagccatgctgaagccctgctcattattagtactctcatctctaggagtccttgagccctctgtatcacattaatgagaaat<br>aaaatataaaaataatatgattaatgtgttgtcaaaagttaacatactattcctccttgttttcctaatattttcttccttctgtattgagcttggggag<br>ggtaaaacactggttttgtgatgaagacaagaaatggctgtctatcttcttaccagagtctgtaatctctaaagatagtctt<font color="green"><u>AAGAACACGTAAAAATAA<br></u></font><font color="red">AACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCA<br>TCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCT<br>GGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCT<br>AGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTT<br>ATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAAT<br>ACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAAC<br>CAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGG<br>GGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAA<br>CCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACGTAAAAATAA</u></font>ctgcttttgatgct<br>actttggcagtctctcacttaagatctcaataggtgaaaaatgcttagaaaggtacagtgggacatacactggaaaaaaaaaaaaaaaaaaaaggccagg<br>agtggtggctcagcctataatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggagatcgagaccaccctggctaacatggtgaaaccc<br>tgtctccactaaaaatagaaaaaaattagcatggtgtggtggcatgcacctgtagtcccagctgttagggaggctgaggcaggagaatcgcttgaaccca<br>gagaggcagagattgcagtgagccaagatcgtgccactgcactccagccagggcgacagagtgagact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CLASP2:NM:015097:35/38	
0	chr3	152311739	152313155	2000277	0	-	239284; RIP_L1_chr3_153_01	NA	NA	LINE	L1	Ta-1	ctgggatcaagcaatcctcccacctccacctcagcctcctgagtagatgagtagctgggactacacatgtgtgccaccacacccagctaatttgtaaaaa<br>ttttgtagagacagggtcacactgtgttgctcaagctggtctcaaactcctggaatcaagcaatccccccacctcagcctcccaaagtgctggaattaca<br>aacataagccactgtacctggtctgtgttaccattttcatagtaaaatatttttaccacaaagctaatttatcactaaatatactctgttctcttataat<br>gaacatgtgtcattctttttgtatgcccagcatacatcttgctttttttgtgtaaggaattttctaccttatgagtgtgggtggg<font color="green"><u>AAACAGTGACCTCTT<br></u></font><font color="red">CTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTC<br>ACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGG<br>ACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCA<br>TCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAA<br>TCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTA<br>TATCTCTGTTTTGGTACCAGTACCATGCTGTTTGGGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAG<br>ACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGT<br>TAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTT<br>CAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGT<br>ATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGAT<br>AGACTGGATGAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTG<br>GAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACA<br>GGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGG<br>TGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACAGTGACCTCTT</u></font>tccataaaaagtctaggaaaattgcttgaagagaggacacaggcatgtgtctttggttttgccaatta<br>gatgctctcttggaggatgtggatttgagaactgatgatgcaaagacctatcctttgggttagggtggcaagagctctagtcagcatctggcactatgag<br>tatctgcagtataagcctcaaaatctgtgcctggaaacagtgacatcagtgtctctataagaccagccctactaggctttatgttgggcaatacaaagtt<br>ggacttggttcttggtgaaagtctccaagccaattatctggcccacttgggaataaatgataattctgcttaaataaaccaaatttctgttgcttgcaac<br>aaaaaccctgactgatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	40966456	40966457	2000278	0	+	6405; RIP_L1_chr4_040_01	NA	NA	LINE	L1	Ta	aattttccatgggctttctttttgttaagggtaatacctttttttatccctccaaccccccaccaactttctgcttccatgactaactcatttaaaaaaa<br>aaataaattctgctctgctgatagaacaagaactgaagattttcttactgtgactaaaggctacatacacttgtacttggcccagatttcaactggtcac<br>cctggaaaagcttgaccctcttttgtggccactgggtctgtttgagaaatacacctacaagcattgaactagtaagctatccctaaaaaaacagtccata<br>actgattcacctacctgtcatctgattcaaccaacaattgcaatgctgtgtttttcactgagcaaaaccacgtaaaattatatc<font color="green"><u>AAAAATAAGATAAACA<br></u></font><font color="red">GCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTA<br>TAATAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAAGAAAAAAAA</font><font color="green"><u>AAAAATAAGATAAACA</u></font>atcatttttttccccaaaagaagtaaacgacatacacc<br>ctatggcccagcaatatcgagagtgtatgccacatgccttctcatgcagttcaattagaggaatgtgcggggtgctccctgtggtactgggaaaatgggg<br>gcaacctgcaagtctatcactctaccaggggaaaggtaaaatgtgttggattcacagaatggagcaccatccagccactggaaacaatgcagcccatgta<br>cacatagcctatggatacatctccaaaacacagtacacgggggaaaatacccattgaataaacacacacacacacacacacacaacaatgcacattgcaa<br>gtatagttttgaacaaaaagttacccattaaacacattagaatagt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:APBB2:NM:173075:6/17	
0	chr4	46056009	46058195	2000279	0	+	239036; RIP_L1_chr4_045_01	NA	NA	LINE	L1	Ta-0	acattgttcccatcgtcagcccaggtaggtttccaaagtgtttcttggctccacaattatgtctcctatctgaaaaatcttaaatccaatgtgtggtttc<br>attttgttatccactactgcaataaattttactttattaagtttctgttactttcttttttaataaggcaaaaaaactaagcagaactttgctttcagac<br>atttatttaatttagtaattattatcactgtcattaccttgagaagaacatagtggattttctattaaaatatttctgagtccgtgataataaaaaacac<br>ttaagatattaacaggatattgagaaaacattttggatatcattgctatattctccatggcttcccctactcaagatcctacaata<font color="green"><u>AATAGTCTCCCATC<br></u></font><font color="red">AAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATT<br>TATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCT<br>GTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCA<br>GCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCA<br>TTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTT<br>CTTCCATTTGTTTGTGTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTAT<br>TTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACAT<br>TGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGC<br>AAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAAT<br>AGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGAT<br>ATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAA<br>CTTAGAGTATAATAAAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAATAAATAAATAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATAGTCTCCCAT<br>C</u></font>acatttgaaataaaatttaaagtccttaaaatggcccacaaaaatttacctgatctaactattggccccttctccaaatttattttctgtgactattca<br>ttcagctccaaccacatttgtcatttttctgaaccccaaagcatggcatagcaggaagatctggcttcaaaaaccatatggttccccctgcctggaatat<br>ctttctgcccaatatccaccaggttagcaccacacttcattgggtcactgctcaaatgccacatcatcagaggtatctattgagactccacaatataaaa<br>tagcaaatatcataccactcacaccctgtcattttctaaacattgattttgctatctcttcacagccttcatgactcactaaaattt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GABRG1:NM:173536:7/9	
0	chr4	78236275	78236540	2000280	0	+	1132; RIP_L1_chr4_078_01	NA	NA	LINE	L1	preTA	gattaaaaataaagtctttaaagtacaataggattctcatttagtagccaaacttgaaagcagactggccctggggtattcatagtactagtcagtaatg<br>cctaggcctgatgacaaaaccatgagccaaaacttaaaatgaaggaatacatgtcagtttttggctgaggttagtggcagaaatggatctcttgctcacg<br>aggtgttttctgacttcaagccctttcttttggacaaagtgaaacttgctctccttacttttaggatggagttgaaatccgtagtgtctttagacctgtg<br>atgctattggtttttgtaagactccctgtactgagcgagtgtgaaggcctagtttgcgtttcctaagaaggcagagttcccaggtta<font color="green"><u>AGAAGTGTGTGTA<br></u></font><font color="red">AAGAAGTGTGTGTACGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTG<br>GGGTCGGGGGTGGGGGGAGGGATGGCATTGGGAGATATACCTAATGCTGGATGACACGTTGGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATG<br>TAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAGTGTGTGTA</u></font>aaacacagttgggcttgggtg<br>tacacaagtcctgccttctagccccctgtctgagtgtgccaatatgtatccaaagtcaattctattccacaagattcctagaggacgggaaagtctgagt<br>ggtggggcctggcccatccactatggcagtcacctggatgttgcaggggagcggccactgagccacacgtgacgttcctggtttgggaatagtatatcat<br>tggtgttacttctgtggcacagctctacattctacaagcttaagacccatctacatcttttcaggtctcacagaagatgcagtaggactgatcattttgt<br>aaatcactttcctctgaggactgtactggcctggagatgaatattcaactcttcatttcccactac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr4	91596799	91602908	2000281	0	-	238834; RIP_L1_chr4_091_01;AC225697;AC205795	NA;NA;NA	NA;NA;NA	LINE	L1	Ta-1d	agatgatttacctacaccatgtttgccaaatcagagtaaagacataatttaggacatcaaaagtggtaggagaaagcttgcttcacacttgctcaacagc<br>aagcacttgtagtttagcaaaatatagaaacataaaaaaaaaagttatttttttttctttcagtctgggaccagaaatagtggacaagtagagaattatt<br>tttgttttcttacggcaatactagaaaatcaaaaacattagatatttcttccttttgttatatttcccaaggtggtaaacacccaatatgaatgtaaaaa<br>tttaccatttttctgagttctgtgaagactgtataattatcaattcttaaatcagtccacaaataaacatgtgttaccacatggtat<font color="green"><u>AAGATAAAAACAC<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTTCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGAAATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGCACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAGAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAATTGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACATAAAAAAAAAAAAAAAAAAACCACCAACCCAAGCCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGATAAAAACAC</u></font>acatactatataaattttagatcatgtgtgttaacaaagttttcaaatacatcaacatcaaaatatgtcagtacagg<br>caaaaaaaaattggtctacccataagatatacactaacattagaaatcataaaattgagttcaacatacttaaaatacaaaaaataccaatttgatttca<br>aactaatattttgtgaatccacaaaataaactcagctataactagctgtacaatacacatttactagacatatagtaatatagaatatttttttcttgca<br>tccttacaaagcacactctctacatgtgattaaaaaaacatgcattttctcttaaagcacatattatttctagattgaaataagccttgcaactgtaagt<br>aattgtttat	UCSC;UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	NA;NA;NA	NA;NA;NA	NA;NA;NA	NA;NA;NA	intron:FAM190A:NM:207491:6/8;intron:FAM190A:NM:207491:6/8;intron:FAM190A:NM:207491:6/8	
0	chr6	57423087	57429120	2000282	0	-	238745; RIP_L1_chr6_057_01	NA	NA	LINE	L1	L1PA3	tattcccagaggctatactggaaagctcttaatattatggtcaatttactatacatagaggagaaaatcacctctctcaagacatgggacatgaaattct<br>atagggcattaagagattctgtcctaggacttgaagaaattttaaatcccctttttgaaaaaaattggcccaaacagtggcccttgtactctctgcttat<br>aatgacactgatcaaatcttctgagacagaagctggaagaggaattaggaagctattgcaataattagataagagatggtgatggtgtggaccaatattg<br>tggcagtacaaactggataatgatatactttcaaggttgagacagaacaatttgctgagagcatcggtatgagagaaaggag<font color="green"><u>TAAAAGACTATATACATC<br></u></font><font color="red">GGGGAGGAGCCAAGATGACCGAATAGGAACAGCTCCGGTCTATAGCTCCCAGCATGAGCCACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGATAGTGGGCACAGGTCAGTGGGTGCGTGCACTCTGCACAAGCCAAAGCAGGGCGAGGCATTGCCTCACTCCG<br>GAAGCACAAGGGGTCAGGGAATTCCCTTTCCTAGTCAAAGAAAGGGGTGACAGACTGCACCTGGAAAATTGGGTCACTCCCACCCGAATACTGCGCTTTT<br>CTGACGGGCTTAAAAAATGGCGCACCACGAGATTATATCCCGCACCTGGCTCAGAGGGTCCTATGCCCACGGAGTCTCACTGATTGCTAGCACAGCAGTT<br>TGAGATCAAACTGCAAGGCGGCCGCAAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCATCCAGGAAGCTCAAACTGGA<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACTTCTGCAGA<br>CTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCTGAGCAGCCTAATTGGGAGGCACCCCCCAGCAGGGGCACACTGACACTTCACATGGCAGGGTACTCCAACAGACCTGCAGCTAAGG<br>GTCCTATTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCAAAAACACATCGGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAAAGCAGAGTGCCTCTCCTCTTCCAAAGGAACGCAGTTCCTCACCAGCAATGGAACAAAG<br>CTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCAACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAGACCAAGGCTCGAGAAC<br>TACGTGAAGAATGTAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAAAGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCGAGGAGAACTTCCCCAATCTAGAAAGGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAAGGCCACAAAGATACTCCTTGAGAAAGCAAGTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTCAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCACCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATGCTTTACACACA<br>AGCAAATACTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGAAACAACCGTTACCAGCCGCTGCA<br>AAATCATGCCAAAGTGTAAAGACCATCGAGACTAGGAAGACACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAAGAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAAACATTAACACCCCACTGTCAACATTAGACAGATCAACGAGAGAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCGGACCTAATACACATCTACAGCACTCTTCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGTAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAACCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCTTTCAAAGCAGTGTGTAAAGGGAAATTTATAGCACTAAGTACTAAGTGC<br>CCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGGCAGAATTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATTAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATAGATAGACCGCTGGCAAGACTAACAAAGAAAAAAAGAGAGAAGAATCAAATAGATGCAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTGGACACATACACTC<br>TCCCAAGACTAAACCAGGAGGAAGTTGAATCTCTGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGCTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTTAATAAAATACTGGCAAAACGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCCGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGATAAAAACCACATGATTATCTCAATGGATGCAGAAAAGGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAATTCTCAATAAATTAGGAATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAATACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAATGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAAGAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAATCCACTGCTCAACGAAATAAAAGAGGTTACAAACAAATGGAAGAGCATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGTCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAAAATTGGAAAAAACTGCTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTGCTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAACGTCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGATGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGAGTAAAGAATTAAATGTTAGAC<br>CCAAAACCATAAAAATCCTAGAAGAAAACCTAGGCAGTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCATAATTGACAAATGGGATCTCATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAG<br>AAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCCAACAATTTTACAAGAAAAAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGTTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCGCAATGAGATACCATCTCCCACCAGTTAGAATGGCAATCATTAAAATGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCCTTGTGGAAGTCAGTGTGGCAATTCCTCAGGGATCTAGAACTGGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAAGGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATCAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTCAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAAGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGATGAGTGAGTGGGTGCAGCGCAACAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAATAAAAATAAATAAA</font><font color="green"><u>TAAAAGACTATATACATC</u></font>aaggtttttaacctgagcaactaaaacaatgagactgccattatctga<br>gattggaaagacgataggaggagttggtttggggcagaatggtataccaacagcttagttttaagcactttaagtctgagatacctcctaagtattatga<br>tgtttgtataatctagaacatagatcatctatagatcataagtaggcacttggatatctgggtctagagctcagggaggtggttaggctgaaaatatgcc<br>cttaggagttattggcatatagatctatgtgaagccataaaaaaggatgagatcacctgagtgtaaatataaagaactaaagtgtttcctggagtgctaa<br>actatctaagaagaatataatacccaaattcctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PRIM2:NM:000947:10/15	
0	chr6	66595055	66595830	2000283	0	+	239277; RIP_L1_chr6_066_03	NA	NA	LINE	L1	L1PA2	agatttttaaaacagattttgaaagaatctaaacatattttcacacactgtttctgttttgtttgcttttataattaccaggagttatattttagttgaa<br>atattataaagaaataaagaaagtagcttgcaagccaaatatttccacagagaatagaaattcaattattttttgaaaaagaaaactgtcaatgaacata<br>ctagccaatttacaggcataaacaactgaaaaaaaagtgagcttaaagtggacattgggactatcaggatgtaacattgagttacatgttatttgctctt<br>ttctcaaaagagaaaaacacaatatttttaaaagattggaattaaagattttctgttactttaacagcacagggaatgctat<font color="green"><u>AAGAAATCGGAGGTTACA<br></u></font><font color="red">TACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATC<br>CCTGAGGAATTGCCACATTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC<br>CTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATG<br>AGCATTTTTTCATGTGTTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACA<br>TATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATC<br>GCAAGAACAAAAAACCAAATACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGA<br>CTGTGGTGGGGAGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTA<br>TACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATCGGAGGTTACA</u></font>actgat<br>cctacaccacacataggggatactgaagtggttttcctaccaggtgtactacaagtcagccacagattctctttcagtacgcctgagaataacttcactg<br>cctcctgggtaacacaagaaaatatgacagaattagtttgaatgcactgaaataattttaggtgaattattagcccctttttctcatatctgtggtcaga<br>aatatgaaggttgtagattttgcaatgaattcgctttttctgtttgcctcaattgagtcttgctttatgagggaaatcagaatcatacacaatgtttatg<br>tcccccaacagattctaaccattctacccaagaatattacatatgttgatatatgaatagaagaataggaatataa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr7	88091308	88091749	2000284	0	-	4297; RIP_L1_chr7_087_01	NA	NA	LINE	L1	Ta	caaaaactgcttgtatctgcctgtcatgatggaaccatccttcatacaaactaagccagatatcctcaccttcaccttcaaacagaagatgccccattaa<br>tgttaatttctcatctagctctgtcaaaatcctaccagagtattctgtaacctaaaaactaaattgtaggctgggcgcggtggctcacacctataatccc<br>agcactttgggaggccgaggtgggcagatcacttgaggtcaggagtttgagaccagcctggccaacgtgatgaaaccctgtctctactaaaaaaaaaaaa<br>caaaaaaaaaaaaaacccaaattaaagataacaatccttacgtgaaatagtagtagtagaagaagggatggaggaaagaaaaatgagtggtt<font color="green"><u>AATATTGT<br></u></font><font color="red">GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAAAAGAAAAAAAAAATAAAGAAAAT<br>GTGGTATAAATACACAATCAAATACTAAAAAAAAAAAAAAAA</font><font color="green"><u>AATATTGT</u></font>taacattcttcagcgaaagaccaccaggtgaataagatgaacaagtcagg<br>cttgtactgctgcagaaggcgagcacacataccacagagaacacttatctgggcatctcagcaagagggtattagaaagaacctattttaggagagggtc<br>tgggcttcagttgggtgatttggataggacatgacagaacaggagttcaccagaaatgaaatcctgtcagaaagcaggggtaattctaagattgagtatt<br>ttagtaaatcttgtctgcacagagagcagactagagtgaggacaaatctgtaattaaagcagcagtcactcatcctatctggaagagggagatactcggt<br>tttttgtggcttactcagttaccctgcttttgtctcgtttta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr8	126595130	126601134	2000285	0	+	238261; RIP_L1_chr8_126_01;AC193124	NA;NA	NA;NA	LINE	L1	Ta-1d/Ta-0	cttcttgtgtaattgatttattacgtaagggatgtaggagaaccctgtatggaagtgtgggaggctggagagggcaatggaaggggttcagcagagatat<br>ggtttcagctggagaacagcctcagtctgatcccatgggcagtctgaagcatgaatggcaccacagagctggtccctccttgtggctaaggggctgggta<br>ttctacttccagttagttgggggtttgtgactcctagacatttccctgtgagacgattcctgactatccacagaggtaatactctggagaagggtgcatt<br>gctcacagcagcttgagggtggctgtgttggctgggaccgcaaagagatcttgggtgaggccccaacactttgatgctagcacatctttaaa<font color="green"><u>CACTCACA<br></u></font><font color="red">GAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTG<br>TGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGA<br>CGGACGCACCTGGAAAATCGGGTCACTCCCACCCAAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCT<br>CGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCAT<br>TGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCAAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCT<br>CTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCA<br>CGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGC<br>ACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGA<br>AAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAG<br>AGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGAC<br>GATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAA<br>TACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAA<br>GAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAA<br>TATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTAT<br>CCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGA<br>CACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGAC<br>TAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCACA<br>TCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAG<br>CTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCA<br>TCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAAT<br>TAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAA<br>ATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGA<br>TCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACC<br>CAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGA<br>TCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAA<br>CAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAAT<br>TATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTG<br>CTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGG<br>ACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAA<br>AGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACC<br>CTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATC<br>AAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAA<br>ACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGC<br>TCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGG<br>TACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAG<br>AGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATC<br>AAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAG<br>CCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTAT<br>TGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACC<br>GGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTC<br>AATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGAT<br>AAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGT<br>GAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGC<br>TCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAAT<br>TTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGC<br>ATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGT<br>ACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAA<br>AAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCT<br>TATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAG<br>GCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGC<br>AAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAAT<br>GAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCA<br>AAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCAT<br>TAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAG<br>TCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTTTAAATCATGCTGCT<br>ATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAA<br>AATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTC<br>AGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCA<br>CACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCA<br>TGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAC</font><font color="green"><u>CACTCACA</u></font>aatctctctctctaacaaagacaggataagtctgagacaatggaatctatctagccttaactcaattaacactgtgggtgttttgat<br>tgcctctgcattttcatggcaaatgatactacatttctatttgatagtgatacaaaatttaatttgaaaaagtccatttacattaaaaaactgggttgat<br>ttaaagacattagcaaacgatggtacgggtggtagctggataaggcaaataaaatacagggccctccagaatattggagtttgtgggagaccatgtttgc<br>agataaagcaggaaagatccaaggtcccagattgaagtggggactatctttcactctcagtcgccctagacgactcattgcattagtggagaaagcactg<br>tatca	UCSC;UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Reference;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr9	18578671	18579517	2000286	0	+	5204; RIP_L1_chr9_018_01	NA	NA	LINE	L1	L1PA2	atgaatataccttttcaaaccacattctccccctttctctccctctctccctcctagattctgacaatcatccccagtgggtgattgtgttatccctctt<br>caccctgcatctcagactgagaaacactgggattcttatttgctcactatcattctagactagatgaagttagagagaaggctgagctagggaggcaatt<br>tgtcattgtatgaatagttaaagacaagaggctctggaatcataccatctaggttggaatctaagctccaccactcattggcatgtgcctttgagcaagt<br>tcctaagcctcagttttgtcatctgcaaaatgaggataataattgtaaaaataggattagaaggaagattaagtaatcaagtgcatt<font color="green"><u>TAAAGTGCTTACT<br></u></font><font color="red">ATGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTAT<br>TTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCA<br>CATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGA<br>TGGCCAGTGATGATGAGCATTTTTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCATGTTGCGGCATTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCGTAAAAAA<br>TGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACGCCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACGCTGGGGACTGTGGTGGGGAGGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAAAGTATAATTAAAAAATAAATAAATAAAAAAAA</font><font color="green"><u>TAAAGTGCTTACT</u></font>atgagcttgataaatactacttgtattaattgtacccaag<br>ttatgtcttatctttttctttttcttccttagagcctttctgagtacatgatttaatatgggtacacatacgaaaggggcactgacttcccaatgaatga<br>gcagaccttctgttaatttcctattgcagtcatcttttgcagatagctccacattgtacaattatcaactcctgatccagggcagtgaattgcatcctgt<br>acagagttaatgagccatcacaaataggatcagttctattagtactgctgttattcatttattttcattatccaaattacccctatttatatttgttgta<br>aagcacaaagccggtttctgttttaaatatattttttaaaagagtag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ADAMTSL1:NM:052866:4/13	
0	chr1	65909639	65909892	2000287	0	-	31021; RIP_L1_chr1_065_01	NA	NA	LINE	L1	preTA	atttccctccccaccccaccccccgcccgcctccacccttctgaaagtttgttaatctgagtctataaaagaaactgacaatagccagattcatgggaga<br>caaagtatacacatttatcacatgcacatgtgcacaggagccacacaaactacgagactcgaagaatcaaagaagggccagatagttgaagcttcaatag<br>cattttaagctacagaaagaaatagggtcctaaaggctcctgcagggaggtagcaacacattatgagagggtgtggggaggaaaggcatggtgagcaaag<br>gctgtcttgtgatgcagatgaagtctctctgggagcagccctcagaaggaagagatgcagcaaaagtttcactgtccaaacttt<font color="green"><u>AAAAGTATCAGGTCTT<br></u></font><font color="red">AACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGG<br>GAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACC<br>TGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTATCAGGTCTT</u></font>tagtctccttttcttattgagttccttttt<br>cctgatccagataggtggacctcagagaaagcctctgtgtctgttctttacctcaccaatgcagatttcctctacagatgcaaatctacccccaaaagaa<br>cagcttttcagaactattcctgtctgctacttctctgaataaccaactgaaaatacgccaaagaagtatattttgaggtgacatattttggtttcccaca<br>gtgtcaggcactattctaggtactatatgaagaaaggattccaaaagaagaccgagatgtggctctgtccaatatgaactcatccaatcatttttccagt<br>attcattgaatgcttaatactttatcccttagtatttaaatatagtatatcttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LEPR:NM:001003679:2/20	
0	chr8	109147976	109147977	2000288	0	+	18748;4028; RIP_L1_chr8_109_01	NA	NA	LINE	L1	preTA2	gggaaaaagttcttgagctctgctgtatcacaatgggcatatacttaacaattccgtaatatacacataaaaactgttaagtaagtaaatctatggtatg<br>tgtttttaaccacaatttaaaatttttttaatttaaaaatttaaagccaaaaataactacatcaggtgtgtcaagctcaacaccataaacttatttctgt<br>tcactcccacctcaggtgactgctggtctgcatgagacagtcagttcttagtaaaaactaaaagtgggtcatggttcttttttttatgacatatacctat<br>gtctctatgtctgcgccaatgtgtttatttttactgaacacacattgacatcatttgaaagtcctgaggcaattagggaaaaacta<font color="green"><u>AAAATGTCAGGTAA<br></u></font><font color="red">TTGGTGGGGAGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCCAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATA<br>CATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATTAAAAAAAAAAAAAAAGTTAAAAAAAAA</font><font color="green"><u>AAAATGTCAGGTAA</u></font>atg<br>ctttactttctctctacccaaggagtagtttgctttccaaacaagtcttctactagatagcctgttttatatttcttcatagtacttatttcactggcac<br>tatacaatatagtgggctattgatctactgcatgatagtataatttaattccatgagagcacaaatttgttttttttactactatatcctcagcacgtgg<br>aagagtttccagcacatagtaggtgctcaattaacacttgttgaattaatgaataattcctctgatagtgggaaggacaagaaaaaaaacagattgtccc<br>aagcttagccatcaaagtaaatgtgcttacattgaatagaaattgtctttggaaggatagaattctttgatctttttgcttgc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	221827822	221827823	2000289	0	-	chr1-2182;1104685475315; RIP_L1_chr1_218_01	TGGCTCAGCGCTACTAGAGA;AAGGCTCTTTGCCATCAAAA	TGCATTGATGTCTGGCTTCT;AGGGCAGGCCATAATATTCC	LINE	L1	L1HS	agagtgagaccctccaatccagtcacctcccaccaggccccacctccaacattgggaatcacatttcaacatgagatttagaggggactaacgttcaaac<br>catgtcagttccctaggagagaagtttagaacatgttttgaaggaggaagggacatattgtttaccagggcaggccataatattcccggtgaaggattaa<br>gaaggttgaaaggtagaaatctgtaaggcagatgcaaacaaatgataagtcgactggctcagcgctactagagaggtggagacataatggtggaaagaaa<br>taaatagcaagtcaaagaacttcggtggcccacctatgtctaaaaataaatacatacatacatacatacataaaaatgtgtt<font color="green"><u>AAAAAGATTGGATTGGTT<br></u></font><font color="red">TGCCTTGAGGGAAGTTACGCTTATTTTTTTTTTTTTGTCTTTTGTTTTGTTTTTTTTTTCCTTTTTCTGGAGAACGGGGTCTCGCTATATTGCCCAGGCA<br>GGTCTCGAACTCCTGGGCTCAAGCTATCCTCCCGCCTCTTAGCCTCCCTGAGAGCTGGGATTACAGGCGTGAGCCACTGCAAATGTCCAACAATGATAGA<br>CTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAA<br>ACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGA<br>AGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATATCTAATGCTAGATGACACGTTAGTGGGTGC<br>AGAGCACCAGCATGGCACATGTACACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATAAAAAAAGAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAGATTGGATTGGTT</u></font>gctttgaatcaacctggagagaaacttagtcttaatagcgatgagcagtttggcaagaatcagagaagccag<br>acatcaatgcagaccacagatagttttgatggcaaagagccttcatcaggagctttatttcatgtttgtattttattttttaaagtcaactcttcttttt<br>ttaaaaaaaagttattgaagtgtaatttacctgtaataagagaggcttgttttaagagtacaattccggccgggcgcggtggctcacacctgtaatccca<br>acactttgggaggctgaggcaggcggatcacgaggtcaggagatcgagaccatcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaaag<br>tagccgggcg	Other;Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	64;55	857;976	229;349	NA;NA	intergenic	
0	chr5	89450782	89450783	2000290	0	+	chr5-8948;1104685647419; RIP_L1_chr5_089_01;AC208153	ACTCCCTGGCAGTCAACAAT;ACTCCCTGGCAGTCAACAAT;NA	CCATGTTTACCTTCTTTGTGAGC;AAAACCTCGCTGTTCCTTGA;NA	LINE	L1	L1HS	tgcctgcttggagggttatttattctactattaataaactttaggattgacaagaaattcttgcattgctccaatctgcaacaaatctacctaccatgtg<br>ttagtacagctttcaaaatatgattttataattaacattaataaatatttgctgggtacctactatgttccagaccctgtgaaaggtgctagaaatatat<br>gaaaatctcattaccttaaaattgtttccatacacaaaaattccaggagcagactttagtcttgccaaggtgtcattttagtgactgacatggatcacca<br>ccccctggcagtcaacaatgacagcaagcaaagctgcttaacagggagttactgatcttccagctgtattttgcttgtcactgcttt<font color="green"><u>GAAAGATGCTTAC<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCAGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGAGGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACGGCAAGGCCAAGGAGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCG<br>AACTGGGTGGAGCCCACCACAGCTCAAGGAGGTCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCT<br>CTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGT<br>GGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCA<br>GCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGA<br>TAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCA<br>ACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAG<br>GCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAA<br>GGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAG<br>CGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTG<br>TACCTGAAAGTGATGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCA<br>GATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAA<br>ATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAG<br>AGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATA<br>CTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTAC<br>CAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAG<br>GATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCC<br>ATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAA<br>AAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGAT<br>CAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTT<br>AGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAAC<br>TCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAGTATACATTTTTTTCAGCACCACACCACACCTATTCCA<br>AAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGA<br>ACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTCCATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAA<br>ATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAA<br>ATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAG<br>AAGGCAAGAAATAACTAAAATCGGAGCAGAACTGAAGGACACAGAGACATGAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGA<br>TCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGA<br>TCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATAC<br>TCTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGA<br>GTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGG<br>AATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATG<br>AACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGA<br>TGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAA<br>AGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAA<br>CCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACA<br>TAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGA<br>CATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAA<br>AAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAG<br>GAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCC<br>ATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTC<br>TTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCA<br>TCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGA<br>GCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGC<br>TGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTA<br>GACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGTAATGGC<br>AACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGG<br>GAGAAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCA<br>AAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGTAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGA<br>AATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAA<br>ATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCAT<br>TTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCAC<br>AATAGCAAAGACTTGGAACCAACCCACATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAA<br>AATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCT<br>CACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATA<br>GCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAAACTGCACAATGTGCACA<br>TGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAATTAAAAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGATGCTTAC</u></font>tttgaagatct<br>ccatcatgtggaagagaaaaggtacaatgtaacctataaatcaaggaacagcgaggttttagagacacaagtaaaccaccatgtaagtaactcagagagc<br>tcacaaagaaggtaaacatggtgaataaaataaagagttcgtgaacttgatgataaaggaatcaatttcttctccaataaacattttgtaagcactgtac<br>caagaatagaagaaaagagtctccgtcccaccccttgcccaaaggaagaaagagctaatcacaggagatgctccagaatgcctaaagtatcataatgaat<br>agttctactaatgtccacttttcaatggaaagtatggacctcttagattcgcttccaaattcctcccaaaatgact	Other;Venter;OTHER	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA;NA	64;55;NA	6322;6260;NA	235;172;NA	NA;NA;NA	intergenic;intergenic	
0	chr6	97431586	97431587	2000291	0	-	L1-6-3; RIP_L1_chr6_097_01	NA	NA	LINE	L1	L1M2_orf2	caatgagaacaaagacacaacatatcaggatctctgggacgcattcaaagcagtgtgtagagggaaatttataccactaaatgcccacaagagaaagcag<br>gagagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataagtaaga<br>tcagagcagaactgaaggaaatagagactcaaaaaacccttcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacaaaattgatagacc<br>gctagcaagactaataaagaagaaaagagagaagaatgaaatagatgcaataaaaaatgataaaggggatatcaccactgatcccat<font color="green"><u>AGAAATACAAACT<br></u></font><font color="red">ACTGGGGGGTGGAGCCAAGATGGCCGCATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGATGCAGAAGACAGGTGATTTCTGCATTTCCAACTG<br>AGGTACTGGGTTCATCTCACTGGGGAGTGTCAGGAAGTGGGTGCAGGACAGTGGATGCAGTGCACCAAGCATGAGCTGAAGCAGGGCGAGGCATCGTCTC<br>ACCCAGGAAGTGCAAGGGGTCAGGGAATTCCCATTCCTAGTCAAAGAAAGGGGTGACAGATGGCACCTGGAAAATCGGGTCACTCCCACCCTAATACTGT<br>GCTTTTCCAACGGTCTTAGCAAATGGCACACCAGGAGATTATATCCCGTGCATTGCTTGGAGGGTCCTACACCCACGAAGCCTCGCTCATTGCTAGCACA<br>GCAGTGGGAGATCCAACTGCAAGGCAGCAGCCAGGCTGGGGGAGGGGCGCCCGCCATTGCCAAGGCTTGAGTAGGTAAACAAAGCAGCCAGGAAGCTCGA<br>ATTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGACTCCACCTCTGGGGGCAGGGCACAGCCAAACAAAAGGCAGCAGAATCCTTT<br>GCAGACTTAAATGTCCCTGTCTGACAGCCTTGACGAGAGTAGTGGTTCTCCCAGCATGCAGTTGGACATCTAAGAACGGACAGACTGCCTCCTCAAGTGG<br>GTCCCTGACCCCTGAGTAGCCTAACTGGGAGGCCCCCCCCATTAGGGGCAGACTGACACCTCACACGGCCGGATACTCCTCTGAGACAAAAATTCCAGAG<br>GAACGATCCGGCAGCAACATCTGCTGTTCACCAATATCTGCTGTTCTGCAGCCTCCACTGGTGATACCCAGGCAAACAGGGTCTGGAGTGGACCTCCAAC<br>AAACTCCAAAAGACCTGCAGCTGAGGGTCCTGACTGTTAGAAGGAAAACTAACAAACAGAAAAGACATCCACACCAAAACCCCATCTGTACGTCACCATC<br>ATCAAAGACCAAAGGTAGATAAATCCACAAAGATAGGGAAAAAACAGAGCAGAGAAGCTGGAAACTCTAAAAATCAGAGCACCTCTCCTCCTCCAAAGGA<br>CACAGCTCCTCACCAGCAATGGAACAAAGCTGGACGGAGAATGACTTTGACGAGTTGAGACAAGAAGGCTTCAGACAATCAAACTACTCTGAGCTAAAGG<br>AGGAAGTTCGTACCCATGGCAAAGAAGTTAAAAACCTTGAAAAAAAATTAGATGAATGGCTAACTAGAATAACCAATTCTAGAGAAGTCCTTAAAGGACC<br>TGATGGAACTGAAAACCAAGGCACGAGAACTACGTGACAAATGCACAAGCCTCAGTAGCTGATTCGATCAACTGGAAGAAAGGGTATCAGTGATGGAAGA<br>TGAAATGAATGAAATGAAGCAAGAAGAGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAACAAAGCCTCCAAGAAATATGGGACTATATGAAAAGACCA<br>AATCTACGTCTGATTGGTATACTTGAAAGTGACGAAGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATGATCTAGGAGAACTTCCCCAACCTAG<br>CAAGGCAGGCCAACATTCACATTCAGGAAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAA<br>AGCTGAAATGAAGGAAAAAATGATAAGGGCAGCCAGAGAGAAAGACCAGGTTACCCACAAAGGGAAGCCCATCAGACTAACAGCTGATCTCTTGGCAGAA<br>ACTCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAA<br>GTGAAGGAGAAATAAAATCTGTTACAGACAAGCAAATACTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCACTAAACAT<br>GGAAAGGAACAATCGGTACCAGCCACTGCAAAAACATGCCAAATTGTAAAGACCATCAAGGCTAGGAAGAAACTGCATCAACTAACGAGCAAAATAACCA<br>GCTAAGATCATAATGACAGGATCAAATTCACACATAACAATATTAACCTTAAATGTAAATGGGCTAAATGCTCCAATTAAAAGACACAGACTGGCAAATT<br>GGATAAAGAGTCAAGACCCATCACTGTACTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCCA<br>CCAAGCAAATAGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAGGCCATTACT<br>TAATGGTAAAGGGATCAATGCAACAAGAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTTAGAGA<br>CCTATAAAGAGACTTAGACTCCCACACAATAATAATGGGAGACTCTAACATCCCACTATCAACATTAGACAGATCAATGAGACAGTTAACAAGGATATCC<br>AGGAATTGAACTCAGCTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTCTTCTCAGTGCCACACTG<br>CACTTATTCCAAAATTGACCACTTAGTTGGAAGTAAAGCACTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTGTCTCTGAGACCACAGTGCA<br>ATCAAACTAGAACTCAGGATTAAGAAACTGACTCGAAACCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGCATATAACGAAA<br>TGAAGGCAGAAATAAAGATGTGCTTTGAAACCAATGAGAACAAAGACACAACATATCAGGATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATT<br>TATACCACTAAATGCCCACAAGAGAAAGCAGGAGAGATCTAAAATTGACACCCTAACATCACCATTAAAAGAACTAGAGAAGCAAGAGCAAACACATTCA<br>AAAGCTAGCAGAAGGCAAGAAATAAGTAAGATCAGAGCAGAACTGAAGGAAATAGAGACACAAAGAACCCTTCAAAAAATCAATGAATCCAGGAGGTGGT<br>TTCTTGAAAAGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAGAAAAGAAGAAGAATGAAATAGACGCAACAGAAAATGATAAAGGGATA<br>TCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAACACTATAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCC<br>CGACACATACACCCTCCCAAGACTAAATCAGGAAGAAGTTGAATCTCTGAATAGACCAATTAACAGGCTCTGAAATTGAGGCAACAATTAATAGCTTACC<br>AACCAAAAAAAGTCCAGCACCAGATGGATTCACAGCTGAATTCTACCAGAGGTATATGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATA<br>GAAAAAGAGGGTCTCCTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCCGGCAGAGACACAACAAAAAAAGAGAATTTTAGATATC<br>TCTGATGAACATCAATTCAAAAATCCTCAATAAAATACTGGCAAACCTAATCCAGCAGCACATCAAGAAGCTTATCCACCATGATCAAGTGGGCTTCATC<br>CCTGGGATGCAAGGCTGGTTCAACATACACAAATCAATAAGCGTAATCCAGCATATAAACAGAACCAACGACAAAAACCATCTGATTATCTCAATAGATG<br>CAGAAAAGGCCTTTGACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATCTCAAAACAATAAGAGCTATCTA<br>TCACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTA<br>TTGAACATAGTGTTGGAAGTTGTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGAAAAAGAGGAAGTCAAATTGTCCCTGTTTG<br>CAGATGACATAATTGTATATCCAGAAAAGCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAGGCAACTTCAGCAAAGTCTCAGGATACAAAATCAA<br>TGTGCAAAAATCACAAGCATTCTTATGCACCAATAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAA<br>TACCTAGGAATCCAACTTACAAGGGACATGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGATACAAACAAATGGAAGA<br>ACATTCCATGCTCATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCTCAAGGTAATTTATAGATTCAATGCCACCCCCATCAAGCTACCAAT<br>GACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAAGCAAAAAAGAGTCCGCATTGCCAAGTCAATCTTAAGCCAAAAGAACAAAGCT<br>GTAGGCATCATGCTACCTGACTTCAAACTATACTGCAAGGCTACAGTAACCAAAACAGCAAGGTACTGGTACCAAAACAGAGATATAGACCAAGTCAATC<br>TTGTCATATACCTAATGTTAAATGACAAGTTAATGGGTGCAGCACACCAACATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGTAC<br>CCTAAAACTTAAAGTATAAAAAAAAA</font><font color="green"><u>AGAAATACAAACT</u></font>gccatgagagaatactataaacatctctacacaaataaactagaaaatctagaagaaatgg<br>ataaattccttgacacatacaccctcccaagactaaaccagtaagaagttgaatctctgaatagaccaattaacaggctctgaaattgaggcaacaatta<br>atagcttaccaaccaaataaagtccagcaccagatgaattcacagctgaattctaccagaggtatatggaggagctggtaccattccttctaaaactatt<br>ccaatcaatagaaaaagagggaatcctccctaactcgttttatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagagaat<br>tttagaccaatatccttgatgaacat	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:KLHL32:NM:052904:3/11	
0	chr7	110484746	110484747	2000292	0	+	chr7-1100;1104685587671; RIP_L1_chr7_110_02	TTGCCCTTCATCCTATGGTT;GTGGGAGAAGCAGAGATGGA 	GGAAATGTGGAGTTGGGAGA;CCTACGCAGAAGACAGAGTGG	LINE	L1	L1HS	tgtgtatttagaggcatgtacaaaatgctaaaggagactagaaggaaacttcataaaagagataaacatggaactagatcttgtaaggacataagagaga<br>aaatgtttcagacagcagcaattgcaaaataatggagtcatagaagagttcagtatgaaatggaaaccaaaaaaagtttagcagttttgcacccagaaaa<br>aaagaaaacggagaagggtaagcttgtaacaaacggatgggggtcttttatatgctaaggtatttgcccttcatcctatggttaatcaataggggagctt<br>tcagatgtattcaagccagatgacactgtagtttagaaagataaatctagtcctacgcagaagacagagtgggagataaagcacttagtggcaggg<font color="green"><u>AAGA<br></u></font><font color="red">CAGTAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAG<br>AAA</font><font color="green"><u>AAGA</u></font>aacttctacagcagtccagaaggagagatggtgaagctacaacctaaaagacagcatggaaatggcaaggatggacagtttctctcccaactc<br>cacatttccatctctgcttctcccacaaccaactatggccaggaaatttactggtcacagggttccattacatgtacaccaaggacaacataaaagtcgg<br>tggagtcaaagtgcaattaagaggattgaaagggggggcccagaaaaagaggcccaggcacaaagtttcctacttcctcattttatctaggaaattggat<br>ggctcttttatttccaaactctcatcagctgggaaagatttaaaaagtagcatgtgtcataactccaatatttcaatctaaaatccaaaaaagcagctgc<br>ttc	Other;Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	64;55	346;275	248;177	NA;NA	intron:IMMP2L:NM:032549:5/6	
0	chr8	83740694	83740695	2000293	0	+	chr8-8390;1104685024888; RIP_L1_chr8_083_01	TACTCATGGTCTCAGGACACC;GCAGTCAGATTTTTCTTCCAAAA 	GGTCATGTGAGTGAATGTTTGTC;TGCAAACCAGTCAGAGTGAAA	LINE	L1	L1HS	aaaaaaaacctactcacttaagcagaaaaaatgcccttgaactatgcgcttgttttattagaaatattcaatgaactgtgctctaaactaataaattttc<br>tagttttctcttgtactcatggtctcaggacaccgaaggcaaagagtttatattttgagattttttaccaaaataaaaataatggccctattgtattcca<br>attctgtaaatgaaaaatcttacacataaagcagaaataggaaatgattccaaaactggaatattattaatacattataaatatattacatattttaatt<br>caaaattaatctgcaaaccagtcagagtgaaagagagtaaaaacatgaatttttattgagtattggcaatagatttaagcacttt<font color="green"><u>AATTATAATGAATGC<br></u></font><font color="red">TGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGT<br>GTTCCTATTTCTCTGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGA<br>TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTTGC<br>CCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAA<br>ATTTTCTCCCATGTTGTAGGTTGCCTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAATATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGAAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTCCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTATAATGAATGC</u></font>attatttattccaaaaaatgttcgctaatgtttaaat<br>actactacatgcaaatgtcttgtatgaactatagaaaaatcaagtgagagtgacaaacattcactcacatgacctttgttttctgtagatactaatctca<br>aattttagttctctgaatttgaaaaaaatttttacaggctttttaagccaatatttttagacaagattttggaagaaaaatctgactgctttactgctca<br>aagaattttttttttaattttagaaaaaaaaatccttgaagaagaaataaaaggcttcagaagtcattgatacttttgactgtgactttaagttgttttg<br>atctacttcttaagtctatatctcttggaagctggctggattaagtgt	Other;Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	64;55	1250;1278	398;315	NA;NA	intergenic	
0	chr8	87315034	87315035	2000294	0	+	chr8-8738; RIP_L1_chr8_087_01	TCAGGGTCCTATTCCTACCA	AACCCCATTGAACTTAAGCAAA	LINE	L1	L1HS	ttttgtatttttagtacagacagggtttcaacatgttggccaggatggtctctatctcctgacctcacgatccgcccatctcggcctcccaaagtactgg<br>gattacaggcatgagccactatgctgggcctattattgctattttaaaattcattcaaataataaataaaaggttaaagtaaaaagtgcctcacttttaa<br>cttataacacagtaaataatataggtagctacaaccaacattggtgaatgaggacccactttggggtcctcaataatctttaagagtgtaaagatttctt<br>aagaccaaaaagcttgagaaccacctatctagaggatatttatcagggtcctattcctaccatagacaagctgaaacaaagagaatcttgagc<font color="green"><u>AAGGAAA<br></u></font><font color="red">CGTAGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAA</u></font>tgaatggaatgacatcactttgagtcagtagcatcctgacaaggcagctcaatgccat<br>gagcccatggttgtgtgtcctctgagcttctccagttcttgtccattctcaggcccagctttcctgaataaatttcctatctttccaataaattgacttt<br>gcttaagttcaatggggttaatttctgttgactgcaatcaaatcatgctaatgaacacaatgtttagtaatatcctttttaaagttgtgtctgaaatctt<br>tcatttatagttcaaactcttttttgagttatttcctcaaactcaaggaggaaagttgttgtgggggggccacagcaacaaatgggaaatttaattggaa<br>aatccaattctgctctccctgggctactttaaacc	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	378	250	NA	intergenic	
0	chr17	28398305	28398322	2000295	0	+	chr17-2542;1104685085786; RIP_L1_chr17_025_01	GACCCCTAGACTATGAAACTAC;CCTCGCCAGCATTTGTTATT 	ATAGCCATTCTAGCCAGGGTG;TGACCTTTCCCATCCCAGTA	LINE	L1	L1HS	ttgcaatgagccgagattgcgccactgcactccagcctgggtgacagagcgagattccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcaattt<br>aaaatggatcaaagacttaaatgtaagacccctagactatgaaactactgaagaaaacatgagggaaacacttcaggacattggtttaggcaaatatttt<br>atggggaagacctcaaaagcacaggcaacaaaagcaaaattagacaagcgggattctatcaaacttttaaaaagcttctgcagtgcaaaggaaacaatca<br>atggggtgaagagacaacttgcagaaggggagaaaatattttcaaactattcatctgacaagggattaatattcaaaatatataaggaactcaaac<font color="green"><u>AAAG<br></u></font><font color="red">CAATTATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAA<br>AAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAAT<br>TGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAACCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATA<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAGAA</font><font color="green"><u>AAAG</u></font>aaaaatcaaataattcaaatttaaaatgggtaaatgagctgaatagacatctctcaaaa<br>gaaaataaaaatggccaacaggtatttgaaaaaatgcttaacatcactaatcagggaaatacaaatcaaaaccacaatgaagtattatctcaccctggct<br>agaatggctattactaaaaagacaaaaaataacaaatgctggcgaggatgcagacaaagggaaactcttataccttgttggtgggatgtaaattagtaga<br>gccactattgaaaacagtatagaggtccctcaaaacactaaaaacagaactaccatatgatctaatctcactcaaagtatatatccaaaagaaaggaaat<br>aagtatgttaaagagatttctacattcccatgtttat	UCSC;Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA;NA	60;55	1685;2698	466;1473	NA;NA	intron:EFCAB5:NR:026738:14/16	
0	chr1	144578297	144578453	2000296	0	-	L1-1-8;L1-1-12; RIP_L1_chr1_142_01	NA	NA	LINE	L1	L1PA5	gaacagctttaaatttggtttctcaaatgtctgtctaatggtttacaaaagtccagttactcaaatgaatttatcttacagtccggttttctattgttcc<br>atgctgtgcctcagtgacataaaccaagagtcagtatataaaaaagatttattcccactggtttataaccaaccaataactagtatgcctgttatatata<br>gttctgtgcattgggttgccagtctccttccttcttttgcctgatttttgttggaagtggagatgatgtaatgttatgggtcacttctattagtgtccct<br>ggactacagttctaccatctattttttaagctattttacctcgttattataagatctgcatatttgtgagcatcatttatgttattaat<font color="green"><u>AGTTAACATCT<br></u></font><font color="red">GGGGGGGTGGGGGAGGGATAGCATTAGGAAATATACCTAATGTAAATGATGAGTTAATGGGTGCAGCACACCAACATGGCACAGGTATACATATGTAACA<br>AACCTGCACGTTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAAAAA</font><font color="green"><u>AGTTAACATCT</u></font>atggtagtcacttctttggttatgtcagagac<br>taaaatctgaaaatcagaaattcattctttatttcaggtgtgtgcatgctgttgtgttgatccctctcccctcccagaaaagtcattgtaggcccaagtc<br>gatgaagggacagactgtgaaagaacagatgcagagcatggactaagtatgcagtgcctactgaatcaaaaactttgctgaagttgcttttctgcgattg<br>tctaacattcctctgagtcaccttatctgctgcttaaaagccccaaagcattttcttaactgtcttgtggccattgttataaactctgctctgctcttcc<br>tgtgtcaactaccacacagtctgtttcattgcatggccctaaaggcagagccatttt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr1	243054961	243055401	2000297	0	+	L1-1-9; RIP_L1_chr1_239_01	NA	NA	LINE	L1	L1PA2	acagatttgctgtctatgtgctttgccaaacagagagagacaggggccattgagacatgatgaaaacagcttcttctgagacgggggaaaagaaaaataa<br>gaaatatgaacaaccacagtaggtccagcaacctttccacaaagccaggcactcaggagccacctgtcatgtcttaggccatttcgttcctacaagaacc<br>tcactgagattcatcttactactccacttttcagaggtgcaagttgaggctcagaaagctgcagtggcatccctagacacagctagtaggtagtagggtg<br>tgccttgaaagaaacagacactcgcctgctgaacagctgctccaggtgtagcaggacaagccgcagacaaaacccctcagacactgagtt<font color="green"><u>AAAGAAGTAA<br></u></font><font color="red">AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGGAAACTATCTACAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGTAA</u></font>gggctttattcggccgggagcttcggcaagactcacgtctccaacaacc<br>gagctcccagagtgagcaattcctgtcccttttaagggctcacaactctaagggggtctgcgtgagagggtcgtgatccattgaccaagcaggcggtacg<br>tgactgggggctgcatgcaccagcaattagaatggaacagaacaggacagggattttcacagtgcttttctatacaatgtctggaatctgtagataacat<br>agccgattaggtcaggggtcgatctttaactaccaggcccagggtgtggcgccgggctgtctgcctgtggatttcatttctgccttttagttcttagttc<br>ttctttctttggagacagaaattgggcataagacaatatga	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr1	86740987	86741697	2000298	0	+	chr1-8645; RIP_L1_chr1_086_01	GTAGACTAAGTCCAATGCAACAG	GAGAACTTCCAAACCCAGTG	LINE	L1	L1HS	gtattgataaaatccctcagcttttgtttgtttgggaaagtatttctccttcatgtttgaagaatattttcactggatatactattctggggtaaaagtg<br>ttttttttctttcagcactctctcctggcctgtaaaatttgcactgaaaagtctgttgccagacgtattggacctccattgtaggttatttgcttctttt<br>atcttgctgcttttaggattctttctttacccttgacctttgaaagtttgactattagatgtcttgaagatgggtctggtattgatgaaatccctcagct<br>tttgtttgtctgggaaagtatttctccttcacgtttgaagaatattttcctggatatactattctggggtaaatgtgtttaacttctttaagtt<font color="green"><u>AAATCT<br></u></font><font color="red">ACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTA<br>AACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCC<br>AAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCA<br>ACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGA<br>TGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACA<br>TGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACA<br>TTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAATCT</u></font>gcttggtattctataaccttcttatacttagatcttgatatctttcactgggtttggaagttctctgttactatctctttgaa<br>taaactttctacccctatctctttctctacctcctcttaaaggccaataactcttagattttcccttctgaggctattttctaaatcccacaggcaagct<br>tcattgttttttattcttttttttcttttgtctcctctgactgtatattgccaaatagcctgtcttcaagctcactaattctttcttctgcttcatcaat<br>tctgctattacaaggctctgatgcattcttcagaaagtcaattgcatttttcaactccagaatttctacttgattcttactaattatttcaacctttgtt<br>agatttatctg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	64	1655	938	NA	intergenic	
0	chr1	56831125	56834961	2000299	0	+	chr1-5654; RIP_L1_chr1_056_01	CTGTAATGAAAGGGCCCAGA	TTTCGCCATCAATCTTTGAG	LINE	L1	L1HS	gaagagttccctcttgcttgggggacatgagtcttttgttttattcaggccttcgactgattggatgaggcccattcacattaaggagggtaatctgctt<br>catgtaaagtctacagatttaaatgttaatctcatccaaaaacatcctcaaagaaacctccagaataacgtttaaccaaatatttgggcactgtgatcca<br>cccaagctgacatataaaactaaccatcagagactccaatagatgaagatagagacagaaatacatatacatacatttatttattttagctctgtaatga<br>aagggcccagaagcaatgataccccagtagcagagagcacatattatgtctacatcttgatttctaaataccattctccact<font color="green"><u>AAAAAGAACCACTGCCTC<br></u></font><font color="red">GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATGTGGAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAATGAACAGGCAACCTACAAAATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAACCACTGCCTC</u></font>ttagagaaacagctgattctggctctggggcaaagaaaatataag<br>gtaagtcgagaatctcttgttgtcagaaaacaaagaggtactcaaagattgatggcgaaatatcaaaagaacataggaattggtttgaaggaattcccac<br>tggtcaaatcaattgggaaatcaaaaagaatagtgataataattcacagtccacttaagaataagaaagaaagaagaatccataagatcatgataataaa<br>tataaaatttaaagtaggaaagaaggaagttgttctttgaaatagttactactaggaaaaggaggaatattgggttcaactctatggtcttcaagttttt<br>tctttttaagtgaaagcaagtttattaaggaagtaaa	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	4069	214	NA	intergenic	
0	chr2	176346683	176352721	2000300	0	-	chr2-1761; RIP_L1_chr2_176_01;AC217067	CACACGCATTTACACTGAAGC;NA	CAGTCTAATGGGCATGACAAAA;NA	LINE	L1	L1HS	acttgggcaattatactgtgcctcaattattttatctagaaaatggctactataatgatgatgataataataataataatatcacttattttatgtgact<br>gttatcatggttaaacaagttatttctccccttctctcaactagatatttaaatacacatgtactctaaataccaaccatgacaggtagaattcagtgta<br>ttttctttaacctaaatgccctctttcaagcaaatgactttttcattaatggcttcataatttcatgttttgagctgccaaatatgtttcttgtttcaca<br>cgcatttacactgaagcattgaaagaatcctttagctctacaaccatggtgacttgataccagcacaatcagtttggaagtttttt<font color="green"><u>AAACATTTATTTTG<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAAGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGCA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>TCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCCGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGACAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGGTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGAATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACATCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGGTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAAATAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATTGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAAAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCACAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACATTTATTTTG</u></font>cactctgagtgatatcaaaatacctttagagcagttaacttagtttg<br>tatatattcatttgagtgacaataatgttttgtcatgcccattagactgtttctagtttcaatcacaattatatcaccagccttaatactcaataaatac<br>ttgttaattaaatggatcaatgaataaattttaaaaagcagactgatatgttttgctaaagttacttgtcagtcaaatgctcttttttaaaaaattatat<br>ctgaatcatacctgaatcctgaaagtctgatttcagagtttagaatttttcagaatttataatttttttcatttttgaaaagttaatactctatacatat<br>tttatatcatatgacatctacatcagggcctgggcacaa	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	63;NA	6253;NA	200;NA	NA;NA	intergenic;intergenic	
0	chr2	97836012	97837484	2000301	0	+	L1-2-14; RIP_L1_chr2_097_01	NA	NA	LINE	L1	L1PA2	caatgctatagactaccattgactttcttcacagaattagaaaaaactactggaaatttcatatggaacaaaaaaagggcccatatagccaagacaattg<br>taagtaaaaagaacagagctggaggcatcacgctacctgacttcaaactacactacaaggctatagtaatgaaaacagcatggtacagctaccaaaacag<br>tgatatagaccaatggaatagaacagaggcctcagaagcaacaccatacatctacaaccgtatgatctttgacaaacctgacaaaaagcaatcagtgggg<br>aaaagattacctatttaataaatgatgttgggaaaactggctagccttatgcaggaaactgaaactggaccccttccttacaccttat<font color="green"><u>ACAAAAATTAAC<br></u></font><font color="red">GGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGCTATAGATCAATGGAACA<br>GAACAGAGCCCTCAGAAATAACGCTGCATATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAA<br>ATGGTGCTGGGAAAACTTTCTACATAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTCATACAAAAATCAATTCAAGATGGATTAAAGA<br>TTTAAACCTAAAACCATAAAAGCCCTAGAAGAAAACCTAGCCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAA<br>TGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAATACAAAAT<br>GGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT<br>CAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGA<br>GAAATGCAAATCAAAACCACTGTGAGATACCATCTCACACCAGTTAGAATGGCAGTCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAG<br>AAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACC<br>ATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTC<br>ACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGATTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAA<br>AAAATGATGAGTTCATGTCCTTTGAAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATT<br>CTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGA<br>TAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCA<br>CATGTACCCTAAAACTTAAAGTATAATTAAAAAAAAAAAGTGTTCTGTAAAAAAAAAAACAAAAACAAAAAAA</font><font color="green"><u>ACAAAAATTAAC</u></font>tcaagataaattaaa<br>gacttaaacgtttaagtgagacctaaaaccataataaccctagaagaaaatctaggcaataccattcaggacattggcatgggcaaagacttcatgacta<br>aaacaccaaaagcaatggcaacaaaagccagaattgacaaatgggatctaattaaactaaggaacttgtgcagttttatttgggagtgtgcatgaggtac<br>ctctgagtttcaaaaatgaagaaagtaagtggtcatgctttcctgactctttggtagacacagccttttaagacggtgattctgagctgttacggttttg<br>ggtttcctataatactgaagcttactgctgacatgtaatcaagagcttgaattaatttaaaaaaatcacccaa	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:ANKRD36:NM:001164315:22/76	
0	chr2	196051832	196052085	2000302	0	+	chr2-1958; RIP_L1_chr2_195_01	ACAGTGTCCTACAGCAACCAG	GACCACCAGCTGTCACACAC	LINE	L1	L1HS	cctcctatttggaattagtttcagcaatgagttcctccagcttctaaaatgtcctgccattcctcatctttcatctttcatctttgtcttgcgcagatgc<br>cttccattttcccactcatttcacgcaacctcagataggattctacatcctgactgactcctcagaactcaattactgaccctaaggcctccactgagtg<br>gttattatgggaattagctgatataattataataaatatgaagcatttttcactatgtaaggaacatcaaagacactcaattaatggcaactgctactag<br>atacagtgtcctacagcaaccagcaaccagttgtaaagtaaaagcaaactgatgcaaataattgctttgttgaccaacagctt<font color="green"><u>AAAAAATAGGTTGGCTG<br></u></font><font color="red">CGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGCAAGGGGAATATCACACTCGGGGGACTGTGGTGGGGTCGGGGGAGGG<br>GGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACTTATGTAACTAGCCTGCAC<br>AATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAACATTAAAA</font><font color="green"><u>AAAAAATAGGTTGGCTG</u></font>ttttatttttatttaattagctaagcatt<br>tagtgtcacaaacagaatcaatatcagtgtgtgacagctggtggtcacccttatgttcattatgtttttatataggaacaattttcacatctgcagaaaa<br>aaaaaggaggcattagagagaaaagttgaatataagtagggtaagcatatgtcctcattacttgtgacagtaccagtgaatacctgttatcctagcatta<br>ttattaatagtggccagtttcactctccatcatggcattatccaactgaattttctgtggtgataaaaatgttctctatccaggctacccaatatggtag<br>ctactagtcaacgtggctattgagccttcaaaatgtgactaatgcggctcaatt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	64	444	174	NA	intergenic	
0	chr2	97840284	97844567	2000303	0	+	L1-2-16; RIP_L1_chr2_097_02	NA	NA	LINE	L1	L1PA2	acattatttcattgatgtgtatgtttttgcaaaagtggacgaagagacagtgagaaagtcgaactgctgaatccaggaaatgtaaaaacatcaggagtct<br>tcatgagtataaataaaatgatttttaaaattataactcttagattaagtgaactcacttcagatgcatttagaatatttgcataagggatgatttgatt<br>tttggctgctccaggaactactggaagcaggaaagagtgatagaattgggataaaccacagtgactcattgctcctctttgttaccattgggcaccagag<br>gtatatgttttgttgacattggttattcaaatgagataaacgtgaatatgcatacattggctttgtttttcaaggagctattggat<font color="green"><u>AAAATAGCAACTTA<br></u></font><font color="red">GATATATAATCATGTCATCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTAATTGCCCTGGCCAG<br>AACTTCCAACACTATGTTGAATAGGAGTGGTGAGAAAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATG<br>ATATTGACTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATATGTCCCATCAATACTGAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAA<br>TTTTGTCAAAGGCTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCATATATT<br>GAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGTTTTGCCAGTATTTTATTGAGGATT<br>TTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTTGTTGTGTCTCTGCCTGGCTTTGGTATCAGAATGATACTGGCTTCATAAAATG<br>AGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCTTGTACCTCTGGTAGAATTCGGCTGTGAATCC<br>ATCTGGTCCTGGACTCTTTTTGGTTGGTAAGCTATTGATTATTGCCACAATTTCAGATCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTT<br>AGTCTTGGGAGAGTGTATGTGTCTAGGAATTTATCCATTTCTTCTAGATTTTCTAGTTTATTTGCGTAGAGGTGTTTGTAGTATTCTCTGATGGTAGTTT<br>ATTTCTGTGGGATCGGTGGTGATATCCCCTTTATCATTTTTTATTGCGTCTATTTGAATCTTCTCTCTTTTTTTCTTTATTAGTCTTGCTAGTGGTCTCT<br>CAATTTTGTTGATCCTTTCAAAAAACCAGCTCCTGGATTCATTAATTTTTTGAAGGGGTTTTTGTGTCTCTATTTCCTTCAGTTCTGCTCTGATTTCAGT<br>TATTTCTTGCCTTCTGCTAGCTTTTGAATGTGTTTGCTCTTGCTTTTCTAGTTCTTTTAATTGTGATGTTAGGGTGTCAATTTTGGATCTTTCCTGCTTT<br>CTCTTGTGGGCACTTAGTGCTATAAATTTCCCTCTACACACTGCTTTGAATGTGTCCCAGAGATTCTGGTATGTTGTGTCTTTGTTCTCATTGGTTTCAA<br>AGAACATCTTTATTTCTGCCTTCATTTTGTTATGTACCCAGTAGTCATTCAGGAGCAGGTTGTTCAGTTTCCATGTAGTTGAGCGGTTTTGAGTGAGATT<br>CTTAATCCTGAATTCTAGTTTGATTGCACTGTGGTCTGAGAGATAGTTTGTTATAATTTCTGTTCTTTTACATTTTCTGAGGAGAGCTTTACTTCCAAGT<br>ATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAATGTATATTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCCACTTG<br>GTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTCTCTTGTTGATCTGTCCAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAAT<br>GTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTCAGGACTTGCTTTATGAATCTGGGTGCTCCTGTATTGGGTGCATATATATTTAGGATAGTTAGCTCTT<br>CTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGGTTAAAAGTCTGTTTTATCAGAGACTAGGATTGCAAC<br>CCCTGCCTTTTTTTTGTTTTCCATTTGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGTCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAAT<br>ACAGCACACTGATGGATCTTGACTCTTTATCCAATTTGCCAGTCTGTGTCTTTTAATTGGAGCATTTAGTCCATTTACATTTAAAGTTAATATTGTTATG<br>TGTGAATTTGATCCTGTCATTACGATGTTAGCTGGTTATTTTGCTCGTTAGTTGATGCAGTTTCTTCCTAGTCTTGATGGTTTTTACATTTTGGCATGAT<br>TTTGCAGAGTCTGGTACCGGTTGTTCCTTTCGATTTTTAGCGCTTCCTTCAGGAGCTCTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAGCATTTG<br>CTTGTCTGTAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGGCTGGATATGAAAATTGTATATCTAGAAAACCCTATTGTCTCAGCCCAAAA<br>TCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAG<br>AGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGAACTCTTCAAGGAGA<br>ACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGCATAGGAAGAATCAATATCGTGAAAATGGCCAT<br>ACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGCCTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATAGAAC<br>CAAAAAAGAGCCCACATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAA<br>CCAAAACAGCATGGTACTGGTACCAAAACAGAGCTATAGATCAATGGAACAGAACGGAGACCTCAGAAATAATGCTGCATATCTACAGCTACCTGATCTT<br>TGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAAAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGTATC<br>CCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGCCATTAC<br>CATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAGATGGGATCTAATTAAACTAAAG<br>AGCTTCTGCACTGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATAT<br>CCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGA<br>CATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTT<br>AGAATGGCCATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTC<br>AACCATTGTGGAAGTCAGTGTGGAGATTCCTCAGTGATCTAGAAGTGGAAATACCATTTGACCCAGCCATCCCATTAATGGGTATATACCCAAAGGACTA<br>TAAATCACGCTGCTATAAAGACACATGCACACGCATGCTTATTACGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATA<br>GACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGAAGGGACATGGATGAAATTGG<br>AAATCATCATTCTCAGTAAACTATCGCAAAAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAG<br>GAAGGGGAATATCACACTCTGGGGACTTTTGTGGGGTGGGGGGAGGGGAGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGATGAGATAGTGGGT<br>GCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCGCATGTACCCTAAAACTTAAAGTATAATAA</font><font color="green"><u>AAAAAAGCAACTTA</u></font>at<br>aaaaattctctagagaataacatgatactttaaccagactattttagaagtgaaaataatgttgaattcattacttgactcccaaatggttattttcagg<br>gaatattggagtgatttccagatgtaaaagcttattcatatctaatgcttgtagaaactttattttgtataagtatgtcaaatttggtaatttattacac<br>tttttgatgaagtttatatattataccttgttgcaatgagtggatgaaggaacttttagaagtctaaactagaagatacaagagatgtaggcacattatt<br>acatcatatgggtgtgagaaataatgaatattacatactagaattcaccaaacatatatccaagctgattaagttaggacactt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:ANKRD36:NM:001164315:22/76	
0	chr2	110554595	110554829	2000304	0	-	L1-2-17; RIP_L1_chr2_109_01	NA	NA	LINE	L1	L1PA2	gcaagactctgtcccataacaaaaacaaacaaaaaaacctctcatccacttttcctcaaagcaagtgagactatgctacaccaaaacaaagaaagtaaat<br>gaagaggacatgagatacaagaaacaaagggtctaactcagaaaaaagatgaagggaattctcaaactggtgataaagggaagtcccaagagcacagctg<br>tgtagcaaagaggaagaaaaaccaatccgggttggagaagttggttagtaagggtattccaggtagacagacaatcaatcaatcaatcagtgttttaagc<br>tgaaattgatgggattatctgaccagtttgaccacatttgagggtttaaattgctgagtttaagtaagcaagtagtaacacaacatacaa<font color="green"><u>GCAAACCAAA<br></u></font><font color="red">AAATAAAGCAATTATTCAGTCCAGGAAAACGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAACAACAAAAAACTGCACAACAAGGGCAATTCAAATGCAAAAATATTTACCTTCTATTTATATAAATGTTAACT<br>ATTCATTTAAACAAAAACTGCAGTAACAGTACTGAAAGAATGAGGG</font><font color="green"><u>GCAAACCAAA</u></font>gtgtctgaggacagttttggaggagcataatagccagtacagaa<br>tgtctaaaatggggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcatgaggtcaggagatcgagactatcc<br>tggctaacacggtgaaaccccgtctctactaaaaatgctaaaaaattagccgagtgttgtggcgggtgcctgtagtcccagctacaggctggggcaggag<br>aatggcgtgaaccccggaggcagagtttgcagtgagccgagatcgcgacactgcactccagcctggacgatagagcgagactccgtctcaaaaaaaaaaa<br>gaaaagaaaagaaaagaaaatgtctaaaatgggag	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:RGPD6:NM:001037866:2/20	
0	chr2	88206533	88206978	2000305	0	+	chr2-8804; RIP_L1_chr2_088_02	AAGCGGTATATTGTGCCTTGAT	AGCAGGAGTGATTCATCTGAT	LINE	L1	L1HS	ttatataataaaagtgctctttatagtaccttcctcataggaggtacctcttgattatttttaatgaatgcattagtacacctaaatcacctgcatatat<br>ttctgaaccctctaagcggtatattgtgccttgattttttaaaaacataataataacctgtaatcctagcactttgggaggcttaggcccagctattcag<br>gaggcttaggtgggaagagcacctgagcccagagaggttgaggctgcagtgagccatgattgcaccactgaactccggccttggtgacagagtgagacct<br>tgtctcaaaaaataaaaatacaagtataaaataatgatgcaatccctgccttctggtagcttacatttgataaattaagctg<font color="green"><u>AAAAGAATTGTGGGTATG<br></u></font><font color="red">CAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTA<br>GGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAA<br>TGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCT<br>AGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATTGTGGGTATG</u></font>aaataggaaacaagcagacaagttacatgagtcact<br>tagaacttgagttcttcttataatatgggttcaaattacctgttgccaggtttaaggtgaatcgtttaccatactgttttattttccatggtctaaactg<br>aaatgtatgcactaaggtcagagaaccaaatattagctttaattacacaatagatatattagagaatgccacagactttttactgttttcctacaagtct<br>aaaccttggcccctacatgtggggataattgggtctgcaatctagttgcttgcataatcctagcttgccttacagtgtagtgagagctccaggtaaagag<br>cacaagtgagcttcaacatttattcattttcccctcgcactgggga	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	1198	734	NA	intergenic	
0	chr3	82936659	82936957	2000306	0	+	chr3-8301; RIP_L1_chr3_083_02	AGGGGCCAGGTTACTTCCTA	GACAGGCATTGGATGATGTTC	LINE	L1	L1HS	gttgtgtgagcatgcataatcgaccatctaagtagaaatgctgaagtttgggactgaaaaggatggacagagaggggaggacatgaagaagggctgtcag<br>atttctgaaaatctacaggcgggaaataggcatacatggctattcggtcacaagcacatgttatccttccagaaaagaaaaggatgactccaaagatggt<br>tcagagtctggggtgggaggggttgctaatgcattcaaaggcctggagaatacagactcaaaggataggaccatatcttcctaaattccaaggggccagg<br>ttacttcctatggctgagtagccctagtgggcccagaacatgaggctaccacctggttgggcatggagaacagaacatcaggcccaagagggttgttc<font color="green"><u>TA<br></u></font><font color="red">GAACAAAAAACCAAACACCGCATATTCTCACGCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGT<br>GGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACA<br>TATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAGAAAAAAAAATAAA</font><font color="green"><u>T<br>A</u></font>aagtcttaatatctaaaagaatttgtcctgctaggttttagatttgcttgatgcccatgacccctttcttcctttcaatttctcccttttggaattgga<br>acatcatccaatgcctgtcttaagattgtatttttaagtagataatgtgtctggattcacagattttcagctggaaagaaatttagcttcaggatgaatc<br>atatcttgagtcttactcacaccttaaatagatgatatttaaatgagattattggatttagagttgatatagaatcagcaatgacttttcaggatgttga<br>aatagggtgaatccattttgcatgtgagaaggatgtatatattttaagggaaaagggagtggtgttgtgggttgcatggtgtttccctatgtttacttt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	529	228	NA	intergenic	
0	chr3	22092362	22097796	2000307	0	+	chr3-2206; RIP_L1_chr3_022_01;AC207303;AC222565	CCAGATGAACTCAGCAGTTTTT;NA;NA	ATCATCTTTGCCATGGTCTG;NA;NA	LINE	L1	L1HS	ctgggctttcctttgacaggaaatgtttcattattgatttaatttggttgttctttattggtctgttaagattttctatttcttcatgattcaattttgg<br>tagattgtatgtattgaacattgttttctaggttttaatttctgactaaatgtaacttttgatgaaatcattgaattgaccaaaggccacatatgtttta<br>ccagatgaactcagcagtttttaatgagttaatttctccgattttatctgattctgaaattatattaattcattgtgtattatgtatttgtttaaaaatt<br>gtatatttatattaaataaactaaacaatcaaaaataacgaatatctgttcctgactttcacaatctcttcacttttctgaccctta<font color="green"><u>AAAATTCAATGTG<br></u></font><font color="red">TTATAATTTCTGTTCTTTTACATTTGCTGAGGAGAGCTTTACTTCCAACTATGTGGTCAATTTTGGAATAGGTGTGGTGTGGTGCTGAAAAAAATGTATA<br>TTCTGTTGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCAGAGCTGAGTTCAATTCCTGGGTATCCTTGTTGACTTTCTGTCTC<br>GTTGATCTGTCTAATGTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCACTGAGGACTTGCTTTATGA<br>ATCTGGGTGCTCCTGTATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCT<br>TTTGATCTTTGTTGGTTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCT<br>TTTATTTTGAGCCTATGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCTGTGTC<br>TTTTAATTGCAGAATTTAGTCCATTTATATTTAAAGTTAATATTGTTATGTGTGAATTTGATCCTGTCATTATGATGTTAGCTGGTGATTTTGCTCATTA<br>GTTGATGCAGTTTCTTCCTAGTCTCGATGGTCTTTACATTTTGGCATGATTTTGCAGCGGCTGGTACCGGTTGTTCCTTTCCATGTTTAGCGCTTCCTTC<br>AGGAGCTCTTTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAACATTTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGG<br>CTGGATATGAAATTCTGGGTTGAAAATTCTTTTCTTTAAGAATGTTGAATATTGGCCCCCACTCTCTTCTGGCTTGTAGGGTTTCTGCCGAGAGATCCGC<br>TGTTAGTCTGATGGGCTTTCCTTTGAGGGTAACCCGACCTTTCTCTCTGGCTGCCCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGACAATT<br>ATGTGTCTTGGAGTTGCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAAGTTCT<br>CCTGGATAATCTCCTGCAGAGTGTTTTCCAACTTGGTTCCATTCTCCACATCACTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACATAGTC<br>CCATATTTCTTGGAGGCTTTGCTCATTTCTTTTTATTCTTTTTTCTCTAAACTTCCCTTCTCGCTTCATTTCATTCATTTCATCTTCCATTGCTGATACC<br>CTTTCTTCCAGTTGATCGCATCGGCTCCTGAGGCTTCTGCATTCTTCACGTAGTTCTCGAGCCTTGGTTTTCAGCTCCATCAGCTCCTTTAAGCACTTCT<br>CTGTATTGGTTATTCTAGTTATACATTCTTCTAAATTTTTTTCAAAGTTTTCAACTTCTTTGCCTTTGGTTTGAATGTCCTCCCGTAGCTCAGAGTAATT<br>TGATCGTCTGAAGCCTTCTTCTCTCAGCTCATCAAAATCATTCTCCATCCAGCTTTGTTCTGTTGCTGGTGAGGAACTGCGTTCCTTTGGAGGAGGAGAG<br>GCACTCTGCGTTTTAGAGTTTCCAGTTTTTCTGTTCTGTTTTTTCCCCATCTTTGTGGTTTTATCTACTTTTGGTCTTTGATGATGGTGATGTACAGATG<br>GGTTTTCGGTGTAGATGTCCTTTCTGGTTGTTAGTTTTCCTTCTAACAGACAGGACCCTCAGCTGCAGGTCTGTTGGAATACCCTGCCGTGTGAGGTGTC<br>AGTGTGCCCCTGCTGGGGGGTGCCTCCCAGTTAGGCTGCTCGGGGGTCAGGAGTCAGGGACCCACTTGAGGAGGCAGTCTGCCCGTTCTCAGATCTCCAG<br>CTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACAGGGACACTTAAGTCTGCAGAGGTTACTGCTGTCTTTTTGTTTGTCTGTGCCCTGCC<br>CCCAGAGGTGGAGCCTACAGAGGCAGTCAGGCCTCCTTGAGCTGTGGTGGGCTCCACCCAGTTCGAGCTTCCCGGCTGCTTTGTTTACCTAAGCAAGCCT<br>GGGCAATGGCGGGCGCCCCTCCCCCAGCCTCGTTGCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGATTCCGTGGGCGTAGGACC<br>CTCCGAGCCAGGTGTGGGATATAGTCTCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAAT<br>CAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCG<br>CTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTA<br>CCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCA<br>GGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTC<br>ACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTT<br>ATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCT<br>CAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATA<br>CGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAAC<br>AACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACT<br>GAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCC<br>AGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAA<br>ACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATA<br>CACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGAT<br>GTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAA<br>TCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAAC<br>TACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAA<br>CTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGC<br>ATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCAT<br>ATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACC<br>CTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACA<br>AATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTA<br>CTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATG<br>AACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTA<br>TGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTG<br>TTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTA<br>CTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACC<br>AACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTT<br>TGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGA<br>ACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAA<br>TGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGT<br>ATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTCAATGTG</u></font>atacagatacctagagagtacagtaagaatgggataaaatataaaccgtgtg<br>ttagtttaggggctgtctattacagaccatggcaaagatgataagctaaaattccatcaaggatcatttaggtgggaatgtcaccaggtgaaagataccc<br>aagataaaactgtagtgagtattaggatccatgacccgttatagggtgtacatcttcctaaagccattccaattaaacagaaaagaaagtttaaaaatgg<br>ttctgaccaaaaaacaaaacaataaaacaaaaagaactctacaaatcaaattcagctggtgcagtttgacagttttaattcaaaactattgttcagtgta<br>catcagctattgccataataatgctgtgtaacaat	UCSC;UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	60;NA;NA	5742;NA;NA	294;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr4	152340723	152341552	2000308	0	-	chr4-1526; RIP_L1_chr4_152_01	GCTTGGAAGAATGCACATCA	TCGGTGCTCTGTGCAAATC	LINE	L1	L1HS	taggttgatcttagtgctttaaaaatatcagtaatcactcactggcaacctactaagcaaaagaaaagcaacactaggaacagtggagggatgtggaaat<br>acagagttaggctccagtcctaaaggagtttataatctaattgggaagaaggacaaatgtataaaagataacactggatggcagcaaatgactaaattcc<br>taaaatttcagtatggagattcaggtgccaggaaactactacaggaaaagacagccaagaaagattttatggaggacacagctctgaactaggcttggaa<br>gaatgcacatcactaaaataactggaaagaggaaggactggtctcaacaaagatggggaaaaaggaagaggtagggtgtgttc<font color="green"><u>AAGAATGAGGAACAGAC<br></u></font><font color="red">ACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATA<br>TCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGG<br>GACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTA<br>TATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAA<br>ATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGG<br>ACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGA<br>GATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGA<br>TGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAGCCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAGGAACAGAC</u></font>cagcatggcagtcaaagcaaaggatttgcacagagcaccagatcataaatgcc<br>ctgagaatcagccaatggttctccagagaaacagaaccagtaggagatgtatgtgtgtgtttataaagagacttattataaggaagtggcttacgcaatt<br>atagaggccaagaagtctcaagatctgcagtcagcaagctggagacccaagagagacaataacataagttatagtttgagtctgaatctgaaggcaggag<br>aagaccaatgtcccaggttgaaaacagtcaaacagagagagagagaggagagtgaattctcccttactcagtctttttgtactactgaagccttcaatag<br>actgaataagacccatccacactggggagg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	997	150	NA	intron:FAM160A1:NM:001109977:1/14	
0	chr4	139468854	139473222	2000309	0	+	chr4-1398; RIP_L1_chr4_139_01	ATAGGCGTGGGCAAAGG	CTAATTTTCATTCCCACCAATG	LINE	L1	L1HS	catataaaacaagggaacagaacagagacctcagaaataacaccacacatctacgacatctgatcttcaacaaacatgacaaaaacaagcaatggggaaa<br>ggctctcctgttaaataaatgatgctgggaaaactggctagccatatgcagaaaattgaaactggaaccttgccttacaccttatgcaaaaattaactct<br>agatggattaaagtcttaaatgtaaaacccaaaaccacaaacaccctagaagaaaccctaggcaataccattcagtacataggcgtgggcaaaggcttca<br>taacggaaatgccaaaagcaattgcaacaaaatccaaaattgacaaatggcatctaattaaactaaagagcttttgcacagc<font color="green"><u>AAAAAAAAAAAAAAAAAA<br></u></font><font color="red">TTATCATCAGAGTGAACAGGCAACCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTG<br>AAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGA<br>AAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCT<br>AACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGA<br>TAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCA<br>AGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTAC<br>ATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTG<br>ACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACAACCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGA<br>TACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCA<br>CACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACA<br>GTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAA<br>CGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGG<br>AAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACAC<br>ATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAG<br>CTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAA<br>GGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATA<br>CATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAG<br>TTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAA<br>TCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGAAGAGACACAACCAAAAAAGAGAATTTTA<br>GACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGT<br>GGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATC<br>TCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAA<br>GAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTC<br>ACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTG<br>TCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGAT<br>ACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAA<br>GAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAAC<br>AAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCA<br>AGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAA<br>GAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGAT<br>CAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCC<br>TATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGAT<br>TAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAA<br>ACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACA<br>GGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAA<br>AACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCA<br>TCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCT<br>GGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCT<br>AGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTT<br>ATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAAT<br>ACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAAC<br>CAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGG<br>GGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAA<br>CCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAGA</font><font color="green"><u>AAAAAAAAAAAAAAAAAA</u></font>gagtgaacaggca<br>acctacagaatgggagaaaatgtttgcaatctacccatctgacaaaggtctaatatccagaatttacaaggaacttaaacaaatttacaagaaaaaagca<br>aacaaccccatcaaaaagttggtaaaggatatgaacagacacttctcaaaagaagacatttacatggccaacaaacatatgaaaaaagttcaacatcact<br>gatcattagagaaatgcaaatcaaaaccaaagtgagataccatctcacgccagttaaaatggcgattattaaaaagtcaagaaacaatagatgctggaga<br>ggctgtggagaaacaggaacacttttacacattggtgggaatgaaaattagttcaaccattgtgaaaga	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	4873	495	NA	intergenic	
0	chr4	124943568	124945186	2000310	0	-	chr4-1253; RIP_L1_chr4_125_01	TCAGTGATCTGCCCATCTTG	TTTGGCACATCCTGAACATT	LINE	L1	L1HS	gaaaatacattcagattatagcactagtctgtaagtagataagtagatggtgcacaataaataataactttttttcaagatggaatctctctctgtctcc<br>caggttggaatgcagtggcatgatactgtaacatccgcctcccaggttcaagcagttctcctgcctcagcctcctgagtagctgaaattacaggcacctg<br>ccaccatgcccagctaacttttttgtatttttagtagagatggggtttcacatgttggccaggctggtcttgaacccccaaccttcagtgatctgcccat<br>cttggcctcctaaaatgttgggattacagacatgaaccactgcacctggcccacaataaataattgttaaattgaaattctaatc<font color="green"><u>ATAAAGTATGTAATG<br></u></font><font color="red">GCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATTTCCTTCGCCCACTTTTTGATGGGGT<br>TGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGT<br>AGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCT<br>TTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTA<br>AATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGCGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTT<br>ATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGTGGCATTATTTCTGAGGGCTCTGTTCTG<br>TTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG<br>CTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT<br>TGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCT<br>CACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGT<br>AAACTAGTTCAACCCTTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACC<br>CAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCC<br>AACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGG<br>ATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCAC<br>TTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACAT<br>GTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACACTAAAACTTAGAGTATAATAAAAAAAA<br>TAATAATAATAAAAAAAAA</font><font color="green"><u>ATAAAGTATGTAATG</u></font>caaagatatcttacgcagtattaaagtatatgcagaagtcattgatcttcttcaaaataaagaata<br>aagtaacttttattgaatgttcaggatgtgccaaacatattctaaggattctgcaaacattaagtctttagataatgctgtgagataaggaaacacttta<br>cggatgaaaaaactgaggcttggagagattaatataattgccccagattacacctagtaaggagtctatattaattacttgtagctgctgtaataaagta<br>acacaaacttggtggattacaaaaacagaaatttattttctttaattattggaggcccagagtctgaaaacactatcgctgtgccaaaatcaaggggtga<br>cagggccgccctgtctcca	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	1851	217	NA	intergenic	
0	chr4	102787779	102788352	2000311	0	+	chr4-1031; RIP_L1_chr4_103_01	TCGAACTGTAGAAAACTGAAAACAA	GAATTTTAGATTGGTGGGTTCC	LINE	L1	L1HS	ataggtttactagtagagttgacaaaggtcagaaaagaatcattgaatttgaagacaggtcaatgaaaacttcccaaacttaaatggtaaagagaaaaaa<br>gtttttttgtctgtttgttttttaaagaaaggacaaaacatctaagaaatgtgggatgatttcagaaggtctaacatacatgtaattggaatacaagaag<br>aatgacaaaatgaagcacaataaatattcgcatattaatgacagatcaaaatacagatataggaagctcaagtaacatgaagaaagataaatataaaata<br>ttgacacctattcatattacattcgaactgtagaaaactgaaaacaaaagagaaaatcttgtcagaagccagagaaaacgaataccttacctgtag<font color="green"><u>AGAA<br></u></font><font color="red">ATGAGTATAGGAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGT<br>TTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGA<br>ATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAA<br>ACCAAACGCCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTC<br>GGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACT<br>AACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAATTTAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA</u></font>ttacgttgaatttctcttcaga<br>aaccacacaagcaagaaaatagtggagtaaaatattttaagtattgtgaaaaaaaggaacccaccaatctaaaattctatattcagtgaaattatcctta<br>atatagaatgaagtagaaataaggattttttcaaacagaaaaatgaaggagttcattaccagcagacctgccctgcaagaaattttaaaagaagttcttt<br>gggaaagaagggaaataatgtaggtcagaaacttagatctacgtaaagaaagagcatagagaataaatgaatgaaggtaaaaacacaatatttcattttc<br>cttatttttaattgatctaaaagataaatgtgtgtctgaagtaaacactgtcaatgtgttgggtgattacagca	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	755	190	NA	intron:BANK1:NM:017935:4/17	
0	chr4	70239840	70240253	2000312	0	+	L1-4-25; RIP_L1_chr4_070_01	NA	NA	LINE	L1	L1PA4	agcaaacttagatccagacccttgacagtttactgtgatttctagtgaggacagctgccctcaactttttagtatccattcttgaactcttctggtatta<br>tagattgagaaattcccttggtcacctatctgttttgtccctagtgctatcttctctattactatgtacacagctttctaaattaggtctttctggataa<br>caccccagtcttagtactcatgtgtattatgactatctcccttctgaaggtctctattatttcaatatctgatcataaatcgtatcagtgagattggttt<br>ggtgagtcaaaaaagacctatcaaaggatagacatgttgaacattcattacaactagcaaatatttgatagatttccagcactgtat<font color="green"><u>AAGATGTCTATGT<br></u></font><font color="red">CCAACAACGATAGACTGGATTAAGAAAATGTAGCACATATACACCATGGAATACTATGCAGCCACAAAAAATGATGAGTTCATGTCCTTTGTGGGGACAT<br>GGATGAAATTGGAAACTGTCATTCTCAGCAAACTATCGCAAGGAATGTAAACCAAACACCACATGTTCTCACTCATAGGTGGGAATTGAACAATGAAAAC<br>ACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGAGGGGGGAGAGATAACATTAGGAGATATACCTAATGCTAAATGACG<br>AGTTAATAGGTGCAGCACACCAACATGGCACATGTATACATATGTAACAAATCTGCACTTTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATA<br>AAATTTAAAAAAAA</font><font color="green"><u>AAGATGTCTATGT</u></font>taatatatccactatcataagccttctgattccctctttcattcactggcaaggccattccagcacacaagtt<br>tcattttgtagtagccacagtttttcccaagattatgaaggtatcttagtagtagtctgttaccactaccttctgaagtttgagcacaactattaaattc<br>tatttcctttgagagtgcctcaaaacaaaaaaggaaagtgttgttgaactttttgaaagtgtttgctgcatctattgaaatgatcatgatgtatttcttt<br>ttagtcctaggtatgtgatgaatcacatttatttatttgcatatgtttaacgaatcttgcatcctaagattaatgcctacttgattgtgctggttagatt<br>ttgatgtgctgctg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr4	80888063	80894092	2000313	0	+	chr4-8124; RIP_L1_chr4_081_02;AC208817	TAAATGGCCTGTGATTGCTG;NA	GTTTCACCATCTCTAGAGTGC;NA	LINE	L1	L1HS	ttcctgatactcttcctgcctctgcgtcattattttctgaataggtaaattactgtaagttccccaaatgaaagatactctaaagcaaaaaagaactgaa<br>atttaagaaatattatgtgctctttctataaaatagaaataaaatttgtaggatattagagtctcaatacagattatatcactgccccatgcaaatatga<br>ttttatttaaacaaataatgaaatattactttttggataatactatttttatgtttacattattttagagacttaaaaaaatcactgaaatatttaccat<br>gattaaatggcctgtgattgctgcacattctttttggcacaagttgcctttgtcaatcaagatatttactgtgctggcgactata<font color="green"><u>AGAATAGGGCGTCCG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCAGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGAATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTTACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTG<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATA<br>CAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGAC<br>TAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGA<br>TGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTAT<br>CTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACTTTATACAAAAATTAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>TCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATAGGGCGTCCG</u></font>aaggcttcatttgttcacaagaagccaactgaaaattaacatataaaaatgtata<br>aactagtataagaaattgtcaaaacaaagtgaaagcatagtggaaataaatgcatttaagaagaaacaaagataaaagaagaaggaaggaaggaaaagag<br>ggagggaaagaggaaggtggggaggaagggaagtaagatagcactctagagatggtgaaaccaaaatagtatggtttcctaatacatactgtaaacttat<br>aaaaaatgttggggcccttcaattatcctaataatgtacagaaagctatttcactaaagtagtggaagaattcttgctgtgtatttttatgattaaatct<br>ctggaaaaatgtaggttcaggtttatatgt	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	62;NA	6358;NA	313;NA	NA;NA	intergenic;intergenic	
0	chr4	120300197	120300673	2000314	0	-	L1-4-27; RIP_L1_chr4_120_01	NA	NA	LINE	L1	L1PA2	tactctaccataaaaaaagaaagaaataatgtcttttgcagcaacttggatgaaactggaggccattattctaagttaagtaactaaggaatggaaaacc<br>aaatactacatgttcacacttataagtgggagctaagctatcagtatgcaaaggcagacagagtggtataatggacatgggagactcagaagtggggagg<br>ttgagaggatggtgatggatgaaaaactaccgattagagtacaatgtctactactcaagtgacgggtacattaaaatcccagacctcgtgactatacaag<br>tcatccatgtaaccaaaaaccacttgtactcctaaagctattagaataaaaaaaaggatgtaatcattcaatgaaagcataaagaaactaaa<font color="green"><u>AAAAGAAA<br></u></font><font color="red">AGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACA<br>CCATGGAATACTATGAAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAAGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGA<br>ACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGG<br>TGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATA<br>TGTAACTAACCTGCATGTTGTGCACATGTACCCTAAAACATAAAGTATAATTTAAAAATAAATAAATAAATAAAAAT</font><font color="green"><u>AAAAGAAA</u></font>tttcctaataatcac<br>tttcaatatatatttttaattgtttataaactcaaataaaatatagattacatttgtgaactatgtgtgtgcattcaaagctataacaatctcccctccc<br>caactgcagagatgaggggcctgaagggcctgaacagcagctaaagcaagggctccttgaaaacagcaacaggccctccctctgccacagggagatgcca<br>gcagtagcagtaggccatggaaccagcatgcaaggagtgggctgcttctattggtggtctacttttctactccaccaaacatatctatatttcactgctt<br>tgaagatttttttaagccacaaaattgttttcatagatgcaaaaaaaaaaaagaataaaaaatcagagctaaaataa	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr4	190058015	190064272	2000315	0	+	chr4-1904; RIP_L1_chr4_190_01;AC207775	TAAGATGGCTCTTGCCCTTC;NA	GGCAACGTAATGCATGTGAT;NA	LINE	L1	L1HS	ggagaaacaaatttaagtggacattggtacatggatgaaggaatacaatattacagttcagtcactttaaaaattactgtttgatatggcttggctgtgt<br>ccccacccaaatctcatcttgaactgtagcttccataattcccacgtgttgtgggtgggccccagtgggaggcaattgaatcatgggagcagtttcccgc<br>acactattctcctggtagtgaataagtctcatgagatctgatggttgtataaggggaaatcctttggcttggttctcattctcttcttgcctgccgccat<br>gtaagatggctcttgcccttccaccatgattgtgaggcctccccagccacgtggaaccatgagtccattaaacttctttccttt<font color="green"><u>ATAAATTACCCAGTCT<br></u></font><font color="red">AGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAGTTCTTAAGATCTGCTATGAAAAATAGATAAGGATTTTGAAGTTATCCATGGACTTTT<br>GGAGTATTGTTAATAAGAAGTCCAGAATCATCATGACTTTCAGTCTTTGATATGTGACTTGTTCTTTCTAGAACCTTATGGGAAGAGTCATGCTCCCTTT<br>TCACTTCAAAGTGAGTGGACAGAGTGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAGGACGGGTGATTT<br>CTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGG<br>CGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCC<br>ACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCT<br>GATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAG<br>CCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGA<br>GCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGC<br>CTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAA<br>CAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGAC<br>CAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTC<br>CTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATT<br>CAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGC<br>TGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGTAATGGAAGATGAAATGAA<br>TGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGT<br>CTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGG<br>CCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAAT<br>GAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAA<br>GCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAG<br>AAATAAAATATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACC<br>GGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCAAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAAT<br>GACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAA<br>GACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAA<br>AACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAA<br>GGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGGGACCTACAAAGA<br>GACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACTCAGGAAT<br>TGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTA<br>TTCCAAAGTTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAA<br>CTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGG<br>CAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGC<br>ACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACACTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCT<br>AGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTG<br>AAAGGATCAACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCAC<br>CACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGAC<br>ACATACACTCTCCCAACACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCA<br>AAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCGGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAA<br>AGAGGGAATCCTCCCTAACTCATTTTATGAGGCCATCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTCAGACCAATATCC<br>TTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCC<br>CTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGC<br>AGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTAT<br>GACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTAT<br>TCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGC<br>AGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAAT<br>GTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATCGCTTCAAAGAGAATAAAAT<br>ACCTAGGAATCCAGCTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAA<br>CATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATG<br>ACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTG<br>GAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAG<br>AACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAA<br>TGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGATGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAA<br>ACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTGAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGC<br>AATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACA<br>ACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACC<br>CCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCAT<br>CAGAGAAATGTAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGT<br>GGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCCAGAACTAGAAA<br>TACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCACT<br>ATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCC<br>ATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCA<br>TATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGA<br>GGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATG<br>TGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAA</font><font color="green"><u>ATAAATTACCCAGTCT</u></font>taggtatgtctttattagcagcatga<br>gaacagactaacacactgttttttaatgttttattacattgaactttcattcattgaatctatgattttcttcacttttatgcccataatattgagttta<br>taaattttaatgattttttttacacctgatatttagcctgcctaggcatagtgaacacacatcctggttcgcctgggaaagtccttgtttactagatgaa<br>tcacatgcattacgttgccaccctgttcaaagatatctcagcttggattcattccatcttaccctgaggcagaacctgagacaagggtttgctggtgtgt<br>agtttattgtgggaaataaaccacaggggcaagtgatggtgaaataggaagagtgaaa	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	62;NA	6618;NA	344;NA	NA;NA	intergenic;intergenic	
0	chr5	69855764	69855824	2000316	0	-	L1-5-29; RIP_L1_chr5_069_01	NA	NA	LINE	L1	L1PA3	atctataaattaccttgggcagcaaagacttggaaccaatccaaatgtccaacagtgatagactggattaagaaaatgtggcacatatacaccatgcaat<br>actatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaaac<br>caaacaccggatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacaccacacgctggggactgttgtggggtggg<br>ggaaggggggagggaaagcattaggagatatatctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaact<font color="green"><u>AA<br></u></font><font color="red">CCTGCACATTGTGCACATGTACCCTAAAACTTGAAATATAATAATAATAAAATTTAAAAAA</font><font color="green"><u>AA</u></font>atgttcatttttaattatagcactacaccatgcactg<br>aatcacggagggtaaaaatgcacactgttaataagaaggagggagtcaatctcattagtattataatatttatactgaatgagactccattcccgaaatt<br>cacagaattaaaataataaaaataaaaatttattgctagccaatttgcagcaaaaaagattcattctcatattctgctatgagaaaataaatgaaattga<br>attttaaaagacatttttggaaagccctttgaattaaccagaaaattgttaaattcgtagtttttttgactaacattcttcttccacgttaacagaattt<br>atatataagtgacactcattgcatatacttttaaggggtaaaataattactaaatttatgt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr5	68979690	68979749	2000317	0	-	L1-5-33;L1-5-30; RIP_L1_chr5_069_02	NA;NA	NA;NA	LINE	L1	L1PA3	attgcggcactattcacaatagcaaagacttggaaccgacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatgcaccatggaat<br>actgtgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaacc<br>ctaagaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacaccacacgctggggactgttgtggggtggg<br>ggaaggggggagggaaagcattaggagatatatctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaact<font color="green"><u>AA<br></u></font><font color="red">CCTGCACATTGTGCACATGTACCCTAAAACTTGAAATATAATAATAATAAAATTTAAAAA</font><font color="green"><u>AA</u></font>atgttcatttttaattatagcactacaccatgcactga<br>atcacggagggtaaaaatgcacactgttaataagaaggagggagtcaatctcattagtattataatatttatactgaatgagactccattcccgaaattc<br>acagaattaaaataataaaaataaaaatttattgctagccaatttgcagcaaaaaagattcattctcatattctgctatgagaaaataaatgaaattgaa<br>ttttaaaagacatttttggaaagccctttgaattaaccagaaaattgttaaattcgtagtttttttgactaacattcttcttccacgttaacagaattta<br>tatataagtgacactcattgcatatacttttaaggggtaaaataattactaaatttatgt	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:GUSBP3:NR:027386:1/6	
0	chr5	69166365	69166425	2000318	0	+	L1-5-32;L1-5-34; RIP_L1_chr5_069_03	NA;NA	NA;NA	LINE	L1	L1PA3	atctataaattaccttgggcagcaaagacttggaaccaatccaaatgtccaacagtgatagactggattaagaaaatgtggcacatatacaccatgcaat<br>actatgcggccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaaac<br>caaacaccggatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacaccacacgctggggactgttgtggggtggg<br>ggaaggggggagggaaagcattaggagatatatctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaact<font color="green"><u>AA<br></u></font><font color="red">CCTGCACATTGTGCACATGTACCCTAAAACTTGAAATATAATAATAATAAAATTTAAAAAA</font><font color="green"><u>AA</u></font>atgttcatttttaattatagcactacaccatgcactg<br>aatcacggagggtaaaaatgcacactgttaataagaaggagggagtcaatctcattagtattataatatttatactgaatgagactccattcccgaaatt<br>cacagaattaaaataataaaaataaaaatttattgctagccaatttgcagcaaaaaagattcattctcatattctgctatgagaaaataaatgaaattga<br>attttaaaagacatttttggaaagccctttgaattaaccagaaaattgttaaattcgtagtttttttgactaacattcttcttccacgttaacagaattt<br>atatataagtgacactcattgcatatacttttaaggggtaaaataattactaaatttatgt	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr5	69559428	69559488	2000319	0	-	L1-5-31; RIP_L1_chr5_069_04	NA	NA	LINE	L1	L1PA3	attgcggcactattcacaatagcaaagacttggaaccaacccaaatatccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaat<br>actgtgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcacaaggacaaaaacc<br>ctaagatcgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacaccacacgctggggactgttgtggggtggg<br>ggaaggggggagggaaagcattaggagatatatctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaact<font color="green"><u>AA<br></u></font><font color="red">CCTGCACATTGTGCACATGTACCCTAAAACTTGAAATATAATAATAATAAAATTTTAAAAA</font><font color="green"><u>AA</u></font>atgttcatttttaattatagcactacaccatgcactg<br>aatcacggagggtaaaaatgcacactgttaataagaaggagggagtcaatctcattagtattataatatttatactgaatgagactccattcccgaaatt<br>cacagaattaaaataataaaaataaaaatttattgctagccaatttgcagcaaaaaagattcattctcatattctgctatgagaaaataaatgaaattga<br>attttaaaagacatttttggaaagccctttgaattaaccagaaaattgttaaattcgtagtttttttgactaacattcttcttccacgttaacagaattt<br>atatataagtgacactcattgcatatacttttaaggggtaaaataattactaaatttatgt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:LOC653391:NR:029426:1/10	
0	chr5	103854289	103860326	2000320	0	+	chr5-1038; RIP_L1_chr5_103_01;AC210770;AC196527	TTTGTTTTCCAAATGTGTGGTT;NA;NA	AGGAAATGGTGCCACATAGG;NA;NA	LINE	L1	L1HS	aatatatataatatatatgcagtttgggtactattgctatgtatcccttgatgaacagaagttttaaatttaatatatagtaaaagttacaaataatata<br>ttttacattatagtctctgtcatgtattcaaaattcttctctacctcaaggtctaaacaattttcaaacatatattctaccaaagtagtcaaatttgttt<br>tacttatttgtcattaatctttctagatttgagttttgccaattatctaaagaatccaattttgttttccaaatgtgtggttattttttctaactatatt<br>tacttaatatgatttaaaatccacactgattggcaagaagaattatgttgctttctccaaggtcaaacaagttgcaagtccccttt<font color="green"><u>AATAAAATTATTAA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCATGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAGTAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTCATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTGG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAACCCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTGAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAATAATAATAA</font><font color="green"><u>AATAAAATTATTAA</u></font>atatacttaacttttaaagccccataccggagatgttattacatattt<br>agtaatgtttatctattcaaggaggattgtcaattttataattataatactctctttgatattctaacaataatataaaacctgactaaggttaaagcag<br>tatctaattgatctttagcctatacttttcagtacatgaaagtctcacatttacatttcctatgtggcaccatttccttagaaggatgtccagtggttaa<br>taacacagctatctgagtcatggtttaatatttacaacaatattataaatcattctgccttaaaatacttctatttaaaaatttttaaaagaactgatta<br>tatgaaaaacttttccaaaaagtgcactatttggttaa	UCSC;UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	56;NA;NA	6418;NA;NA	366;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr6	19953007	19953122	2000321	0	-	chr6-2006; RIP_L1_chr6_020_01	GGAAAACATCCACAGTTCAACTG	CTTTCTCGTGTTGAGGTACAG	LINE	L1	L1HS	catcagatttagaaaggacaagaaaaggaacaataaaaaaaaaatcctaccaagattcactgtatgagcagaacagagagacaaatagttcttaaaggca<br>attagaaagaaaagggaaaacatccacagttcaactgtaggtaaagacttgaaaactgctgaattctaccaaatatttaaaaaagaactaataccacttc<br>tcaaactaatttcagaaaatttaagaggaatactttcaaactcatcttataaggccaacattattcagattccaaaactgggaaagaacacaataagaaa<br>agaaaactacaggccaatatccctgaggaaactagatgcaaaaattctcaaccagatactagcaaactgaatccaacagtacat<font color="green"><u>TAAAAAGATCATTCAC<br></u></font><font color="red">ATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAATA<br>AATAAATAAATAAAAA</font><font color="green"><u>TAAAAAGATCATTCAC</u></font>tatgatcaagtgagattcatctcagggatgcaagcatgatttaacaaaaaccaaatgattatttcaat<br>agacacagaaaaagcatttgacaaaattcaacatccttcatgatgaaaactctcaagaaattaggaacagaagttctgtacctcaacacgagaaaggcca<br>tatatggaaaactcatagctaacattatattgaacaggaacaagacaagtatgaccatttttaccacttttattcaatgtagtattgtaagtcctagcca<br>gagcaattagccaaggtacagaaataaaagacacccaaattggaaaagagagagtcagatcgtccctgtttgtatatggcataattgtatatagagagaa<br>ccccaaagacatcacc	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	582	451	NA	intergenic	
0	chr6	57478161	57478855	2000322	0	+	chr6-5758; RIP_L1_chr6_057_02	AATGAATACCATGATATGCCAAA	TGCCTACACTATAAACACTTAGGAACA	LINE	L1	L1PA2	ttttgctctgtaaaagacagctttaagagaacaagataagccacagactggaagaaaatatttgcaaatcataaatttcataaaagatgtgaatccaaaa<br>gatataaagaactctcaaaactcagtaattagaaaacagttttttaaacgggcaaaacatttgagtagacagttcaccaaagaaaaagtgtgaatggtaa<br>atataagcacatgaaaaaatatagctcattagtgaaatgaaatttaaaactacaatgaataccatgatatgccaaatagaattggtctaatttaaaaaaa<br>tctagcaatactaagtgctagtgaggatgcagagtgactgaaggtctcatacaatagtggaggaaatgcaagtcatagagtcactttg<font color="green"><u>AAAAGGAGTGTG<br></u></font><font color="red">AATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAA<br>CCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATA<br>AATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGA<br>CTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAA<br>ACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGA<br>AGGGGAACATCACACTCTGGGGACTGTGGTGGGGAGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGATGAGTTAGTGGGTGC<br>AGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATTTAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>GAGTGTG</u></font>gcaatttcttataaagtgaagcttacacatgctatgtgacacagtgatacctgtaactagtatttatagaattgaaataaaagcataagtcca<br>cataaaaatctgttcctaagtgtttatagtgtaggcattattcataattgccaaaaactagaaacaacccagatgttcttcagtgtgtgattggataaac<br>aaattgtggtatagtcatacaatggaatattacctgacaatagaaaggaataaattactggtatacccattaaaatgtaaggttctcaaatacattatac<br>caagtgaaagaagtcagactcaaaagcactatagtgtataattctatttgtatgataaatctgtaggtacagagtgattgctgggagcaggagag	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	984	277	NA	intron:PRIM2:NM:000947:12/15	
0	chr6	86708754	86714791	2000323	0	-	chr6-8676; RIP_L1_chr6_086_01	ACACATATGTTTATTGTGGCAC	AGCCACTAGTCTCTTGTGCT	LINE	L1	L1HS	catatgaaaaaatgctcattgtcactggccatcagagaaatgcaaatcaaaaccacaataagataccacttcagttagaatggtgatcattaaaaagtca<br>ggaaacaacaggtgctggagaggatgtggagaaacaggaacacttttacactgttggtgagactgtaaactagttcaaccattgtgggagacagtgtggc<br>aattcctcgaggatctagaactagaaataccatttgacccagccattccattactgggtatatacccaaaggattataaatcatgctgctgtaaagacac<br>atgcacacatatgtttattgtggcactattcacaatagcaaagacttggaaccaaccaaaatgtccatcagtgatagactggatta<font color="green"><u>AGAAAATGTGGCAC<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGAGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTCTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACTCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGT<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACG<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGAATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATTCTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATGTCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>TGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAA</font><font color="green"><u>AGAAAATGTGGCAC</u></font>atatacaccgtggaatactatgcagccataaaaaaggatgagttcatg<br>tcctttgtagggacatggatgaaattagaaaccatcattctgagcaaactatcgcaaggatagaaaaccaaacactgcatgttctcactcacaggtggga<br>actgaacaatgaaaacacttggacacaggatgaggatcatcacatactggggcctgacatggggttgggggagggagcagggatagcattaggagattta<br>cctaatgtaaattgccagttaatgggtgcagcacaccaacatggcagatgtatacatatgcaacaaacctgcatgctgtacacatgtaccctagaactta<br>aagcataataataaaaataaataaataaatagcacaag	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	6546	494	NA	intergenic	
0	chr7	61773346	61773725	2000324	0	-	L1-7-39; RIP_L1_chr7_061_01	NA	NA	LINE	L1	L1PA2	atgttttgcaatatttctccatttattatgctttaaattagttgaatcatgcccctataatgtgtacattttaacctttgactataggtctcaatcttac<br>tttggatcctgcatttcaatttatgctaataaagtcctacagctaaaaaagatcatataaacttatctacacttttactagtattctggtgtcattttaa<br>attatgtaatgaaatcaaattttaatttggattattgttatctgagttaaggatctaaatttttaattttcctataaatattacataattatttctgaac<br>catatattgtctaatctgccctttatatgatgtgcattataagagcttgggattgtttcatttgcaaagatgaatgcttgagaagtagatattt<font color="green"><u>AATCAT<br></u></font><font color="red">AAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACTATCA<br>TTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACGGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAA<br>TATCACACTCGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACAGGTTAGTGGGTGCAGCGCACC<br>AGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAA</font><font color="green"><u>AAACAT</u></font>ttcaaaatctactg<br>gataacctagaagtgaaaaatagcctataggttcaaaaactcctgtagtgaagaaagaaaataactaatatacagtgacaatataaatattataaatatt<br>tattttattaccaccctgaaatttgataatacaaacatgtaatagctacatatcatccatatatcaggtcataaaaaatcaacacattcttcaaaaattt<br>agcataacagaaaatgcactctgtctccttgatggaattaaggtaaaaataaaagtaaaaataagtagataagtagatggaagtagatgtttaaaaacaa<br>agaaaaatatttgtttgggataacataaaatctcaattgacaattccaatatttccagaacattgcctgtcaacttgtgt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr7	108578224	108578225	2000325	0	+	L1-7-40; RIP_L1_chr7_108_01	NA	NA	LINE	L1	L1PA4	agtgagaacatgtggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccacatccctacaaaggacatgaactcat<br>cattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcgttgttggacattttggttgtttccaagtctttgc<br>tattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctttaggtatatacccagtaatggaatggctggg<br>tcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttacagtcccacgaacagtgt<font color="green"><u>AAAAGTGCTC<br></u></font><font color="red">CTGTTAGGGGACCATCACACTCTGGGGAGTGTTGTGGGGTGGGGGGAGGGGGAGGGGGGGAGGGATAGTATTGGGAGATATACCTAATGCTAGATGACGA<br>GTTAGTGGGTGCAGCGCACCAGCATGACACATGTATACATATGTAAATAACCTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAGTGATAATAA<br>ATAAAGAAAAAAAAGAAAAA</font><font color="green"><u>AAAAGTGTTC</u></font>atatttctccacatcctctccagcacctgttgtttcctgactttttaatgatagcccttctaactggtgt<br>gagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcataaatgccttctttt<br>gagaagtgtgtgttcatatcctttgcccactttttgacagggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagcc<br>ctttgtctgatgagtaggttgcaaaaattttctcccattccataggttgcctgttcactctgatggtggtttcttttgctgtgcagaagccctttagttt<br>aattagatcccatttgtcaa	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr7	9634651	9635977	2000326	0	+	chr7-9407; RIP_L1_chr7_009_01	GCAACAACCTCATAATACAGGA	CAAGTGACATTATGCTCCTC	LINE	L1	L1HS	cttatgttgatgcaaaagtaattgcagtttttgtcattaaaagtaacagcaaagtaattaaaagtatggcaaaaactgcaattactattgcaacaacctc<br>ataatacaggaaattgataccaagagtgaggtattgctataaagaaatgtaaaaatatggaagcaactttggatctgggtaatgggcagagggtggaaca<br>gtttggagggctcaaaagaagacaggaagatgtgagaaagtttgggacttcctagaaacttgttgaatggttgtgaccaaaatgctgatagtaatatggc<br>caatgaagtccaggctgagggggttgcagatggatacgaggaactccttgagaaccagagcaaaggtcagtcttgctctgcttt<font color="green"><u>AGAAAAGAGACTACTG<br></u></font><font color="red">CCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTT<br>GCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGACCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTT<br>TAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCA<br>GCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTAAAGGGCTA<br>ATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAG<br>AAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACC<br>AGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTA<br>GTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCTAAATG<br>AGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAAT<br>GATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAA<br>TTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGAC<br>ACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGT<br>GGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAATAATAATAA<br>TAATTAATAAATAAATAAATAAATAAA</font><font color="green"><u>AGAAAAGAGACTACTG</u></font>gcgttttgcccctgccctagagatctgtggaactttgaacttgagagatgatctgaa<br>attggaacttacgtttaaaaggaaagtagagcataaaagtttgaaaaatgcgcagcctgatgatgtggtagaaaagaaaaactcattttctggagagaaa<br>tttaagcatgctgcaaacattttcataagtaatgaggagcataatgtcacttgtcaagacaacaatagggaaaatgtgtctagggcatgtcagagatctt<br>gatagcagcccttcccatcacatgcccagagggctagaaaggaaaaatggttttacgggctgagtccaggaccgctctatactgtgcagccttgggattt<br>aatgccctgtatcccagctgctctagt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	1864	521	NA	intergenic	
0	chr7	144382761	144382897	2000327	0	-	chr7-1438; RIP_L1_chr7_143_01	TCCCATCCATAGGAAAAGGAT	GCATCAATTTTCTGACTCTCCA	LINE	L1	L1HS	aatgaatatttttttttccacttcgcctctgctttatttctcatgtaccatagaacacagaaaatagtcttacatatcatggataagtggaaaatacatt<br>ggaacttttatttctgacaatatagtcaggtagatattctttaaatatcccatccataggaaaaggattttaaaaaaaaaaagataaaagaaggtataga<br>aaatattagcaacagattatcagaaaagaccttgaattgaaaaaagaatcaaatagaacttctttaaaaagaatcagtaagactataaactttaatgttt<br>taaacaggtgactagacataattgcaagagaggtttgaagaaattacatgcatacacagaaagaaaaggtgatagaagcgacacagttt<font color="green"><u>AAGAAATGTGA<br></u></font><font color="red">CATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAA<br>AAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGTGA</u></font>agggcagaatgagactgtctaaaaatacgtttaaatggagagtcagaaaatt<br>gatgcgtagagagaatggaaggtaggaaataatggaattaaaagtggctaagaattatccagaactgaagaaagtcatgggtcctcagatttaggaagca<br>cattttgttgttgttgtttttcagacagggtctggctctgtcgcctaggctggagtgcagtggtgccatcttggcttactgcagcctggacctccccagg<br>ctcaagcgatcctccagctcagcctcctaagtagctgggactacaggtgagtgccaccatgctcagctaatttttaaaaatttcttgtagagacagggtc<br>gtgccatgttgcccaggccggtcttgaatttctcagc	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	56	458	310	NA	intron:TPK1:NM:022445:3/9	
0	chr7	32390166	32393112	2000328	0	-	chr7-3216; RIP_L1_chr7_032_01;AC206606	GTGCACCATAGTTGGATCCAG;NA	GAATCTGGTCCAACTAAGGTC;NA	LINE	L1	L1HS	gagattgtattgatgtcatgatattcagttgggtacactgggagtgaggaagtggatgttttcatttcagctcccaaatggatatttctaaaataagaca<br>aatatgaaaaagagaaaaataccttcttctatatcatttcataaactcctccaagctccagttcctctcatgcaagaaatttaaaacaatctcaaagaca<br>atacactcaaataaattgcaaggaaaataaaaaagaatggaggcaatacctgtagactaaaaagatttaaaaatatgttggtcaaatgccatctgtgcac<br>catagttggatccagaatctaacaaactagaaaaaaaaaaaaaacaaaaactacaggcaatacctgtagactaaaaagacttaaaa<font color="green"><u>ATATATTAGTCAAA<br></u></font><font color="red">ATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAAT<br>ACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGA<br>ATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTC<br>TACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCA<br>TCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACT<br>GGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATA<br>AATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGC<br>TAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAA<br>ACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGG<br>CAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCT<br>CAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAG<br>ACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTC<br>TTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGA<br>AAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTT<br>CATATGGAACCAAAAAAGAGACCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAG<br>GCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACT<br>ATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCT<br>GAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAAC<br>CTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAA<br>TTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAA<br>AGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTC<br>TCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATC<br>TCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTG<br>TAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATAC<br>CCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTC<br>CAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATG<br>GATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCA<br>CATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACA<br>CATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAA<br>AAAAAAAAAATATATATATATATATATATATATATATATATATATAT</font><font color="green"><u>ATATATTAGTCAAA</u></font>tgccatgcatagaccttagttggaccagattctaacaaa<br>ctagaaaaagaacctagcaaccatttatgacatttgggagatgattagatattagaacacaatatttgatgatattaaggaattgttctttgtttggctt<br>agttataataatagtattgtggttgtgttaaaaagaaagaccctttatgttctacatacatactctagaacataaagtatgtaagatgaaatgacgtgat<br>gtctggagtttgcttcaaaatgatacaggagggagggaggttaatgggaatgtagaaaggacacaattggctgtgaattgatggtagttggtgctgggaa<br>tagctaaatggcggctcattatattattgtgtttaattttgagtaag	UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	62;NA	3099;NA	137;NA	NA;NA	intergenic;intergenic	
0	chr8	18427136	18427373	2000329	0	-	L1-8-44; RIP_L1_chr8_018_02	NA	NA	LINE	L1	L1PA3	ggctagccagttttcccagcaccatttattaaatagggaatccccattgcttgtttttgtcatgtttgtcaaagatcagatggttgtagataagcggcat<br>tatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccacggtgttttggttgctatagccttgtagtatagtttgaag<br>tcaggtagtgtgatgcctccagcttcgttcttttggcttaggattgacttggcgatgcgggctcttttttggttccatatgaactttaaagtagtttttt<br>ccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattga<font color="green"><u>TTCTTCC<br></u></font><font color="red">TACCACATATTCTCACTCATAGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAGGGGAATGTCACACTCTGGGGACTGTTGTGGGGTCGGGGGA<br>GTGGGGAGGGATAGCATCGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACGTATGTAAGTAACCTG<br>CACAATGTGCACATGTACCCGAAAACTTAAATGGAATG</font><font color="green"><u>TTCTTCC</u></font>atttgtttgtatcctcttttatttccttgagcagtggttggtagttctcctggaa<br>gaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgt<br>ctgttgttggtgtataagaatgcttgtgatttttctacattgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggt<br>gctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcaggga<br>tctagaactagaaataccatttgacccagccatcccat	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:PSD3:NM:206909:11/13	
0	chr8	71583572	71584643	2000330	0	-	chr8-7174; RIP_L1_chr8_071_01	CTGCACCTGCATGTTTATCAC	TACAGGGTCTGGCTTTCACC	LINE	L1	L1HS	atcaggcaaatgcaaatcaaaaccataatgagatatcatcttaccccagttagaatagctgttattaaaaagacaataacagatgctgcagaggatgtag<br>agaaaaaggaactctcatacacagttggtgggaatgtaaattagtacaaccgctatggaaaacagtacagagatgtataaaatacacacacacacacaca<br>cagaactaccatatgatttagcaatcccactactatttgtatatcaaagggacaactgcacctgcatgtttatcacaacattattcacaataggaaagat<br>atgaaatcaacctaaaagtccatcaacaaacaaatggataaagaaaatgtgatatatacacacaataaaatactatttggccat<font color="green"><u>AAAAAAATGAGATCAT<br></u></font><font color="red">ATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGT<br>CAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTC<br>CAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCT<br>ACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTG<br>TAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAA<br>TGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGA<br>TAAACAATCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGATTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTC<br>TGGGGACTGTGGTGGGGTCGGGGAAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCA<br>CATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAA</font><font color="green"><u>AAAAAAATGAGATCAT</u></font>gtcattttcagc<br>aacatggatggaactagagattatgataagtgaaataatccatgcatagaaagacaaatatcacatattctcattcatacgtgggagctaaaaagtttat<br>ctcagccaggcatggtggctcaagcctgcaatcctagcactttgggagaccaaagcaggaggatcacctgaatcgcttgagttcaagagttcaaggttac<br>agtgagctatgatagtgccactgcactgcagcccgggtgaaagccagaccctgtaagtaaataagtaagttaagtaaggaaattaattaagccaaagaat<br>aaaagaaggggagtgcccagattctcaggaatctggtccagaaattactgttccatcctcttctccagggtt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	1500	412	NA	intron:XKR9:NM:001011720:1/5	
0	chr10	127745196	127745980	2000331	0	+	chr10-1277; RIP_L1_chr10_127_01	CCTCTGAAACTGCTGCTGCT	TCATTTGAAACCCCTTAGCC	LINE	L1	L1HS	atatcatactttaccactgaaatatggccaggaagtgatgtccctgaggcacagcaatgatagggctcactgccacatggcaaagaaaaggggcatttgc<br>aggagaggcaggctatgatttcatcagccatgtaaacacggggataggacagatgcatttctctatggaatcaaaggcccgaatgcatactccagcccct<br>gtcatctactttgttcattctcttccctggagaatgaagaaaagtggctaactcacgggtagccccaatagatacgatcttttgcttccttttatcagtc<br>ctctgaaactgctgctgctttaatttggtagtggtggtgagggtttgcaaggaaggtgggaggaagatggagcagagccctgttt<font color="green"><u>ACAATGCTTACTCTT<br></u></font><font color="red">GAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGT<br>TTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGACATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCC<br>ACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTC<br>TTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCAC<br>ACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACT<br>TTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCCCGGGGTCGGGGG<br>AGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCT<br>GCACAATGTGCACATGTTCCCTAAAACTTAGAGTATAATAAAAAAAAAATTAAAAAACAAAAAAACAAAAAAACAAAAAAAAAAA</font><font color="green"><u>ACAATGCTTACTCTT<br></u></font>atccagttggccagggtgccttaccctggagtctccaggctgtaatgagaaatctcccatgaggaacacggatgtttaaaggctaaggggtttcaaatga<br>accaaacttctaaggacgcagcggccggaacttggtcctgtttgcaacacgcccctgctgccccaaactccaatgttaggttgtaggatggtaccatggt<br>gggctctgggccacttcctggggccagggagctgccagctagtggtcgccagagtgattcagcacaactccttccagaaccacacactggccacacccct<br>ccagggtgaaatctacctgtgtggtaggaggttgctctgggagcttggagcagcaacagcactttgtgaaaacggactgtggggt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	62	1001	201	NA	intron:ADAM12:NM:003474:14/23	
0	chr10	5012759	5013160	2000332	0	+	L1-10-47; RIP_L1_chr10_005_01	NA	NA	LINE	L1	L1PA2	caaagcatgtcacaggaatgaagatattctcccagttccagtgtcattactgtatctaagaacatcatctatagtgccctcatgtcatttggtatccagt<br>ccatatttgaatttttccttgcttaatcaaaatatcttttgtagctcttctttttttaaccagaattcaattgtttttatattgttgtattttgatatca<br>gttaacttgtttttcccagttgttgaaggtttctgtaaattagaagttagatgagagtgttttattacattgacttaaacctttggggcaagaaaatatt<br>tttatcatgctgtgtttttcaaattgcaccacactagactgcatacaatcacagaatgccccactagtggtgaaggtagtttt<font color="green"><u>AAAAACTTGGTTAAGCT<br></u></font><font color="red">CCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACAT<br>GGATGAAACTGGAAATCATCATTGTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATC<br>ACATGGATACAGGAAGGGGAATATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGCTAGATGAC<br>GAGTTAGTAGGTGCAGCGTACCAACATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTCGAACTTAAAGTATAATAAAAAA<br>AA</font><font color="green"><u>AAAAACTTGGTTAAGCT</u></font>aacagtggtcagatctgttgtttttaactcatgttttctctttaacaattactagtaatctgctgggggataattctcaac<br>agaagaagtcatattcccatgacaaattttcacatatgattgagtatacatcagtgatttgaacttttttctactgcatttctgttttcttctttgttat<br>ttcttatttgttatttccttggggtttttacataatcatttacaattttaaccacttgtttaactattcttacctgacatttaattaaaaatgatttctc<br>accaagtaaaaataataaactactattcctctaagtgagggtaaaggtgaacttcttccttcaattagcaatgtactgtgaacgtaattactgtaatgac<br>ca	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:AKR1C1:NM:001353:5/9	
0	chr11	49713022	49713565	2000333	0	+	L1-11-48; RIP_L1_chr11_049_01	NA	NA	LINE	L1	L1PA3	ttccctacaccaaaacttcccatcaattttgttgatgtctcctttgagaatcagatgcctgttaccccagggaaatgcatatgtgcccatccatgtgaaa<br>tgctgcacataatcctaagagggttcacaaactttttagggtctactcatgagccccctggtaataacacctgccgaagctaccaccttaatttctatgt<br>taaaaactgaggagtgggtgggctactgggccctgcttctgaagttaagtgattgggggagctttttaaatcatatttttaaagtgtacctttccctcaa<br>ttttaaccaggatcacttgatcatcataatgtgcatgtattaatggctttatttgagctgttaataatgtccttaaaaatattttt<font color="green"><u>AAGAAATCTGAATC<br></u></font><font color="red">AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTATAGGGACATGGATGAAAGTGGAAATCATCATTCTCAGTAAAGTATCGCAAGAACAAAACACCAAACACTGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACGTCACACTCTGTGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGTACCC<br>TAAAACTTAAAGCATAATAATAATAAATAAGTTAAAAAAAAAGA</font><font color="green"><u>AAGAAATCTGAATC</u></font>tcactgttatttctttaaaattaattgaacacacacacaaac<br>aagagaaaatagaaacttaaaatccttcctgtctatactggtgacttaactttgtgatgttttcagtagtaaagccagcctttagctaggagttcataaa<br>tattgagaagcatgatctttttccagagaaagtgcctaccaatttgtgtggattctggttgccaagagacaaagtttagtccattcaaattaagttcaat<br>ggtctaaaaaatgccaattttatgataaaatgctatcttttgtggtagaaaatgtttatttaaaatatttaggcctttaacatgtactctttaaataatg<br>acaaatatgtgcaactttgaaattgagggttttcttttactttt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:LOC440040:NR:027044:2/7	
0	chr11	89556604	89557729	2000334	0	-	L1-11-49;L1-11-50; RIP_L1_chr11_089_01	NA	NA	LINE	L1	L1PA2	tatacagatatcctgggattcttgctgagagaagaaaactcagccaaagcctttgggacctcagtcggtagttgtcaccagtgatgcagtcagggtctta<br>cagggaatgcccactgacactaaaggttttgaacttttgttcaaaccaaaggagtctattttcagcctgtcagctctggcgctgaggatcctgaggcagc<br>cattcccctcttagattctacctacaacagggcagtgcagagatggagcagggcctggctattgatatccctgggaacaaatcctccctccctttcctgt<br>ccttagggcatttccctctctttttcacctctcgcctctgcctctccagaataggagactcctttgtgataactcagagtaatcttctt<font color="green"><u>AAGATTTGCTG<br></u></font><font color="red">GGTTGAACTAGTTTACAGTCCTACCAACAGTGTAAAAGTGTTCCTGTTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCA<br>TTCCAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTTTTTTGGCTGCATA<br>AATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATT<br>CTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGA<br>AGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGGTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTG<br>AATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTCTTTAGTCCATCTTGAATTGATTTTTGTATAAGATGTAAGG<br>AAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAACAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTT<br>TGTCAAAGATCAGATAGTTGTAGACATGCGGCGATATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGC<br>TTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACA<br>ATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGC<br>TAGATGACGAGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTGCCCTAAAACTTAAAGTATA<br>ATAAAAAAAAATAGAAAAAAAAAAAA</font><font color="green"><u>AAGATTTGCTG</u></font>gggcagggctggagaagatggggtgggtgggtagaagaaaatccagaatggcacactgttttt<br>cgatacatattcattcagccagataagaaggaaacttctgagacaaagaagcttaagttctcaggttctcctttgaaaccaaaatggaacatagccacag<br>attaatgctaaatacctcaaaacatgtagttgacccttaagcgacaagggtttgaaatttgggggtccacttataagtggatttttttcaatgaaagttt<br>cacctagcttgcctgcctctcctgcctcccactccatttcttttatttctgcctctgccactgctgagacactgtcttctcttcctcctcctcttcagcc<br>tactcaatgtgaagacaatgaagatg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr11	93150768	93150769	2000335	0	+	L1-11-51; RIP_L1_chr11_092_01	NA	NA	LINE	L1	L1HS	ataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatcgagaaaaccccattgtctctgcccaaaatc<br>tccttaagttgataagcaacttcagcaaactctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagacaaacagagag<br>ccaaatcatgagtgaactcccattcacaattgcttcaaagataataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaac<br>tacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatg<font color="green"><u>AAAATGGCCATAC<br></u></font><font color="red">CGGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCT<br>CACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGG<br>GTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAA<br>GAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTG<br>CAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCAC<br>AGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCT<br>GTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTG<br>ACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCT<br>GTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATG<br>GGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGA<br>TGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAACAAAGGCAAAGAAGTTGAAAA<br>CTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGT<br>GAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTA<br>GAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGACTGGTGTACCTGAAAGTGATGT<br>GGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAG<br>AGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCA<br>GAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATT<br>CAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAA<br>ATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATC<br>ATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACAT<br>AACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATT<br>CAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTG<br>CAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGA<br>GCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTA<br>ATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAG<br>CAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGT<br>TGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTACAACTCAGGATTAAGAAT<br>CTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTG<br>AAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAA<br>GCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACT<br>AAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATA<br>GACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACA<br>AACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTA<br>AACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATG<br>GATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTC<br>ATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAA<br>ATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCA<br>ATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAAT<br>TCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATC<br>ATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTC<br>TGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCT<br>AGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTC<br>TTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAA<br>GGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGG<br>AAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAA<br>AAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACT<br>TCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAAT<br>GCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTA<br>GCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAA<br>AAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAAT<br>TGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATA<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAATGGCCATAC</u></font>tgcccaaggtaatttgtagattcagtgccatccgcatca<br>agctaccaatgactttcttcaaaaaattggaagaaactactttaaagttcatatggaaccaaaaaagagcccacatcgccaagtcaatcctaagccaaaa<br>gaacaaagctggaggcatcatgctacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagaaatatagat<br>caatggaacataacagagccctcagaaataatgccgcatatctacaaccatctgatctttgacaaacctgacaaaaataagcaatggggaaaggattccc<br>tatttaataaatggtgctgggaaaactggctagccatatgtagaaagc	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:CCDC67:NM:181645:13/14	
0	chr11	24349496	24355548	2000336	0	+	chr11-2430; RIP_L1_chr11_024_01	AATCACTAAGAAATCTATGCAAGG	CTTTTCCTTTCAACCCACCT	LINE	L1	L1HS	agctggatacattttatttattttaagtaagtaattttactatttttaagtagtaaaatagtgacacctgtaggttatgacatctatatattttatgatg<br>tacacacacacatagagagtaatcactaagaaatctatgcaaggaatatatgcataaattaaaatggaactctaaaaaatgttcaagtaatccacaaaaa<br>ggcaaagaaaaataaacagtgcaataagcaatagagaatgaaagataaaatagataataaaatgccattcttaatctgtaatttatgattacattatata<br>tatttatatacaattatatataaatatataattacattaaatagtctaaaaacaccaactacaaggtagagatttcatagagtggat<font color="green"><u>AAAAACAGAACCC<br></u></font><font color="red">GAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TAAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGTAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACGTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTGTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACATCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACAGAACCC</u></font>aattctatcatgtctacataaactaaattcaaac<br>ataaaaatataggtgggttgaaaggaaaagaaaactgaaaaatgacaaacattatcaaaacaatcatgagaagctgtatttatgttatataatgtaggct<br>tcaggcaaagaaaatttcaagagacaaaaaggtaattacataatgataaaaggatcaatacaccaaaaatctcattagttttaaatgtctatacagcaaa<br>caacagcttcaaaataaagcaaaaaatgtatagaaatcaaaggagaaatagatccacatttatatttggctacttcaaaactacttttagcaattgacag<br>aactactggacagaaatgccacaatgttataaaaaattaaataacaaacaggt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	6410	344	NA	intergenic	
0	chr11	122347589	122349258	2000337	0	+	chr11-1218; RIP_L1_chr11_121_01	TCTTTGCTCTCCTAACCAAACTT	TGTTGGGTACTTGGGTCACTC	LINE	L1	L1HS	aggaaggagagatgaaagaagggactgggaactgagagaatgtaattgtttgaaacagccactgggagactcctcaataaatcaaaacaattagctgtgc<br>agtaatcttgtctcccccattatatgattattctggtagaggttaagcctgcatattccatattcattttaaaatctttcattatacctggcatgttatc<br>cctggatcagtatatgtttgtgcttcactgattctttccttataaacctgtgaatatattttcttatctttgctctcctaaccaaacttttaagtaagat<br>ctaagatttaatgagaccagttacatatcttctattgccacagataggagaatcctctggtcttctccagttggttcagaaccctggg<font color="green"><u>AAAGAAAGGAAA<br></u></font><font color="red">TAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATT<br>CAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAG<br>TCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACC<br>AAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCA<br>ATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAA<br>ATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCA<br>AGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAAC<br>TACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAA<br>CAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACA<br>TGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTC<br>AGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGG<br>CGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACA<br>CATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCA<br>CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTCATAGGTGGGAATTGAACGATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACAT<br>GTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAAGAAAGGAAA</u></font>aaaaaaaaaaaaagaaag<br>aaacagaaagagagagagagaaagaaagaaagaaaaggaaggaaggaagggaaagagagagaagaggcaaggggacaggggatattatttattgagtgac<br>ccaagtacccaacaatagaattcataggactcttgtaaaattggtatcttgatgcttgactacatagtatctacagctgtgacagtgtaatcaaggtatt<br>gcccacaacagacctatctgtgcacaatcaccatctgtcatttttttacatggataatgaaggaaatcttgtctataattcaatagacaaattaaaatta<br>tcatagacaagtactgattttgttttaccaatacacttattcatttcttctggtcatggcaattcagagg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	64	1948	247	NA	intergenic	
0	chr15	55218231	55224424	2000338	0	-	chr15-5300; RIP_L1_chr15_053_01;AC210541;AC193136	CTTTATAAACCTGGTGAAAGAGGT;NA;NA	CATTATCCCACTCTCCTATCCTG;NA;NA	LINE	L1	L1HS	gaaatctattggatttataggaaagcatcaaaacagcaaatttttaagtcatagcagttcaagaagagaaaggtaaatgagtagaaagcttatttaatga<br>ggcggtggatcacgaggtcaggagattgagaccatcctgggtaacacagtgaaaccccatctctactaaaaaaaaaaaaaaaatacaaaaaatcagctgg<br>gtgtggtgacaggtgcctgtagtcccagctgcttgggaggctgaggcaggagaatggcgtgaacctgggaggcagagttgcagtgagccgagatgatgcc<br>actgcactccagcctgggtgacagagtgagactccgtcctaaaaaaaaaaaaaaaaaaaaggcagaaacctttataaacctggtg<font color="green"><u>AAAGAGGTAATTATC<br></u></font><font color="red">GATTCATTTCTTTTAGCTGTTTTATAGAAGTCCATCACATGAATATACCACATTTTATTTGTCAATTTCCTTATTGCTGGATGCTTAGATTGTTCCAGTC<br>TTCACTCTTAAAAATATGCTATAGTGAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGG<br>GTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGA<br>AGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGT<br>CACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAA<br>TCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAAC<br>AAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAAC<br>AAAAAGGCAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGG<br>GCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGG<br>GTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATC<br>ATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCACCTCTCCTCCTCCAAAGGA<br>ACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGG<br>GAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGC<br>TGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGA<br>TGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCA<br>AATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAG<br>CAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAA<br>AGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAA<br>ACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAA<br>GTGAAGGAGAAAGAAAATACTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACAT<br>GGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCA<br>GCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTT<br>GGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTA<br>CCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCAT<br>TACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGA<br>GTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAA<br>GGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCA<br>CCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACC<br>ACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACA<br>TAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGA<br>GGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAA<br>CACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAG<br>GAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGAT<br>AAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGG<br>ATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAA<br>TAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTC<br>CAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATT<br>TTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCA<br>AGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATT<br>ATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAA<br>TAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCT<br>CTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAA<br>TTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAG<br>GATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTC<br>AAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACA<br>AACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCA<br>TCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCA<br>AAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATA<br>GATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATT<br>CCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATG<br>GATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCC<br>AAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGA<br>ACAGGCAACCTACAAAATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAA<br>AAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCA<br>TCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGT<br>GCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGA<br>TCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATG<br>TTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGG<br>AATATTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAA<br>AACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGT<br>CGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAAC<br>TAACCTGCACAATGTGCACATGTACCCTAAAACTTAGGGTATAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAG<br>GTAATTATC</u></font>caggaacagaaaggtcaaacttctctaatcagatttaatccaaataaaacctgtcccgagtcatattataatcaaattgtcaaagatcaga<br>gacaacagagacaaaaagatgatactaaaagcaacaagagaaaagaagcaaataccataagggagttccagtatggctagcatcagacttgtcaacagaa<br>accttacaggataggagagtgggataatgtgcacaagtgccaaaagggaaaaaactgtcagtaaagaatactatacccagtaaagtggttcttcacaagt<br>gaatgagatgtaaaggctttcccagacaaggaaaagctgaagaagttcataactagaaaacctgttttataagaaatgctaacagaacttgttc	UCSC;UCSC;UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA;NA	58;NA;NA	6460;NA;NA	251;NA;NA	NA;NA;NA	intergenic;intergenic;intergenic	
0	chr16	88251045	88253311	2000339	0	-	L1-16-55; RIP_L1_chr16_086_01	NA	NA	LINE	L1	L1PA2	agaaaaactctattggacacaaaattgtctttggaaggcatcatgaggctgctgaggtcatgtcaagtattggagaactctggagaggggagaaccagga<br>aggtgagcaaacatctacagatgctttctctctaggggagaaccaggaaggggagcaatgtctcaggtgccttctctctaggggcatctgccagttgtgg<br>gcacaggcaggaggctgagaaccttgagctgtacccacggagggccacttctggggacagaggaaagagctgagctcttggtggagacttgggctgcctg<br>aaggacctggccaggtttccccacaagtcacatgatgaaaactggggtcatgtggaaatgggatatatggaaggccccagggaagtaggttg<font color="green"><u>GAATTTCA<br></u></font><font color="red">TGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAATGTTTAAGTCTTTAATCCATCTTGAATTGATTTTTGT<br>ATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTG<br>TTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCGTTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACC<br>AGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGC<br>AATGCGGGCTCTTTTTTGATTCCATATGAACTTTAAAGTAGTTTTTTCCAAATCTGTGAGGAAAGGCATTGGTAGCTTGATGGGGATGGCATTGAATCTG<br>TAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCCTCTTTTATTTCCT<br>TGGGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTCAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAG<br>TTCACTCATGATTTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTG<br>CTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGTTTTCTAGATATACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTA<br>ATTGAATACCTTTTATTTCCTTCTCCTGCCTAATTGCCCTGGCCAGAACTTCCAACACTATGTGGAATAGGAGTGGTGAGAGAGGGCATCCCTGTCTTGT<br>GCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTGGGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCA<br>TCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGCGTTGTTGAATTTTGTCAAAGGCTTTTTCTGCGTCTATTGAGATAATCATGTGGGCAAGGACTT<br>CATGTCTAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATC<br>AGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTT<br>ACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGTACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAA<br>ATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAAC<br>AATAGGTGCTGGGGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCC<br>TCAGGGATCTAGAACTGGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCAC<br>ATGTATGTTTATTGCAGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATAC<br>ACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCCGTAAACTATCGCAAG<br>AACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCGCATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTG<br>GTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCACACCAGCATGGCACATGTATACGT<br>ATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAAAAAAA</font><font color="green"><u>GAAATTTCA</u></font>aacacagtcacaaggcaatgttta<br>gacttcaggacccatgaaagactggggccccaaggaacacatcacgctttccatagaaaactctaaaggatcagaaagctcaaaggagatagagtttgcc<br>aggctgcagccccacttgactcagcagagtacctggctggattaaggagaggagttactactgtctcatcctagcacaaggaagggtaaaccctctgtgt<br>gggaaaatagcatcagctggagcctccacgatgcattttattcaccgtgttagtattcaatcaaaaatcacatgtcatgaccaaaggcaggaccacacga<br>ccaaaaaccaagagaaaatacacaacttagaagcagatacagagatgatccagataacagattttgca	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr16	27050117	27050242	2000340	0	-	chr16-2695; RIP_L1_chr16_026_01	GCACCCCTTCTATCTCATGG	GGGCACCTAGAAGAGTAATTGG	LINE	L1	L1HS	tatcatgggagggacccagtggaaggtaattgaatcatgggggtgggtctttcctgtgctgttctcgtgatagtaaataagtctcatgagatctgatggt<br>tttataaagaggagttctcctgcacaagctctttcttccttgctaccatgtaaaatgtgacttgctcctccttgccttccaccatgattgtgaggcctcc<br>ccagccacgtggaactgtgagccaattaaatctcttgtctttataaattatccagtcttgggtacgtctttatcagcagtgtgaaaacaaactaatgcac<br>cccttctatctcatggggaaaataataagacccatcccattgggttgttaaaattaactgaatcaagcatttagaatagtgcctgagacacagac<font color="green"><u>AGTGG<br></u></font><font color="red">CACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGAAAGGAAAAAAAATAAATAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGTGG</u></font>tagttttaaaaactgttcaacattcaagaattatttatcaagcacttattaagtgccaattactcttct<br>aggtgcccagagtagagttgtgaacagagtaaaatcccttctttcatagaattttattgctattttttctctatggatgtccaaatgtttcggcattgtt<br>tgttgaaaagactatccttcctccattgaattacatttacaccttcatcaaaaattagctgcccatacttgcagggggatatttctgggttttctgtgct<br>attccattgatctgtgtgtctgtccttctgcctatatcacactatcttgaatactgtagctccagaataaatcttagaagtgagtagtatgattttctca<br>ctttagtctttttttcaaaattattt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	64	314	191	NA	intergenic	
0	chr18	12202434	12208459	2000341	0	-	L1-18-57; RIP_L1_chr18_012_02	NA	NA	LINE	L1	L1PA2	tccctgggtgaaccaggatctcctgggtgaaccaggagtcaacagcaaggacagaaacatgaatgtgcttttaaaagtcctaaaaattcagaggatgatc<br>atcaaggtttcctacagccctgggcaaaccttaggagtactttgtctccaggttcaagcatgtgcctgtgagaggcgtggccctcaccttccctccacca<br>caggttgagggaaccctaaacctcttttgcacaatatcaaggagtgctgactaatccaacgcagaagctgtgatgtttggcagatgcagaggcagaaaag<br>gtgttttgggaaagatcatctttaaacaacgcggcaccctcataagcccatagagacagttctcaccactacgccaataaacttgg<font color="green"><u>AAAAGACCAAACCA<br></u></font><font color="red">GCGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACCGGGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACAGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGG<br>GTGGAGCACACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTCGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGTGGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCTCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTGCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAA<br>CAAAGCTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACAATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAGCCAAGGCTCG<br>AGAACTACGTGAAGAATTCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATAAAATGAATGAAATGAAACGAGAA<br>GGGAAGGTTAGAGAAAAAAGGATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGCGGAGAATGGAACCAAGTTGGAAAACACTCTACAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCAGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGCGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATAACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAAACCCGTCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGT<br>ACAAAGCGGATCTAATAGACATCTACATAACTCTCCACCCCAAATCAACAGGATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTGAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGATGTTCTTTGAAACCA<br>ACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCGTTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTGAATGCCCACAAGAGAAAGCAGGA<br>AAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATC<br>AGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGC<br>TAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGAAATACAAACTAC<br>CATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAG<br>GAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGGGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCA<br>CAGCCAAATTCTACCAGAGGTACAAGGAGGAACTTGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTA<br>TGAGGCCAGCATCATCCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTC<br>AATAAAATACTGGCAAAACGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTTGTTCAATATAC<br>GCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACA<br>ACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTG<br>AATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCA<br>GGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAA<br>CCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATAC<br>ACCAGCAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATG<br>TGAAGGGCCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAAT<br>CAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAGTGACTTTCTTCACAGAATTGGAAAAAACT<br>ACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAAC<br>TATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAACGCCACA<br>TACCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATA<br>TGTAGAAAGCTGAAACTGGGTCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCC<br>TAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAA<br>ATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAATGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTAC<br>TCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCACATCAAAAAGTGGGCGAAGGACATGA<br>ACAGACACTTCTGAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAACGCAAATCAAAACCACTAT<br>GAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGT<br>TGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTAC<br>TGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATACACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCA<br>ACCCAAATGTCAAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTT<br>GTAGGGACATGGATGAAATGGGAAATCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAA<br>CAATGAGATCACATGGACACATGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGCGGGGAGGGATAGCATTGGGAGATATACCTAAG<br>GCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAGTGTGCACATGTACCCTAAAACTTAAAGTA<br>TAATTAAAAAAAAAAAGAAAAAAAAA</font><font color="green"><u>AAAAGACCAAACCA</u></font>aactttacacatatttcctttttctttttgattctatgccccctccctcagcctcccaag<br>cagcaggaataccctgaagggccctgggaacccttgcccactgagtcccacctggaaagcagttccctagctggagagtcctcctcatcagttatgctct<br>ccagcacccacactggagaaacacaaacaacaggagaagtcatttgagagaggctacccactcctactcccgctgaagccccactgcctcacacaggatt<br>ccctggtctttcctctgggttcacagatattcctgcagcctctctggccatagctttctactggaaagtcatttgctctcaccaggcccgtaatgctcct<br>tcccaaaggaacccagaatcaggttt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr18	12181628	12187773	2000342	0	+	L1-18-58; RIP_L1_chr18_012_03	NA	NA	LINE	L1	L1PA3	ccataaattgtgaccaatatgatttcaaaatatgatatggtagattaacattgaaaatgcaataaataaattagccaccataagaggttaatagaggaaa<br>aatatgattattgcaatagatacggaaattcatggaataacattcaccatatatttacaggacaactaccttataaactttaaatgacttattgcaacca<br>tctgaattaatgttgcttaaacagcatgtatcttggctgcttaaaaaccagataagaatttccataacattaatttatttataacaccatattgggtgtg<br>aacctatcataaagttcacccaactataaaggtacacaattgatgatttattaaattgacactgtgtgtagccatcaccatgatctaactt<font color="green"><u>AAAAATGTT<br></u></font><font color="red">TGTTTCTCTGGGGGAGAAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTCCCAGCATGAGCGACACAGAAGACGGGGGATTTCTGCATTTCC<br>ATCTGAGGTACCAGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGACAGTGGGTGCAGCACACCGTGTGCGAGCCAAAGCAGGGTGAGTCATT<br>GCCTCACTCGGGAAGCACAAGGGGTCAGGGAGTTCCCTTTCCTGGTCAAGGAAAGGAGTGACAGACGGCACCTGGAAAATCGGGTCACTCCCACCCAAAT<br>ACTGTGCTTTTCTGACGGGCTTAGGAAACGGCACACCAGGAGATTATATCCCGCACATGGCTCGGAGGGTCCTATGCCCACGGAGTTTCGCTGATTGCTA<br>GCACAGCAGCCTGAGATCAAACTGCAAGGCGGCAGCAAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAAGCAGCCAGGAAGCTCA<br>AACTGGGTGCAGCCCACCACAACTCAAGGATGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACTT<br>CTGCAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGT<br>GGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGTAGGGGCAGGCTGACATCTCACACGGCCGGGTACTCCTCAGAGACAAAA<br>CTTCCAGAGGAACGATCAGACAGCAGCATTCGCGGTTCACGAAAATCCGCTGTTCTGCAGACACCGCCACTGATACCCAGGCAAACAGGGTCTGGAGTGG<br>ACCTCTAGCAAACTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCAAAAACCCATCTGTAC<br>GTCACCATCATCAAAGACCAAAAGTAGACAAAACCACAAAGATGGGGAAAAACAGAGCAGAAAAACTGGAAACTCTAAAAAGCAGAGCGCCTCTCCTCCT<br>CCAAAGGAACGCAGTTCCTCACCAGCAACGGAACAAAGCTGGACGGAGGATGACTTTGACGAGGTGAGAGAAGAAGGCTTCAGATGATCAAACTACTCCG<br>AGCTACAGGAGGAAATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGACGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTT<br>AAAGGAGCTGATGGAGCTGAAAGCCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTTTCAGTG<br>ATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAACGAACAAAGCCTTCAAGAAATATAGGGACTATGTG<br>AAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGACGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCC<br>CCAACCTAGCAAGGCAGGCCAACATTCAGATTCAGGAAATACAGAGAATGCCACAAAGATACTCCTTGAGAAGAGCAACACCAAGATGCATAATCGTCAG<br>ATTCACCAAAGTTGAAATGAAGGAAAGAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCACAAAGGGAAGCCCATCAGACTAACAGCTGATCTC<br>TCGGCAGAAACTCTACAAGCCAGAAGAGATTGGGGGCCAATATTCAAGCTTCTTAAAGAAAAGATTTTTCAATCCAGAATTTCATATCCAGCCAAACTAA<br>GTTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGC<br>ACTAAACATGGAAATGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGCGACTAGGAAGAAACTGCATCAACTAACGAGCA<br>AAATAACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATTAAAAGACACAGAC<br>TGGCAAATTGGATAAAGAGTCAAGACCCATCAGTGTGTTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAG<br>GAAGATCTACCAAGCAAACGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAGCAAAGATCAAAAGAGACAAA<br>GAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAACAAGAGCTAACTATCCTAGATATACATGCACCCAATACAGGAGCACCCAGATTCATAAAGC<br>AAGTCCTGAGTGACCTACAAACAGACTTAGACTCCCACACAATAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAA<br>AGTTAACAAGGATATGCAGGAATTGAACCCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTC<br>TTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTGTC<br>TCTCAGACCACAGTGCAAACAAACTAGAACTCAGGTTTAAAAAACTCACTCAAAACCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAGTGACTA<br>CTGGGTACATAACGAAATGAAGACAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACACATTCAAAGCA<br>GTGTGTAGAGGGAAATTTATAGCACTAAATTCCCACAAGAGAAAGCAGGAAAGATCTAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAGAAGC<br>AAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAAAATCAGAGAAGAACTGAAGGAAATAGAGACAAAAAAAACCCTTTAAAAAATTAATGAA<br>TCCAGGAGCTGGTTTTTTGAAAAGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGATGCAATAAAAA<br>ATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCGTCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGA<br>AATGGATAAATTCCTCGACACGTACACTCTCCCAAGACTAAACCAGGAAGAAGCTGAATCTCTGAAGTGACCAATAACAGGATCTGAAATTGTGGCAATA<br>ATCAGTACCTTACCAAACAAAAAGAGTCCAGGACCAGATGGATTCACAGCCAAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAAC<br>TATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCTGGCAGAGACACAACAAAAAAAGA<br>GAATTTTAGACCAATATCGTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCAT<br>GATCAAGTGGGCTTCATCCCTGGGATGCAAAGCTGGTTCAATATACGTAAATCAATAAATGTAATCCAGCATATAAACAGAACCAAAGACAAAAACCACA<br>TAATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACCTTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAA<br>AATAATAAGAGCTATGTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGC<br>CCTCTCTTACCACTCTTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAG<br>TCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGT<br>CTCAGGATACAAAATCAGTGTACAAAAATCACATTCTTATACACCAATAACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAA<br>GAGAATAAAATACTTAGGAATCCAACTTACAAGGGACGTGAAGGGCCTCTTCAAGGAGAACTACAAACCACTGCCCAATGAATTAAAGAGGATACAAACA<br>AATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGTCCAAAGTAATTTATAGATTCAATGCCATCCCCATCAA<br>GCTACCAGTGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAACCCACATCGCCAAGTCAATCTTAAGCCAAAAG<br>AACAAAGCTGGAGGCATCATGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATC<br>AATGGAACAGAACAGAGCCCTCAGAAATAACGCCACATATCTGCAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAGTGGGGAAAGGATTCCCT<br>ATTTAATAAATGGTGCTGGGAAAACCGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACGCCTTATACAAAAATTAATTCAAGATGGATT<br>AAAGACTTAAACGTTAGATCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCGTTACTATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAA<br>CACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAG<br>GCCACCTACAGAATGGGAGAAAATTTTCGCAACCTACTCACCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAA<br>ACAAACAACCACATCAAAAAGTGAGCAAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAGACACATGAAAAAATGCTCATCAT<br>CACTGGCCATCAGAGAAATGCAAGTCAAAACCACAATGAGATACCATCTCACAACAGTTAGAATGGACATCATTAAAAAGTCAGGAAACAACAGGTGCTG<br>GAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAAGGATCTA<br>GAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTGTATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTA<br>TTGTGGCACTATTCACAATAGCAAAGATTTGGAACCAACCCAAATGTTCAACAAGGATAGACTGGATTAAGAAAATGTGGCAAATATACACCATGGAATA<br>CTATGCAGCCATAAAAAACGTTGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGGACAAAAAACC<br>AAACACCGCATGTTCTCACTCATAGATGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTGGTGGGGTGGGG<br>GGAGGGGGGAGGGATAGCATTAGGAGATATACCTAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAAC<br>CTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAA</font><font color="green"><u>AAAAAAGTT</u></font>actctcactgaagttctctcttgcccatttcaatccctactccca<br>tctccagccctaagcaatactgctctgatattctgtctgtataaatttcccatctgtgtaatagaaatggaatcatacaatatattatattgaggtctga<br>ctttaatcatttagttactatttttgaagttaattgatgctttagcttgtgccggtcatgtgttttccttttcattgcttcatagtccattgtgtggata<br>tataaacagtgtttattcattcatcagttgatggacatttaattatttctgttttttgtattatgaataatgctgctttgagcattcataatacagtcat<br>gtaatgtataataacattttggtcaatgatggatagcatgtatgat	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr20	29498096	29498597	2000343	0	+	L1-20-59; RIP_L1_chr20_028_01	NA	NA	LINE	L1	L1PA3	actgtatgcttcaatgggttatgaaactccccttgtagattctacaaaaaaagtttccaaactgatgaatcaaaagaaaagttcaacttttgagatgaaa<br>tcacacaacacaaagtattttaagaaatagcttctttatagtatttatcgcaggctattagattttccaatattagcctcaacaagctctgaaatgtccc<br>tttgtagattgcacaaaatgagtgtttccaacctatggaataaaaaggaaggtttaactctgtgagataaatccaggcatcacaaagcatattcacagat<br>ggcttatttctaatttttgttgtgggatatttggtttttcaataaaggcctcaagcactccgaaatgtccctttgtagattatataac<font color="green"><u>AAGAGTGTTTTA<br></u></font><font color="red">TGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCACTGTTGGATATTTGGGTTGGTTCCATGTCTTTGCTATTGTGAA<br>TAGTGCCGCAATAAATATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTTCATGTCCTTTGTAGGGACATGGA<br>TGAAATTGGAAATCATCATTCTCGGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCATTCATAGGTAGGAATTGAACAATGAGAACACA<br>TGGACACAGGAAGGGGAACATCACACTCTGGGGAGTGTTGTGGGGTGGGGGGAGTGGGGAGAGATAGCATTGGGAGATATACCTAATGCTAGATGACGAG<br>TTAGTGTGTGCAGCGCACCAGCATGTCACATGTATACATATGTAACTAAACTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAA<br>AA</font><font color="green"><u>AAGAGTGTTTTA</u></font>aaagtgctgaatcaaagcaaatgtgtaactctttgagaggaatccacacatcacaaagcatattttcagatcacttgtttctagtt<br>tttaaagcatgatattcggtttttcactatatgcctcatcaggctcagaaatgtctcatagtagattttacaaaaatagtgtttcctacctgctgaatca<br>aaacaaccgtttaaatctgtgagatgacgccaaacctcgcaaagcattctcacagacagttttttcctagtttttatcgcaggatattcggtttttcagt<br>ataggcctcaatgaactttgaaatgtccattcataggttctataaaagtgtgttcccaactccctgtataaaagcaaaggtttaactctgtgaaatgaat<br>ct	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr22	16995520	16998569	2000344	0	+	L1-22-60; RIP_L1_chr22_015_01	NA	NA	LINE	L1	L1PA3	caggccttttcagtcatgctatcagttttgttccttttttctgttttactcttggtggagttactttttttccttgttacttgaataagaaaaataacaa<br>actagaaggctgggtgcggtggctcacgcctgtaatcccagtactttgggaggccaaggcgggtggatcatgaggtcaggagtttgagatcagcctgacc<br>aacatggtgaaatcccatctgtactaaaaatacaaaaaaaatagccgtgcgtggtggtgcatgcctttaatcccagctactcaggaggctgagacaggag<br>aatcgcttgcatctgggaggcggaggttgcagtgagctgagatcgtgccactgcactccagcctaggtgacagagcaagactccatctcaaa<font color="green"><u>AAAAAAAA<br></u></font><font color="red">AAATCCAAAACTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACGTTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCA<br>GAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATTAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATAGATAGACCGCT<br>AGCAAGACTAACAAAGAAAAACAGAGAGAAGAATCAAACAGAAGCAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGAAATACAAACTACC<br>ATCAGAGAATACACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCAACACATACACCCTCCCAAGACTAAACCAGGA<br>AGAAGTTAAATCTCTGAATAGACCAATATCAGGCTCTGAAATTGTGGCAATAATCAATAGGTTACCAACCAAAAACAGTCCAGGACCAGATGGATTCACA<br>GCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATG<br>AGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAA<br>TAAAATACTGGCAAAACGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAACATACAC<br>AAATCAATAAATGTAATCTAGCATATAAACAGAACCAAAGACAGAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAAC<br>CCTTCATGCTAAAAACTCTCAATAAAGTAGGTATTGATGGGACGTATTTCAAAATAATAATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGAAAG<br>TTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAAGGGCATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTATA<br>TCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCACAGGCA<br>TTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCCCAATTGCTTCAAAGAGAATAAAATACCTAGGAATACAACTTA<br>CAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAATCCACTGCTCAAGGAAATAAAATAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGGT<br>AGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCAGCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTG<br>GAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGTATCACACTACCTG<br>ACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAAATCAATGGAACAGAACAGAGCCCTCAGAAAT<br>AACACCACATATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACAGG<br>ATACCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATACAAGATGGATTAAAGACTTAAACGTTAGACCTAAAACCA<br>TAAAAACCCTAGAAGAAAACCTAAGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAA<br>AATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGCGAACAGGCAACCTACAACATGGGAGAAAATTTTC<br>ACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCCAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAA<br>AGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAAACACATAAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCG<br>AAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGCGTGGCGATTCCTCAGGGATCTAGAACTGGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCATTATTCACAATAGCAAAGG<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CACGTCCTTTTTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCACTGGGAGA<br>TATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAAAGTATAATAATAATAAAATAATAAAATTAAATTAAATTAACCAT</font><font color="green"><u>AAAAAAAA</u></font>cagactagtaaatgcaaccatttacaaattccaagagactct<br>tgaagattctttttgttagtagggaaaacattctccatttttctgccaactttagggttttcagagaagtttgggggagagaaaggaaagcaaagatgtg<br>ggaagaaagagtacttgcagccccaagttgggcgaactcctcccagctacttataccacagggtttggggagcagagcccctttcattaaacttttagga<br>gtcttggatggatagggtgggaattacaccagtgaaactcagctttgtgtgtgccaggcattgggccctgggatatgcagtcatgtgttgtataatgaca<br>ttttagtcaatgacaaaccacacgtaagtcagtggtaccataagatgatt	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chrX	48118892	48120169	2000345	0	-	L1-X-62; RIP_L1_chrX_047_01	NA	NA	LINE	L1	L1PA3	aacaaatatgtcccctttctattcctgaaatgcacaaagatctctacccaagaacctgtctttttttcatcctatgttatctccgctcactgacaattgg<br>gaaagctctctgtgtgttggatgaggggtcactctttcaaactcacttccaagctcatcatggagaattggggttgtttgggaatgtgaagactatttgg<br>tttcaataaagtatggagaaacagcaatctttattacatgtgttcatcaccctctctcttaagatatttatccaatatctacatgctgttaatgaaacaa<br>tgtctggaagtttttggtggatctatacttttaatagtttctttttttttcacttttaaaattgtcttaactgtcctttgattcatt<font color="green"><u>AACAGTGTTTAGC<br></u></font><font color="red">TATCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGATTTTGCTGAAGTTGCTTATCAGCTTAAGGAG<br>ATTTTGGGCTGAGACAATGGGGTTTTCTAGGTATACGATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATT<br>TCCTTCTCCTGCCTAACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCAC<br>AGCAAAAGAAACTACCACCAGAGTGAACAGGCAACCTACAGAATGGGAGGAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTAC<br>AATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGGCATGAACAGACACTTCTCAAAAGAAGACATTTATGCAG<br>CTAAAAAACACATGAAAAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAAT<br>CATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGG<br>AAGTCAGTGTGGAGATTCCTCAGGAATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCT<br>GCTATAAAGACACATGCACACATATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAA<br>GAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGCAGGGACATGGATGAAATTGGAAATCATCATT<br>CTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACAAGGACACGGGAAGGGGAACA<br>TCACACTCTGGGGACTGTTGTGGGGTGGGGAGAGGGGGAAGGGATGGCGTTGGGAGATATACCTAATGCTAGATGATGAGTTAATGGGTGCAGCGCACCA<br>GCATGGCACATGTATACACATGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAA</font><font color="green"><u>AACAGTGTTTAGC</u></font>aagaacaac<br>atgtcttttaaaaaagaaatgtttcaaacacacagaatagtatggggaataatattgagttcagtcgcatctcaacattaccccatgactatgttagatc<br>tgatttatttatttagaatgttagaaacactagaaacggcctgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatc<br>acctgaggtcaggagtttgagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaattaggtgggcatggtggcgggcgcctgta<br>atcccagctactcaggaggctgaggcaggagaatcgtttgaacccgggaggcagaggttgtagtgggctgagactgtg	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:SSX1:NM:005635:4/8	
0	chrX	16427697	16428212	2000346	0	+	chrX-1618; RIP_L1_chrX_016_01	GGATCAAACAGGGCTGGATA	TGGATGTGTCTTGGTTTGGA	LINE	L1	L1HS	cttcttttccgatgttttccacacacagatgtattaacactgttctttcaaggaaagcatggagagctctagctgatcaaatgaagtgctctcagactag<br>agcaggcaaggataatgtatcaagtatccattacgacctaacaaaccaccccaaaacttagggacttaactgctattttgtttgcttatcagtctatcag<br>caatttatgctaggctcagctgagtggttcctctgctgatctgggcttgggtcactcatgtgagtatagtcatcaggtggatcaaacagggctggataca<br>tttttttttttttggtgcttctagacaatttttatttatttatttattttgagacaggctctcactttaagggctggataatt<font color="green"><u>TAAAACAATGATTATCG<br></u></font><font color="red">CATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTG<br>GATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACC<br>ATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGG<br>GGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACTAATGCTAGATGACACATTAGTGGGTGCAGCG<br>CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAACAATGATTATCG</u></font>gtaacaattataattaggttgaccatgtaatttgtagtccaaaccaagacacatccaaagtaaaatg<br>ggagggtctaaaataaatgaaatatttatttcatttaatttttttaacatttaaatatttaaaatatttaatatcttattttgaaataaaatatttcaaa<br>aaaagacatgaaatcaacctagatgcccatcagtgatagactggataaagaaaatgtggtacatatacaccatggaatactatgcagtcataaaaaagat<br>gaaatcatgtcctttgcagcaacatggatgcagttggagaccattatcctaagcgaattaatgcagggacagaaaaccaaataccatgtattctcactta<br>taaatgggagctaaac	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	712	177	NA	intergenic	
0	chrX	31098368	31098369	2000347	0	-	L1-X-64; RIP_L1_chrX_030_01	NA	NA	LINE	L1	L1PA3	aactcactcaaaaccacacaactacatggaaactgaacaacctgctcctgaatgactactgggaacataacgaaatgaaggcagaaataaagatgttctt<br>tgaaaccaatgagaacaaagacacaacataccagaatctctggaacacatttaaagccgtgtgtagaaggaaatttatagcactaaatgcccacaagaga<br>aagcaggaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataa<br>ctaagatcagagaggaaatgaaggagatagagacacaaaaaattcttcaaaaaatcaatgaatccaggagctggttttttgaaaagat<font color="green"><u>CAACAAAATTGA<br></u></font><font color="red">GAAAACCGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGATGGATTAAAGACTTAAAGGTTAGAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCCAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATAACCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGAAAATGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAGACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATATGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCAATTCCTCAAGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAAT<br>AGCAAAGACTTGGAACCAACCCAAATGTCCAACGATGATTGACTGGACTAAGAAAATGTGGCACATATACACCATGGAATACTATGTAGACATAAAAAAT<br>GATGAATTCGTGTCCTTTGCAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCTCAAGGACAAAAAACCAAACACCGCATGTTCTCAC<br>TCATAGATGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCA<br>TTAGGAGATATACCTAATGCTAGATGACCAGTTAATGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACATTGTGCACATGT<br>ACCCTAAAACTTAAAGTATAATTAAAAAAAAC</font><font color="green"><u>CACCAAAATTGA</u></font>tagactgctagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaa<br>taaaaaatgataaaggggatatcaccaccaatcccacagaaattcaaactaccatcagagaatactataaacacctctatgcaaataaacttgaaaattt<br>agaagaaatggataaattcctggatacatacaccctcccaagactaaaccaggaagaagttgaatctctgaagaccaataacaggctctgatattgaggc<br>aataattaatagcctaccaaccaaaaagaagtccaggaccagacgaattcacagccgaattctacaagaggtacaaggaggagctggtaccattccttct<br>gaaactattccaatcaatagaaaaacagggac	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chrX	69820866	69820867	2000348	0	+	L1-X-65; RIP_L1_chrX_069_01	NA	NA	LINE	L1	L1HS	agtaaagctctcctcagcaaatgtaaaagaccacaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagactcact<br>aaaaaccgctaaactacatggaaactgaacaacctgctcctgaatgactactgggtacataaggaaatgaaggcagaaataaagatgttctttgaaacca<br>acgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgaccacaacagaaagcagga<br>aagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcaagagcaaacattcaaaagctagcagaaggc<font color="green"><u>AAGAAATAACTAAAATCAG<br></u></font><font color="red">GGAGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAAAAAATACTTTA<br>TAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAACAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGAGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGAC<br>CACAACAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGGTACATTCCTCGACACATACACTC<br>TCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGTCCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACA<br>TTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCA<br>AGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCC<br>TTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCA<br>CAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGT<br>GTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGCTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAATAAAGAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAACTAAAATCAG</u></font>agcagaactgaaggaa<br>atagagacaaaaaaacccttcaaaaaattaatgaatccaggagctggttttttgaaaggatcaacaaaattgatagaccactagtaagactaataaagaa<br>aaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccaccgattccacagaaatacaaactaccatcagagaatactacaaa<br>cacctctatgcaaataaactagaaaatctagaagaaatggataaattcctcaacacatacactctcccaagactaaaccaggaagaagttgaatctctga<br>atagaccaataacaggctctgaaattgtggcaataatcaatagcttaccaaccaaaaagagtcca	Other	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intron:TEX11:NM:031276:24/30	
0	chrX	146559254	146559345	2000349	0	+	chrX-1462; RIP_L1_chrX_146_01	GTAAACGACAGGCAGCAGGT	GAAGCAGCCATGCATACAGA	LINE	L1	L1HS	aatgtgaaaatgggttctgtaatagctgtaaaaaggcctggcccaagaccactgtgagctagaaaagggagagagatagtgggaaaagaggtgagccgca<br>gatcgattcggtagacggtgtgtatgcccctctctatttgacttcacatacactcataactttccaaatagagttactttcttaaaccatacaagaattg<br>gaagaaccagtttgatttgttaaaccgttatttcttacaagctttacctgctgttacagtaactactgttaacctaatagaaaattgagtactttgaagt<br>agggtcatactataacaaaatcttaaaatatttggcattggtttagagggtaaacgacaggcagcaggtgatgaggaaatagacat<font color="green"><u>AAGAAGCTAAACAA<br></u></font><font color="red">CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCT<br>AAACAA</u></font>attggagtggtgtatcattccagaacaagatactgagcaaaactattgcctatgataacttgtaagacgcaacatgtacctattaaactggtag<br>ctcttggagaaaaatggctttaaaagcattagtctgtatgcatggctgcttcttgtgtttggcaaggtgatagtaacttgataggtttagttaggcatta<br>caagaaaattatgagctcagaaaagaattgcgaattttccaaaaattacttatttgtattcatctatgaaaaactattgggtcctaaattggcaccagca<br>aaaagcgtattgcaaaacctgggcatctcccatgaaagagaatgttccccctacatccatgataaagccaagtaccaaagaccaccagagaa	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	63	303	197	NA	intergenic	
0	chrX	90948634	90948888	2000350	0	+	L1-X-67; RIP_L1_chrX_090_01	NA	NA	LINE	L1	L1HS	ttaattgactcttcctttcatgaaagatttctctgtggcacgtgatgctgtttgatagcattttacccacagtagaacgttcacacttggagtcaatcct<br>ctcaaactctgccaccactttatcagctaagtttatgtaacattctaagtcctttgttgtcatttcaaaaatgttccacagcatcttcaccaggagtaga<br>ttccacctcaagaaaccaatttctttgctcatccataagaaccaactcatctgctcaagttttatcatgagattacagcaattcaggcaaaccttcagtc<br>tccacttctaatctagttctcttgctatatccaccacatgtgcagtttttctattggaaaaagccttcttttccaatagaaggctatttcatcc<font color="green"><u>AAAAAA<br></u></font><font color="red">CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAA</u></font>gaaaatctgttgtgtagtgtagctaccttcattaattaa<br>cacaatcttcagcagcttgctgcagcttctccctcagcacttgatgcttcaccttgcacttttatgttatgaagatggcttcattccttaaatctcattg<br>aaacaacctctgcaaaattcaaacttttttcctgctgctttctcatctctctgtcttcattgaattgaagagggttagggccttgttgtggattaggttt<br>cagtttaaggcaatgatgtggctactttgaccttctattcagattactcaaactttctccatatcagcaataagtctgcttattcttcttatcattggtg<br>cgttcagagtaacactttcaatttccttcaagaacttttccttgatattcacaat	UCSC	<UL><LI>Konkel MK, Wang J, Liang P, Batzer MA. Identification and characterization of novel polymorphic LINE-1 insertionsthrough comparison of two human genome sequence assemblies. Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17034961">PMID:17034961</a>.</LI></UL>	C:Reference 	NA	NA	NA	NA	NA	intergenic	
0	chr5	33797555	33797556	2000351	0	+	AC008826; RIP_L1_chr5_033_01	TAAGCCTTTATGTTCACTTTTTATG	CTCCCCAAAGCCAAACTTCAC	LINE	L1	Ta1d	ctctgagaaaccttcttctataaaggcatctctaaatccaggcatgaaaaaataatatcctgataacaagaatgtgaacaagcaactctttacatcacgt<br>caacaaatctagatgcctagcctcccacagccccatgccagttgctagcaagaagaatttagacttcacttttacagaccttgagtggtcaagggtctgt<br>aatcttcctggccaagcctgttgaagagggctcctgccctataaaatgggaggatatgccattgacactggagactaattaaatgctatctcctggagtt<br>ataagaaatagggaagttagtaaacactggaattaaagaagttgtgaacagagtgtgtaactgctagcactttgataaatcttttctctaaaataaaact<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>cttatacaaccaatctgaaacacaggagaaagattctgggatccagagggacacagcgagattgaccctgagttgaccat<br>ggctgagcgcagaagccaaagtgagctggcttttaatgtcagaacttagtgatgaaggttccccacagagaaattcagtacattcccaaccactctagac<br>tatgttcgcattccttataaaatatgataaataataccttacttacttgggttgtcgtaaggattaatggaattgtatttgtaattatttctagcacaat<br>aaatactgatgtgttttcttcttcttaaaaaaaagttactatgaatatttctcaagctattatggaacctgaatgagtactaaatagagagcatagccca<br>actccacaaatatgctacac	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intron:ADAMTS12:NM:030955:2/24	
0	chr2	36570420	36570421	2000352	0	+	AC009414; RIP_L1_chr2_036_01	ACTCGGTGACTTCGTGCCTC	AGACTCCCACAATTTTATTTTAGG	LINE	L1	Ta1d	tacaggcgtgagccaccgcgcctggccctaaggcacttttaaaatgagtgttttactgctctacttgcagataagcttccctgatgatatgcttagactc<br>ccacaattttattttaggaacttaaaaaaaaaagtttataatgagaaacaaaccaaaaggaactctccctttactcctttggtggctttcagaatgtaac<br>aagaagaaagatgtttacatctttgcacagttctttttttaaatttttattttttttataatttcaacttttattttagattcagggggtacatgtgcag<br>gtttgttacaaggatatattgcatttgcacagttctgacactgacaaatgcagtatctgcatcacctagacaggttttagatagctgaggaacaggacaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>tgatgaaatcaatttatcactttaggccagtttgtctcatttccctggccatttcagcatttaagaagacaaggagatgg<br>gaaagacctagaagctctattggtcagtaggccttaggtgaactcatggttctgaataaggtaaatggccaccacccaaagcagcaagtaaggacatgga<br>agtaccatacaacctagcaggatgttctaatgtggaatacgataaacagaccagattcagtgtacaatgagttggttctagattgagagcactaccgtgc<br>cacagtgaggcacgaagtcaccgagtcccagatctgaatcctaacccaggcgcatgcattatgtcctcagaatatttatgtaatttctgtgaagcttttt<br>ttcacagttccccatctgta	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr18	51451059	51451060	2000353	0	+	AC087224; RIP_L1_chr18_049_01	TCATTGGTTTTAGATGTGTCTGCAA	CCCTCATTGGAACAAGAATCAGA	LINE	L1	Ta1d	tccagtgattcaagaagtccaacaatcccttatcctataacagtgaaactacagaaaaattaaagacaaaaaatattaagtcaatcagaataaaaaagta<br>ccctcattggaacaagaatcagagacagtgggagctaaatgatgagaacacatggacatatagagggaaaccacacacactggggcctgttggcgtgtgg<br>agggtggcagtggagagagaatcaggaaaaataactaatgagtactaggcttaatacctgggtgatgaaataatctgcacaaatacccatgacacagatt<br>tacctatgtaaaaacctgcacatgtacctctgaacttaaaacttttgaaaaataaaaaatgtttagcaattaaaaaaaagaattacaaatagttgaattc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ttaacagcaataatgaaaaccggaaagcggtgagaaatacctataaggtaccgaaggaaaactaccaattttctatgaaa<br>aatttaatccataatggagacaaaatgaagacactgtcagacaaacaatatctcagctaatttgccacttgcagacacatctaaaaccaatgatgagtta<br>atgaccattcttggattaatttctactccaggctgaaagaaaagaacaaaaacaagaaaacagatgcagcctccaagattctagaagaattgaaagcaat<br>gagtatagtaaatatatggataaatcaaatgtattttggatgaataaaataataatagcagtatatcatgtttaaatatgatacatttttatattaaaat<br>atgtgtataatatacaaaaa	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr6	16079560	16079561	2000354	0	+	AL021407; RIP_L1_chr6_016_01	TCAAACTCTCCAGGCAACAGG	CGGGAAATGGTGAAGCTAAGG	LINE	L1	Ta1d	aaaaatctttgcaaactgcaggtcaaactctccaggcaacaggtaaggagatttttatattttctcttttctcccttatataaaaggagaggcaagagta<br>tttcctcctgcagattgtaaattagttcaggccctatggaaagaagtttgcagatttctcatagaactaaacatagaattaccattcgacccagcaatca<br>atctcattaatgggtatatacccaaaggaaaataaatcattctaccaaaacacacatgcacatgcatgttcctcacagcactagtcacaatggcaaagtc<br>atgggatcaacctaggtgcctatcaacagtggactggataaagaaattgcggtacatatacagcatggaatactactcagccatacaaaagaatgaaatc<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>atgtcctttgcagcaatgtggatgcaactggaggtctctatcctaagtgaattaaacacagaaacagaaaaccaaataac<br>acatgctctcacttataagggagctaaacattgggtacacatgggcataaagatggaaacagtatacactggggactccaaaggaagggaggtggggagg<br>ggagcagggattgcaaaactacctattaggtactatgctccttacttgagtgacagggtcagtcacaccccaaacttcagcattacacaataagctcatg<br>taacaaacttgcacatgtaccctctgaatccaaatttttttttaaaaaaagaatatttcctcctacagaagtggtagcagttatgacctagcttcaccat<br>ttcccgaggcaagatgaata	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr14	59220403	59220404	2000355	0	+	AL121819; RIP_L1_chr14_058_01	AGAAAACGCAGTTCCAAGCAAAA	ATCCCCATTACCACATCTCATTT	LINE	L1	Ta1d	tattttaattgcaaatttaaaaattcccaatcttgtgattttcttccaaagcagttgttactcagctcctaacacttctcgtattctacacgtctttaat<br>cactcttttcacttttgcctcagggaagcaatatccaatttacgaacatgtttttttctaaaagattatttgtaaactggttattgggaactaaaaatac<br>atttttccatagaagttataacgttgtaaatagcagttaaaatctcaacagactcttcatacagtaaaactcattaataataatatacagctattactat<br>aaggaagtgagttcctcattctaattctaaattgagcctctacctaatcaattaactcctgtgggctcatgattgttctaatcaaaaataagagaacagg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>ccaggcatgatggctgatgcctatagtctcagtgctttgggaggctgagatgagaggattgcttgaagccagaagttcga<br>gaccagcctgaacaataccgtgagaccctatctctacaaacaataaaaattatctgggtgtggtggcatatatttgtagtactagatacttgagagactg<br>aagaaggaggaccccttgagcccaggagtttaaggctgcagtgagctatggttgtgtcactgcactccaaacagaggaaggtcctgtctctaataacaat<br>aataaaaatagaactattcaaatcaagaaatatcaagtgtttgtgtggaatgcaacttaagctcaatattataatgtcacacagaatggcatgaaggcaa<br>ttaggccagggtccgggggc	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr9	111564970	111564971	2000356	0	+	AL358779; RIP_L1_chr9_108_01	GACAATGGACAGTTGAAAATATGA	GGGATGATTCTATCTGATTCTAC	LINE	L1	Ta1d	gggatatctttccagttttttttgttgttgttgtttgtttttcatgtctgacacccatatagctccacctggacccatggctccatccagaccaacaact<br>ccacttttgtggccccacccagaagcaattcggatcccaagaggacagcttcaaccctctatgatttcctctccatcccaatcaaaaatttttgaaaagc<br>attgttttctttacccttaatattttttcaaaaaaagacaatggacagttgaaaatatgaatactattaataagtatgggattacaaactgaatatattt<br>aagaaatattagggatgttgaaagtggaaaatcttaaaccttattggtttattgagctagttaatggtgtttttcaattgtgactacaataacaaaatta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>nnnnn</u></font>actacaataacaaaattaaagaacttatatgaaatgttggagagatagcctcaaagattgtgactaaaagacaaggtatt<br>atttgagactatatttcagctattaggtttacgatcttcaccttatacctggtctatctattcttggatgtgttcaacttttgcataagcattcaggaag<br>gcgtatatgtataaaagtaaggaattgcctacaacctggccttttccatagctgtgatagtgcttcacacagtagaacacacccaggaaataggcaagcc<br>agtgcagacccaggtgcaggcagcacctaaaccacgcaggtgtagaatcagatagaatcatccccagacaccaggtcaaagtgaggcccaagtcaacaaa<br>ctcaagaggccttgagagtg	Other	<UL><LI>Badge RM, Alisch RS, Moran JV. ATLAS: a system to selectively identify human-specific L1 insertions. Am J Hum Genet. 2003 Apr;72(4):823-38. Epub 2003 Mar 11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12632328">PMID:12632328</a>.</LI></UL>	E:Retrotransposon display:ATLAS; E:Insertion-specific detection:PCR	 TSD unavailable	64	NA	NA	NA	intergenic	
0	chr4	141603230	141603231	2000357	0	+	AF417122; RIP_L1_chr4_141_01	NA	NA	LINE	L1	L1HS-Ta	caatttacttcacatggccactttctgaaacagagatctgactacagtattcccaccttataatcttccacaggctctcagtgaaagagaaaagaaatct<br>gcactgaatcttaacccataaaatctgctctcaatcttcccaagtcaacctttccaggtccagcataaataccaccttccctgtgaaaccagcccaattc<br>caaatgggttctaagcattctcacgtctatgttgtcttaatttacatgctggcagaaaatagcatgtttatatgtccttctaccactaaatatgaattcc<br>aaagataaaaagaatgtctcgaacattttaatcaccaatatctagcacctaaaagatgttcaatattactaaatgaatccatgttgttgtttttccaaat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATTATTAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>taaaagatatcttaaggggccatatcttagtctttattgtataatccagagttgcagatttctaa<br>atctacaattgttttggagttagcaatgcctgagaaattaggtaccaagttgctaacttctgttcctctgtcatactggagggcattatggatagcaata<br>gaagtagcaatgtgcttccctggaaaaatatctaacataaggatattttcctctatttaccactgatatcactctaccaagagaacaaagacattaagct<br>cgatgaaggccaggagggagctcaattttggacccaggctattctagggacaagcaggcgttggtagtgttactttaagaacttcagacaactgaaggca<br>gcatgagggcatgggacccgtgggtgggaaggaga	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:TBC1D9:NM:015130:3/21	
0	chr17	32813611	32813612	2000358	0	+	AF417126; RIP_L1_chr17_029_01	NA	NA	LINE	L1	L1HS-Ta	tagatgagtagagtttcagttgcgcaagatgaaaaaattctggagattggttacacaaccgtgtgaatatatttaacactactgaggtgtgcacttacaa<br>atggttaaggctgggtgtggtggctcacgcccataatcccagcactttgggagactgaggtggcaggattgcttgagtctaggagttcgagaccagcctg<br>gcggacatggcgaaaccccatctctagaaaacatacaaaagttacccaggtgtggtggtgtggtgcctgtagtcccagctactccgggggctgaggaagg<br>aggatccctttacccaggaggttgaggcagcagtgagctgtgactgtgccactgcactttaacttgggcaacagagccagaccctgtatcaaaaaggtaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTNTAATAAAAAAAAAAAAAAAAAGGAAAGA<br>AAAAAGGCATTGTAGACCAAA</font><font color="green"><u>nnnnn</u></font>aaaaaaaaaaaaaaaaaggttaagaaggtaagatggtaaaatttatttatgtgtattttgtcacaatttaactt<br>aaaaaaaaacagaaagagagcctatgtccaggagctcaatgcggaggtctgctacatcttgcatttcaagtatatttcctaaaaaaaaaaaagagaaaaa<br>gacaccaaggagacttgttctttgaatgaaattgttgtacagccttttgtggcatgaagaattctgtgagtaagaaaagcatcctcatccagcctgtctg<br>tgtcggttagagactagcacgttttgcaaaaacagcacattttctcctcatgatgcgataagcatcgagctggcaccctacctgctagtgtgaggctggc<br>gcatgaagcactcctgctgggagagt	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr6	108786473	108786474	2000359	0	+	AF417127; RIP_L1_chr6_108_02	NA	NA	LINE	L1	L1HS-Ta	tcagtgggtagactttcttgtttgcattgtctgcacaaaggcctactttatagtagcatcccactgatggggcaattactcagaatggagctgtttcaca<br>ggaatgaaaggaagtcacttaaattctttatccttactcagtgtctgtctctccttaggagaaggaagaggagatgatttatagcaactgaacttaattt<br>atttatttccacctgatcatttttatgctacccaggtcactattagtcaagatactcttctttgtggttaaaatggaattatacaaagctgaacgggata<br>ttttcttctatgctatgtgacattatattcttgtggccccaaaagaaaactctaaatttagctccttatttacactgaaaaagaaaatcatgttaaattt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTACCCTGCACAATGTGCACATGTNCCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>agtgccg<br>tcttcatgctgtggtctttccatacaactactgttgactaccagatgtctctacttcctcaaattttactggttaggctggaatatctttcaattatgtt<br>tacagtttgagtttaattttaatcactgtttgtatttttatataatctatatccttgcatattttttgtacatttgtttttcatataggcttgttgctga<br>ccttaggtcttatgtcccaaataccagatttttaaaaatgagataatcctggtccttctttagagcctcacaagcatggatatatttctgaatagagatt<br>tttagtgtaaggcaatgttactatctttttaaatggtttcactacagaactaacaagagggccctagagtcatagagtcactgctgctgctgc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:LACE1:NM:145315:8/13	
0	chr5	33797189	33797190	2000360	0	+	AF417128; RIP_L1_chr5_033_02	NA	NA	LINE	L1	L1HS-Ta	tcttccctttcctaagtttatcttgaaagtatatatgtgctgagatcaagcctatggcaacctggatcctgtagggtctatgaagagcaggaaaagaaat<br>ggtgcaaggagcaacttcaaaagcctccccaaagccaaacttcaccctcatcatcatttgattaaaaaacataaaattatgtgctttcaaatgagagctg<br>tggactccctaagtccagcctttgggaatggaagactggatgatgaactcagtgattgttgatggatagagactccttcaaggaagcttgacttctctcc<br>aactactggatcaaagcatgtccaaattgaaaggcaaaaacctcacagaaggcaggactgagaggactctgagaaaccttcttctataaaggcatctcta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>nnnnn</u></font>aatccaggcatgaaaaaataatatcctgataacaagaatgtgaacaagcaactctttacatcacgtcaacaaatctagatgcctagcctcccaca<br>gccccatgccagttgctagcaagaagaatttagacttcacttttacagaccttgagtggtcaagggtctgtaatcttcctggccaagcctgttgaagagg<br>gctcctgccctataaaatgggaggatatgccattgacactggagactaattaaatgctatctcctggagttataagaaatagggaagttagtaaacactg<br>gaattaaagaagttgtgaacagagtgtgtaactgctagcactttgataaatcttttctctaaaataaaactcttatacaaccaatctgaaacacaggaga<br>aagat	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:ADAMTS12:NM:030955:2/24	
0	chr13	86921410	86921411	2000361	0	+	AF417129; RIP_L1_chr13_085_02	NA	NA	LINE	L1	L1HS-Ta	gaaaaacacaaaaatagtaaattaagaaaattttgatatatttagagaagactagtagactaatgtgagaaaaaatacactaatagttcaaaacaaaaat<br>taaaaaatatataatttgagactaaggtatgtgtaaggtacatgggtgtactttggtcaacaataggctgacgcagacatctgagccagagtgactcagc<br>gagtttggagtgcaggtatataactccacttgttatataacctgtttgtgtaagctcatacatggcttggagccactattgtttgaaaaagatataactg<br>ccctgctgacactgtataggcactcttgcagccagagaaagagagagtgctaaagctgtccatcttgtagacggacagggggaagctagggcatggcaca<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAGGAT</font><font color="green"><u>nnnnn</u></font>gctcgtctcacacacacccagagagacagtattgctactgacccctgtaaaggagagccagtcaccttgaaggccagc<br>aggggggatccagaaaccagcttgtgcccagagggaaagagttaagctgctgactctgacagagctggccttgcaggccagggagtacagcttcaggcat<br>gggggtggcaggagccacagagccggctgctgatatgagacacagctggagcagaaagctgagttaaaggcggacagcatgagacagctagcgtgagtaa<br>gctgctaatgagagagctgctgaataaaactacatctcacctgcctacccctgaaatggggtaaaattatatgaattattaaattaagtttagcctaaag<br>ctgtgtccttacatattttaag	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr20	41951331	41951332	2000362	0	+	AF417131; RIP_L1_chr20_041_02	NA	NA	LINE	L1	L1HS-Ta	aagagaggcatgcttcaactgcaagaaaataaaagtgttccaagcagtgaaatatttgaccttggagtaaactgctataataagtagtatgctcccttca<br>ctcacagtatttcagtcgggctgaaagatcatcggggtgcctagaggagaagttttcatgcacttctcaaattctatgatgctccaaatcagagggttgg<br>acaaaataattgtgcttaaaacctgcccttgtggtcctcttgtctcatataacacttagcaatctctctctttgcagactggctgaaatgcaatgagagt<br>gcctgatgacacataatttttggcacagaattcacgacattcatctcaaatgtccaagctactactataaattaacagatcttcacacacacacacacat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGCAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAGAAAAAAAAAAAAAAA</font><font color="green"><u>nnn<br>nn</u></font>acacacacacacacacacacacatagctcatctcaaaagtgtgagagaacttccgaaccatgtgagaaaaccaaggcttttggaagaatatggctctg<br>cgtctgtcaagtcaggaatccatccttctagaagggcacggtagtcagaggaaagtcccctctcctctaacacacacacgttgatgtccacctcctaatc<br>cccagcacctgtgaatatggtaccttacaaggcaaaagggactttgtaggaatgattaagttgaaggactcttagatgggtgacattcccctaggttatt<br>tcgctcctccagtcgaatcatgtgagtcctcataagcagagatgcctctcctgactgcagtcagagaaccagagaggcgcagcaggagaagaacttggcc<br>ac	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr14	45174254	45180307	2000363	0	-	AF417133; RIP_L1_chr14_044_01	NA	NA	LINE	L1	L1HS-Ta	acattaatgtaaggtatatttataatcataatagattttaagaatttaccgaagaggataggtaagtagaagtaaatgaaaaggccagatgcggtggctc<br>acacctgtaattccagcacgttaggaggcggaggcaggtgggtcacttgaggtcaggagttcaagaccagcctggccagcatggtgaaaccccatctcta<br>ctaaaaatacagaaattagccgagtgtggtggtgcatgcctatagtcttagctacttgggaggctgaagcaggagaatcccttaaatccgggaggtggag<br>gttccagtgagctgagattgagccactgcactccagcctgggtgacagattgagactctgtctcaaaaaaaaaaaaaaaagaaaagaa<font color="green"><u>AAGAAAACATAG<br></u></font><font color="red">GGTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGGGTGAGCGACGCAGAAGACCGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGTGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAACTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCTATCTGTACATCACCATCATCAAAGATCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAATGGAAC<br>AAAGCTGGATGGAGAATGACGAGCTGAGAGAAGAAGGCTTCAGAGGATCAAATTACTCTGAGCTACGGGAGGACATTCAAGCCAAAGGCAAAGAAGTTGA<br>AAACTTTGAAATAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCGAAAACCAAGGCTCGAGAACTAC<br>GTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGTTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTT<br>TAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGAT<br>GTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATAC<br>AGAGAACGCCACAAAGATACTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGC<br>CAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACTCTACAAGCCAGAAGCGAGTGGGGGCCAATA<br>TTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAACTACTTTATAGACAAGC<br>AAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAA<br>TCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCAACAGCTAACATCATAATGACAGGATCAAATTCACAC<br>ATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTA<br>TTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGT<br>TGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAG<br>GAGCTAACTACCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACAT<br>TAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCA<br>AGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATA<br>GTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGA<br>ATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTT<br>TGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAACGCCTACAAGAGA<br>AAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTGGCAGAAGGCAAGAAATAA<br>CTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGA<br>TAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATA<br>CAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGAC<br>TAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGA<br>TGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTTATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCGTGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACGCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATCGTTTAT<br>CTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGTTAAGCAACTTTAGAAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGCACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCGTCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAAGAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGAGAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTGACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAA<br>ATTGACAAATGAGATCTCATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCA<br>CAACCTACTCATCTGACAAAGGGCCAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGGGTGGCGATTCCTCAGGGATCTAGAACTGGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACGTTAGTGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAACAAAAAAAAAAACATTAAAAATAAAAAAAATAAAAAAAAAG</font><font color="green"><u>AAGAAAACATAG</u></font>ataagattgcgggaaaattggaagctaattcata<br>gtgtggcttgtatattatttgaagcagaaggacagaattaaagctgcccaaaccaaattaagccaaaaccaaaacccaaacaaagtaacgctcaattgaa<br>ccattttagttgttactgtccatcttaagaatacattcattatagctttcttctcagaagaacctctggacagtgtttttggttctaatataattgtaga<br>aagaatgttgtaaatatacagtgaatatcccacagaccttcctattttagtcccagaggccctctctgccccaggctgggtcctcctggtcaggctctgg<br>atagtcctggtaatagtaatgccactatttctgttatgttgtaaaatagcaata	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr13	72968677	72968678	2000364	0	+	AF417135; RIP_L1_chr13_071_01	NA	NA	LINE	L1	L1HS-Ta	ttaaaaaactgaactgatggaagcatagaatagaatagtagttacctggggctgggttgagaaggagagtagggtgaaatgctcaaaggatacaaaattt<br>caattagataggaggaatacgctgaagatgtctcttgtacaccattgtgactattgttaataacaatgttttctattcttggaaattgctgagagtaaat<br>tttaagtgttctcgccacaaaaacgataagtatgtaaggtaatgcatatgttaattagcttattttaggcttctacaatgtatacatatattaaaccatc<br>atattgtacatgataaatatataaagtcaaaatttttgatgaaaataaattaccaaagctgactcaaagtgttatccaatctaacaactatggaatgtaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAATAAAAAAAAAAAAAAAAG</font><font color="green"><u>n<br>nnnn</u></font>gaaagtagaactaccaaacagctacccctgaaaatgacacggggcccatatttttttaatagacaaactttactgattatccatttgaaagacaaa<br>tcattcctacagatgctttaaaaggtattttcaaaagcattaaagaaatgaaaaatatcaccattcattttacagtattaacattactaaagaaagaaaa<br>tttcaaggaaagaaaactgtagagcaaattcatttaggactgaaatacaaagcatccttaaacaaacaaacaaaatgaatccataacagtattcttaaag<br>gttagcaaacaccgtgaccaaataaagatcattttaagaatgtaaagatagtttgctcttattatataatcatctcattagatacccagaaggtatttaa<br>taag	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr6	55594908	55595130	2000365	0	-	AF417136; RIP_L1_chr6_055_01	NA	NA	LINE	L1	L1HS-Ta	aacagaaaaaagtgctaccagtggaccagaaagttttaacaaaccctggaaaccaaaaagtaggtggaatgggattaatggagaaaacagagcagaagaa<br>ttcaagccaagattccagaagtgagagcaatcaatcctgatggagcccatgagaaattctaaactcaatgacatcaacacaaagaataggagagggtcct<br>gggaatcatcatggaaattaattaattaaacaactgctttattaatagctgggcctagagagaccttttcctttctcctcctctggaatatatgcagatg<br>atatggctgacagcagtagtatttgcctccaagctagaacctaacacttgtctggagaggtattctagaatgagttttggcctgagagagaagtag<font color="green"><u>AGAA<br></u></font><font color="red">GGATGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAAAAAAAAAAAATTCACACAGCTGTACAAACAAATAAT<br>GACTGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA</u></font>atagctccagacatttacttcagacaccaagaaaatatcaagtaaaagaagaaaacaaaaatttcatctagta<br>gtgaaatacagtaaaatactttatctccagagtaaaactcttcttaatttgataattgaagggatctctagcctacctgctccatacctaagcaccctac<br>agtggtattgatttgttgacatgaccctgctctctaagagaaatcagtggttggccctctcatttaaaggagaagctcttgggaaaataggtaaacacaa<br>ccagagagaaaattctatgactcaactttgtacatgttgagaactaggagctaagatcaacacatatttgggggaagaaaaaccacaaaataaaagaaag<br>aagaaaatatatccatcaaatcc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr6	113024949	113030984	2000366	0	+	AF417137; RIP_L1_chr6_113_01	NA	NA	LINE	L1	L1HS-Ta	ttaagattagcttatctcttctgggctcttggagtcttaaattgaaaacactgctttgatatatgtgtgtcgctatgatttgcacactgttaaaatgaat<br>atcagatggttttatatttttgcaaaggcaatagctcaagcaggtaaactttatcttatgatctgaaaaccaagatgttgagacatggatatcaaagaat<br>attgcttaattactttaaatatcttaatattttaaagacttgaccttaacaaaaattaatttaaattatgttgtacgttataagatgtatatccagcaca<br>cacttattaagtatctggacacagacaggaaagtaagaaaggcctttcaccaaggaagttaaacaaagctacagatacgttccattt<font color="green"><u>TAAAGAGAAGCAG<br></u></font><font color="red">GAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGAG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGGCGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACATCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTACCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATA<br>ACTAAAATCAGACCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTG<br>ATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAAT<br>ACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGA<br>CTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAG<br>ATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAA<br>CTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCA<br>AAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGT<br>TCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAA<br>AATTCAACAACCCTTCATGCTAAAAACTCTCAAGAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAAT<br>ATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAG<br>TTCTGGCCAGGGCAATCGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAAATTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCTACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCTGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCTTGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTTGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTTGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAATAAA</font><font color="green"><u>TAAAGAGAAGCAG</u></font>atgactggtggaaaaggcaccacccaagagaaagatatacttggattgtat<br>gaactatgaaatgggctttgagacagcaggaacacctcaagagagaaacaataatccagtaaatactaaacattaagtgaaatgcctagaaaaactcttt<br>taagatattttcacaggaaattcaaacatgataaagcataaggaaatccacagaggttgctgataagtcttgatttgcaaacttattcatgtttctttca<br>gataaatgacatgatgacagtcagaagacacaagacactaaattgtccctcaatccactgttccaatagcatgtgtgctcctgcctcacttgactagtga<br>ataggagatgaaatcaattcagccagtgattacttt	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr11	48755847	48755848	2000367	0	+	AF417138; RIP_L1_chr11_048_01	NA	NA	LINE	L1	L1HS-Ta	aaggatattttttagcgccctgaagcctatggtggaaaaggcaatatcttcacataaaaactagacagaagcattcttagaaacttctttgggaggagcc<br>aagttggctgaatagtaacagctcaggtctacagctccaagcatgagcaaggcagaagacaggtgatttctgcatttccaactgaggaaccgggttcatc<br>tcactggggggtgccagaaagtaggtgcaggacagtgggtgcagcacactgtgcatgagccaatgcagggcaaggaatcacctcaaccaggaagcacaag<br>gggtcagggaattccctttcctagtcaaagaaaggggtgacagaaggcacctgaaaattgggtcactcccaccctaacactgcacttttccaacaggcat<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTANNTACCCTGCNCAATGGGCACATGTCCCCTAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>a<br>aaaaagagctcaccaggagattatatctcgtaccttgctcagagggtcctacacccacagaatctcactcattgctagcacagcagtcagagatcaaact<br>gcaaggcaacagcgaggctggggaagaggtgaccaccattgccaagttagttgattgattaggtaaacaaagcagccaggaagctcaaactgggtggagc<br>ccaccacagctcaaggaggcctgcctgcctctgtaggcgccacctctgagtgcagggcacagataaacaaaaagacaacagtaacctctgcagacttaaa<br>tgtccctgtctgacagctttgaagagagtagtggttgtcacagcatgcagtttgatatctgagaacgggcagacagcctcctcaagtgggtactcatcc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr5	135746722	135747161	2000368	0	+	AF417140; RIP_L1_chr5_135_01	NA	NA	LINE	L1	L1HS-Ta	ttttagtagagacggggtttcaccgttttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacag<br>gcgtgagccaccgcgcccggccgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctct<br>gatggccagtgatgatgagcatttcttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcacccactttttgatg<br>gggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccatt<br><font color="green"><u></u></font><font color="red">CACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATA<br>AAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATAT<br>TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGG<br>ATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGC<br>ACATGTACCCTAAAACTTAGAGTATAATTAAAAAAAAAAA</font><font color="green"><u></u></font>taaaaataaaaaaaaaaaaaaaagaaggaggggagactgactccatcatcaacatccaag<br>tgctctgttgggtttgccttccaatccaaactgtcccaagtttgaagctcctcctctccccagcactctattcctctcaaggttgacatttttatttgca<br>tgaagcctgatgatagcactccttttccctcaggaaaaaatccacactgcttagctaacatcctttggacctcacttctacctacttctgcacctcattt<br>ctggcactttctcctcagtctctatgctcttgccattgttgattttttaaaaaaatatttttttgcttctcaaaccctctgcttcttttacctctgggcc<br>ttggaatgtgctgtttcctgatctggaacttcttcttcct	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr3	154628872	154632632	2000369	0	+	AF417141; RIP_L1_chr3_156_01	NA	NA	LINE	L1	L1HS-Ta	agtgaagaaacaactcacagaatgagagaaaatatttgcaaactatacatctgacaagggattaataaccagaatatataagaagctcaaacaattcaat<br>aagaaaaaaattaataattcaattaaaaaatgcacaaaagatctgagcagacatttctcaaaagaagacatacaaatggcaaacagatatatgaaaagat<br>gcgcaacatcattgatcatcagagaaatgcaatcaaaagtacaatgacatattatcttactccagcttaagtggattttatcctaaagacaggcaataac<br>aaattttggtgagaatgtggagaaaagggaactcccaaacactgttggggcaaatgtaaattagtacacccactatggagtacagcatggaggttcctcc<br><font color="green"><u></u></font><font color="red">AAAGACTTAAAATAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTA<br>CCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCAT<br>TACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCA<br>GTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAA<br>GGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCA<br>CCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAAAAACTATCTCTCAGACC<br>ACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAGACTGCTCCTAAATGACTACTGGGTACA<br>TAATGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGA<br>GGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAA<br>CACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAG<br>GAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCAAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGAT<br>AAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGG<br>ATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAA<br>TAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTC<br>CAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATT<br>TTGGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCATATCAAAAAGCTTATCCACCATGATCA<br>AGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATT<br>ATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAA<br>TAAGAGCTATCTATGACAAATCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCT<br>CTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAA<br>TTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAG<br>GATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTC<br>AAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACA<br>AACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCA<br>TCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATAGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCA<br>AAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATA<br>GATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGTATT<br>CCCTATTTAATCAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATG<br>GATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCC<br>AAAACACCATGTCTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACC<br>ACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTAC<br>ACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCC<br>ATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGG<br>AACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATAT<br>CCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTTAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAA<br>TTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATAC<br>TTAATGCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTA<br>GAGTATAATAAAAAAAAAACATATCCCAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAGAA</font><font color="green"><u></u></font>ctaccatatgatccatcaatcccactgctaggtatatac<br>ccaaaagaaaggaaatcaatataaagaagagatgtctgcacttccatgttcattatcaaactactcacaatagccaatatttggaaataacaaaggacaa<br>atgttacttctcacttatttgtgggagctagaaaaattaaaacaattgaactcatgcagctagagagttttatgatggttaccagagactgggaagggta<br>gtggagtcggggtggggtggagagtgaagatggttaatgggaacaaaaatgtggttagatggaatgaataagatctagtatttgatagcacgatagggtg<br>actacagtcaacaataatttattatatattttgaaataactaaatgagtataattggatag	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr5	154802077	154802078	2000370	0	-	AF417144; RIP_L1_chr5_154_01	NA	NA	LINE	L1	L1HS-Ta	taaaagaccaaaagaacacaaaccatcaagaagaactgataaattgacaacactgtaatttagaggtttggcacaacaaaggacaccataaacaaaatga<br>acaatgagctccaggtaaggggaagacattaggattggacaactgaaaagtgattcatctctaagagctcctataattcaacaagaaaaaagattacctg<br>aaaacaaaccaaaaacatgggcaaagaatatgaggcagcaattcatagaccaagacacccaaatggataatagatgaatgaaaagtttcttgaccacact<br>ggtagaaagttataaattaaaacagcaatgagatagcatcaaattgacaaaaatgttaaagtctgacaatactgagtcctggtcatgatgtaaagaacta<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAATCTTAGAGTATAATTAAAAAAAAAAACACATAAAAAAA<br>AAAAAAAAACAACAAAACAAAGCAAACATGGAAATGTTTGTTATTTTAATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAGATTT<br>GTGTACGTTAAATATGTGAAACTTATTGTATGCTGGTTACACCTCAATAAAGCTGTTAAATTNNAAAAAAAAANNAAAANNAAAAAAAANNGGACTC</font><font color="green"><u>nnn<br>nn</u></font>ccatacactgctgataagggtttaagttggtacaatcactttggacaaccactgacaataactagtaaagttgaaaatgtgtatactgtaaaatccag<br>caaagcattctcctagatcagttgttctcaacaggagggaagtggggtcagggaggagttgtggttctttactcaggagtcatttagcaaagcctgaaga<br>ccattttggttgtcacagctgaggtgaggggcaaggacacgactggtatctagtggatagaggctagagatctgtcctacaatgcacaggtcacctctac<br>cccccaaagaattatctggctcaaaatatcaataatgctgagctgggaaaccatctatcgtgagctgaatggcatccttcaaaagttacgtccacctgga<br>ac	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr1	71248594	71248595	2000371	0	+	AF417146; RIP_L1_chr1_070_01	NA	NA	LINE	L1	L1HS-Ta	tgacctaatccccagtgtgatggtatttgaagttgaggcttttggaaggtgattaggtcatgaaagtgaagccctcataaatggcattagcacctttata<br>aaagagatgacagatgtgcccttgtcccttccaccatgtgaggatgcagcaagaagacactgtctatgaaccagggtacaggttctcagcagacactgaa<br>tctgctggcaccttggtcttgaacttcctagcctccagaaatgtgaaaataaattgctgttgcttataaaccacccaatctatggtactctgttatagca<br>gctcaaaggactaagacagttaagtaaatttaaataatgtataaaatatttataaagaataaagagaaaataagctccaaatgcccatcacccatcttaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTGAGAGTATAATAAAAAAAAAAAAAANGAAAAAAAA<br>AAAAAAAAAAAAAAAAAAG</font><font color="green"><u>nnnnn</u></font>gaaaataaatacttttattacctttcaaacctctgtacactttagtatatccttccccctccaaagaaagtactat<br>tctcaactttgagtttatcattttcttttcttttttttttttttttttgtgatggagtctcagtctgtcacccaggctggagtgcagtggcacaatcgca<br>gctcactgcagcctccccctcccaggttcaaatgattcacctgccccagtcccctgagtagctgggattacaggcacccaccaccatgcccagctaattt<br>tgtattttttagtagggacagggtttcaccatgttggccaggctggtcttgaactcccaacttcaggtgatctgcccacctcgacctcccagagcactgg<br>gattacgggcgtgagtcactgccc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chrX	81746652	81748146	2000372	0	-	AF417147; RIP_L1_chrX_081_01	NA	NA	LINE	L1	L1HS-Ta	tttgtatataccctttgtcatgttgaggaagtccacttgttttaatagatttctgagtgtttttatcatgaaagaatgtcagatttttcaagtgattttt<br>ttttgtgtcaattgagagaatcatggtttgtttcccctttcattccatgaatgtgctgttacattgatggattttcttatgttgaaataatcttacattt<br>ctggaatatatgccacttgtccgtagtgtataattattttaatatgatgttgaattcagtttgatagtattttattgaggacttttgcatttatacttat<br>aaggaatattggtgtattatattcatgtcttgtgaaactttgtctgactttagtatcagggtaatgctcttttcataaaaccaatt<font color="green"><u>AAGAAGTATCTCTC<br></u></font><font color="red">TTGCTGTGCAGAAGCTCTTGAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCAC<br>GCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTA<br>TAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGT<br>TTTTCTCAGCTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTCCCATTGATCTATATCTCTGTTTTGGTACCA<br>GTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCG<br>ATGCGGGTTCTTTTTTGGTTCCATATGAACTTTAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAA<br>TATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGA<br>AGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCA<br>GTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAG<br>TTCAACCATTGTGGAAGACAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGA<br>CTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAGAGACTTGGAACCAACCCAAATGTCCAACAATG<br>ATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAAT<br>TGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACA<br>CAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTG<br>GGTGCAGCGCACCAGCATGGCACATGTATACATATGTAAGTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAGAA<br>GTATCTCTC</u></font>ctcttctaatttttagaagattttgagaaatattggtgataatttattaaatgtgtgatgtaatttaccagtgaggccatctggtcctgga<br>ttttctttgttgggagtttttttaatgctaattatctatttatttattgtacatgaataagttttttagtggtgatttgtgaaattttgtgcacccatca<br>cccaagcagtgtacactgtacccaatgtatagtcttttatccctcaccaccttctccccctttcccctgagtcccaaaagtccactgtattattcttatg<br>cctttgcatcctcgtagcttagctcccacttatgattgagaacatacaatgtttagttttgcattcctgaattatttcactcagaataacggtct	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr2	73354395	73354854	2000373	0	-	AF417148; RIP_L1_chr2_073_01	NA	NA	LINE	L1	L1HS-Ta	cctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcgcccgccttgatcatgtcttatataacaatgat<br>tttgtaatattttgtaaagttagaataaaaagtaatttagtctttttttttaatacagataaaaccaaaagatagtgtttagggcttgcacttgggagat<br>gtgttagacagcgacatgcacagcccaggtccccgcaagggcagatatatcctcttagtttcctcttgttcgtgatggtttcttggtctttccttgtgtc<br>tcatgatcttgacacttttgaagggtactgattgggtatcttgaaggatgtccttcaatttggatttgtctgatgtttttctcttgatt<font color="green"><u>AGAAAACAGCT<br></u></font><font color="red">TGGAACCACCCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGTTGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATATAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAATAAAAAAAAAAACACACACACAAAAAAAAACAAACAAACAAAAAAA</font><font color="green"><u>AGAAAACAGCT</u></font>atgggtttttggtaaggcacagaggtgat<br>gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgagacagtctcactgtgtcgcccaggctggagtgcagtgtcgcgatcttgact<br>ccctgcaacctccgcctcttgggttcaagcgattctcctatctcagcctcctgagtagctgggattaaaggcgcccaccaccatggccaactaatttttt<br>tgtatttttagtagagatggggttttgccatgttggccaggctggtgttgatctcaagtgatccacccgcctaggactcccaagtgttgggattacaggc<br>gtgagccactgcgcctgacatacctttctcatggctgcatatcaggggtacattctgtcc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr15	24383040	24383928	2000374	0	+	AF417149; RIP_L1_chr15_021_01	NA	NA	LINE	L1	L1HS-Ta	ataaaattacctgaataattgaaagaattccatcgtaacatgatttcacctatatgttagacccatggattctataaacccacttagagcgttgtaccaa<br>tgtttaaattacatgctttacagaatccaattcaaatgtatttttatatgtcatcagaactgccatggaaagtggtaactatacatgcattgtggtttta<br>ggtaaattttcttttaaaaagaggaattgtatatgtcttcataggaagtgatccagggaaagcttgatttgttttagtaattcttttcttaatactttta<br>cactctttatcctactctcatttcttcacattcacaagaaagaggctttgtttacctttctgctcacttttgggtgatcatgatgtgtcaatg<font color="green"><u>AACTCAA<br></u></font><font color="red">GACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACA<br>CATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAG<br>TCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGT<br>GGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGA<br>CACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGG<br>CACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAAC<br>TATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTG<br>GGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACA<br>TGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACTCAA</u></font>aaagcacacag<br>cctgattttttaaatgtgccaaaggccttaactgatgcctctccaaagaagatattcagatagcaaataagcatacaaaaagatgctctaccttgtatgt<br>catttgggaaatgcaagttaaaacaacaatgtgataccactgttacacaattgatgaacctacattgacacatcatgatcacccaaaagagaaaaaatat<br>ttttaagatgcaaaggaaactggagatttttttaaggaaaatcaatgaaggaagaaacctttattggcttctccttttggtgacaaatgtattgttctct<br>tataagtagaaaactatactttaattatttcgtaatgtagtgattttaccagccacaactaacaggataacataggaaaggc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr3	40081689	40082484	2000375	0	+	AF417150; RIP_L1_chr3_040_01	NA	NA	LINE	L1	L1HS-Ta	ttaaaacaataagaatgtattgtctccctcttctgtaggtcagaagtctacaatcaaggcgctggaagggccacactccctcccaagtctcttgggggag<br>aatctgcccatgcctccttcctagcttttggtggctgctggcaaaccttggtgttacttggattgtagccacagcactccaatctctgcctttgtcttca<br>cattgccttctctgtgtgtctcttaaaggacagttgtcattggatttagagctcactcatataatgcaggataactacatctcaaaattcttaatttata<br>agaccccttttccaaataaggtaatagttacagattccagtgatttagggcatggacatatcatttaagagagccaaccttcttttgagaagtgtctgtt<br><font color="green"><u></u></font><font color="red">CATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTT<br>AGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTC<br>AACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTA<br>TAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATA<br>GACTGGATTAAGAAAATGTGGCACATATACAACATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGG<br>AAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAAGTGAACAATGAGATCACATGGACACAG<br>GAAGGGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGG<br>GTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u></u></font>gaaa<br>aaaaaaaagaaaatattaccagcagaaaaaaaaaaaaaaaaaaaatcaaagcaatggcttgcaactctgagtaaaacaggaatccctgcatccatattga<br>taaacaagtgaataaataaatggtgagaaaggatgtttttctttgtatgtagaatgtcaaccaataaatgtagaaggcattatggagttaggaaatcatg<br>ttggtcaatcatgacagtaataactgggacaagactaatcaactgatactatataactggtgaatgaggaacaaaatactcatatagtctcaaagtatct<br>ccccacaaattacttgtaaattacaaagaggaaatcgtaaatttaaaatgaaatctggcagacaccaacctaagcggtgaacagagttaacaacat	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intron:MYRIP:NM:015460:2/17	
0	chr12	61766962	61767253	2000376	0	-	AF417151; RIP_L1_chr12_060_03	NA	NA	LINE	L1	L1HS-Ta	gcagacttaacgtcccaaatcagcaaattttgagttaaccaaaaaggagattatgctgagtggtcttacttaatcagatgaaccatctaaaagaggatca<br>agaattcagacactctcctgctgtctttgaagaactaagcctccccgagttctgcagtggcaaagaaataaattctgccggcaaccatgtagctttgaag<br>agaaccctgagcctcagatgagaccctagtccctactaacaccttgatctcagtgttgggagaacacaaggagagatctcattcaagctgtgcctggaga<br>ataagaaagtcctgaataattatgtccagagtgatgcattttatttggcccatatatgaattacttaatacttaaaatatattttatt<font color="green"><u>TTATAGAAAATA<br></u></font><font color="red">ATTGCCAACTAATATTTTTTCTGCATCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGT<br>GGTGGGGTGGGGGGAGGGGGGAGGGATAGCACTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACA<br>TATGTAACTAACTTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAATAATAATAATTAATAGAAATCCTTTAGAAA</font><font color="green"><u>TTATAGAA<br>AATA</u></font>tattactgtgaggatctagttggtattttcttttttcttttcttttttttttttttgagacagagtttcactctatcacccaggctggagtgcagt<br>ggtgtgatctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaggtagcggggattacagattcatgctgccaca<br>cccagctaattttttgtattttagtagagatggggtttcactgtgttgcctaggctggtctcaaactcctgagctcaggcaatctgcccagctcggcctc<br>ccaaagtgctgagattgcaggcgtgagccaccgtacccggccaagttggtattttctatcatgatctggaaagctgacatgcattaaatgac	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr4	120869847	120875914	2000377	0	-	AF417152; RIP_L1_chr4_121_01	NA	NA	LINE	L1	L1HS-Ta	ccctctcagctcagttcaatcctgacattattcagaatgaaagactcaaactcaaaactcctgtgtgtttgacacaacagctaactgcattacctgaccc<br>tggagtggattctgtgctggaaaagaaacattattggggtcaaccaacaaaattggaacatgaatgggagattaaaacatgctaccaatgttaaatctac<br>tgaagttgataactgaatggtggttataaagagaataaccttattcttaggaaatgcataaatatttaataagaggctatggtgtatataactgtccttc<br>aaaaacaggtgtacacatacatatatatggagaaaaaaaaagagagacagagaaaaaaataaatgaaaaagcagtgtggtaaactgtt<font color="green"><u>AACAAATAAGTC<br></u></font><font color="red">GGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGCAAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGCTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCTGAAGCAGGGCGAGGCATTGCCTCACTT<br>GGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTTCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACCGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCAATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAACCAGAGAGAAAGGTCGGGTTACACTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAACGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAACGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTCGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAGGATCCATAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATCTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACTGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAGTAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTGAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGACATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AAGACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTATCGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAATAAAAAAAAAAACCAAAACAAAACAAACAAACAAACAAAA</font><font color="green"><u>AACAAATAAGTC</u></font>aatctgggtaaatggcatat<br>gggtattcttagtgttattttgtacttttctgtatgcttacaattatttccaaataattaaaagcctttaaattgaaaatgagcaaacatttttaaaaag<br>tggaaataaccaaaattactctgtatgtaactagtgatgattgggaaaaaagtttaatttcagtaagaaatgtctgcttgtgaaaatcactttattacaa<br>caaaccattagagtttattgactttttttttttttttttttgagacagagttgcactctgtcacctaggctggagtgcagtggcatgatcacagttcact<br>gcaacctctgcctttcaggttcaagcaatcctcctgtctcagcctcctgaatagctgggactataggc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr1	149308421	149308422	2000378	0	+	AF417154; RIP_L1_chr1_146_01	NA	NA	LINE	L1	L1HS-Ta	gaaattaaaccaggctgtgaataatgagtgatagtgaatgttctcctttaaccagttttggcaaagaggaacatggaagagcttgggaaggtatcaggat<br>ctgaagtgggggaacaggagagaagggaacaatctccaaggaaggaaaaagatgcacagagagaggaggctgagaataggcttcacccactgggagattt<br>tgcgtagggtcaggcttttctctgagaatttaaaatgtcttattgttacactacctgggacacagaaatggagctgcttcaagccattcctctaaatagc<br>tgcactcctagctgccgggtgccaggatgtttggttccaaatccaaaagcaatatttatgggggcaggattggcacgtggttgtatgcacagtgtgtgtg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaa<br>gatgtgtgtgaaagagtggaaagagtgtgtagggctgggtgactctgtagaaatagtttcccatccgacagtagctcctgacctaaggaagaccttcccc<br>atggaaatctgagcttagcattccaggacagtcttaatctaggcctaagaaggttgtagcacagagagaaggcaacatttaagtgtgaggtaacttatcc<br>tccttgtagagcacctcagaatgtccctgacttctcctactctcctgcccagagtgagttcctaggtagggtggctaggagaaggcactttcaaagaaca<br>agcactgagctggttctcactgtctggctgatctacatattgtcctgtcattttttatgaaccaggttctaacagaggaaccaaaaaatcctctggc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr9	102615607	102617479	2000379	0	-	AF417155; RIP_L1_chr9_099_01	NA	NA	LINE	L1	L1HS-Ta	atggtacttttcagtctgaccgtctttgatttggtagagtatgtgtctgtctctctctccagtgagaccacagactctttgagggtaagggaatgtgtgt<br>ctggtgcacagttgatgctcaataaatatttactgaattaatctgaatcaaaataaggcaattttcaagaattcatacttttatcataacagtggtaggc<br>taaaaattattaattcagatttttctaatttgggagactttctgatactcacaattggcccattcattcaatgaatatttgtcatatgccagatacttgt<br>aaatgctaaagtaattttaaagataaataagactctccctgtccttaagaaccccacagtctagctggtaaagaaagacac<font color="green"><u>AAAGAAATTCCCTAACACA<br></u></font><font color="red">GCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATT<br>CACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAACTA<br>AAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCA<br>ATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATGTGGAACCAAAAAAGAGCCCGCATTGCCAAGTC<br>AATCCTAAGACAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAA<br>AACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAAT<br>GGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAAT<br>CAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAG<br>GACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTA<br>CCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACA<br>AATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATG<br>AAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAG<br>GAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCG<br>ATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACA<br>TGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACA<br>TATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATC<br>GCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGA<br>CTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTA<br>TACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATTCCCTAACACA</u></font>atgtgtat<br>attcagttgcagggatgcatgaacacttttatggattcttagcaagacagctggctcttcatggaagtgtgtaaaacaaataataacagtgaaggtttgt<br>ctaattttttttctgcatagtacatattagttcattcaatttttataagaaacctgaaagtagacatctttaaccctgtgagaaggaaggaaattgagat<br>tcagagagggtaaggaacttgtccaagattgcaaagacagcacatttcagggtgaagacctgaactcagatctccggtctctaaatcctgtggcctctcc<br>cctctcccaccatttttgtttttaactattttgccccgctaagtttgatatttagttttccttgcaatgtagc	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intron:NR4A3:NM:173198:7/8	
0	chr11	37811181	37811182	2000380	0	+	AF417156; RIP_L1_chr11_037_02	NA	NA	LINE	L1	L1HS-Ta	atcatttgtttttttcttgttgatttgtttgagcttattgtaaattctggatattagtcctttgtcagatgtacagattgtgaagattttctcccactct<br>gtgggttgtctgtttaatctgtggactgttccttttgccatgcaaaagctcttcagtttaattaagtcccagaaatctatctttgtttttattgcattta<br>cttttgggtacttggtcatgaaatctttgcctaagccaatgtctagaaggatttttccaatgttatcttctaaaatttttatagtttcacgttttaaagt<br>ccttagaccatcttgagctgatttttatataaagtgagagatgaggatccatttttattcttctgcatgtgtctagccaattatcccagcaccatttgtt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>nnnnn</u></font>ga<br>aaagggtgttctttcctcacttcatgtttttgtttggttttttgaagatctgttggctgtaagtatttgggtttatttctgggttctctattctgttcca<br>ttggtctatgtgcctatttttatgctagtaccatgctgttttggtgactatagacttacagtatagttagaaatgagtaatgtgatgctgccagatttgt<br>tctttttgctcagtcttactttggttaggcaggctctttattggttccatatgaattttagaattgttttttctaattctgtgaagaatgatggtggtat<br>tttgatggttatcacattgaatttgtaggttgcttttggcagtatgatcattttcacaatgttgattctacccacccatgagcatggggtgtgttttc	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr3	154628886	154632631	2000381	0	+	AF417157; RIP_L1_chr3_156_02	NA	NA	LINE	L1	L1HS-Ta	tcacagaatgagagaaaatatttgcaaactatacatctgacaagggattaataaccagaatatataagaagctcaaacaattcaataagaaaaaaattaa<br>taattcaattaaaaaatgcacaaaagatctgagcagacatttctcaaaagaagacatacaaatggcaaacagatatatgaaaagatgcgcaacatcattg<br>atcatcagagaaatgcaatcaaaagtacaatgacatattatcttactccagcttaagtggattttatcctaaagacaggcaataacaaattttggtgaga<br>atgtggagaaaagggaactcccaaacactgttggggcaaatgtaaattagtacacccactatggagtacagcatggaggttcctccaaagacttaaaata<br><font color="green"><u></u></font><font color="red">GACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAA<br>AACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAA<br>GGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGA<br>GACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAAT<br>TGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTA<br>TTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAAAAACTATCTCTCAGACCACAGTGCAATCAAA<br>CTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAGACTGCTCCTAAATGACTACTGGGTACATAATGAAATGAAGG<br>CAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGC<br>ACTAAATGCCTACAAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCT<br>AGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTG<br>AAAGGATCAACAAAATTGATAGACCGCAAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCAC<br>CACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGAC<br>ACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCA<br>AAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAA<br>AGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTGGACCAATATCC<br>TTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCATATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCC<br>CTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGC<br>AGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTAT<br>GACAAATCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTAT<br>TCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGC<br>AGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAAT<br>GTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAAT<br>ACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAA<br>CATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATG<br>ACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATAGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTG<br>GAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAG<br>AACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGTATTCCCTATTTAATCAA<br>TGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAA<br>ACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCATGTCT<br>TCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCA<br>TCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGAC<br>TGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATAT<br>ACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATG<br>TCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACA<br>TGGATGAAATTGGAAACCATCATTCTTAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAT<br>CACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACTTAATGCTAGATGA<br>CACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAA<br>AAAAACATATCCCAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAGA</font><font color="green"><u></u></font>actaccatatgatccatcaatcccactgctaggtatatacccaaaagaaaggaa<br>atcaatataaagaagagatgtctgcacttccatgttcattatcaaactactcacaatagccaatatttggaaataacaaaggacaaatgttacttctcac<br>ttatttgtgggagctagaaaaattaaaacaattgaactcatgcagctagagagttttatgatggttaccagagactgggaagggtagtggagtcggggtg<br>gggtggagagtgaagatggttaatgggaacaaaaatgtggttagatggaatgaataagatctagtatttgatagcacgatagggtgactacagtcaacaa<br>taatttattatatattttgaaataactaaatgagtataattggata	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chrX	150588601	150588602	2000382	0	+	AF417159; RIP_L1_chrX_150_01	NA	NA	LINE	L1	L1HS-Ta	cccattttgtttttgtcttctttaatattgaatgcaaacttcacgttatttcacattttaaaatctttcatttcttctactattttcatacctaaaaacc<br>agacagtaatttgcactgttcacttattttttaaacaattgcatgcagctgtttcgattcatctttaaaagcttatttccacagcacataacaaagttaa<br>ttaaattgctttttgaagcaaggctgctttgtttccctctgcaagatgactcatgaggtctgactgagtctcatttatattcctccccagcaggtaattt<br>aaatgtgatttatacagaaaggaaaagaaagagaacaaaaaaagaaaaaagaaaacaaatgaagaaaattaccccttgctcacgtctttaacaagttatt<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAGAAAAAAAGAAA<br>AATTAGGTTGACCATAGTGGCTCATGCCTGTAATCCCAGCACCTTGGGAGGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAAAGACCAG<br>CCTGGCCAACATGGCGAAACCCTATCTCTACCAAAAGTACAAAAATTAG</font><font color="green"><u>nnnnn</u></font>ctgggtgtggagttagatgggagaaagctgccatatttctttcggt<br>gcccaaacattcttgtttacagcagcattgaaaactggcatctttgtgccccgagttgtataaatggtgcagggaaggcggattttggctcaatctgaag<br>aaacactgattctctgagatgcccggtggtggtaccagctggcttgggtggcattgagctccctaatgcatgggtgtgattctctgacagagaaggttgc<br>ttggtggtgttgggatggggaggataccctaaaggactctttatttatttagcaatgcatgggtcctggcatattgaaggaataggaaggagcccagcca<br>gcctgaatggtgggagactaggggagggtaaagttgggtagtaaggtgtggcag	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr9	94058480	94058481	2000383	0	-	AF417160; RIP_L1_chr9_091_01	NA	NA	LINE	L1	L1HS-Ta	ccatgaaaacagacatgaaaagaggaaccctgtccacctgtcagaatagtaaaactatttgtcagaaggtaactaaagacttggtcttgaaaagttgcca<br>tatctgatatgacctattaagctctttggtctgggggactatattcaggcaactgaagaatttgggcttgtcagatactgacaagtctgctgatcctgaa<br>taattaatagatctatgcctccaaatatgtcttggcaatattgggtctaataatggagttacagtcctggtcttgtgaatcaaaaattaattcactgcca<br>agcagtttttaacagaaaatgttgtgggactctcctaatacatgtcatttagagtgcttacttatttccataacaatgccttttaagtgattttttttaa<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATAAATAAAAAATA<br>AAACCCCCTAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>nnnnn</u></font>gaatttgtgatatcaatttaattagtaaacaatattttagtatatctcataactttttcaa<br>gttgtcatatttgaatgtgatgatatggatgatacttaattttctttctttcgttttagcttcctctgcaaaaatgggcctggttgaaacaaaattggcg<br>attattcctggtggaggtatgagtagttcacgcccattcctcaaatccttgatttggtcctagaaacagggcataaggcaaaatcatgttaattggaaag<br>gcaacattttgcgtaaagagacaatggcatattgtttgcatccctagcaaagtccccattcaagttacaggcatacctaacagattttccccaccgcaat<br>gaaacaaatactgcgatagagcaagccacacaaattttt	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:AUH:NM:001698:5/10	
0	chr3	154628877	154632626	2000384	0	+	AF417161; RIP_L1_chr3_156_03	NA	NA	LINE	L1	L1HS-Ta	agaaacaactcacagaatgagagaaaatatttgcaaactatacatctgacaagggattaataaccagaatatataagaagctcaaacaattcaataagaa<br>aaaaattaataattcaattaaaaaatgcacaaaagatctgagcagacatttctcaaaagaagacatacaaatggcaaacagatatatgaaaagatgcgca<br>acatcattgatcatcagagaaatgcaatcaaaagtacaatgacatattatcttactccagcttaagtggattttatcctaaagacaggcaataacaaatt<br>ttggtgagaatgtggagaaaagggaactcccaaacactgttggggcaaatgtaaattagtacacccactatggagtacagcatggaggttcctcc<font color="green"><u>AAAGA<br></u></font><font color="red">CTTAAAATAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAG<br>CCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACAT<br>AATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAC<br>CTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATA<br>CCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACA<br>CCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAAAAACTATCTCTCAGACCACAGT<br>GCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAGACTGCTCCTAAATGACTACTGGGTACATAATG<br>AAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAA<br>ATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACAT<br>TCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCT<br>GGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCAAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGG<br>GGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACA<br>TTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTT<br>TACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATC<br>AATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTGGA<br>CCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCATATCAAAAAGCTTATCCACCATGATCAAGTGG<br>GCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTC<br>AATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGA<br>GCTATCTATGACAAATCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCAC<br>CGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTC<br>CCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATAC<br>AAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGA<br>GAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAA<br>ATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAG<br>CTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATAGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGA<br>ACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCA<br>ATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGTATTCCCTA<br>TTTAATCAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTA<br>AAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAAC<br>ACCATGTCTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTAT<br>GAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGT<br>TGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTAC<br>TGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCA<br>ACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTT<br>GTAGGGACATGGATGAAATTGGAAACCATCATTCTTAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAA<br>CAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACTTAAT<br>GCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTA<br>TAATAAAAAAAAAACATATCCCAAATTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGA</u></font>actaccatatgatccatcaatcccactgctaggtatatacccaaa<br>agaaaggaaatcaatataaagaagagatgtctgcacttccatgttcattatcaaactactcacaatagccaatatttggaaataacaaaggacaaatgtt<br>acttctcacttatttgtgggagctagaaaaattaaaacaattgaactcatgcagctagagagttttatgatggttaccagagactgggaagggtagtgga<br>gtcggggtggggtggagagtgaagatggttaatgggaacaaaaatgtggttagatggaatgaataagatctagtatttgatagcacgatagggtgactac<br>agtcaacaataatttattatatattttgaaataactaaatgagtataatt	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chrX	137145227	137146487	2000385	0	+	AF417163; RIP_L1_chrX_136_01	NA	NA	LINE	L1	L1HS-Ta	tctctgtttgtctgttgttggtgtataagaatgcttgtgatttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggag<br>attttgggctgagacgatggggttttctagataaacaatcatgtcgtctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatt<br>tccttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagcggtgagagagggcatccctgtcttgtgccagttttcaaaggga<br>atgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgaaatatgtcccatcaatacctaatttatt<br><font color="green"><u></u></font><font color="red">GATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAA<br>GATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCAT<br>GTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGA<br>GTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACA<br>AGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATG<br>CTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAAC<br>AGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCA<br>GGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACG<br>TATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGACACATATACACC<br>ATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAAC<br>AAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTG<br>GGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATG<br>TAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u></u></font>aaaaaaaaaaaccagaccttctgacttctcatcttgggt<br>tttctttgtgttgtctgtatatagcacatggatgaaaaccaagcccttggctagctagtgtccactgcttccttttagcatcctccagtgaggtgggtgg<br>aagtggtgttgattatacttccagaagaatattgggactgaagtttcttaacaagggtctactttatcagtctccctcctttctaggcttccagctccta<br>ctgaagggcatctcacacccttcacccacactgaatttctcctccttggcgggatgtagttcagttctttctctttgatcgccttgtcatctaaatagca<br>ctgctgccatcacctttgccctggttcccttctcttctatgcatgtgaaggaaaagttaga	UCSC	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	NA	NA	NA	NA	NA	intergenic	
0	chr6	65477021	65477022	2000386	0	-	AF417164; RIP_L1_chr6_065_01	NA	NA	LINE	L1	L1HS-Ta	gttctcattcatatatgaatgcaaaataaaaatcataaaggtaaaaaatagaaaaagaaaaatagaacaaagaatactagaggctggaaagagtatgggg<br>aaagggaagatggggagagatttggtaaaggatacaaaattacagctagaaaagaggaataagttttagcattctgtagcactgcagggtgactataatt<br>agcagtaatatcttatatactttcaactagctagaggaggatttaaaatattccaatacaaagacataataaatgtacggtatgatgaatatgctaatta<br>ccctgatgtgatcactatatattacatacatcaaaacatcactagtacacaataaatatgtacaattagtacatccaattaaaaattaaattcacttatg<br><font color="green"><u>nnnnn</u></font><font color="red">NNNNNNNNNNTGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>nnnnn</u></font>aaaactaatgtaaaaaggaaaaaatacaattttacctttatttgattgtagagcaaaaaaatatatagctcatgtgaatataaagt<br>gaggttaaccccagtgatatcatcacatataaaatttcaaactgtttgatttgacttcagaactttcaatgatctgtagacttaaaataattgacttctt<br>ttcagtttttcttttactgtactgaacctatgctttttcactataaacaaattattcttttgctctccttagcatcctttaaggtaagaagtaacaaatt<br>attgtcacaaaataataaaatactcaaattctgttcaaatgattaagtacatattagacttagaaaataatgaatacatttcactctaagtttgtctgtg<br>aaatcatctcgtat	Other	<UL><LI>Ovchinnikov I, Troxel AB, Swergold GD. Genomic characterization of recent human LINE-1 insertions: evidence supportingrandom insertion. Genome Res. 2001 Dec;11(12):2050-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11731495">PMID:11731495</a>.</LI></UL>	E:Retrotransposon display:L1 display	 TSD unavailable	NA	NA	NA	NA	intron:EYS:NM:001142800:22/43	
0	chr6	19765126	19771184	2000387	0	+	AL022726; RIP_L1_chr6_019_01;AC206603	AAAGTGCTGGGAGGTTTACT;NA	TCCTTCCATTAATCATGATT;NA	LINE	L1	Ta-0	ctcactgacaatgcacctggttacccaagagctctgagggagatgcacaggagatgaacattgtttccatgcctgctaatacagcattcatcctgtagcc<br>catgtatcaaggcgtcatttcgactttcaaatcttattatgtaagaaatacatcttgtaaagccatagacagtgattcccctgatggatctaggcaaact<br>acatggaaaaccttctggaaagggatcaccattctagatgccattaagaacaaccatggccgggcacagtggctcacccctgtaatcccagcactttggg<br>aggctgtggtggaggataacttgagcccaggagttgagactaaaaccagcctgagcaacatggcaaaaccctgtctccagg<font color="green"><u>AGAAAAAAAAACTAACTGG<br></u></font><font color="red">AGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTT<br>CATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGC<br>AAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGG<br>CTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCA<br>AACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCC<br>ACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTG<br>TCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCT<br>GACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTC<br>TGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGAT<br>GGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCACCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAAAGCTGG<br>ATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAA<br>ACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACG<br>TGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTT<br>AGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATAGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATG<br>TGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACA<br>GAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCC<br>AGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATAT<br>TCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCA<br>AATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACTGGTACCAGCCGCTGCAAAAT<br>CATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACA<br>TAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTAT<br>TCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTT<br>GCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGG<br>AGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATT<br>AATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAA<br>GCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAG<br>TTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAA<br>TCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTT<br>GAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAA<br>AGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAAC<br>TAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGAT<br>AGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATAC<br>AAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTCCCAAGACT<br>AAACCAGGAAGAAGCTGAATCTCTGACTAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGAT<br>GGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACT<br>CATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAA<br>AATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTC<br>AATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAA<br>TTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATAT<br>CATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTT<br>CTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATC<br>TAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATT<br>CTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCAACTTACA<br>AGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAG<br>GAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGA<br>AAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAACCAAAAGAACAAAGCTGGAGGCATCACACTACCTGAC<br>TTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAA<br>TGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCT<br>AGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATA<br>AAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAACCAAAA<br>TTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGC<br>AACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAG<br>GACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAA<br>CCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTT<br>ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTT<br>GGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>GAGAGTATAATAAAAAAAAAAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAAAAAACTAACTGG</u></font>gtatggtggcatgtgcctgtag<br>tcccagtgacttggaaggctgaggtgggaggatcgactgagcccgggatttcaaggctggctgcagtgagccataatcatgcaactgcattccaacctgg<br>gcaacagagtgagaccctgtctctaaaaaaaaaaaaaaaaaaaaaaaaaaaagaatcatgattaatggaaggaagtcaaatatcaccattaacaggagtt<br>tggaagaagttgattccaaacctaatgggtgactttgaggggttctaggcttcaggggaggaaagaatcacagatgtggtaaaaataacaagagaactag<br>agttagaagtggagtctgggctgggcgcggtagctcacgcctgtaatcccagcactttg	UCSC;UCSC	<UL><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr4	108276700	108277777	2000388	0	+	AC003100; RIP_L1_chr4_108_02	TTTAGTAGATTTGCAGGTCT	CTCTCTGAGTTCCAATTATT	LINE	L1	Ta-1	attttttgtttggttatttacatttcgggtttggtattgttttgtttttgctgctgaggatcaattatgctctttcaatatcagggttcatgtatttctt<br>taattctgaaaactccccaactattatctcttagaatactttttctcccttttatcctttattttctcttctggaatatctcattctatctctttatctt<br>ctttatcttttaacattttttataattttttaatcattttatctctctctgctagattctgagaggtttactcaactccatctttcagttctctgattct<br>cattttaattgacattaatatgctattcatcccatccaattaacttatttttgtgattatatttttatatctagaagttcaatttggttctattt<font color="green"><u>TCAAA<br></u></font><font color="red">ACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTG<br>CACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATC<br>TACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATG<br>CAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGC<br>AATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTG<br>TGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCAT<br>GCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGAT<br>TAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATC<br>ATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGA<br>ATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCA<br>CCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA</font><font color="green"><u>TAAAA</u></font>taaaaaataaaaaataaataaa<br>aaaaataaataaaaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtggaactgtaaactagttcaa<br>ccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattata<br>aatcatgctgctatgaagacacatgcacatgtatgtttactgtggcactattcacaatagcaaagacttggaaccgacccaaatgtccaacaatgagaga<br>ctggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcc	UCSC	<UL><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chrX	146735253	146741323	2000389	0	+	AC007538; RIP_L1_chrX_146_02	TGTAAACCTAGCAAGAAGCT	AAGTTATAGCACATATTCCC	LINE	L1	Ta-1	gatccttgtaaaatagaatacatgctcaacaaaatgctaaacctgtgcaaggaactacaatgaatatcgaacaaaccatgcttcttttacaaaatagttt<br>tctcacaaaatgtcaatgtaaacctagcaagaagctattgtgtaatatgtttctatgtatactcacatggagtattttcaattaatatgacttactctta<br>atttactacctcttgtaccaagttggcatacaatatatttttccaagataaattaccagtgagtggaaccaattgtcacatatgagtcccggagctgagg<br>aaaagtagaatttaacaaggccactgtagaaaagattgctgcataactgttcaaaatcatttaagtataaaaagactttatgcttat<font color="green"><u>GAAAAAAATTGTC<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGAGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGACAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAAGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGTGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTATAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAAGTGAAGGAAATAGAAACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCCCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAA<br>ATTTTCGCATCCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGAAGGGATAGTATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAAGAGTATAATAAAAAAAATAAAATAAAATAAAATAAAAATAAATGAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAAAATCGTC</u></font>agcagtagattgcttg<br>attgctttaacagaagccaaaggatttggtaatcccatcttgtggtgacagaattgttcaggagctcaggcagaggtagtgagggtgaccagagatgaaa<br>gggaaaagcgatggggcaaagagtagctgaggggaagagacaggatggattttgtaagctgaatgcagaccagcagctgcaattttctatcatttgatca<br>ggcccatttgctgagcagagaaatacagggtgggtggttataccactgccacattatccttttcgaattgagtctaaattgattcaggttttgagaaggc<br>ccaggaagcactgatgactgctgtcgcaggaaaaaaaacagccttcaaataagcaaagggcatcgtgaagt	UCSC	<UL><LI>Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol. 2000 Jun;17(6):915-28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10833198">PMID:10833198</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic	
0	chr11	5247055	5247056	2000390	0	-	L1b-thal; RIP_L1_chr11_005_01	CCCAACCATAAAATAAAAGCAGAGAGG	GAATAACAGTGATAATTTCTGGGTTAAGGCAA	LINE	L1	L1M2	attcataatctccctactttattttcttttatttttaattgatacataatcattatacatatttatgggttaaagtgtaatgttttaatatgtgtacaca<br>tattgaccaaatcagggtaattttgcatttgtaattttaaaaaatgctttcttcttttaatatacttttttgtttatcttatttctaatactttccctaa<br>tctctttctttcagggcaataatgatacaatgtatcatgcctctttgcaccattctaaagaataacagtgataatttctgggttaaggcaatagcaatat<br>ctctgcatataaatatttctgcatataaattgtaactgatgtaagaggtttcatattgctaatagcagctacaatccagctaccatt<font color="green"><u>CTGCTTTTATTTT<br></u></font><font color="red">AGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATACTTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAGCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCTACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAGGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTTTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CTGCTTTTATTTT</u></font>atggttgggataaggctggattattctgagtccaagctaggc<br>ccttttgctaatcatgttcatacctcttatcttcctcccacagctcctgggcaacgtgctggtctgtgtgctggcccatcactttggcaaagaattcacc<br>ccaccagtgcaggctgcctatcagaaagtggtggctggtgtggctaatgccctggcccacaagtatcactaagctcgctttcttgctgtccaatttctat<br>taaaggttcctttgttccctaagtccaactactaaactgggggatattatgaagggccttgagcatctggattctgcctaataaaaaacatttattttca<br>ttgcaatgatgtatttaaattatttctgaatattttactaaaaag	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Kimberland ML, Divoky V, Prchal J, Schwahn U, Berger W, Kazazian HH Jr. Full-length human L1 insertions retain the capacity for high frequencyretrotransposition in cultured cells. Hum Mol Genet. 1999 Aug;8(8):1557-60.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10401005">PMID:10401005</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	63	NA	NA	b-Globin related	intron:HBB:NM:000518:2/3	
0	chrX	154159018	154159019	2000391	0	-	JH-27; RIP_L1_chrX_153_01	NA	NA	LINE	L1	NA	gttgaagaaacttgatttcaaagtttctagtacatcaaataatctgatttcaacaattccatcagacaatttggcagcaggtactgataatacaagttcc<br>ttaggacccccaagtatgccagttcattatgatagtcaattagataccactctatttggcaaaaagtcatctccccttactgagtctggtggacctctga<br>gcttgagtgaagaaaataatgattcaaagttgttagaatcaggtttaatgaatagccaagaaagttcatggggaaaaaatgtatcgtcaacagagagtgg<br>taggttatttaaagggaaaagagctcatggacctgctttgttgactaaagataatgccttattcaaagttagcatctcttt<font color="green"><u>GTTAAAGACAAACAAAACT<br></u></font><font color="red">AGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGG<br>GTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAANNNNNNNNNN</font><font color="green"><u>GTTA<br>AAGACAAACAAAACT</u></font>tccaataattcagcaactaatagaaagactcacattgatggcccatcattattaattgagaatagtccatcagtctggcaaaata<br>tattagaaagtgacactgagtttaaaaaagtgacacctttgattcatgacagaatgcttatggacaaaaatgctacagctttgaggctaaatcatatgtc<br>aaataaaactacttcatcaaaaaacatggaaatggtccaacagaaaaaagagggccccattccaccagatgcacaaaatccagatatgtcgttctttaag<br>atgctattcttgccagaatcagcaaggtggatacaaaggactcatggaaagaactctctgaactctgggcaaggccccagtccaaagcaattagta	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Kazazian HH Jr, Wong C, Youssoufian H, Scott AF, Phillips DG, Antonarakis SE. Haemophilia A resulting from de novo insertion of L1 sequences represents anovel mechanism for mutation in man. Nature. 1988 Mar 10;332(6160):164-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2831458">PMID:2831458</a>.</LI></UL>	E:Insertion-specific detection:PCR	incomplete repeat sequence	NA	NA	NA	Haemophilia A	exon:CDS:F8:NM_000132:14/26	
0	chrX	31893390	31893391	2000392	0	-	JH-1001; RIP_L1_chrX_031_01	NA	NA	LINE	L1	L1HS	gcagttggctatgcctttgtgtaaggtgtgtgttttgaaattccaaaaaggtattagtttctttaaagcaaagaatttttgtagcaggttaatgaataat<br>tttgaatacattggttaaatcccaacatgtaatatatgtaaataatcaatattatgctgctaaaataacacaaatcagtaagattctgtaatatttcatg<br>ataaataacttttgaaaatatatttttaaacattttggcttatgccttgagaattatttacctttttaaaatgtattttcctttcaggtttccagagctt<br>tacctgagaaacaaggagaaattgaagctcaaataaaagaccttgggcagcttgaaaaaaagcttgaagaccttgaagagcagttaaa<font color="green"><u>TCATCTGCTGCT<br></u></font><font color="red">TGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATA<br>ATATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTTTTTGCTATTGTGAATAGTGCCGCA<br>ATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTT<br>CTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCT<br>CCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGT<br>GATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG<br>TTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTG<br>CCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGT<br>GTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTT<br>TAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGAGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAA<br>TAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGTGGCATTATTTCTGAGGGCTCTGTTCTGTTCCAT<br>TGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGGTAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCACACCACTGCACTCCAGCCTGGGTGTCAAAGCGAGACCCTGTCTCAGGAAAAAAAAAA<br>AAAAAAAAAAAAAAGGCTTAATTGATTGAACCAGATTCGAGAAAACAGTGCTAAATTATAATTTTCTCAATACTGTAAATATTTTTCAATCTTCAGCTTC<br>ATTAACTTCTATAATTGAAATTATCCCAATTATTACCTGACATGTACTAAAATTCCCTAAAATGGATCTTGAGTAACATTTTCACAGTACGATAATTTTT<br>CTCTCTGTATATATTTATATAGTCACATATATGCACATACATTATACAAGCATTACTTTTCTATAACTGTAAGGTCAGAATTTGAAGTTGTGTTTTCTTT<br>ATCTTTTTATTTCCAATACTTGGCATCAAGTTGATATTCATTAGAAGTAAAGGAGGAAGGAAATGAATAATCTTCAGATACTAAGAACATTACACTTAAA<br>TTATTATTAAATCTAATTTGCATTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCATCTGCTGCT</u></font>gtggttatctcctattagga<br>atcagttggaaatttataaccaaccaaaccaagaaggaccatttgacgttaaggtagggaactttttgctttaaatatttttgtcttttttaagaaaaat<br>ggcaatatcactgaattttctcatttggtatcattattaaagacaaaatattacttgttaaagtgtggtaaggaagactttattcaggataaccacaata<br>ggcacagggaccactgcaatggagtattacaggaggttggatagagagagattgggctcaactctaaatacagcacagtggaagtaggaatttatagcca<br>aggagcagtgtaggagtcagtagatggaaaattattaagaggaaacatcaggggtaagtgggattctg	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Holmes SE, Dombroski BA, Krebs CM, Boehm CD, Kazazian HH Jr. A new retrotransposable human L1 element from the LRE2 locus on chromosome 1qproduces a chimaeric insertion. Nat Genet. 1994 Jun;7(2):143-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7920631">PMID:7920631</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Dystrophin related	exon:CDS:DMD:NM_004011:20/51	
0	chrX	154158414	154158415	2000393	0	-	JH-28; RIP_L1_chrX_153_02	NA	NA	LINE	L1	NA	caaaaaacatggaaatggtccaacagaaaaaagagggccccattccaccagatgcacaaaatccagatatgtcgttctttaagatgctattcttgccaga<br>atcagcaaggtggatacaaaggactcatggaaagaactctctgaactctgggcaaggccccagtccaaagcaattagtatccttaggaccagaaaaatct<br>gtggaaggtcagaatttcttgtctgagaaaaacaaagtggtagtaggaaagggtgaatttacaaaggacgtaggactcaaagagatggtttttccaagca<br>gcagaaacctatttcttactaacttggataatttacatgaaaataatacacacaatcaagaaaaaaaaattcaggaagaaata<font color="green"><u>GAAAAGAAGGAAACATT<br></u></font><font color="red">AGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGG<br>GTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAANNNNNNNNNN</font><font color="green"><u>GAAA<br>AGAAGGAAACATT</u></font>aatccaagagaatgtagttttgcctcagatacatacagtgactggcactaagaatttcatgaagaaccttttcttactgagcactag<br>gcaaaatgtagaaggttcatatgacggggcatatgctccagtacttcaagattttaggtcattaaatgattcaacaaatagaacaaagaaacacacagct<br>catttctcaaaaaaaggggaggaagaaaacttggaaggcttgggaaatcaaaccaagcaaattgtagagaaatatgcatgcaccacaaggatatctccta<br>atacaagccagcagaattttgtcacgcaacgtagtaagagagctttgaaacaattcagactcccactagaagaaacagaacttgaaaaaaggataa	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Kazazian HH Jr, Wong C, Youssoufian H, Scott AF, Phillips DG, Antonarakis SE. Haemophilia A resulting from de novo insertion of L1 sequences represents anovel mechanism for mutation in man. Nature. 1988 Mar 10;332(6160):164-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2831458">PMID:2831458</a>.</LI></UL>	E:Insertion-specific detection:PCR	incomplete repeat sequence	NA	NA	NA	Haemophilia A	exon:CDS:F8:NM_000132:14/26	
0	chr9	108380217	108380218	2000394	0	+	L1FCMD; RIP_L1_chr9_105_01	GGTGAAGCATCTTAAGTCTAATCC	TTCCTAGGTCAACATCTTTGC	LINE	L1	NA	cttatcagcaacttagtgttattaaagctaatggtttattcagaaactaaaatatatcatgaaagtttttgaggaagctgagagtgctcagacagtaaaa<br>atagatacatagatagatagaaggttcaggtgactgctcaaacaaagtcatttagtttgaggtttaatttttaaaaataattttggtgaagcatcttaag<br>tctaatcctgtgaaataaaatccattctatagccccagccactcaagaggccaaggcaggaggatcacttgagccaggagtttgcgtacagcctgggcaa<br>tatagtgagactctgtctctttaaaaaaaaagaaaaaaaatccttgttacaaatataatttgttataataactaattttttccaaacctaaa<font color="green"><u>ttttgtta<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>ttttgtta</u></font>aaaaaatttaatcttctttttaggatggtatcgacaatgcaacattattccttatagcaaagatgttgacctaggaattttt<br>atacaagattacaaatctgatattattttagcatttcaggatgcaggacttccgctcaaacacaaatttgggaaggtcagtaacaaaagtcggcttcatt<br>tcataagtaacatatctcacttgtaaagtttacattaagcaactcagatatggttaagaatgctacatacataattttatcactcagtattgactaggat<br>gagttcagcagaagcctgttaccacttgtaatttctgcactgtctaggcaaaagcaagaaaatctggctttctactgggttggtgcaaaagtaattgtgg<br>tttttgccat	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Kondo-Iida E, Kobayashi K, Watanabe M, Sasaki J, Kumagai T, Koide H, Saito K,Osawa M, Nakamura Y, Toda T. Novel mutations and genotype-phenotype relationships in 107 families withFukuyama-type congenital muscular dystrophy (FCMD). Hum Mol Genet. 1999 Nov;8(12):2303-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10545611">PMID:10545611</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	NA	NA	NA	NA	Fukutin related	intron:FKTN:NM:001079802:8/11	
0	chr5	112175867	112175868	2000395	0	+	APC; RIP_L1_chr5_112_01	NA	NA	LINE	L1	L1HS	acttgatagttttgagagtcgttcgattgccagctccgttcagagtgaaccatgcagtggaatggtaagtggcattataagccccagtgatcttccagat<br>agccctggacaaaccatgccaccaagcagaagtaaaacacctccaccacctcctcaaacagctcaaaccaagcgagaagtacctaaaaataaagcaccta<br>ctgctgaaaagagagagagtggacctaagcaagctgcagtaaatgctgcagttcagagggtccaggttcttccagatgctgatactttattacattttgc<br>cacggaaagtactccagatggattttcttgttcatccagcctgagtgctctgagcctcgatgagccatttatacagaaagatgtggaattaa<font color="green"><u>GAATAATG<br></u></font><font color="red">TGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAG<br>GAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTTATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAATAACAATAAATGAGATAAAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATAATG</u></font>cctccagttcaggaaaatgacaatgggaatgaaacagaatca<br>gagcagcctaaagaatcaaatgaaaaccaagagaaagaggcagaaaaaactattgattctgaaaaggacctattagatgattcagatgatgatgatattg<br>aaatactagaagaatgtattatttctgccatgccaacaaagtcatcacgtaaagcaaaaaagccagcccagactgcttcaaaattacctccacctgtggc<br>aaggaaaccaagtcagctgcctgtgtacaaacttctaccatcacaaaacaggttgcaaccccaaaagcatgttagttttacaccgggggatgatatgcca<br>cgggtgtattgtgttgaagggacacctataaacttttccacagctacatc	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Miki Y, Nishisho I, Horii A, Miyoshi Y, Utsunomiya J, Kinzler KW, Vogelstein B,Nakamura Y. Disruption of the APC gene by a retrotransposal insertion of L1 sequence in acolon cancer. Cancer Res. 1992 Feb 1;52(3):643-5.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1310068">PMID:1310068</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Colon cancer	exon:CDS:APC:NM_000038:16/16	
0	chrX	32235037	32235038	2000396	0	+	Dystrophin; RIP_L1_chrX_031_02	GCTAAGGACTTTGAAGATCT	CTTGACTTGCTCAAGCTTTTC	LINE	L1	L1PA2	tcatgatggatatttctagcaacttcattttagctaagtatgccacaagttctccttctggaaaggttccaacataaagccgaaatacacactgccccaa<br>agccacaaaacaccttgctgttacgatgcttccctctgtcacagattcaattatattttgcagtttatcagataaaccagctccgtccaggcaaactctc<br>tcatcctgacacaaaaagtccatagcaccgtgctctaatattatcattatgataattttctttctagtaatataatgatgacaacaacagtcaaaagtaa<br>tttccatcacccttcagaacctgatctttaagaagttaaagagtccagatgtgctgaagataaatacaatttcgaaaaaacaaatcaaagacttacctta<br><font color="green"><u></u></font><font color="red">AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCAATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATAAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTTAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTCGTGGGGTAGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACAAGTTAG<br>TGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u></u></font>agataccatttgtatttagcatgttcccaattctcaggaatttgtgtctttctgagaaactgttcagcttctgttagccactgattaaatatctt<br>tatatcataatgaaaacgccgccatttctcaacagatctgtcaaatcgcctgcaggtaaaagcatatggatcaagaaaaatagatggattatgtaaaaca<br>gattatagagatatagcgtatattttttggttatactgacaaagatatcactctgatagtttcctgcatttgcagagtttagtttcaagtaacaaataaa<br>aattaatatacacacctagcatgtacacacaacattttaaaaaaatactcaatataaaagctgattttaaatggaaggttgcaatttttccctttaaaat<br>gaata	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Insertion of a 5' truncated L1 element into the 3' end of exon 44 of thedystrophin gene resulted in skipping of the exon during splicing in a case ofDuchenne muscular dystrophy. Comment in:    J Clin Invest. 1993 May;91(5):1859-60. J Clin Invest. 1993 May;91(5):1862-7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8387534">PMID:8387534</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	Dystrophin related	exon:CDS:DMD:NM_004011:16/51	
0	chrX	46697284	46697285	2000397	0	+	L1RP; RIP_L1_chrX_046_01	CGTATATGGGACCGATTCTCATCTCTTCCG	GCAAAAAGCTTTCAATTTCCTAACTCTGAC	LINE	L1	L1M2	cccccgggagctttctctgactccgaaccctgccttgctctgacttcctgttggagatgatcgattcgagagagggaaagagccgagaacgccctgaatc<br>tcaaatcacctcgtttcacccaccggcagcgtcaagcggggttttgtccagtcgtcgagttacgtatatgggaccgattctcatctcttccggggcttaa<br>tgttctgtggctgttttctcttttgtctgccctccccggcaaatctctttggtgcctcatgatatatttcactgctgaattttctcaattaccaagtgga<br>ctgtttaatgtacagctttactccccctcctcttccagttatccgaaagaaataatgaatatcgcatcagtcttggaatgtgtatt<font color="green"><u>AAGACTGTAAGGTG<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCAAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAC<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAAT</font><font color="green"><u>AAGACTGTAAGGTG</u></font>aaaataagcggcataaaccaggcagtattttactgctggtttaaatgaatgaaaacgcccttatttt<br>tatttttgtatatagccagaaacgaaaaacctttgaaaacctccattagtcttacacaaaacacactcggtcatacatttcataatagttcctctttcta<br>catagttctccatttgtgcttactaaactactttgatggacttatcaattatttctcccaaacaaaatgagagatttttcaaatgggtattatgaacagt<br>taactctttgcttaaggcaacatatctttacccaagattactttataataaatgtattaacgttttggaatcacagacctttctgcatgatttccaatcc<br>ccagcagaatgtattcagg	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Positional cloning of the gene for X-linked retinitis pigmentosa 2. Comment in:    Nat Genet. 1998 Aug;19(4):311-3. Nat Genet. 1998 Aug;19(4):327-32.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9697692">PMID:9697692</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	RP2 related	intron:RP2:NM:006915:1/5	
0	chrX	138630581	138630582	2000398	0	+	L1FIX; RIP_L1_chrX_138_01	NA	NA	LINE	L1	L1PB4	tacactaaaattgtgtgtattttttgaatatatgttatacattaataaatagggtttttaaacctgtagttcataatttagtgaaagtagaatatccaaa<br>catttagttttaaaccaatcaattatagtgctaccatcatttttatgcattattgagaagtttattttacctttctttccactcttatttcaaggctcca<br>aaatttctctccccaacgtatattgggggcaacatgaatgcccccaatgtatatttgacccatacatgagtcagtagttccatgtactttttagaaatgc<br>atgttaaatgatgctgttactgtctattttgcttcttttagatgtaacatgtaacattaagaatggcagatgcgagcagttttgt<font color="green"><u>AAAAATAGTGCTGAT<br></u></font><font color="red">GATACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGT<br>GGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAA<br>ACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATACACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTCTAAT</font><font color="green"><u>AAAAATAGTGCTGAT</u></font>aacaaggtggtttgctcctgtac<br>tgagggatatcgacttgcagaaaaccagaagtcctgtgaaccagcaggtcataatctgaataagattttttaaagaaaatctgtatctgaaacttcagca<br>ttttaacaaacctacataattttaattcctacttgaatctgcttccttttgaaatcatagaaaatatcagtagcttgaattagaccaattaattttctag<br>attgcatcatattttaaatataaactatgtaatcatctacaacctgaattctttctgtgtccaatttgtccaatttttttctctaacatttatatcacaa<br>agcaattaatttgtgtgatttctgcatatgtatttgtaattcatcaagtcaaatcaatgtag	Other	<UL><LI>Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700292">PMID:11700292</a>.</LI><LI>Li X, Scaringe WA, Hill KA, Roberts S, Mengos A, Careri D, Pinto MT, Kasper CK,Sommer SS. Frequency of recent retrotransposition events in the human factor IX gene. Hum Mutat. 2001 Jun;17(6):511-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11385709">PMID:11385709</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	severe hemophilia B	exon:CDS:F9:NM_000133:5/8	
0	chrX	37651238	37651239	2000399	0	+	CYBB; RIP_L1_chrX_037_01	GTTAACAATTACTATTCCATTCTTTCCCCC	CTATGAATAGAGGGAACTCCCTGGTTCCAAG	LINE	L1	L1MA8	tgactatgaggtatgtgatgttaatttctacatcctttgtttaatgagtaaattaatcagaactagaaactatgtagctagatatgttttttgtacaagt<br>ttatatttttatacagttaagcaatggattccagaggagactttatgtcaccagtatgagaacagaaaacataccagttaagccagccatgtcacttact<br>ggctgtttgacctgaggaagatgactgcatctctctgaacctcagtttcctcatttatcaaatagatataatgatacagtttgcagggtggtcatgaaaa<br>ttaaatgagataatatgtatcaaatgtttgacacatagcaagctttcctgttaacaattactattccattctttcccccttaatccaaagtgctgctcaa<br><font color="green"><u></u></font><font color="red">TCCACCCAGAATAAAAAAAAAAAAAAAAAAAAAAAAGAAATAAATAAAAAGAAAAGAAAGAAGAAAGAGAAAAGCAAAATGTCTATTCCGGTCTATTGCC<br>TATTTTTTGAATTTGGATTTTGGTTTTCTTGCTATTGAGTTGTTTGAGTTCCTTATATATTTTGAGTAATAACTCCTTATCATATTGAGTTGTTTGAGTT<br>CCTTATATATTTTGAGTAATAACTCCTTATCAGATGTATTGAGTTGTTTGAGTTCCTTATATATTTTGAGTAATAACTCCTTATCAGATGTATGCTTTGC<br>AAATAAATTTTCCCATTCCATGCAAAAAAAAAAAAAAA</font><font color="green"><u></u></font>caagagttcgaagacaactggacaggaatctcacctttcataaaatggtggcatggatgatt<br>gcacttcactctggtaagtttattaaagaaaacttggaaccagggagttccctctattcatagatacctttttatataggagatcaaccagttttatagt<br>tagattaagtggtggttggatatgttgtatttttttaatgagttttgctcaaaagtatttaccacactttctgccacttcaatattaggatttattcctt<br>taggttttaaagcatttttatttcaggattttcctataaaaatgaaaatatgccatcagaaaagtcaatcctagtgtcctcaccctttgctattctttct<br>agtgtcaaaaatgttaattcactcatgaaaacttattt	Other	<UL><LI>Brouha B, Meischl C, Ostertag E, de Boer M, Zhang Y, Neijens H, Roos D, KazazianHH Jr. Evidence consistent with human L1 retrotransposition in maternal meiosis I. Am J Hum Genet. 2002 Aug;71(2):327-36. Epub 2002 Jul 1.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12094329">PMID:12094329</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	56	NA	NA	Chronic granulomatous disease	exon:CDS:CYBB:NM_000397:4/13	
0	chrX	20222230	20222231	2000400	0	+	RSK2; RIP_L1_chrX_019_02	GGAGGAGATTAACCCACAAAC	AACCTCTACCAAGATATCACG	LINE	L1	L1	TAAAAACATTAAAATAAATATATAAATTTGAAGATGAATCAAACCCAGTTTTAATCTTCTAAATGTTTACTTGTATAAAACTCAATATGAATTTATAATA<br>CGTCTTTTATAACGTGGCAACTCTGGTTCTCACTAGTTATATGATTCCTAGCCTAGCAGGAAAAATTCACTAAAAGTCAGCCTAAATTTAAAGCTGGTAA<br>CAGGAACCTATTCAGAATGTAAATAACATGCCAAGGAGTCCCATGAGCTCTATTGAGACCTTTCAGTTTGTTTAGACTACATGAACATTACAAATAGCAG<br>CAACACTTACCTTTCAGTGTGGCCTTCTTCAATACCTTCATGGCATAAAGCTGCCTAGCATCAGAGCCTGAGATTTTTTTAACTAA<font color="green"><u>GAAAACCTGCATTT<br></u></font><font color="red">CCTGAATGGTAATGCCTAGNNNNNNNNNNAAAAAAA</font><font color="green"><u>GAAAACCTGCATTT</u></font>AAGTAAGAGAAAATAAATATTACAAAGTAGTATAAACTATATCCTTGTTA<br>AAATAAGACCCTGCTATAATACAGTTTATTATTATAATATAGATTCAGATATACTGTAGATTATTTCCCCTAAAATGTATCAATTATAAATACTAGTTAT<br>AAACATTTGTTATAACTTGGGGTGTCAATATAAGGGAATACATTTTTTTCATTTTGTTGTTTGCCAGTTCCCAAAGAGCATGTAACACATTAAGACAGAA<br>AAAAACCCTTTAAACTACATATGTATGAATTAGATGGAAAAAATCCCAAAATGTTTAAAGTATAACACAGGTGGTATGATGTCCTGCTTTTAACAAAACA<br>GAATTCTACTGAGCCCGTCAAAATTGTTATACGGCG	Other	<UL><LI>Martinez-Garay I, Ballesta MJ, Oltra S, Orellana C, Palomeque A, Molto MD,Prieto F, Martinez F. Intronic L1 insertion and F268S, novel mutations in RPS6KA3 (RSK2) causingCoffin-Lowry syndrome. Clin Genet. 2003 Dec;64(6):491-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14986828">PMID:14986828</a>.</LI></UL>	E:Library screening:TE-specific hybridization; E:Insertion-specific detection:PCR	The primers were designed for RT-PCR on cDNA targeted for region from exon 2 to exon 5.The insertion size is estimated to be at 2.8kb.	NA	NA	NA	Coffin-Lowry syndrome (CLS)	intron:RPS6KA3:NM:004586:3/22	
0	chrX	85213962	85213963	2000401	0	-	CHM; RIP_L1_chrX_085_01	GAATTTCAGCTAATCAATTCTGAGCCTG	CGGAGGACTGGAATTTACTGCTTTATGA	LINE	L1	Ta	atatgttaggttaaattattagcagggtctgaggaggaactctaactaaacacattatttctgcagtgaaatatatgaatatttatgttaatttggacaa<br>acaaagccagagtgccttatcagtatggatcaggttttgctgctaaacatgttttgtaaaaacttatggattgcaaagttttttgaattttgaatttcag<br>ctaatcaattctgagcctgtaatagattgtgttatgtattataatatttataggtatgattgtttctacaaataataaaaaatatagcaaaattatgtat<br>ctttattgttttccaatttttctactatttcaacttttatcttgtaaaatattttctttgtacagctgctgtattctcgaggatta<font color="green"><u>CTAATTGATCTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>CTAATTGATCTTCT</u></font>aatcaaatctaatgttagtcgatatgcagagtttaaaaatattaccaggattcttgcatttcgagaaggacgagtg<br>gaacaggtactgtgctgatcaagaattgtaactgggcatcagcttaagttattatggtttgttttggaaagataagcaaataagattgttattttcctca<br>taaagcagtaaattccagtcctccgtggtgatttacaaatgtaaatgcttaattaaaatttctagtgctaattttctcatggcttactctgcagcttggt<br>gttggtaccaagcagcacacaaaaaaccaaaaagcacaccagagttactatacccaagactagtcacacaaatccttttctcccattaatcaagattttg<br>gagagggaaa	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>van den Hurk JA, van de Pol DJ, Wissinger B, van Driel MA, Hoefsloot LH, de WijsIJ, van den Born LI, Heckenlively JR, Brunner HG, Zrenner E, Ropers HH, CremersFP. Novel types of mutation in the choroideremia ( CHM) gene: a full-length L1insertion and an intronic mutation activating a cryptic exon. Hum Genet. 2003 Aug;113(3):268-75. Epub 2003 Jun 25.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12827496">PMID:12827496</a>.</LI></UL>	E:Insertion-specific detection:PCR; E:Insertion-specific detection:PCR	NA	NA	NA	NA	Choroideremia	exon:CDS:CHM:NM_000390:6/15	
0	chrX	33229476	33229477	2000402	0	-	DMD; RIP_L1_chrX_032_01	NA	NA	LINE	L1	Ta	tggatattaatcagaacacagttgagcattgtttgaattcacagagcttgccatgctggaagcacaaccttatatgtagtgaccatggacagtcctatta<br>tgggaaaccaacttgagagagaaggcgggtcacttgcttgtgcgcaggtcctggaatttgaaatatccgggggcctctacagaatcctggcatcagttac<br>tgtgttgactcactcagtgttgggatcactcactttccccctacaggactcagatctgggaggcaattaccttcggagaaaaacgaataggaaaaactga<br>agtgttactttttttaaagctgctgaagtttgttggtttctcattgtttttaagcctactggagcaataaagtttgaagaac<font color="green"><u>TTTTACCAGGTTTTTTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TTTTACCAGGTTTTTTTT</u></font>atcgctgccttgatatacacttttcaaaatgctttggtgggaagaagtagaggactgttgtaagtacaaagt<br>aactaaaaatatattttactgtggcataacgtttagtttgtgacaagctcactaattaggtagattgattttaaattatcacagtagtttgcaaagaagc<br>ataaatgttatatatactgcatatatatatgtatttattcaggaatatatatttttcattgggaaaacttttcaacagaaatggagtgtaaaagtttttc<br>tttgcgatagaactaaacacatgatttcttgattaacaaaccactgcagtaatagaatatgcagaatgtcatttgactataacagatttattttgattgc<br>tgtgagatag	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Yoshida K, Nakamura A, Yazaki M, Ikeda S, Takeda S. Insertional mutation by transposable element, L1, in the DMD gene results inX-linked dilated cardiomyopathy. Hum Mol Genet. 1998 Jul;7(7):1129-32.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9618170">PMID:9618170</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	X-linked dilated cardiomyopathy	exon:5UTR:DMD:NM_004006	
0	chrX	138642965	138642966	2000403	0	+	F9; RIP_L1_chrX_138_02	NA	NA	LINE	L1	NA	ccccatgaagcaaattttgccatcagagaaactgactcatggggaaaaaatccaaggacctcaaatcaccaaaagaagccattcctcagatttgcctaag<br>cttaagcttccctgtctctcattgtgtgttgctttcaatgcagttacataaatggcttttttgtttatgcaccaaaaacactaattcatctgcaaagctc<br>acatttccagaaacattccatttctgccagcacctagaagccaatattttgcctattcctgtaaccagcacacatatttatttttttctagatcaaatgt<br>attatgcagtaagagtcttaattttgttttcacaggttgttttgaatggtaaagttgatgcattctgtggaggctctatcgttaat<font color="green"><u>GAAAAATGGATTGT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAAAATGGATTGT</u></font>aactgctgcccactgtgttgaaactggtgttaaaattacagttgtcgcaggtaaatacacagaaagaataataatc<br>tgcagcaccactagctctttaatatgattggtacaccatattttactaaggtctaataaaattgttgttgaataaattgggctaaaggcagaagggtcat<br>aatttcagaacccacgtcgcaccgtcctccaagcatccatagttcttttgatatacccctattatcactcatttcagtgaggtacaattagttcttgatg<br>tagccatttccataccagaaggccttcccaaaaatcagtgtcatgtcaccgatccttttatctctggtgcttggcacaacctgtagcaggtcctcagaaa<br>acaaacattt	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Mukherjee S, Mukhopadhyay A, Banerjee D, Chandak GR, Ray K. Molecular pathology of haemophilia B: identification of five novel mutationsincluding a LINE 1 insertion in Indian patients. Haemophilia. 2004 May;10(3):259-63.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15086324">PMID:15086324</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Haemophilia B	exon:CDS:F9:NM_000133:7/8	
0	chrX	37654943	37654944	2000404	0	+	CYBB; RIP_L1_chrX_037_02	NA	NA	LINE	L1	NA	ctatgaaacctggcttccttgccttgagacaggataaactctaagttgtaacttaccctccagagttgccttgcaggatcaggctgaagctatcccctgt<br>gagactgcctgatttcacccccttgcttgacttgtttgtcttttctatcctattccctactctcttaccagtttctcttggagcacatgttttctaagtc<br>acttgcccatgaagtctcatctcaggatctgcttctggggagcacagctgatgatgttcagcattcccagaatatatttgcaaactaagcactgtggccc<br>tttcaaaatcaaagggagaaagagccttcagacacttttaggacatcctgtagttgattgatttcctttattttctaccccctt<font color="green"><u>AGAAATAACTATTTAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGAAATAACTATTTAA</u></font>gtacatcagttcacatttcctatgacatcttaaccatgtaagacattttaaaatttagaaacatctatttcaaa<br>tctatatctgtctgtgagggatgattaggattattcaaagagggggtgaaaatatctattgttctatacattggacactttataatagtcctgcatttga<br>gaacctataatattgtgcttgcgcacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatattttacagaaccctgaaggag<br>gcctgtacctggctgtgaccctgttggcaggcatcactggagttgtcatcacgctgtgcctcatattaattatcacttcctccaccaaaaccatccggag<br>gtcttacttt	Other	<UL><LI>Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15983781">PMID:15983781</a>.</LI><LI>Meischl C, Boer M, Ahlin A, Roos D. A new exon created by intronic insertion of a rearranged LINE-1 element as thecause of chronic granulomatous disease. Eur J Hum Genet. 2000 Sep;8(9):697-703.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10980575">PMID:10980575</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	Chronic granulomatous disease	intron:CYBB:NM:000397:5/13	
0	chr1	12876225	12876226	2000405	0	-	1104685019043	NA	NA	LINE	L1	L1HS	gcataggataccattaggaggtatacctaaggctaaatgacgagttaatgtgtgcagcacaccaacatggcacacgtatacatatgtaacaaacctgcac<br>gttgttcacatgtaccctaaaacttaaagcataataataataataaaagaaactcactcaaaaccgctcaactacatggaaattgaacaacctgctcctg<br>aatgactactgggtacataacgaaatgaagacagaaataaagacattctttgaaaccaatgagaaaaaagacacaacataccagaatatctgggacacat<br>tcaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcagaaaagatctaaaattgacaacctaacatcactatt<font color="green"><u>GAAAGAACT<br></u></font><font color="red">TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGAACT</u></font>gagaagcaagagcaaacata<br>ttcaaaagctagcagaaagcaagaaatagctaagatcagagcagacctgaaggaaatagagacacaaaaaacccttcaaaaaatcaatgaatccaggagt<br>tggttttttgaaaagatcaacaaaattgatagactgctagcaagactaataaagaagaaaagagagaagaaacaaatagatgcaataaaaaatgataaag<br>ggcatatcatcacggatcccacagaaagacaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggatta<br>attcctcgacacatacaccctcccatgactaaaccaggaagaagttgaatccctgaatagatccataatag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	102568927	102568928	2000406	0	+	1104685455798	NA	NA	LINE	L1	L1HS	ttttaaaggcctttataatttctataatttatatttaatttggcaattaaatcccttttaattttgctctagcacactagactttttctcttcatacttt<br>atgaggtaaattttgctatttgattttcacctgagttgtttcttttaatagcaaaattaaggctatttagttgacaactgcctagggttatcaagaattg<br>atacaggttacctattgaaacaggttatccagaaattgaaagttgtagatgggaaaaaaagttttttgtgaatttataagatgtacttctatcagcatac<br>ctaatacatctacatatttatgtgttgtatacacagtgttgcattactgaaaatatatagaagagctctcattaattggcttaag<font color="green"><u>CACTTTCATTTTCTT<br></u></font><font color="red">ACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAA<br>GGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAA<br>GAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATACAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATT<br>CATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACG<br>AGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAAT<br>ATACATTTTTTTCAGCACCACACCACACTTATTCCAAAATTGACCATATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAAC<br>AAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTG<br>AATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCAT<br>TCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACT<br>AGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAA<br>AAAATCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAAATTGATGGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAG<br>ACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGA<br>AAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAA<br>ATTGTGGCAAAAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCAT<br>TCCTCCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACAC<br>AACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAG<br>CTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAG<br>ACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGG<br>GACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACA<br>AGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAG<br>GAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAA<br>CTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTC<br>CCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACATGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGG<br>AAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAG<br>ATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCC<br>AAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAGACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGT<br>ACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAA<br>GCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACA<br>AAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGG<br>GCAAGGACTTCATGTCCAAAACACCAAAAGCAATTGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGA<br>AACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAAAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTC<br>AAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAAC<br>ACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAA<br>GTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTG<br>TGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCTATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAG<br>ACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTG<br>GCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAA<br>CTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAATATCACACTCT<br>GGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCAC<br>ATGTATACATATGTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CACTTTCATTTTCTT<br></u></font>ttaaatcaaatattttatcagaaaaagagactagtcaaatgctttttcaagttcatgtaacttaagtaaaatctttaataaataagctagctttaaaatt<br>attggtaaagtataataatattagaaatgtcttaagaattgccagcatacatttttatttgcatttataaatcaagcaattttatacttatctatgccaa<br>atactataaggtgtcaaaagttggcataggggttacaaaactgtaaacccagcaccaaacagtgatctttgcttgtgtaatttttaataaataagacatt<br>gatattggcgtaatgaaaaaagctacatcttgaattatttagtaaaattactataacttctaatcttgtggctttaggtagtaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	19216667	19216668	2000407	0	+	1104685340975	GCATTGCATTTTCCTTTCTGA 	GAACAATACACTGCCCTCACC	LINE	L1	L1HS	ataagttttataatagatatttgtttaaaaagtaggctgagccaagtaaagagtcattatatacttttcttcttaaatggaaaatatgctttcatatgat<br>tttgaaaagacgcaagaatagcaatgttttaggcatatctggtactggctttgtgtaggaaatgataatagtcaattattaccatttttaataagagcat<br>tgcattttcctttctgaagtgctctaaagtgactagttttgcatataaaactgtgaatatcttggggacagagctgcatcacatttctttgtactctgtg<br>tctagcacaatacctggtacacagtaaaaagacaagaaatatttgttttccaaatagttttttttttactacaaatatatttttt<font color="green"><u>TATGTCTCACTTCTT<br></u></font><font color="red">TGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG<br>CCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCT<br>GACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCA<br>TGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGCACACGTATGTTTATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGG<br>GGGGAGGGATGGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGAACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TATGTCTCACTTCTT</u></font>attattggattttcatcatttccat<br>cactttacacattgtgttaatgatctatagttttaatataaaaacttcaatgtcagataaatttcctttctattttaaagtataatctatatctcaggca<br>agtaaaaattctattcttcatgtaaagtattattttggaaaacaaattctgaagtaaagtttttttttgcttgagaaatgagtgttacattttcacaatt<br>tagaattttaaacatagcttagggtgaccattgtttaaggggaaaatgattagactttgagattcttaaggtgagggcagtgtattgttctggctgcctt<br>tatatttggaattcctagcatatagtaggaaatcaataaatattgaattcaatcagtaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1393	520	NA	intergenic	
0	chr10	59508864	59508865	2000408	0	+	1104685134100	NA	NA	LINE	L1	L1HS	aatagtgctgcaatgaacatacacatgcatgtatctttgtaatagaataatttatattcctttgggtatatatccagtaatgagattgctgggtcatatg<br>gtatttctggtactaggtctctgaagaatcatcgcactgtctttctcaatggtcgaactaatttacattcccaccagcatttctccgcagcctcaccagc<br>atctgttgtttcttgactttttaataattgccattctgactggcgtgagagggtataccactatggttttgatttgcatttctctaatgatgagtgatgt<br>tgggcttttttacatatgtttgttggctgcacaaatgtcttctttagataagtgtctgttcatgtcctttgctcactttttaatggggttgtttt<font color="green"><u>NNNNN<br></u></font><font color="red">TAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAAT<br>AAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTCATACAAAAATCAATTCAAGATGGATTAAAGATT<br>TAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACACAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAA<br>AGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCT<br>ACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACA<br>ACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGC<br>CATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGA<br>TGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAG<br>AAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGC<br>ACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCA<br>GCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACC<br>GCATATTTTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGG<br>GGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACA<br>ATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tttgtttaagttc<br>cttgtagattctggatattagacttttgtcacatggatagattgcaaaatatttctcccattttgtatgttgtctgttcactctaatgatcatttctttt<br>gctgtacagaagttcttcagtttaattagatcccatttgtcaatttttgcttttgttgcaattacttttgacattttcatcatgaaatctttgccaatgt<br>ctatgtccaatagtattgcctagatttccttctagggtttttatagttttttattttacctttaaatctttaatctctcgagttaatttttgcataaggt<br>gtaaggaagaggtccagtttcaattttctgcatatggctagccagttctcccaccatcatttgtcaaatagggtatcctttc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	26418544	26418545	2000409	0	+	1104685625761	TGCTTCAGATAAATAAGACTGAGC 	CCTCAGTCCTTGCGATTAGC	LINE	L1	L1HS	aggaatactatgcatccataaaaaaagatgagttcatgtcctttgcaggtacatgaatgaagctggaaaccatcattctcagcaaactaacacaggaaca<br>gaaaaccaaataccacatgttgtcacttataagtggaagttgaacaatgagaacacatggacacagggaggggaacatcacacgtcgggggcctgtcagg<br>tggtgggggactaggggagggataacattaggagaaatatctaatgtagatgatgggttgatgagtgtggcaaaccactatggcacatgtatacctatgt<br>aacaaacctgcacgttctgcacatgtatcccaggacttaaggtataataataaaaaaatgcttcagataaataagactgagctaactaacctctcac<font color="green"><u>TCT<br></u></font><font color="red">CTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATAT<br>CATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGG<br>ACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTAT<br>ATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAA<br>TGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGA<br>CATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAG<br>ATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGAT<br>GACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>TCT</u></font>aaaaaacaaaaacaaaaaaataaagtaaaatggattattccctgcagccagaaggctgtgaaacagaacctttagtttct<br>tattctcctcagttcataggacatttaggtgcagctattgtcatcagttacacatgaagaaacttgtattagctgcttcaagctaatcgcaaggactgag<br>gacattttagtactcagtacttagtacttcagttctcagtacttaagtactttgaacctcagtgttctcagtagtaaaaatgatgtttttatatgtatat<br>gtattttttttctaagagttgtaatgagtaagatctaacctcatagcctaggctttagaagttttcaactggtattataatgttttatttttagcttgct<br>ttcctcttatacaaatg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1042	224	NA	intron:ANO3:NM:031418:1/27	
0	chr11	33670139	33670140	2000410	0	+	1104685623868	AGGAGGTGCTTTGAGCTCTG 	CCCTTCTTGTCTCCCAACAA	LINE	L1	L1HS	accacgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccatcatggctg<br>gccgaatcagaacattattaaacgcagtcttttgttattaaggtttccttctttatcaacaacctgtgaggtccgtattttcaggaaaggagaaaatagc<br>taacaatacagagtagaaatgatgatgattcttaacccaagctcatgcagagtccttttgtgctttgataatgtggaaatccatagaaaaggtggcaatt<br>tagaatgataactatgattactttctgtcttctaaagaggaggtgctttgagctctgccagaagataattggaagctggtggtt<font color="green"><u>TGGCCTAGTGTATTTA<br></u></font><font color="red">TCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAA<br>AGATCAGATAGTTGTAGATATGCGGTGTTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGT<br>TACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCGATGCGGGCTCTTTTTTGG<br>TTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTA<br>TGGCCATTTGAATTGATCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTGCTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AATTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAATACTTAGAGTATAATAAAAAAAATAAAA<br>AATAAAAATAAATAAATAAATAAATAAATAAATAAAAATAAAAAAATAAATAAAT</font><font color="green"><u>TGGCCTAGTGTATTTA</u></font>gctaatggcatttataccatggaaaaggt<br>tactgctggtggcctgggatttctgcactgcagttcaggagactcttgatcatattttacccgttaactctgtgaagaaattggactccacatctaatgt<br>ccaatccaattttgctagcagtcataatggatctatgccaagcagaattaaaacatcctacagccttcctgttgttgggagacaagaaggggatttcaaa<br>aaagacaacagggctaacacatcttccccactagactctttacagatggaattaatggtaataaaaataacagcaacagttggcatctgttgagctccca<br>ttgtctactggacacagctaagtgctatgtagaaattatctcttctaatccgaca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1953	284	NA	intron:C11orf41:NM:012194:16/20	
0	chr11	98196306	98196307	2000411	0	-	1104685400974	NA	NA	LINE	L1	L1HS	ttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactacca<br>tcagagtgaacaggcaacctacaaaatgggagaaaattttcacaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaat<br>ttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaa<br>aaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcat<font color="green"><u>TTTCCTGACTTTTT<br></u></font><font color="red">AATGGCACATGTATACATATGTAACTAACCTGCACAATGTACACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAA</font><font color="green"><u>TTTCC<br>TGACTTTTT</u></font>gaacaggtgctggagagggtgtggagaaataggaacacttttacactgttggtgtgactgtaaattagttcaaccattgtggaagtcagtg<br>tggcgattcttaagggatctagaactagaaataccatttgacccagccatcccattactggctatatacccaaaggactataaatcatgctgctataaag<br>acacatgcacacgtatgtttattacggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtg<br>gcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagagacatggatgaaattgtaaataatcattctca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	134305642	134305643	2000412	0	-	1104685297600	TGGATCCCTTTGGCTACATC 	GTTGGTGGTCCTGACGCTAT	LINE	L1	L1HS	atcccctgactgctgcactggggagtgactgtggtgagggacgtgtcctcccccagggcctctgccctccatttgcctcacaacccagggcccagcacag<br>tcgggatcaccaaggttagagctgtttcctcctctcagaaccacagagggggccctgaaagtgcaagattggaatgccactccaaatgccacttggcttc<br>cctgggacccactaactgggcagcagggacctcagtgctctgggaggagttggtggtcctgacgctatgcacccctttgggcagaatgacccctagggga<br>cagaggcagcgaggggcatcactcagattacctggtggaccctcacacaccactctcattaaataggtaagagaataaaagctcagaaaggttcg<font color="green"><u>NNNNN<br></u></font><font color="red">ACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGA<br>GATCACATGGACACAGGAAGGGGAATATCACACTCTAGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGA<br>TGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAAAA<br>AAAAAAATTTAAAAAAATAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tatggggcaagcccgtgttctagcccagatctgtgtgaggttgaagcctttgaaggaagggcatggccc<br>aggaatagaggatgtagccaaagggatccagaagagttaggcttcagaattccgcccactcatggacagccaggtcccagtgagggccaagaaagaccag<br>ctccctacaccatgagcctggctgaggagccagcctggaaccctgggaaggaagggatctgtgctccatttgggcacgcagaatcatgcctgatcccaga<br>cagactttatgtcatcagcttttcagctttactctccaggatggtggatttgatagaagaaggaattgtctgggttgtatgtccaatatgcaattgtatt<br>gtatatgggacatcctagttctcgct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	582	262	NA	intergenic	
0	chr13	58922382	58922383	2000413	0	+	1104685360107	GAGTTCCTTTTCAAATTTCTCCAA 	TGTGTGAGCATTTTCGGAAT	LINE	L1	L1HS	acacggtgctggataccagaatgcaaaaggaaggaaaagtgaagtgggggcagaatggcataaagaagtacttaattaaaatcttcatggtataattgcc<br>ttcagggctaattaattttgtcttgaggtaagggtaaataaattggagtttattcctgtgtgtttctgcataggtataaggaagtattgggacataattg<br>taatatatttttttttccaaatatgtcaaaggattacatggctaaaggtgatagaaaacagggtgctccatttggaattaaaggaaaacttaaagtcatt<br>gctgcttctctctaaatcttctgaatttatgtgtgagcattttcggaattataaacaatgggagaattcagcttctgaatgtaatatgaa<font color="green"><u>GCTAATTTTC<br></u></font><font color="red">GACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATG<br>GAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGAC<br>AAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACAATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAA<br>AGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACA<br>GAAAGTTAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACA<br>TTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACT<br>ATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGA<br>CTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAA<br>GCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAA<br>AGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAAT<br>CAATGAATCCAGGAGCTGGTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAGAGAGAAGAATCAAATAGACACAAT<br>AAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTA<br>GAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGG<br>CAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCT<br>GAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAA<br>AAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCC<br>ACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAA<br>CCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTAT<br>TTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGG<br>GATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGA<br>GGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGC<br>AAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCA<br>CAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAA<br>AGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAAT<br>GCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAA<br>TCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAA<br>CAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGG<br>GGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCA<br>ATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGA<br>CTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACC<br>ATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAACAAAT<br>TTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAG<br>AAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAA<br>ACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATT<br>CCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACAGGC<br>ACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAT<br>ACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCA<br>AGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTG<br>TGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATAC<br>ATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GCTAATTTTC<br></u></font>tgctcatcggtttggggaatttatatgaggattctcatataaaggaggatataatttattggagaaatttgaaaaggaactctatatatgtatatataat<br>atgtatacacacacatttttgcctgcaattctgtggtgatttgtaggtattatatgtgtataagtacttaatagccaaactgcaaagtagctttgttatg<br>atattaaggattattattgtgaaattttctttttctatatttttttctttagagaatataatgaaattttgcaagaatcattggaaattctttccaaagg<br>agttagaggacagctgaacataatatcagtgtgtactaacaagtagaatattttgcaaacaatataaataaatgtatggcattaatttcc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	6212	151	NA	intergenic	
0	chr13	104296239	104296240	2000414	0	-	1104685249031	NA	NA	LINE	L1	L1PA2	gggaaaattggatagtcacatgtagaataacgaaaccggactcctatctctcaccacatacaaaaatcaactcaacaaatgggttaaagacttagacgta<br>tgacccccaaatacaaaaatactacaagcaaacctagggagaactcttatagacattgagctaaggaaagaatttatgacaaaaccttcaaatgcacagg<br>tagtaaaaacaaaaataaacaaatgagactcaactacagaacttctgctcagcaaaattcaaaataactggactgaaaacacaacctgaaaaatgggcaa<br>aaatatttgtaaactattcatccaacacagaagtaatatccagaatatagaaggaaaccaaaaactcaataaaaaatatctcat<font color="green"><u>TCCTTGCCCACTTTTT<br></u></font><font color="red">AAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACT<br>CAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAA<br>CACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCCACACCAGTTAGAATGGCAATCATTAAAAAGTC<br>AGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGG<br>CGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACA<br>CATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCA<br>CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGAGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATAGATTAAAAATAAAAAATAAAAATAAAAAAAA<br>ATAAAA</font><font color="green"><u>TCCTTGCCCACTTTTT</u></font>catgaagagacaacatttctcaaaagaagaaatacaaatggccaacagtatattaaaaaagtgctcaacatcactaat<br>aatcagaaacatgaaaatcacaaccacaatgagacatcatcttaccccattcagaatggctattattaaaaagagaaagaaaataacagatgtatgtaag<br>gatccaaagaaagtgaactcttatacaccgttggtgaaaatgtaaactagtagagtcacaggggaaaacagtatgaacatttctcaaagaactaaaactg<br>gaactactattcaatccagcaatcccactactggatatttatccaaaggaaaagaaatcagtaaatcaaagggatacctgcactcgcatatttactgcag<br>caccat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	79259793	79259794	2000415	0	-	1104685165983	AAGGGACTGACTGAGAGCTGA	CATCCCCAGTGGAAGAAGAA	LINE	L1	L1PA2	tttgctaaattttatcatatgaacaaaccatttttcttgttgcctttcactcaaacagaataccaaatcttttcctttctcttcatattttccttaaatt<br>cctttcatctctggttgagaatttcatctggacttctgaaaatggtgtttctagaaaaagttatatagctcccatctggcactcaaactttgtgtctgtt<br>tttacaacactgggggatggcctcttggggtacctgataacagatcccaaccagtgccaataggtgtcagggcccaccatcaccactcagcacttctctg<br>tggcccagcaccaaccctagactcatgcctatcagagaccatccccagtggaagaagaaaagtaaaggcactgtagtgaatttttataaaactg<font color="green"><u>TGTTTA<br></u></font><font color="red">ATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAA<br>TAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATG<br>GAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTA<br>CCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATCGCCAAGTCAATCCTAAGCCAAAAGAACA<br>AAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATG<br>GAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTT<br>AATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAG<br>ATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACC<br>AAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAAGTACCATCAGAGTGAACAGGCAA<br>CCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAA<br>ACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACT<br>GGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGA<br>GGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAAC<br>TAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGC<br>GGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTAT<br>GCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAAC<br>ACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAT<br>GGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGC<br>ACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAAAAAAAAAAAGAAAAAAAAAAAAAACT</font><font color="green"><u>TGTTTA</u></font>ttccatggaaaccagttgctt<br>tgtattctgagattgtatcttttcttactttttctgtctttaaaatgtcctttcttttgtttggatagcgtattaaaattgccttctttgaaatggttta<br>tctttgcaaaactaaaatgctgtcagctctcagtcagtccctttatctttgttgttgttatttcttttttactactttgtgaaatatcggtctgggtgta<br>gaggttaagagtatacatcttggcctcagtggtcagggctggattcaaattcctgctcctccactccttattggtaaagtaaccatagacatgttgctaa<br>accactataagtttttgtttattcatattacaatggagatatcagtgcctacattgtgaggttgtcaatatat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	2103	226	NA	intergenic	
0	chr13	91626232	91626233	2000416	0	+	1104685252691	GGGTGGTAGCCCCATCTATT 	ATGTACCCATGGCCATTCTG	LINE	L1	L1HS	taattatgacaaatgcttttgactatagagtaaattagattaaaattttccaccagaatattcctttaatattcagttgaagcaaggacattgagggaaa<br>attttaataggaaagaaaaaagttccgaatatgtatttccacatgaaaactgatctggttagagcaaaggactgataataagcatagaaaatcggcctga<br>aaatgtgaaaaggaatttagaaaggataagtagatgaaaagtaatgataaactttgcctgcttcattattttgcctatgacaggtcatcatcaattatgt<br>acccatggccattctgacaaacgacaggtaagtttcactaagcaccaacccatctgcagggtaagaaaaataactaagttaacttcaaatt<font color="green"><u>TATTTTCTT<br></u></font><font color="red">CCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACA<br>AAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATG<br>GAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTT<br>AATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAG<br>ATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACC<br>AAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAA<br>CCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAA<br>ACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACT<br>GGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGA<br>GGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAAC<br>TAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGC<br>GGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTAT<br>GCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAAC<br>ACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAG<br>GGGGGAGGGATAGCATTGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TATTTTCTT</u></font>gaaaaagtgtctcagttttcccaagaa<br>gcctaatagatggggctaccacccacctcttatggatagtgggaagtctgttgtaaatcatgactcagttgcttatgagctcactgtctcttttcccttt<br>aggtgaaaggaggttactaaacactttccttgacctgcccatcctcctgccctaggaccaagccacaagcatattagaaaacagaaaacaagccgaggaa<br>agtctttctgggtttttagcatgtgcttccctctgaaattatatttttcaaatataaatttagaataagagaaaataatggaagtccatgttttaattgc<br>aatgttgtctcaatccattcccctacagaatacactcaagtaatccatggtatttcatggtatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1728	156	NA	intergenic	
0	chr14	36674760	36674761	2000417	0	+	1104685635796	AAGTTATGGCACAGACAGAAAGAA 	AAGGGAGACAGAAGCGAGTC	LINE	L1	L1HS	gtctgacccagtctaatacttttacattctttgatttataagttgattaaagtttttgccaattcaggaggaaaaaatcacaagagtagaatgttattca<br>aattgtttggtattaggtgacttggtatgttagcgctactgaagcaaatatatagacaagactttggttgattggcaggattttgactagattaatcaga<br>catttgagcattatgaaaaacaatcatttttctttaacaattattgccttttaaatgaataagctaatatgaaagtgacaagtgagacctcactaggggc<br>tgagatagctaacataaatatgtaagttatggtacagacagaaagaatgacaaaaatttacacatttaaaaacattttatcaat<font color="green"><u>AAGAATTTCCTGTTTA<br></u></font><font color="red">AGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGG<br>GTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAACA<br>TTAAAAAAAAAATGCAAAAAAGAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTCCTGTTTA</u></font>ataagttttataaaacagtgaagtatgtggattaaagagactcgct<br>tctgtctcccttacttcttgatgtatttttttcctctttctttctccctctctcttttttatctctgtaattgctggcactttaatgtagaaaataggct<br>cattcgtcttgtcttctaatgagctttatacagtataagaaaacgtaaagtctggaaaggggtgttaatgttggatcctaagagccccagcatttgtacg<br>tttgactctatcatcttttatcatgtagcaaaagacataagccaacaaagcgtgctatctatagaaaatacttgtaactgttttgttaacccaagagttg<br>acccctttacatgtaatttcaggctcagaatcagatca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	388	136	NA	intergenic	
0	chr14	94874620	94874621	2000418	0	+	1104685285024	NA	NA	LINE	L1	L1HS	aagcaatttttatgccttatattattgagataccttatattattgctctgagctcaagatctttaccaatttgattggagagcttgacatttataaatat<br>ttatctagttttttcctttgagaatatcagtccatcaattaactgttccatcacccaaagattgttagccaggcaaatctaaatttacatttctaaaagg<br>gatgactcaggagtctaggctgttggttaccatggaaccactgtaatttgtaaagtcattaatttaaaagccctttaagagtttttagaaaatgttggct<br>gggatgtcataagcagtgagtttagcactagcaaaaaaaagtcagaaaattaaaaataggcagaaaaaagagatagagatagacaactta<font color="green"><u>TAGAGTCTTC<br></u></font><font color="red">TGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATC<br>ATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGG<br>ATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCA<br>TCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGG<br>GAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCG<br>CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATG</font><font color="green"><u>TAGAGTCTTC</u></font>atgttaactctatagttggctgctgtttctatttagttttaagaaaagcaggctt<br>ggggagttgaaatgattccctttaatggccatatattatttttggtgtaatttttccaataattaaaaaatgtacatgagaatggaccataaattttgaa<br>tatgtagccagctggagtctcagaaattttggcatactttagaattttgagaatcccattttatctgttattcatctcttgagagcaaagaaaatcatac<br>gaatcctattagggaatgtcatgaatttgaaccagtgttttaaatagtggcaattgctctaatggcttttaattagctatcctgctcacatcatttagaa<br>tgtttattattttgctctcagaaggtcttcagaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	100931162	100931163	2000419	0	-	1104685149281	AACTTGAGCGGAGAGGCATA	TGCAGATGGAACATTTGTGG	LINE	L1	L1HS	gtaaataggggtttttaaaaatggtttgctggttgtccccaaggcatttgctgagcatttttttcttttcctttgtgctttgcaatgccactcttaaatt<br>attttgtgtctcttgtctctttctggacttcccattctgtttcaccgaagtacttccaataccaaattgttttaattagtacagccttataataggtttt<br>cttatggttagatcaataatccgtttttcctcttgtctttcccaatattactggcccattcaacatctttatttgatttccaatatttattttattccaa<br>gctagaaactggatgaattctagtttttgttttttgttaggctcctctcaaaatcccaatggtgtgctattttaagattgct<font color="green"><u>TCTAAGTGTATAAATTTA<br></u></font><font color="red">ATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTT<br>TCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCT<br>TTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTT<br>GTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTG<br>TAGTATACAGTAACCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCAT<br>CTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAG<br>ACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGA<br>TACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGT<br>GGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGG<br>TATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCC<br>AAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAG<br>GGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAAT<br>GAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAAATAAAAAAAAAAA</font><font color="green"><u>TCTAAGTGTATAAATTTA</u></font>agaacggacaatttatcatattgagtattcccatccaagagcgagttgtcctt<br>tcagttaaattctttatctcttagtaaaatagggaattttatttgtatacaccctgaacatttcctttaacatttcacggaggtaattttctctttgatt<br>attattgtgaataaaatctttacttccttttattttttttaatacttagaaaagctattgatttttgtatgatagctgtgagatatgcctctccgctcaa<br>gtttctaataggttttcagcaattttggggttttctatgtatagaaagtcatcatttacagattatttgttactatatatgatagtaataaatcaaaata<br>ctttattactatgtatgatagtaataaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	2478	1033	NA	intergenic	
0	chr16	6793826	6793827	2000420	0	+	1104685243766	CAAAGCAACACCCTGTCTCA 	ACATGCGAACACACCACTTG	LINE	L1	L1HS	gcacattttaaatataaagacacaaatatgttgataaggatgaatggtagtgcacacctgtagtcccagcactttgggaggccaaggcaggaggatgcct<br>tgagcccaggagtttgagaccaacctgagcaacatgacaagaccccaactgtacaaaaaatttaaaaattgaagtgagcatggtggtgcatgtctgtagt<br>cccagctacgtgggaggctgaggtgtcagtatcacttgagcctgggaggctgaggctgcactgggctgtcatcacaccactgtattccagcctgcactcc<br>actgcactcagggcaaagcaacaccctgtctcaaaaggaaagaaggaagaaaaataaataaataaataaatgttcattattttttctcatgtgtt<font color="green"><u>NNNNN<br></u></font><font color="red">TTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTCAGAAATAA<br>TGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCT<br>AGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATA<br>AAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAA<br>TTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGC<br>AACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAG<br>GACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAA<br>CCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTT<br>ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTT<br>GGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAG</font><font color="green"><u>NNNNN</u></font>atcatgttcatttatttctgattatttgtaacacattttcctata<br>cattaattaaggatattaaccattcatctatgatatatacagtaaatgattttccagtttttcatttgtggtttaattttgtcaatgttatcttttcaat<br>atataaagcaagtggtgtgttcgcatgtttaaataaagtgtatttctttcctttaaaaagtaataaagatacagaatgtgatcactaatctaaagaatac<br>tgaagtaactatactgatatcacacaaatagattctagagaaaaatacatcagggataaagaaggtaatttcacaatggaaaaggtgacttaatcaagaa<br>gacattaaatatttatgcacctcaactttaaaatacatgaaacaaaactg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1715	270	NA	intron:A2BP1:NM:001142333:3/15	
0	chr17	4314993	4314994	2000421	0	-	1104685547987	GTGTGATCATGGCTCACTGC 	GCACACATCAAAGGTGGAAA	LINE	L1	L1HS	cactttgggaggccgaggtgggtggatcacttgaggtctggagttcaagaccagcctgggcaacatggcaaaaccctgtctctactaaaaatacaacagt<br>taggccaggcgcggtggctcacgcctgtcatcccagcactttgggaggccaaggtgggtggatcacgaggtcaagagttagagaccagcctggccaatat<br>ggtgaaaccccgtctctactaaaaaaatacaaaaattagctgggcatggtggcgcacgcctgcaatcccagctactcgggaggctgaggcaggagaatcg<br>cttgaacctgggaggcggagggtgcaatgagctgagatcgtgccactgcactccagcctgggcaacacagagagattctgtctcaaa<font color="green"><u>AATAATAATAATA<br></u></font><font color="red">CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAA<br>AAAAAAAAAAAGAAAAAAAAAAAAATTAATAGAAAAAATAATAATAATAATA</font><font color="green"><u>AATAATAATAATA</u></font>taatacaaaaattaaccaggtgtggtggcaggtgc<br>ctgtaatcccagctactcaggaggctgatatgggagtattgcttgagcccaggaggtcaagactgcagtgagccatgatcacactactgcactccagcca<br>ggtgacagagtgagaccctgtctcaaaaataaataaaaataaattagctgaccatggtggtacacacctgtagtcccagcttctcgggagactgatatgg<br>gagaatcccttgagcccaggaggttgttgaggctgcagtgagtgagctatgacactgggtgacaaagcaagatcctatctcaaaaaaaaaaaaaaaaagt<br>ggaagcacctcgtacgcctaactgaagaatagataaacaaattgaggtgctt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	848	585	NA	intergenic	
0	chr18	59579975	59579976	2000422	0	+	1104685561652	TTTGCTTCAAGGGAGCAAGT 	CAGTATCTCCCCGCTTCTCA	LINE	L1	L1HS	cctttcctctcgccaatcttaacctctctggctagggtaagaagaggaaagcacaatgaagccattgctcagagaagccactgttctgcctttgttctcc<br>cttcttcctaactagcttcagaataaggctgtctcctaccaagcaaaatcagaggtccttgatgtgagccttggaattcaaacccagtgcaagctctttc<br>agatcacagatctcatcacatgtttactgcctacctcaagtagattctcaatgaatgcttaaagtttcgaattttaagaattcaaaccttttgcttcaag<br>ggagcaagtaatgaggtcctggtatgtgaaggtgtggccaacacttctaaatacagtgcaggtaaggggagagccagcactgcct<font color="green"><u>AAAGAAATACCAGCA<br></u></font><font color="red">AAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTA<br>GATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAT<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATACCAGCA</u></font>ttgagagaagattttctaaggtcaaatatgtttatatactgagaagcggggagatactgtaaag<br>ttacgaaagaagcctaggaatatttgaccaatatatttaatttaatacctgtctgtattcatttaagaatttacatttacagcagggcacggtggctcat<br>gcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggaattcgacaccagtgtggccaacatggcaaaaacccctctctact<br>aaaaatacaaaaaaattagccgggtgtggtggtgggtgtctgtaatcccagctactcgggaggctgaggccggaggattgcttgaatccaggaggtggag<br>attgcattgagccaagatcat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	406	171	NA	intergenic	
0	chr2	7050595	7050596	2000423	0	+	1104685199098	GAAAGAGAGAGAGAGAGGAGTTTTT	CAGAATCTTGGATGCCACCT	LINE	L1	L1HS	agatggggaaaggaaaaagaggaatttgcattctttcattggactattacattctttcatgtctaatgccaaacatacaaatatgataatataataagag<br>agtaacaaaagtggtgtgagcacagctcagcagaaagattggctaacccaggggagtgacagaaatgttactagaggtgtcagtggtgcactggagttta<br>aaatagtaggagaagttttccaggccgtcaaggtgtggggatttgatgagagtgtttgcgtttgttattgttgttgatggtggtggcgatgtgtgtgtgt<br>gtgtgtgtgtgtgtagaaagagagagagagaggagtttttaagtactgtatgtattttaaggagattgaataatctaaggtgaggagcattta<font color="green"><u>AATAATA<br></u></font><font color="red">AACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAA<br>AAAAAATAAT</font><font color="green"><u>AATAATA</u></font>gcagaataaaagttaaatacttagaaacatacagcaatgaaacaaaatgacctctaaagggccttttaagtatgtttccatcc<br>agaaagggtctctatagcccctatttttattttttattcccattatcccccagaactttccattcttaggtggcatccaagattctgtccattcctgctc<br>aagcccacctgccacctttatccataacagataaacctcctggtcctaccaagccagacaatctattgtcaggaaaatgttttatgattctcttcttctg<br>caatcttgctggagctcactttccccatcttactgtctcaggtcaggttccctgggaaacagactctgagatggaggttggcggttaagagatgcttagg<br>aagggttcct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	371	256	NA	intergenic	
0	chr2	147020927	147020928	2000424	0	+	1104685264933	CAGAAATCTGAGGGGACCTG	CTTGCCATCTTCCCCATAAG	LINE	L1	L1HS	ggatcacgagaagcaaagaagacataaaaagctgattaaatgcacaaatatttatatttttggatatattaggatcactgatgggattgtttcttttggt<br>gtctatatttgaggttgatataaagacttacttttacataaagcttgctacatactctcctaagaactttatatctattaacccgtgaaatctatcccag<br>tgatcttgttttattatcctcatttcacagacgaagaaactgaggaactaggtggtcaagttagatttcacagctaggctgtctagccagaattcataca<br>gtccctgctgtgtaattgtagcaaagtccttttgattatttcagaaatctgaggggacctgacagctcaaaatactatctgcatttttatttactatt<font color="green"><u>CT<br></u></font><font color="red">CAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCA<br>AAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAA<br>TGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAA<br>TCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGTGCAA<br>GGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACT<br>ACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAAC<br>AAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACAT<br>GAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCA<br>GGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGC<br>GATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATAACCAAATGAGTATAAATCATGCTGCTATAAAGACAC<br>ATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCAC<br>ATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTAT<br>CGCAAAAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGG<br>ACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGT<br>ATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAATAAAAAATAAAAAATAAAAATAAAAAGAAAAAAAAA<br>AAAAGAAAAAAAAAAAAAAAA</font><font color="green"><u>CT</u></font>aatacttctgtatattaaaacaatattacaatacataaaaggcaatatatgtttattcaaccaaagttattgattat<br>cttttatgtaccatattttccactagctaattaaaaaactgaacacatatagagttcaaaggcttacttatggggaagatggcaagttttatttatgggg<br>tatataaaatcattgcatgagacatatactaacaaattattcattgtttattagaaattcaaatttacccacatcacctttatttttatctgctaaatct<br>ggcaaccctggaataaacagatgtgtgacccttggagaatgtgtggaaagacattccaaacggaatgaatgagagaaaaccctcgtgcataaaagtgtag<br>gtatatattgaaatgcttatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1744	223	NA	intergenic	
0	chr2	181000555	181000556	2000425	0	+	1104685649485	GGATTTCTGATCCGAAGGAA 	GAAACAGGGGCATGTGTTTTA	LINE	L1	L1HS	agcctcccgagtagctggtactacaagcatgtgctgccacaccctgctaatttttgttttgttttgtagaaacagggtttctccatgttgcccaggcttg<br>tctcaaactcctgagctcaagcaatccgccagcctcagcctcccaaagtgctgagattacaggtgtgagccactgtgcctggctcaccaagtaaattttt<br>aaaggatatattaatgttaaagtaaaaagtattctgtaagagattgggaactattttaaaaagagagagattcttactgtagtgaaaatttgtatgtagt<br>tccccaaagaataaaatcagcaaaattcccagatgtgttttcagggttctttgaggatttctgatccgaaggaattagaaaggt<font color="green"><u>AGAAAATATAGGTCTC<br></u></font><font color="red">CAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGG<br>GCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGT<br>GATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTG<br>AAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGC<br>ATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGAT<br>TCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTTTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGAT<br>TTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAATCA<br>TGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACAC<br>TATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCAGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTG<br>GGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGCTAGCCATATGTAGAAAGCT<br>GAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAAC<br>CTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAA<br>TTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAA<br>AGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTC<br>TCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATC<br>TCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTG<br>TAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATAC<br>CCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTC<br>CAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATG<br>GATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCA<br>CATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACA<br>CATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AGAAAATATAGGTCTC</u></font>ttctttaaaaaagaaaaaaaaatatgcacaattaactctaaaatgttactagatgttacaatctcatttgataat<br>aatatcaaaataaaaataaaacacatgcccctgtttctaagcaaaacaatgacaatgttttttatattaaacgacttatatggcttatgctatatagaga<br>gtttttgctaatggaattaaatgaatcatattaaatacttgttaatgaataaatgaatttatcaaataacctaatagatttttccctttttactcccaac<br>atgtgctatatataaggaaactgaaattcccttgcaattttactgagcttgatttttaatagaatgttgagtgtacatcagcattcctggagcagggcaa<br>ggcagtgag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2382	159	NA	intergenic	
0	chr3	82710137	82710138	2000426	0	-	1104685296398	NA	NA	LINE	L1	L1PA2	aatactagcaaatcgaatccagcagcacatcgaaaagcttatccaccacaatcaagttggcttcatccctaggatgcaaggctggttcaaatataaacat<br>aaccaatgacaaaaaccacatgattatcttaatagatgcagaaaaggcctttgataaaattcaacatcttttcatgctaaaaattctcaataaactaggt<br>attgttggaacatatctcaaaataatgagagctatttatgacaaatccatagccaatatcacactgaatgggcaaaagctggaagcactccttttgaaaa<br>ccagcacaagacaaggatgccctctctcaccactcctatttaaaatagtattggaagttctggccagggaaatcaggcaggag<font color="green"><u>AAAGAAATAAAGCGTAT<br></u></font><font color="red">ATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCT<br>ACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCCACAACTATC<br>TGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAA<br>ACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTA<br>GGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTA<br>AACTAAAGAGCTTCTGCACCGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGG<br>GCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCA<br>AAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCA<br>CACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAA<br>ACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCA<br>AATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAA<br>CAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGAT<br>GAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACAT<br>GGACACAGGCAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGGAGATATATCTAATGCTAGATGACACGT<br>TAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAATA<br>ATTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATAAAGCGTAT</u></font>cacatagcaagagaggaagtcaaattgtctctgtttgcagactacatga<br>ttgtatatttagaaagccccatcttttcagccccaaaacttcttaatctgataagcaacttcaacaaagtctcaggatacaaaaatcaatgtgcaaaaat<br>cacaagcattcctgtacactagcaatggacaagcaaagagacaaatcatgaataaactcccattcacaattgctacaaagagaataaaatacctaggaat<br>acaacttacaagggatgtaaaggacttcttcaaggagaactacaaaccactgctcaaggaaataaaagaggacacaaccaaatggaaaaacattccatgc<br>tagtggacaggaagaatcaacatcatgaaaatgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	176091334	176091335	2000427	0	+	1104685598709	TGACACAGGGAAATGCTTCA 	CTGCTTCCATGAAAGTGAGC	LINE	L1	L1HS	cagaaatggaagaaagtatatgcaaactactcatccaacaagggacgaatatccagaatacacaaagaactcaagcatcttaacagaaaaaaaaagccaa<br>caatctgattaaaaaatgggtaaatgatctgagcagacatttctcaaaagaagacatataagtggccagccaaatatctgaaagagaagttcaacatcac<br>taatcatcagggaaatgcaaatcaaaaccacaatgaggtatcatctcactccagttaggatggctattatcagaaaggcaatatcaaatgctggtgagga<br>tgcagagaaaagggaacccttaccaccgttggtgggaatgcaaactagtacagccactatggagaacagtatagaggtcccttt<font color="green"><u>TCTATTGGTAGTTTTT<br></u></font><font color="red">GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCTATTGGTAGTTTTT</u></font>ttaccatatgatccagcaatcccactactggaaatttatctg<br>aaaaaaggaattcattgtatcagacagacatttggacccccatgtttattgcagcagtattcacaatagccaagatatggaattaacctaggtgtccaaa<br>aacagatgaatggataaagaaaatgtgttatatatatacacaaaagaatactactcagctataaaaagaatgaagtcctgtcgttcacagcaacatggat<br>ggaactagaggacattatgctaagttgaataagccagaaacagaaagttaaacactgaatgttctcactcatgtgaaagctaaaaatgttgacctaatag<br>aagtgaaaagtagaacagagggtgctagaatctgggactgat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1542	1386	NA	intergenic	
0	chr4	47007785	47007786	2000428	0	-	1104685080890	CGTCTCCCTCTGCAACTTCT 	GGCTGCAAATAAGCCAGAGT	LINE	L1	L1HS	cagggacagagaaaaacacatttttcgttataattctgtcggaaatgatctaatggaagggattccattgtcaaagaatgtcaaaatgagtcagaaaaat<br>agtgtctgatttttaccaagcaaaataaaacaaaagaaattattgcttctttattagaagatgtgaaaaaaaaaagaataacaaaagcctcctcaaatca<br>gatacttccaagtttttaagtaaataaaaaaataagtacaggaagaaatgaaagaagggaggaaagaagacatttgtattcataagacaaagattaaaat<br>gctgaaagtttggctgcaaataagccagagtagaggacaaattaaatgaaggcacagttttgctaagccccatatgttacaagttgactctttca<font color="green"><u>NNNNN<br></u></font><font color="red">CCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATCC<br>TTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATT<br>GAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCT<br>AATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGA<br>GTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>attgggtagccattgcagaagcactggttcctaattttagagaagttgcagaggga<br>gacgtaaagttctctgtgattgacaaaaggacatttttagtccttggatcttcaggaggcttaaaaaaagctgactataagttaagagagactgccgatg<br>gtttttaccttatgactgaaatgtttgcattgctttactactttctcttttagcatcaaatggatccttatcagatactgtgctcaaaccacaggtttgc<br>tgcattttcagcatacactgacatttaaaatctcactggatggtcacttcctcactaagaacagtttttgtttgtttgtttgtttgtttgagacggagtc<br>ccactctgtcgcccatgctggagtgcgatggctggatct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	593	159	NA	intergenic	
0	chr4	58126677	58126678	2000429	0	-	1104685021931	NA	NA	LINE	L1	L1HS	atatgctaaatatatatacacccaacacaggagcacccagattcaaaaagcaagttctaagagaccttcaaagagacttagactcccgcataataatagt<br>gggagactttaacagcccactgacaatcttagacagatcactgagacagaaaattaacaaagatattcaagacctgaactcagccctagaccaaatggac<br>ctgatagatatctagagatctcctcaccccaaaacaacagaatatactttctttgcatcaccacattgcacttactctaaaattgatcacataatcaacg<br>gtaaaattttcctcagcaaatgcaaaagaattgtaatcataacagtctctcagaccacagcataaccaaattaggactcaagatt<font color="green"><u>AAGAAGTTTACTCAA<br></u></font><font color="red">CAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTT<br>CATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATC<br>AGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTT<br>ACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCGAAAAATACATGAAGAA<br>ATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAAC<br>AACAGATGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCC<br>TCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCAC<br>ACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATAC<br>ACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAG<br>AACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTG<br>GTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACAT<br>ATGTAACGAACCTGCACGTTGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAACATTAAAAAAAAAAAAAAAAACATAAAAAAATAAAA<br>AATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTTTACTCAA</u></font>accatacaattacatgtaaattgaataacttgctcctgaatgacttttgggtaaataatgaaatta<br>gggcagaaatcaagaagttctttgaaaccagtgagaacaaagagacaacataccagaatctctgggacgcagattaggcagtgttaagagggaaatttat<br>agcactaaacatccacatcaaaaaattagaaagatctcaagttagcaacctaacatcacaactaaaagaactagagaaccaagaacaaataaatcccaaa<br>gctagcagaagacaataaataaccaaaatcagagcagaactgaaggagacagagacatgaaaaatcattcaaaaaaatcaacaaatccaggagctggttt<br>tttgaaaaaattaataaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	29321865	29321866	2000430	0	+	1104685317615	TCCCTAATTCTTTTTCCTGCTG 	ACCGGCACAAAGGTGTTAAG	LINE	L1	L1HS	tttaagagatgagtcatttttctgttgctgctttcaagattttctctttatttttagctttcaagatttttactgtaaatatgtccagatgtagctctgt<br>ttgaatttatcctacttgaagtttgtcatgatacttatttgtatagattagtatttttcctcatattttggggtttttcaggcattatttatttaaataa<br>tttcctgtccttttatctctctactttcttttatattctctcattaaagctatatttttgtgcttgatggtttccatgatttctcttagactctattttt<br>cttgttttttgttttctctcttcttcatattgcgtaatctctattactctatcttcatgttccctaattccttttcctgctgagtcaaa<font color="green"><u>CTGTTGATCCT<br></u></font><font color="red">TGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGCAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAG<br>CCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATT<br>ATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGT<br>CAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTC<br>CAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCT<br>ACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTG<br>TAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATTTGGCTCTAGAAGAAAACCTAGGCATTACCATTCAG<br>GACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCT<br>GCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAAT<br>CTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTAT<br>GCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGG<br>CAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATT<br>GTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCA<br>TGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGA<br>TTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCAT<br>CATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGG<br>AATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGC<br>ACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>CTGTTGATCCT</u></font>tt<br>ccagcaattttttaaatccagttattgtattttccagcttcagaatttctattctgagttctttgtgtaatttgtatctctttacttatgttttctattt<br>agtgagatgttgtcactacaccttatttaaatcttcacacactgatttcctttatcccttttaggaaaaagaaatatatatgtttcttttaagtctttgt<br>gtactaaatcttaatctcggccccttcacaggtgtttttattgcctacttttctttctgtgtgtggatcacactttcctgtgttcttttacctgtctcaa<br>cgttttgttgaaattggatattttagatcacatattgaagcaattctcgatactgatacccactatgggagggaggggtgctatgga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2691	895	NA	intergenic	
0	chr4	18162689	18162690	2000431	0	+	1104685314720	TCTTCAGCCAAGTCCTCTGC	TGGGGAGCCTTACCCTAACT	LINE	L1	L1HS	tgcctctatcatccttaaatctcttctttttctttcattttgtttttgcctctagaaggaatttcctcccatcaaaaaggcttttttttttttttttttc<br>tttttgagatggagttttgctctctcacccaggctggagtgcagtggcacaatctcagctcactgcaaccaccacctcccaagttcaagcaattctccca<br>tctcagcttcccgagtagctgggattacaagtgcatgccaccatgcccggctaatttttgtatttttagtagagacagggtttcactatgttggccaagc<br>tggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtattgggattacaggtgtgagccactgtgcccgacccaa<font color="green"><u>AAGGCTTTTC<br></u></font><font color="red">CTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCG<br>CTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCC<br>CTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATG<br>GTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC<br>AGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGAGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGA<br>TTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAAT<br>GGTTGAACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGC<br>AAATCAATAAAAGTAATCCAGCATATAAATAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAAC<br>CCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAA<br>TGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGG<br>GCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACC<br>CCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACAC<br>CAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTG<br>AAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCA<br>ATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG</font><font color="green"><u>AAGGCTTTTC<br></u></font>aactttagtattctcatattcccatgccttttattcataactcatcccacatctggttcgttccaagaaaaataccaaattcagttagggtaaggctccc<br>caattatctgagaagaggccaagctactataataaggagactcctaactacagaggctcatggaagagaggtttatttctcttaattaatggttcaaagg<br>gaggcagtagtccaagacaggaagatcactctgcctcacgagggtcagctgggaatccagtctgggtcctttgatcatgttgtcctgctattgactaggg<br>tgttgtctgcatttttgacagtggtgttctatgaccacatttatgttctagtctataggaagaggaaagcagagaagtagaggaaaagtg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2018	522	NA	intergenic	
0	chr4	147225292	147225293	2000432	0	+	1104685730555	ACTCCAATACTGTGGCATCCT 	CATTCTTATTCAATTGGACTGATAGG	LINE	L1	L1HS 	ggaatttggtaataatgattatgatgatagaagctacagagcacttacctgtgttaggttctatgacaagaagtttacaggcatgcatatttcagttaat<br>ctttacaacaaccctttacgatagatattgtcataatatttaataaattatgaacctagagctagggagattaaataacttgcccatagtaacactgcaa<br>ataaaaggcagaaataagtctagaatctagttgctcttaatgtactgctttcctaagacttgttcactttagttgtgcattaaattctatactccaatac<br>tgtggcatcctatgatttcatagaaaacaaaaaaatccacttgttttacaatttgtatgcttatatgcttactactaacttgttataagaagttaa<font color="green"><u>ATAG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCCGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGT<br>CCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCAACAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTATGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGACAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGTCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGACAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATGAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATTAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAAC</font><font color="green"><u>ATAG<br></u></font>...aattcctatcagtccaattgaataagaatgacaaagtaaaccctaaatattctaagataaactttaagagataataggattaaattgtttatcaatt<br>acatggtcacaaacataactgctgttggaggagtctataaagacaccaaccaaagacagatgcttgttcccaacaatggtcataaacacggagaccttat<br>caaaagttgcagaataaggtaaagacttgctagatgtctgttgttggtgctataaatttccctctacacactgctttgaatgcatcccagagattctggt<br>atgttgtgtctttgttctcgttggtttcaaagaacatctttatttctgccttcatttcattatgtacccagtagtcattcaggagcaggttgttca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	6190	142	NA	intron:SLC10A7:NM:001029998:7/12	
0	chr4	127596192	127596209	2000433	0	+	1104685448920	ACTGGCCATCAGAGAAATGC 	GAAAATGGAACCACTCAAGAGC	LINE	L1	L1HS	taggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaacaatggcaacaaaagccaaaatagacaaatgggatctaatt<br>aaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttcaatctacccatctgacaaagggctaa<br>tatccagaatctactaagaactcaaacaaatttacaagaaaaaatcaaacaaccccatcaaaaagtgggcaaaggatatgaacagacgcttttcagtata<br>agacatttgtgcgcccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctca<font color="green"><u>NNNNN<br></u></font><font color="red">GCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGAT<br>TAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATC<br>ATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGA<br>ATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCA<br>CCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAATAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>NNNNN</u></font>gtcaggaaacaacaggtgctgaagaggatgtggagaaataggaacacttttacacgttggtgggagcgtaaactagttcaactattg<br>tggaagacagtgtggccgattcctcaaggacctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaagattataaatca<br>ttctactataaagacatatacacacgtatgtttattgtggcactattcacaagtcttggaaccaacccacatgtccatcaatgatagactggattaagaa<br>aatgtggcacatatacaccatggaatactatgcagccataaaaatggatgagttcatgtcccttgcagcgacatggatgaagctggaaaccatcattctg<br>agcaaact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1328	838	NA	intergenic	
0	chr5	33633348	33633349	2000434	0	+	1104685699696	TGTGCAAATGAAAACCTGCT 	CCTGTGTTGTGGAAACAGGA	LINE	L1	L1HS	aggaatcatctgtttcaaagctgctgggaagagttgggaccagagcatgttcattgcggcaacggaatgtttattcagagagaaacggacagattcacta<br>agtcgcatttacataatggactgctatgcagtcactaaaaggaatgaggtaaaccgtgatgccatgatctactcagtgcatcaagttgcagaactggcaa<br>attatggttctatttgtgtgcaaatgaaaacctgctgttagcatggttatcttggaggaatacattaaatgcagtgggataataggaattcatttctgtt<br>tcattctattatatgcacttgcatttttatcagacacatacattccttttaaaattaataagtcttggccctcaaataggaaaactggaaaagtc<font color="green"><u>NNNNN<br></u></font><font color="red">TTTTTTTTTTTCTTTTTTTTATTTATTTATTTATTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTAT<br>ACATGTGCCATGCTGGTGCACTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGT<br>CCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCG<br>ATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATAT<br>GTGCCACATTTTCTTAATCCAGTAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGG<br>AAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGG<br>AGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTT<br>TGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAA<br>GATTGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAG<br>AAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGA<br>GAATGGAACCAAGTTGGAGAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGA<br>ACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAG<br>AGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAA<br>CATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATG<br>CTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATG<br>CCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAAC<br>AATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAG<br>GAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAA<br>TCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCT<br>AACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATA<br>ATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCGCCAAGCAG<br>ACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGG<br>AAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTC<br>ACTCAAAGCCGCTCAACTCCATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACAAAATGAAGGCAGAAATAAAGATCTTCTTTGAAA<br>CCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCA<br>GGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAA<br>ATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGAC<br>CGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAAT<br>TACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAAC<br>CAGGAAGAAGTTGAATCTCTGAATAGACCAATAAGAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGAT<br>TCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATT<br>TTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATC<br>CTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATTCCTGGGATGCAAGGCTGGTTCAATA<br>TACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAA<br>CAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATAC<br>TGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGC<br>CAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTGTCTGTTTGCAGACGACATGATTGTTTATCTAGAA<br>ACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCTAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATA<br>CACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGAT<br>GTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAA<br></font><font color="green"><u>NNNNN</u></font>ccagtgatattcatgacacatcaccataaagagagtctctaatttcaaaacttcccttcatcctgtttccacaacacaggactagtacattcttc<br>aaggctagacaggttaactgaagtacactgcctacaagaaacacacatgtgtgttgactataagtatagtggtttatggagtcttagaaattatccagga<br>aataacatttataataacaacaatgacagcatacagatcctctgctgcaactctcccagagctcccacgaccatgacctataggtgtgcctcaggcctat<br>gtttgaaagcagtcatcctaaatggaaggttcagtgctattcaaggcttttataaggctgagcctgaagtcctcctctgtcccctccttctctggccttt<br>	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	5498	267	NA	intron:ADAMTS12:NM:030955:12/24	
0	chr5	125040046	125040047	2000435	0	+	1104685719313	AACATTCTGGCCTTTTGTGG 	TGTCTATGTTCTCTTTTAGTTCGATGA	LINE	L1	L1HS	caagagattataggcagaataatatgatagaatatataaggcttcaagaagtagggtgagactttttgaaaaattaagagatgtaaagacagccctgtaa<br>aagggacaattgagaaaaagtacacacatggcatcagaaaatttgcatgcccagaaaaggcttgagaagactttaagtctccatgttagactaattaatt<br>aagatcttcctccctttccatagaaccagtctgcaaaaactgggtgagtccctctcaacacccacaaagccccaattttaaacaaaagatcacaggaata<br>ccaggaaacatggaaacatggcccattaaaggaaacaaaataaatctataaatacaaccctaacgaaacacaggactctaacttgacaaattatt<font color="green"><u>TTTTA<br></u></font><font color="red">GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAAT</font><font color="green"><u>TTTTA</u></font>gattgtcctaaatatactcatcgaactaaaagagaa<br>catagacaactaagcaaaattagaaaaacaatttataaatgaaataggaagatcaacaaagagagaaattatgaaaaagatccaaacaggcaatttgaaa<br>ctaaaaaatacaataactgaatttaaaattgtacttagaaggattcaactttgggcttaattaggcagaagaatcaatggacttgaggaaaaattatttg<br>aaattatcaagtccaaggagcaaaataacaataataaagaatataaacagagcctgagcgacttatggaacactgtcaagcagaccaatagatatattac<br>aagaattccagagagagaagacagaaagatagaggcagagagtttatttgataaaataa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1476	614	NA	intergenic	
0	chr5	137014795	137014796	2000436	0	-	1104685716642	ACCAGGGACAATTCCTACCC 	AGAAAGGGAATGGAGGGAGA	LINE	L1	L1HS	tctccggctgtcagctttttggtcagccaacgatacatgtgggaaggccagatgtggctctgggccagagatgttggtgctggtttgcaggactctcctg<br>agaaccgtgtggtcctgctgagctcagctgtggctggtccagagagcctcaatgtcctgtgcttgctcatggtgtggtggcttgtgtggtgactgctttt<br>tctatctgctgtttcttgggtgttaccaattgacaggggactgtggtccaaagacttctgggatcagaaagggaatggagggagaatccagtactttccc<br>agcttccagcccaagaataaattcttaccatccaaagaagattgctctcttgcttttattttaagatctttagcaatgaacac<font color="green"><u>GATAGTACTATTTTTTA<br></u></font><font color="red">CGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTCTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACTGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAATGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCGATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGC</font><font color="green"><u>GATAGTACTATTTTTTA<br></u></font>atctagtcttaaatatttccatagttaggaaggttttttgaatgtttaacttaaaaactaaaggctttttttgttttgatatacagagaagcaaagacca<br>gcttcttaccatgttgatgttgacagttggtttccttcgtaaaaaaactgactttcagatttgtcttgttatgtgtaaatattcctgagtttcaagatgg<br>acaacctttagttgtgaccatagtaatatcaataggctggtgtagagcaagtggggagccctttttgtccagtggaagatggaaaatattgtttataact<br>caatatttgagagtaaactgttaacgtttagggaatctggatgaaggtagaaatttgtatgagaattatttgggtctgaaatt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	6910	861	NA	intron:KLHL3:NM:017415:5/15	
0	chr5	109480273	109480274	2000437	0	-	1104685722750	CATGGTCAAAACCCAAGAAGA 	CCAAAACCTTCCTTTTAATTGC	LINE	L1	L1HS 	ttgaagttgtgctggattttgaattctagattttgaattattttaaccccttaaagatatttttcttcttctggtttccctttttctgttgaagtctgct<br>gacattttgattgatgcttctttttagataaactgtctttattctggctgctttttctttagttttagcagttttactgtgatacgtcttgaatctgtaa<br>cctacagtctttcaattccttatggaaaatcccattattattgctcctgcccctaatcactgtcttctccttctggaaccccaaaaagtgtaaacttata<br>ttacaactattttatacatcactttattcactattctctgtgttttccttcttttgttgctgcatgctttgatctggagatttccttt<font color="green"><u>GCAGGTCATTTC<br></u></font><font color="red">CGATGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAA<br>CAGAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTA</font><font color="green"><u>GCAGGTCATTTC<br></u></font>tgcaatttcttattcttcattcagctttgtatagtatattttaatacatccattaatccactacttgtattgttttcattctctttcaaaactctcattt<br>ttaaattatttccttgaacatttaagcagagttattttaaagtctatattttattgcttcttgacttgtatcagctatgattctgggactattgtatgtc<br>attcttcttgggttttgaccatgtcttctttttctctagcatatttgaacattttctgttgaatgcaagacattttaatctgacaaaggcctaatatcca<br>gaatctacaaagaacccaaacaaacttacaagaaaaaaacaaacaatcgcatcaacaggtgagccaaggatatgaacacttctcaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	6806	726	NA	intergenic	
0	chr5	84239615	84239672	2000438	0	-	1104685646259	AGTTTTGTGATGTCACCCTCAA 	TAACTGGAAGACCAAAACACTTT	LINE	L1	L1HS	ccaccaaaaaaagtttaagataactatatgaagtactagatatattaattagcttaattatgataatcacaatgtatacatatattgaaacataatgtaa<br>actttaaatacacacacagattttaatggtcaattatacctcaataaagctggggaaaatacataaatatttgtgcaacaaatatgcaatcacaatcttt<br>ataataccaaataaaaagtagaagagatgtaaggaaacatagaaacacaataataactggaagaccaaaacacttttcatagagaaaagaagttgacact<br>aaaatattcatgaaaaaataaatatgcagaaataatcttaaacacaatttttaaaaagaaattattttaaggagaataagcctaaaagtgattaa<font color="green"><u>NNNNN<br></u></font><font color="red">CACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTG<br>GAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTA<br>GAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTCTAAAGACACATGCACACGTATGTTTA<br>TTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATA<br>CTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACC<br>AAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGG<br>GGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAAC<br>CTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>aataagaagtccaggaat<br>acatgaaaaagacataaaactttagtatgtattgagggtgacatcacaaaacttctagaaaataataagctttttaataaatcctattgagataattgtt<br>aatcaattgacaaaacatacaatttgattcaatcaccctgctgtgctgtcaaatatgagatcttattaattctatctaactatatttttgtacccattac<br>ccatatccacttcctcctctctactgttcttcccagcctctggttaccatcattttactcactatcttaatgagtcaaatctcacaccatacacaaggat<br>aaaaaccgaagagttaaaggttttagatgtaaaaaaaaatcatacatattttaggagaaaatatatgaattcttctt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1000	281	NA	intergenic	
0	chr6	102283772	102283773	2000439	0	-	1104685082558	TGCCTGGTGAAGTGACTGAA	TGTGAACAACTGCAACAGCA	LINE	L1	L1HS	ataatgaagtttttaaatttttaaaattcatttttaattctatacacaagagtatatcattagtgaagtttccaagcttcagaaatagagacaatcttga<br>aattgttcataggaaggaaaaatacaggccacatacaaaaggttaagaatcagaatgacctgtgaacaactgcaacagcagaaaaaggcaatggagtaat<br>gcctccccaaaaattcaacctataattcttcatggaagactcaatgtttttgggcatataaggtcttaaatttgtactcagcaacctttctcaggatgct<br>attacagcctttaacaaaatgagaaaataattcaagaaaaatgcaagaataagatccaggaaatggggctgtagcacagaagatcgg<font color="green"><u>GGGAATTTTCTTT<br></u></font><font color="red">CTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACA<br>AATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTA<br>CTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATG<br>AACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAGCACATGAAGAAATGCTCACCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTA<br>TGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTG<br>TTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGACAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTA<br>CTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACC<br>AACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATCCTT<br>TGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACGCCGCATATTCTCACTCATAGGTGGGAATTGG<br>AACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGTGGGGGTCGGGGGAGGGGGGAGGGATAGCATGGGAGATATACCTAA<br>TGCTAGATGACCCATTAGTGGGTGCAGCGCCCCAGCATGGCACATGTATACATATGTAACTAACCTGCCCAATGTGCACATGTACCCTAAAACTTAGAGT<br>ATAATAAAAAAAAATAATAATAATAATAAAAAAATTAATTTATAAAAAAAAAAATTAATTAAATAATAGGAGATACTTTGGAGCTAATTGAGACTATTTT<br>CTTGTTCCAAACTTTACAAATTGTTCCAACCCACCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGGAATTTTCTTT</u></font>aggagtatggtgaaaaaaagt<br>cctagctacttcagaggctagaggaaaacaaagccatgttgcagcaggaaaacatataacttcagggtatgcttccaaagacataaaagaaactcatagg<br>ctgggcgccatggttcacggctgtaatcccagcactttgggaggccgaggcgggtggatcacctgagatcaggagtttgagcctggcaaacatggtgaaa<br>ccccatctctactaaaatacaaaaattagccaggcgtggtggcgggtgcctgcaatcctagctgctcggggggctgaggcatgagaatcacttgaacccg<br>ggggatggaagttgcagtgagccgaggtcatgccactacaatcctgcctgggcgacagagtgagat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2269	992	NA	intron:GRIK2:NM:021956:9/16	
0	chr6	69198746	69198747	2000440	0	-	1104685054532	TTGGCGTTACATGTCAGTCTTT	GACCGTGTTCCTTTGCTTTC	LINE	L1	L1HS	aataatgaaagggttaaattgtaaatttatataaatattttgtgggaatcatttgtatgtcagagttgtataatcctatgtttatttctgaacaaacaat<br>gtcaagaacttttcaagctgaccgtgttcctttgctttcttgtagctcagcaaaataagagataggcttttttggggggagaattaaatgaatttatttt<br>agttctaatttaaaattgtctttcagatagctctcctgaataccagtgcatctgtaaaattctgagttctgattttcatttgactcaatgtagttaccat<br>aattgtggtttccacagctaagttatgagaaaaaggaggttagggaggatggtatattgattaattagtttgagatttctgtg<font color="green"><u>TGCTTGTTTGAATTTCT<br></u></font><font color="red">ATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTGCATCCCAGGGATGAAGCCCACTTGAT<br>CATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAA<br>CTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGA<br>AGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAG<br>AAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCC<br>AAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAAC<br>AGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAG<br>GAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGG<br>CCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATG<br>GAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACA<br>GTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGA<br>TCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACT<br>GGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTA<br>GTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAA<br>AGAAAGGAAAAAAAAAAAAAAATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGCTTGTTTGAATTTCT</u></font>gataaaagcatctgttttcaattaaag<br>caggaagtcaggattagagatagagatatccaatatccatttattcatttattaaattaacatttatttattgcttctatgtgccaaaaacttctctata<br>tgttataattataaagactgacatgtaacgccaaatgagtatatttccaaagaaattacaatgttgaaagagaggagaataggagcaaagactaatcctc<br>acgtaattactattgttatatgctgtctaatgatgttttattcaatgatgaaccacataaattatataggtcccataacaccatattatttttgtagctt<br>ttttatgttgagataaacaaatacataaattgtactacaattgcctacagtattca	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	2914	443	NA	intergenic	
0	chr6	148195809	148195810	2000441	0	+	1104685224895;AC208053	CCCCTCCCAAAATTCTTGTT ;NA	GCATTTGGCCGAGTAGTCAT;NA	LINE	L1	L1HS	atttcttcatcccattattgatctaaaatgtctctagctctctcgggtaaaggaagaacatgcccatgtgttgcatcaggtaattcctattattgaaaag<br>ctgtgttcaatctaaaatgaccttttcttggattttttgtcaagctagctttgcaacccacattaaattgaagcttttgtatgaggaccgagaagcccgt<br>tgttgcgtgggcaatgacattcttagggtgtttgctcaggacagccggccctctggccagctggtggcaggagctggagcatttggccgagtagtcattg<br>ctgctttttttaagtccacagcaaagacagggcattgggtctgaatttggactataaagaaggatggacaagtgctatgc<font color="green"><u>CACAGATGAACTTTTTCTTT<br></u></font><font color="red">TGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTAT<br>CTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>CACAGATGAACTTTTTCTTT</u></font>agaggatctctgtgctttcataatcagaactcacagcatcagtacttttgaa<br>gatgtcgaacaagaattttgggaggggcagcatggagatttggacttttcacaaaaataaatttgataatcagcattggttttactttaattttagtggt<br>cctttatgattgtacatgtttatagtgacaaattacgtctgtgggattcgggcaggactttgaaaatggcctgattatgttaagctgcgttaagagtttt<br>ctgggaggctcacatgacttcactcagagaaaatgcccaaatggtaagagaggaactctcttaattgcctatttccgcatgttactgttttcttaagcaa<br>agattgttcatttacttaccttttaagt	Venter;OTHER	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR;E: fosmid-end sequencing	NA;NA	55;NA	2849;NA	202;NA	NA;NA	intergenic;intergenic	
0	chr7	70188690	70188691	2000442	0	-	1104685677975	CTTGGAGGCATTTGAAGGAA 	TTTACATGTGGGCCAATGAC	LINE	L1	L1HS	gtaaaaccccatctctactaaaaacacaaaaattagccaggtgtggtggcaggtgcccataatcccagctactcgggaggctgaggcaggagaactgctt<br>gaaccgggaggtggagcttgcagtgagtggtgatcgcaccactgcactccagcctgggtgacagacccagactctgtctcaaaaacccttctcaaattct<br>caaaaagtctacatgtatacttgcaaaggtctataaacaaaacgttagtttcaggaatacttgatctttatttcagaattttattttctaggtaatgact<br>cctaacaaatcagctttacatgtgggccaatgacctgttaaactaaaacccaaatacacaagtttgttttattgaaaatacataaa<font color="green"><u>GTAGCTCTGCTCTT<br></u></font><font color="red">CCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGA<br>ACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATACCACACTCTGGGGACTGTGG<br>TGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATA<br>TGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAGAACTTTGATGTTACAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>GTAGCTCTGCTCTT</u></font>gcgagtatttttctctacaactcagaaaggtaaattaaaacagtttctctggggaaaaaaatagagccttttacttccttcaaat<br>gcctccaagcactatgcacttgacaatctgtacagcgggcgcttcctgctgtctgtctgactcaaaaagaagagctcctttaacagagtggctaagagtg<br>caggctctaggggctttctgccaaatccaggtgtgccatttgccagcccactggtcctggggcagtttggcctctctgagcttccaagtgcccttggagg<br>tctatgatgaggtccgaaaaacctcccatcttcaaggtcttgggttgagagggtcaatgtggtgtctcccagaacaaccatgaaacttagaatccaaagg<br>t	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	594	181	NA	intron:AUTS2:NM:001127231:6/18	
0	chr8	5829285	5829286	2000443	0	-	1104685046825	TTCAGCCTCAAAACAAGTTCC	TCTCTTAAAACAACCTTACCACCTG	LINE	L1	L1HS	aaacgctttttggttctaacatacaatagggcattggtctgaagtgatgtcacccagctcgcagaagggaaagaacctgaggacattgggtctatattgg<br>ccaagggccgggaaacagagcggtcatagatggagtgtattcagcctcaaaacaagttcctaggggcgctcacagaggcacctgggtgagccagtctcga<br>agtgtttttgtaaaatataacacaggtcggggagaatgaagccaaagaagtccacgttcagggatgccttcaaatctgaaaaggagtttcagtaactcca<br>agtttagtaagcgcccaggagccatgtgtgaggaattctataatctcagtcagcagatagacataaagtactggcaatctgcagaatggaagatt<font color="green"><u>NNNNN<br></u></font><font color="red">TGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATAT<br>ACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATG<br>TCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGCATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACA<br>TGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATAGGTGGGAATTGAACAATGAGAT<br>CACATGGTCACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGCCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGA<br>CACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAA<br>AAAAAAAAA</font><font color="green"><u>NNNNN</u></font>acaggtggtaaggttgttttaagagattttgaagttatttcttttgttttctttcttgctttcttgtttgttttttgagatggagt<br>ctcactccatgtcgcccaggttggagtgcagtggcacaatcttggctcactgcaacctccacctcatggattcaagcaattctcttgcctcagcctccca<br>agtagccaggattacaggacctgccaccatgtctggatactttttttttttttttgtatttttagtagagatggggtgttaccatgttggccaggctggt<br>cttgaacccctgacctcaagtgatccgcccagcttgatctcccaaagcatagggattacaggcgtgagccactgcacctggcctgaagttatttctaata<br>gaagaaaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	901	293	NA	intergenic	
0	chr8	87315040	87315041	2000444	0	+	1104685362558	TCAGGGTCCTATTCCTACCA 	AACCCCATTGAACTTAAGCAAA	LINE	L1	L1HS	atttttagtacagacagggtttcaacatgttggccaggatggtctctatctcctgacctcacgatccgcccatctcggcctcccaaagtactgggattac<br>aggcatgagccactatgctgggcctattattgctattttaaaattcattcaaataataaataaaaggttaaagtaaaaagtgcctcacttttaacttata<br>acacagtaaataatataggtagctacaaccaacattggtgaatgaggacccactttggggtcctcaataatctttaagagtgtaaagatttcttaagacc<br>aaaaagcttgagaaccacctatctagaggatatttatcagggtcctattcctaccatagacaagctgaaacaaagagaatcttgagcaaggaaac<font color="green"><u>NNNNN<br></u></font><font color="red">CACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>tgaatggaatgacatcactttgagtcagtagcatcctgacaaggcagctcaatgccatgagccc<br>atggttgtgtgtcctctgagcttctccagttcttgtccattctcaggcccagctttcctgaataaatttcctatctttccaataaattgactttgcttaa<br>gttcaatggggttaatttctgttgactgcaatcaaatcatgctaatgaacacaatgtttagtaatatcctttttaaagttgtgtctgaaatctttcattt<br>atagttcaaactcttttttgagttatttcctcaaactcaaggaggaaagttgttgtgggggggccacagcaacaaatgggaaatttaattggaaaatcca<br>attctgctctccctgggctactttaaaccac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	377	250	NA	intergenic	
0	chr9	32463888	32463889	2000445	0	-	1104685683105	GGAGGAATAAGGGATGAACG 	GAAGCAGCCTAGCTCCACAC	LINE	L1	L1HS	gtgctttgataagggtttggggtttgggtttgagcatcctggtccctgtatatgggttttaacggaaggaaggaactctgcagaacagagggcaaaagct<br>tggagctctttagggcaatctgcaagaacaggaaagggagagggatgagcagagtactgggagactgctttcttccccagcgccccagctgtactgtcca<br>ttgtctgtgtgtggcctgctgtcactagagcactccccatcccccgccccagaattctctggtcactctgcagccatcttaacatgtagacagcccagag<br>gtatccaagaactgatttccatggtggacgcttcaggatttggtggtgtttcattctggaggaataagggatgaacggtatgacagttgtggttg<font color="green"><u>NNNNN<br></u></font><font color="red">GGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACAT<br>GTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>cagaatgaggaggaagc<br>tgtttttctttcctcatggagcagagaataaagatggggtgaaagaaagttcattctgaacaaagaacttccaacatgcatacccatgactacacataat<br>taagatagtttgcttttctccacctcagtgtgtggagctaggctgcttctttagccacaggttgcatgggtgaaggtcagtatgccatagacttaactta<br>tgattggttgagcctctttacccagttattgatttttacttagttttaagtatagctgtaatagttttaacttattaggatttatacctattgcctagag<br>taacacttaaaatatttgagattattagtatttaattgaatttcagtatataattgaataccattataagtgaatttt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	392	222	NA	intron:DDX58:NM:014314:16/18	
0	chr8	119721703	119721704	2000446	0	+	1104685369726	GGAACAGGGGAAAGGTTTTG 	CTGGGAGTTGCTGTGGATTT	LINE	L1	L1HS	gccctgaaatatgtctttagctcatctccagttctttatagtttaaaaagcccgactatcttctttaacaacctcttcagtttcaagcccaatcatttga<br>agagatctacctttcacaaattggaaaaataagattttgaagtagtgtttacagcccatgtagactagaacaagaatagttaaaaaggtaagcatgagag<br>gccttttcagctgagtagcaccagtttgaaagtgaacatcagtatttctacttaaagtatgttaggttgtgtaggttatatggctttgggaacaggggaa<br>aggttttgaaaagataaatcagaggagattatacgggaagacttttattctgcagaaaaaaaagtatctgagtattatatttttt<font color="green"><u>CCCAGAAACTTCTTT<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACAT<br>GTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCC<br>AGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAG<br>TTTACTGAGAATCATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGC<br>CACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAA<br>CTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAA<br>AACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAA<br>AAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCA<br>GTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATA<br>AAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAA</font><font color="green"><u>CCCAGAAACTTCTTT</u></font>cttgctaaagactatggaatcaa<br>aatccacagcaactcccagcatgttaagagaagagaccagaatttcagtgacattttaggattaggatagattaatgtcatctctgtgtcccaagagtca<br>caacatattgataaaacggtgatcaggatgccgttataaaatgacatcctgtgtaagtcagtgtggctactcacagaagatccccaacatggattggtga<br>gtccactggaaaaaggaaaacagtgtactttgtggctggtggttctgtagtcaaaggcatagtttcctggacaaacatgaagcctaaactgtattcacaa<br>ggaaaaatggcaaaagagaaagcccagatttaaaaggtagaagggaattgattgacacaaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1131	155	NA	intergenic	
0	chr9	118083886	118083887	2000447	0	-	1104685429720	NA	NA	LINE	L1	L1HS	actcaacaagtgtataacgtttaaaagtcagcttcactgaggtatgtttacatgcaataaaacttaccaagattgagtgcatatttcaatgagtttagac<br>aaatgtatgtaaccacaactacaatagtaataatatagagcatttctatcactgcaaaaaatacccttgtctctgcaataaattccttctccactccctc<br>aggctcttggcagtgatttatctgtttctgtcactatagttttgccttttctaaaatttcacaaaattttaatcatagtgtgtagtcttctgactctggc<br>ttctttcacttagaataatgcattcattatgttgtgcatatcagtagttggttcatttttatttgcagaataatattctattgtat<font color="green"><u>AAGTGTGGCATATT<br></u></font><font color="red">TCTTGTAAATTTGTTTCAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTT<br>CACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTG<br>GACATGAAGTCCTTGCCCAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTA<br>TGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATG<br>GCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCAT<br>TGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATC<br>ATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGG<br>ATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCA<br>TCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGG<br>GAATACCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCG<br>CACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAATTAAAAAAAAAAA<br>ATAAAAATAAATAAAAATGAAATTACAAAAAAAAAAA</font><font color="green"><u>AAGTGTGGCATATT</u></font>ttcttatccattcaccaattaatgaatatttaggtcatttcacttatat<br>tatgttatcagttattatgaataaagctgctgggaccattcaagtaaaaatctttgtgtggacagacgtttacatttctctagggtaaccacgtaggagt<br>ggaatttctggatcatattgtaagcatttgttgaacattataagaaattgccaaacttttccaaaatattgtgcattcccattagcaacatttgagtttc<br>cagttgttgcacttctcaccaaaacttaaaatcattttttaaaatcatagccgttgtaatggttgtgcagtggcatctcactatggttttaatttgtatt<br>ttcatgatgtctaatgatgcttaacatgtttccataa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DEC1:NM:017418:4/8	
0	chrX	129525281	129525282	2000448	0	-	1104685474628	GCAAAGGGATTTTCCAAACA 	AGGAGCAATAGGCCATACCA	LINE	L1	L1HS	tatataaatatatacagttctgtggcacataatgatgtttcagtcaacaatggaccacgtatatgatggtggtcccataagattataatactgtattctt<br>actgtaccttttctgtgtttagatatatttagatacacaaatactttctgtgtttagatatatttagatacacaaatatttagatacacaattgttacca<br>ttgtgtaataattacagtatccagtacagtaacaagctataggtttgtagcctaggagcaataggccataccatataccccagatgtacagtaggctata<br>ccatctaggtttgtgtaagtacactgtgatgttcacacaatgacgaaattgcctaatgatgcatttcttagaacgtatctctatcatt<font color="green"><u>AAGAGATATGTG<br></u></font><font color="red">TTGCAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAACAGCAAAGACTT<br>GGAACCAACCCAAATGTCTAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ATCTAATGCTAGATGACACATTAGTGGCTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATATGTG</u></font>ctatatatatttgcatgggtgtgcactcacacacacatgcacttttgtgttgtttggaaa<br>atccctttgcaaaatggtgcctgggttggaacagggagaggtagttaaggggcatgtttgtttcttttgaaattacatagatacattctcgctgtgaaaa<br>tatatgacaagttatccggcgcggtggcttacgcctgtaatcccagcactttgggaggccaaggcaggcggatcatctgaggtcaggaatttgagaccag<br>cctggccaacatggtgaaaccccgtctctactaaaaatagaaaaattagctgggcgtggtggcaggtgcctgtaatcccagctactcaggaggctgaggc<br>aggaaaatctcttgaacccgggaggcgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	55	1256	218	NA	intergenic	
0	chr10	87176285	87176295	2000449	0	+	1104685328458	NA	NA	LINE	L1	NCLI	cccattcacaattgtttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaggaagaactacaaaccactgctcagt<br>gaataaaagaggatacaaacaagtggaagaacattccatgct<font color="green"><u>ACCAAAAAAGAGCCTGCATTGCCAAGTCAATACTAAGCCAAAAGAACAAAGCTGGAGG<br>CATCACGCTACCTGACTTCAAACTATACTACAAGGCCACAGTAACCAAAACAGCATGGTACTGGTACCAAAAAAGAGCCTGCATTGCCGAGTCAATCCTA<br>AGCCAAAAGAACAAAGCTGGAGGCATCATGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAG<br></u></font><font color="red">ACCAAAAAAGAGCCTGCATTGCCGAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCATGCTACCTGACTTCAAACTATACTACAAGGCCACAGT<br>AACCAAAACAGCATGGTACTGGTACCAAAAAAGA</font><font color="green"><u>ACCAAAAAAGAGCCTGCATTGCCAAGTCAATACTAAGCCAAAAGAACAAAGCTGGAGGCATCACGC<br>TACCTGACTTCAAACTATACTACAAGGCCACAGTAACCAAAACAGCATGGTACTGGTACCAAAAAAGAGCCTGCATTGCCGAGTCAATCCTAAGCCAAAA<br>GAACAAAGCTGGAGGCATCATGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAG</u></font>tggctagc<br>catatgtagaaagctgaaactgggtcccttccttacaccttatacaaaaattaattcaagatggattaaagacttacatgttagacctaaaaccataaaa<br>accctagaagaaaacctaggcaataccattcagg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	121624181	121624182	2000450	0	-	1104685660357	NA	NA	LINE	L1	NCLI	aaattcaccaagataaaccacattctgggtcataaaccaaatagtaaactttatatataagaagaacacttctaaataatccatggattaaaaactctca<br>aaggaaagctttgaatattgtgaactaaaccaaaatgaaaactcaacataccaaaatttgtgggatacagccaaagacgtgcttagatgcattagctgcc<br>ttaattagaagagaaggtctcaagtgaataatttaagcttccacctatgaaactagaaatgaagagcaaaataaacccaaattaaacagaagaaag<font color="green"><u>AGGT<br>TTACAATTTTATTGATTTTTTTTTTAAAGAGCTTTGAGTTTCACTGATTTTTTCTTTTTTTTCTGTTTTCTATTTCATGGATTTTTGTTCTCTATTATTT<br>CTTTCTTCTGTTTAATTTGGGTTTATTTTGCTCTTCATTTCTAGTTTCATAGGTGGAAGCTTAAATTATTCACTTGAGACCTTCTCTTCTAATTAAGGCA<br>GCTAATGCATCTAAGCATGTCTTTGGCTGTATCCCACAAATTTTGGTATGTTGAGTTTTCATTTTGGTTTAGTTCACAATATTCAAAGCTTTCCTTTGAG<br>AGTTTTTAATCCATGGATTGTTTAGAAGTGTTCTTCTTATATATAAAGTTTACTATTTGGTTTATGACCCAGAATGTGGTTTATCTTGGTGAATTTACAT<br>GTGCACTTGAAAAGAATGTGTATTCTGCTGTCATTAGGTAAACAAATGTCAATTAGATCTACTTGGTTGACAGTGTTGTGTAGTTTTGTGTTGTTCAGTA<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>AGGTTTACAATTTTATTGATTTTTTTTTTAAAGAGCTTTGAGTTTCACTGATTTTTTCTTTTTTTTCTGTTTTCTATTTC<br>ATGGATTTTTGTTCTCTATTATTTCTTTCTTCTGTTTAATTTGGGTTTATTTTGCTCTTCATTTCTAGTTTCATAGGTGGAAGCTTAAATTATTCACTTG<br>AGACCTTCTCTTCTAATTAAGGCAGCTAATGCATCTAAGCATGTCTTTGGCTGTATCCCACAAATTTTGGTATGTTGAGTTTTCATTTTGGTTTAGTTCA<br>CAATATTCAAAGCTTTCCTTTGAGAGTTTTTAATCCATGGATTGTTTAGAAGTGTTCTTCTTATATATAAAGTTTACTATTTGGTTTATGACCCAGAATG<br>TGGTTTATCTTGGTGAATTTACATGTGCACTTGAAAAGAATGTGTATTCTGCTGTCATTAGGTAAACAAATGTCAATTAGATCTACTTGGTTGACAGTGT<br>TGTGTAGTTTTGTGTTGTTCAGTA</u></font>aaattcaccaagataaaccacattctgggtcataaaccaaatagtaaactttatatataagaagaacacttctaaa<br>taatccatggattaaaaactctcaaaggaaagctttgaatattgtgaactaaaccaaaatgaaaactcaacataccaaaatttgtgggatacagccaaag<br>acgtgcttagatgcattagctgccttaattagaagagaaggtctcaagtgaataatttaagcttccacctatgaaactagaaatgaagagcaaaataaac<br>ccaaattaaacagaagaaag	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intron:C10orf119:NM:024834:1/16	
0	chr11	91135452	91135453	2000451	0	-	1104685402764	NA	NA	LINE	L1	NCLI	cacacatatatatacacacacatatacatatatacatacatatgtgtgtacatgtgtatatatacagtatgtatgtcactatatatgtgacataccgcat<br>atatatacatagacatatatacgtatatatgtgtgtgtgtatat<font color="green"><u>AAAACTATGAAAACCTAGAAGAAAACCTAGGCAATACCATTCAGGACATAGATATG<br>CGCAAAGACTTCATGACTAAAACACTTCTGCTCAGCAAAAGAAACTATCATCAGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTTGCAATCTATCC<br>ACCTGACAAAGGCCAAGAGGAATTATATAAATATATTGTGACATACTGTATATATATATACATCTATGTATGTGTGTGTGTGTGTATATATATATATACA<br></u></font><font color="red">TTATATATATATATATATATATATATATATATATATATATATATATATATATGTCATATATAGTGACATACAGCATATATATACATAAACAGACATATAT<br>ACATCTATGTGTGTGTATATATGTGTGTGTATATATATATTTATATATAAAAAGA</font><font color="green"><u>AAAACTATGAAAACCTAGAAGAAAACCTAGGCAATACCATTCAGG<br>ACATAGATATGCGCAAAGACTTCATGACTAAAACACTTCTGCTCAGCAAAAGAAACTATCATCAGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTT<br>GCAATCTATCCACCTGACAAAGGCCAAGAGGAATTATATAAATATATTGTGACATACTGTATATATATATACATCTATGTATGTGTGTGTGTGTGTATAT<br>ATATATATACA</u></font>gtttcacatttagtatttaatccatcttgagttgatttttgtgtaaggtgtaaggaaggtgtccagtttctgttttctgcatatagcta<br>gccagttttcccagcaccattaattaaacagggaatcctttctccactgcttgtt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	13164453	13164454	2000452	0	+	1104685703980	NA	NA	LINE	L1	NCLI	gcttgttatgaggattaataattgcaaagcacttagaacagggcctggcacatagtaagtgctctgtaagtgaatcttaacctaaaaaaggagaagaatg<br>atgaaaaatccaaattgaagcaactatttcaatatcataaaattactaatctatattcttttaaaatgtcaatgtcttaaaagacaagaaaaggctaaag<br>aattgattcaaattaaacgagactagagagacactacaagtaaatgtcatctgtgattatgggctggaccctgtgccaagaaaaaatactctaaagaaca<br>ttagtagaattaaattg<font color="green"><u>ACCTTGGGCGACTTATTTACTCTCTCTTTGCCTCAGGGCTGTCATCTGAAAAATGGAAATAATGATAATGTGTACCTCAGAGG<br>CTTGTTATGAGGATTAATAATTGCAAAGCACTTAGAACAGGGCCTGGCACATAGTAAGTGCTCTGTAAGTGAATCTTAACCTAAAAAAGGAGAAGAATGA<br>TGAAAAATCCAAATTGAAGCAACTATTTCAATATCATAAAATTACTAATCTATATTCTTTTAAAATGTCAATGTCTTAAAAGACAAGAAAAGGCTAAAGA<br>ATTGATTCAAATTAAACGAGACTAGAGAGACACTACAAGTAAATGTCATCTGTGATTATGGGCTGGACCCTGTGCCAAGAAAAAATACTCTAAAGAACAT<br>TAGTAGAATTAAATTGATTAAGTTAGCATACAGACTGTAGATTAGATAAAAGTATTATATCAATATTAAAGTTCCTGACATTGATAACTATATTGTGGTT<br></u></font><font color="red">TATCACAATATAGTTGGGCGAC</font><font color="green"><u>ACCTTGGGCGACTTATTTACTCTCTCTTTGCCTCAGGGCTGTCATCTGAAAAATGGAAATAATGATAATGTGTACCTC<br>AGAGGCTTGTTATGAGGATTAATAATTGCAAAGCACTTAGAACAGGGCCTGGCACATAGTAAGTGCTCTGTAAGTGAATCTTAACCTAAAAAAGGAGAAG<br>AATGATGAAAAATCCAAATTGAAGCAACTATTTCAATATCATAAAATTACTAATCTATATTCTTTTAAAATGTCAATGTCTTAAAAGACAAGAAAAGGCT<br>AAAGAATTGATTCAAATTAAACGAGACTAGAGAGACACTACAAGTAAATGTCATCTGTGATTATGGGCTGGACCCTGTGCCAAGAAAAAATACTCTAAAG<br>AACATTAGTAGAATTAAATTGATTAAGTTAGCATACAGACTGTAGATTAGATAAAAGTATTATATCAATATTAAAGTTCCTGACATTGATAACTATATTG<br>TGGTT</u></font>cttgttatgaggattaataattgcaaagcacttagaacagggcctggcacatagtaagtgctctgtaagtgaatcttaacctaaaaaaggagaag<br>aatgatgaaaaatccaaattgaagcaactatttcaatatcataaaattactaatctatattcttttaaaatgtcaatgtcttaaaagacaagaaaaggct<br>aaagaattgattcaaattaaacgagactagagagacactacaagtaaatgtcatctgtgattatgggctggaccctgtgccaagaaaaaatactctaaag<br>aacattagtagaattaaattga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	77487751	77487752	2000453	0	-	1104685536423	NA	NA	LINE	L1	NCLI	nnntattcaggagacccatctcacatgcagagacacacatagactcaaaataaagggatggaggaagatctaccaagcaaaaggaaagcaaaaaaaagca<br>ggagttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagcaggccattacataatggtaaagggatcaattcaac<br>aagaagagctaactatgctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacttacaaagagacttagaatccca<br>cacaataatagtgagagattttaacaccccactgtcaatattagacagatcaacgagacaaaaggttaacaaggatatccaggacttgaactcag<font color="green"><u>NNNNN<br></u></font><font color="red">CACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAG</font><font color="green"><u>NNNNN</u></font>gtggacctaatagatatct<br>acagaactctccaccccaaatcaacagaatatacattcttcttagcaccacatcgcacttattccaaaattgaccacatagtgggaagtaaagcactcct<br>cagcaaatgtaaaagaatagaaatcacaacaatctctcaaaccacagtgcaatcaaattagaactcaggattaagaaactcacccaaaactgcacgacta<br>catggaaactaaacaacctgctcctgaatgacaactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagatac<br>aatgtaccagaatctctgggacacattttaagcagtgtgtagagggaaatgtatagcactaaatgcccacaagaga	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr12	74824681	74824682	2000454	0	-	1104685238061	NA	NA	LINE	L1	NCLI	atccatgtccctacaaaggacaagaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacgttttcttaatccagtctatcgttg<br>ttggacatttgggttggttccaagtctttgctattgtgaatagtgccacagtaaacatacgtgtgcatgtgtctttatagcagcatgatttataatcctt<br>tgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaat<font color="green"><u>GTGCACCAGTTAGAATGGCGACCATTAAAAAGT<br>CAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAATGTG<br></u></font><font color="red">CA</font><font color="green"><u>GTGCACCAGTTAGAATGGCGACCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGAC<br>TGTAAACTAGTTCAACCATTGTGGAAGTCAATGTG</u></font>tggtatctcattgtggttttaatttgcgtttctctgatggccagtgatgatgaacattttttcat<br>gtgttttttggctgcataaatgtcttgttttgagaagtgtctgttcatatcctttgcccactttttgatggggttttttgtttttttcttgtaaatttgt<br>ttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtag<br>tt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	61289902	61289903	2000455	0	+	1104685498754	NA	NA	LINE	L1	NCLI	acccaaatgtccaacaatgatagactggattaag<font color="green"><u>AAATGTGGCACATATACACCATGGACTACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTG<br>TAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAAC<br>AATGAGATCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATGGCATTGGGAGATATACCTAATG<br>TTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCGTGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTAT<br></u></font><font color="red">TAATTAAAAAAAAAAAAAAAAAAAAGG</font><font color="green"><u>AAATGTGGCACATATACACCATGGACTACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGAC<br>ATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGA<br>TCACATGGACACAGGAAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATGGCATTGGGAGATATACCTAATGTTAGATG<br>ACGAGTTAGTGGGTGCAGCGCACCAGCGTGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTAT</u></font>tataata<br>ataaaagaaaataaatttaaaaaaaaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr2	118629408	118629409	2000456	0	-	1104685465055	NA	NA	LINE	L1	NCLI	cctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccaccaaaaagtgggcaaagga<br>tatggacagacacttctcaaaagaatacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaacc<br>acaatgagataccatctcacaccagttagaatggtgatcattaaaatgtcaggaaacgacaggtgctggagaggatgtggagaaataagaacacttttac<br>actgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctccgggatctagaactagaaataccatttgacccagcc<font color="green"><u>NNNNN<br></u></font><font color="red">TTTACTGGGTATATACCCAAAGGATTATAAATCATTGTGGAAGTCAGTGTGGCGATTCCTCCGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCA</font><font color="green"><u>NNNNN</u></font>gggtatatacccaaaggattataaatcatgctgctataaagacacatgcacatgtatgtttattgcagcactattcacaatagcaaagactt<br>ggaaccaagccaaatgtccaacaacgatagactggattaagaaaatgtggcacagatacaccatggaatactatgcagccataaaaaatgatgacttcat<br>gtcctttgtagggacatggatgaagctggaaaccatcattctcaggaaactatcccaaggacaaaaaaccaaacaccacatgttcttactcataggtggg<br>aactgaacaatgagaacacatggacacaggaaggggaacatcacactccggggactgttgtgggtgggggaaggggggagggatagccttaggagatata<br>cct	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr3	181871052	181871053	2000457	0	-	1104685597347	NA	NA	LINE	L1	NCLI	atcaccactatcccacagaaatacaaactactatcagagaataaatacctctctgcaaacaaactagaaaatctagaagaaatggataaattcctggaca<br>catacaccctcccaagactaaaccaggaagaagttgaatccctcaatagaccataacaagttctgaaattgaggcagcaattaatagcctaccaatcaaa<br>aaaagcccaggaccagacaaattcacagctgaattctaccagaggtacaaagagaagctggtaccattcc<font color="green"><u>CAGGGATATTGGCCTGAAGTTTTCTTTTGT<br>TGTTGTGTCTCTGCCAGGTTTTGTTATGAGGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGAGTCCCTCTCTTTCTACTGTTTGGAATAGTTTCAGA<br></u></font><font color="red">G</font><font color="green"><u>CAGGGATATTGGCCTGAAGTTTTCTTTTGTTGTTGTGTCTCTGCCAGGTTTTGTTATGAGGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGAGTCC<br>CTCTCTTTCTACTGTTTGGAATAGTTTCAGA</u></font>atgaacaacgatgcgaaaatcctcaataaaatactggcaaaccaaatccagcagcacatcaaaaagctt<br>atccagcacgatcaagtcagcttcatccctgggatgcaaggctggttcaacatacgcaaatcaataaacgtaatccatcacataacaaaaccaatgacaa<br>aaaccacatgattatctcaatagatgaagaaaacgcctttgacataattcaacactccttcatgcttaaaactctctataaactaggtattgatggaatg<br>t	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	4359671	4359672	2000458	0	+	1104685051542	TTGGAGCTGCAGAGACATTTT	GGTCAAATTCATGTGGGGTTA	LINE	L1	NCLI	gttaccattttaaaatgccattcattggtattaatttcattcacagtgtcgtataaccatcatcacaatctatttccacgactttctcatcaccccaaac<br>agacactctgtacccatgaagcaatagctccctatggtctcccccagcccctgtagcctctaatctactttttgcctctttgaatttgacttccagctac<br>ctcacatgagtggaatcacacactgtttgtccttttgtgactgctttttaaatttagactaaggg<font color="green"><u>TCCAAATTCATCCCTGTTGGCGCATGTGTCAGAAT<br>GTCCTTCCTTTTTAAGGCTGGACAATACTTTACTGTACGGACAGACCACATTTTATTTATCCATCCTTCCATGGATGGACACCTGGGTTGCTTCCACCTC<br></u></font><font color="red">T</font><font color="green"><u>TCCAAATTCATCCCTGTTGGCGCATGTGTCAGAATGTCCTTCCTTTTTAAGGCTGGACAATACTTTACTGTACGGACAGACCACATTTTATTTATCCAT<br>CCTTCCATGGATGGACACCTGGGTTGCTTCCACCTC</u></font>tgggtacggtgaataatgctgctatgaatgtgagtgtactaatgtctgtttgagtctctgcttt<br>tagctctttcgggaacatacctaggcgtggagtggccggatcatagggtaactcttagcttaattttcgtacagaactgccagactgctgcctacaatgg<br>ctgcaccttttcacgttcagtcattttagcatctagaggttctcgtcacccagggcgaagccaagcttctaaccccacatgaatttgaccttctttagag<br>a	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter; E:Insertion-specific detection:PCR	NA	60	1292	1159	NA	intergenic	
0	chr5	13855996	13855997	2000459	0	+	1104685151646	NA	NA	LINE	L1	NCLI	ctgaatgactactgggtaaa<font color="green"><u>CATAAATCTTACATTTTAATGCCCATACTCTTCAATAGTGGGAGACTTTAACACCCCACTCTCAATATTAGTCAGATCAA<br>TGTGACAGAAAATTAACAAGGATATTCAGGACTTGAACTCAGCTCTGGACCAAGCGGACCTAACAGACATCTACAGAACTCTCCACCCCAAATCAACAGA<br>ATATACAATCTTCTCAGCACCACATCATACTTATTCTAATATCGACCACATAATTGGAAGTAAAACACTCCTCAGCAAATGCAAAAGAATGCAAATCATA<br>AAAAACAGTCTCTCAGACCACAGTGCAATCAAATTAGAACTCAAGATTAAGAAACTCACTCAAAATTGCACAACTACATGGAAACTGAACAACCAGCTCC<br>TGAATGCCTACTGGGTAAATAATGAAATTAAGGCAGAAATAAATAAGTTCTTTGAAACCAATGAGAACAAAGACACAGTATACCAGAATTTCTGGGACAC<br>AGCTAAAGCACTGTTTAGAGGGAAATTTATAGCACTAACTGCCCACAGGAGAAAGTGGAAAAGATCTAAAATCAACACTCTAACATCACAATTAAAAGAA<br>CTAGAGAATCAAGAGCAAACAAATTCAAAAGCTAGCAGAAGACAAGACATAACTAAGATCAGAGCAGAACCGAAGGAGATAGAGACATGAAAAACCCTTC<br>AAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAAAACAGATAGACTGCTAGCCAGACTACTAAAGAAGAAAAGAGAGAAGAATCAAA<br></u></font><font color="red">AAGTACAATCAGTAAAATGATTCACTAGTAATTTAATTACATTTAACTTAATTTTAAGTAAAATAAAAAATGCTTCTCTCTCACTATGATGCAGAATATT<br>ACTCTGAACACCTACCTCATGCATCACTCAATATGAAAAGTAAACTAACAAGAACCACTCCACATAGATTTTCAT</font><font color="green"><u>CATAAATCTTACATTTTAATGCCCA<br>TACTCTTCAATAGTGGGAGACTTTAACACCCCACTCTCAATATTAGTCAGATCAATGTGACAGAAAATTAACAAGGATATTCAGGACTTGAACTCAGCTC<br>TGGACCAAGCGGACCTAACAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACAATCTTCTCAGCACCACATCATACTTATTCTAATATCGA<br>CCACATAATTGGAAGTAAAACACTCCTCAGCAAATGCAAAAGAATGCAAATCATAAAAAACAGTCTCTCAGACCACAGTGCAATCAAATTAGAACTCAAG<br>ATTAAGAAACTCACTCAAAATTGCACAACTACATGGAAACTGAACAACCAGCTCCTGAATGCCTACTGGGTAAATAATGAAATTAAGGCAGAAATAAATA<br>AGTTCTTTGAAACCAATGAGAACAAAGACACAGTATACCAGAATTTCTGGGACACAGCTAAAGCACTGTTTAGAGGGAAATTTATAGCACTAACTGCCCA<br>CAGGAGAAAGTGGAAAAGATCTAAAATCAACACTCTAACATCACAATTAAAAGAACTAGAGAATCAAGAGCAAACAAATTCAAAAGCTAGCAGAAGACAA<br>GACATAACTAAGATCAGAGCAGAACCGAAGGAGATAGAGACATGAAAAACCCTTCAAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAAC<br>AAAACAGATAGACTGCTAGCCAGACTACTAAAGAAGAAAAGAGAGAAGAATCAAA</u></font>tgaatgactactgggtaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DNAH5:NM:001369:30/79	
0	chr4	190429483	190429484	2000460	0	+	1104685743648	NA	NA	LINE	L1	NCLI	attggccatactgtagagaatcatttctggactctcaactctattctgtccaactatatttttatgctggtattatactgtcttgaattctgtagcttgc<br>agaaagtttcaaaatcagaaaaatgtgaataatttaattttgttcttcacttttaagaatgctttagttatttgcgtctttgcatttccatatgaatttg<br>attatcagcttttccatttttgtaaaaaatccagaaaaattgtata<font color="green"><u>TTTCATTGAATCTGTAAATCAATTTGAGTAATATGCTTATCTAAGTAATATTAA<br>ATCTTCCACTTAAGAAATACAGAATGCCCTTCTATTTACACAGGTCTTCTTACACTTTTTCAACAAGGTTCTGCAGTTTTCACTGTGCAAGTTCTACGCT<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>TTTCATTGAATCTGTAAATCAATTTGAGTAATATGCTTATCTAAGTAATATTAAATCTTCCACTTAAGAAATACAGAATG<br>CCCTTCTATTTACACAGGTCTTCTTACACTTTTTCAACAAGGTTCTGCAGTTTTCACTGTGCAAGTTCTACGCT</u></font>ccttttgttacatttattcctaaaca<br>ttctcttttttaatgctaatgtaagtagaagtgttgttaacattttatttccagattgttcattgctagtgcatagaaatgcaactaatttatcatattg<br>atctcagctatacttgtatgttaggcctgttctttactggattccttaggattttctatatacaagttcatgtcatctacaaacacaagtagttttactt<br>cttcctttccaatatgattg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intergenic	
0	chr6	120825423	120825424	2000461	0	-	1104685230479	NA	NA	LINE	L1	NCLI	taataactttagaatgttgaatgtaattctcatagtaagcacaagaaaatagttttagaatatacacaaaagaaaatgagatggaaattaaaatatttca<br>ttacaaaaaaatcaactaaacataaaagagtaatgcaggaaatgaggggtaaaaaggtacaaggcatatagaaaacatatgtaaaatgacagaattaagc<br>ttcttcttgtcagtaatta<font color="green"><u>ATTAGCAGAGTGAGAATGGACTAATACAAATAGCTTTTTCCATCCTTTCATTTTTGACCTATTTTGCATCTTTGGATCTCT<br>AATTAGTCTTTTGTAGAACAAATATAGTTTGATAATTTTTTTATTCCATTCTGTCAATCTTTGTCTTTTGATTGGATGGCTTAATCCATTCATGTTTAAA<br></u></font><font color="red">NNNNNNNNNNNNNNNNNNNN</font><font color="green"><u>ATTAGCAGAGTGAGAATGGACTAATACAAATAGCTTTTTCCATCCTTTCATTTTTGACCTATTTTGCATCTTTGGATCTC<br>TAATTAGTCTTTTGTAGAACAAATATAGTTTGATAATTTTTTTATTCCATTCTGTCAATCTTTGTCTTTTGATTGGATGGCTTAATCCATTCATGTTTAA<br>A</u></font>aaaaacatacccgagactgggtaatttttaaaggaaagaggtttaattgactcacagttatgcagggctagagagtcctcaggaaacttataatcatgg<br>cataatgggaagcaaaaatgtcctgcttcacatggcagcgggcaagagaagtgcagaccaaaaagggaaaagctccttataaaaccatcagatctcatga<br>gtactcactatcatgagaac	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	 RI sequence unavailable	NA	NA	NA	NA	intergenic	
0	chr7	52025190	52025191	2000462	0	+	1104685067157	NA	NA	LINE	L1	NCLI	ttgagcttaaataccaccaaaagaaaagggattttgtgtttctgggcaagtgaagcaagttatgggatggtaaccagaaacagtatggtaaacaagtgtt<br>tggtatgtggtaaggttttgtatgtagatttaagtcagtgccttctccattgaaaatagttcattatttaatctttcttcttaagacaagagtagtttac<br>acactactattacagtgttacactattctgtgttttcctgtgtgctattaccagtgagattt<font color="green"><u>CTTCAGATGATCTCTTCTTGCTCATTAACATCCTTTAC<br>TTCCAGATTGAAGGACTCCCTTTAACATTTCTTGTAGGACAGGTCTAGTGTCAATGAAATCCCTCAGCTTTTGTTCATCTGGGAAGGTCTTTATTTCTTC<br></u></font><font color="red">CTT</font><font color="green"><u>CTTCAGATGATCTCTTCTTGCTCATTAACATCCTTTACTTCCAGATTGAAGGACTCCCTTTAACATTTCTTGTAGGACAGGTCTAGTGTCAATGAAA<br>TCCCTCAGCTTTTGTTCATCTGGGAAGGTCTTTATTTCTTC</u></font>atgcttaaagagtattttcactggatatactattctaggttaaaagttttttttttttt<br>tccttcagcactttaaatatgtcacgctactgtctcctggattgtaaggtttctgctgaaaagtctgctgtcagacatattggagatccattgtatgtta<br>tttgtttcttctcttttgctgattttaggatcctttctttatcttgacttttgggaatttgattattaaatgcattgaggtagacttctttaggttaact<br>ttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chrX	26034445	26034446	2000463	0	+	1104685749366	NA	NA	LINE	L1	NCLI	tgtgagtcaattaaacctttttcctttataaattacccagtcttgagtagttctttatagcagtgtgagaatgaactaatacacttctacattatgcata<br>taatatatatgtagtcaatattggaacacttaaatatataaagcaaatattaacagaatagaatacagaaatagacagcaatacagtaggggacatcaat<br>accccacgttcaactatgtataaataatccagggagaaaataaagaaagacacagtatacttgaaccccatagtccaaaaggacctaaca<font color="green"><u>GCATATACAG<br>AACATTCCATCCAACACTTGTAGAATATATATTCTTTACAAGAGTACATGAAACATTGTCCACAATCAATCACATATTGGGCCACAAACAAGTCTTAAGA<br></u></font><font color="red">ACA</font><font color="green"><u>GCATATACAGAACATTCCATCCAACACTTGTAGAATATATATTCTTTACAAGAGTACATGAAACATTGTCCACAATCAATCACATATTGGGCCACAA<br>ACAAGTCTTAAGA</u></font>aattcaagaaaattaaaatcatatcaagtatcttttgcagccacatgatataaaactagaaatcagtaacaggaagaaaattggaaa<br>atatgcaaatgtgtaagtacacaagacactcctgaacaacatgttgttttcctgatagtgaataagtcttacaagatatgatggtttttaattaaattcc<br>aaacatacatataacacagaagaatatataacaaatatatgtgttcaccactatagattgagcagatgatgccatcttgctatataggttttatatattt<br>aaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr4	139468879	139473239	2000464	0	+	AC211783;AC203653	NA;NA	NA;NA	LINE	L1	L1HS	agacctcagaaataacaccacacatctacgacatctgatcttcaacaaacatgacaaaaacaagcaatggggaaaggctctcctgttaaataaatgatgc<br>tgggaaaactggctagccatatgcagaaaattgaaactggaaccttgccttacaccttatgcaaaaattaactctagatggattaaagtcttaaatgtaa<br>aacccaaaaccacaaacaccctagaagaaaccctaggcaataccattcagtacataggcgtgggcaaaggcttcataacggaaatgccaaaagcaattgc<br>aacaaaatccaaaattgacaaatggcatctaattaaactaaagagcttttgcacagcaaaaaaaaaaaaaaaaaattatcatc<font color="green"><u>AGAGTGAACAGGCAACC<br></u></font><font color="red">CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACAACCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGAAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAGTGAACAGGCAACC</u></font>tacagaatgggagaaaatgtt<br>tgcaatctacccatctgacaaaggtctaatatccagaatttacaaggaacttaaacaaatttacaagaaaaaagcaaacaaccccatcaaaaagttggta<br>aaggatatgaacagacacttctcaaaagaagacatttacatggccaacaaacatatgaaaaaagttcaacatcactgatcattagagaaatgcaaatcaa<br>aaccaaagtgagataccatctcacgccagttaaaatggcgattattaaaaagtcaagaaacaatagatgctggagaggctgtggagaaacaggaacactt<br>ttacacattggtgggaatgaaaattagttcaaccattgtgaaagacagtgtggtgattcctc	UCSC;UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr11	49125634	49127629	2000465	0	-	AC225590.1	NA	NA	LINE	L1	L1HS	gcaatgggctgattcttggagtacacaacgttcccggctccctcctcagctctgggggcagctggggcaagatgggcagggccatactgggcaggttcac<br>ctacaagtcccccagtggcaggcacaagcacaagtacctaaggagaatccagtgggtggccacctagtgcccatggaaagtggtttttcagaaacaattc<br>ttgaggctaaatctaatggcagaagtaagtccaaaaattagaagaaatttggaggagataatgaaactttgaattaagaaagaagaaattaaaaatgtga<br>aggacaaaatatacctgacagacatttaaagtttaatcacttaataacactgtgtagggcctgacaggatgtagaggttgaggaat<font color="green"><u>AAAACAGCGTCTAA<br></u></font><font color="red">TTCAATTAGGAAAAGAGGAAGTCAAAGTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCT<br>GATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATG<br>AGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCAC<br>TGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGT<br>AATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCC<br>CGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCAT<br>GGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGA<br>GAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACA<br>CCTTACACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACA<br>TAGGCGTGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCAC<br>AGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTAC<br>AATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAG<br>CCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAAT<br>CATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAGTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGG<br>AAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCT<br>GCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAA<br>GAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATT<br>CTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAACTGAACAATGAGATCACTTGGACACAGGAAGGGGAATA<br>TCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCA<br>GCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAA</font><font color="green"><u>AAA<br>ACAGCGTCTAA</u></font>actaaatcttagttttccagtatggataaggaggtaagtagtcatactgattcctgaaaccaggaagacaagatgagaataacttttca<br>agaacaaaacctgatgggttcttttggatgtgaggaacttgaagtggctgtaatttatattaagagcctgggtaatatctaggtggctttatgaatgtgc<br>aactcggaaaagaaaatagagcaagaaataaggatttggaagtcctaagaataaattgcctcttaaaatctggacatatataagaaaaaaaaaggaattc<br>aaacaatatttagtaaagtgaaaataacctgtatttattttaatttgttgactataacattctatgttatattattctgtactttctggaggtgact	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr6	91669522	91669523	2000466	0	+	AC207712	NA	NA	LINE	L1	L1HS	gtccagatgttctcatcatttagctcccacttgtgagaacatgcggtatttggttttctgggttagcttgctaaagataggacatggatggagatggagg<br>ccgttttccttaatctcattttcttttagaagtgttttaccacatatgctgtattgttttgtcatatactgaggcaaattaggttttcttttcttttata<br>cactctacttttgcatattgcttaacaatttctttatatagaattatatataataatatttatttctctttttatataaatagttcacctttatttagtt<br>ttctatttaaattcatagatttactctgcttatggtttgatgaggttcttaaagagtttagagttctcatcaaatttgagaaattt<font color="green"><u>TCAATATTATTATT<br></u></font><font color="red">TATTTTTTTTATTTTTATTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTG<br>CGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTC<br>CCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGA<br>TGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAAT<br>CCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCAT<br>GATTTATAGTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACA<br>ATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGC<br>CATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCA<br>TAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGCACATCAAAAAGCTTAT<br>CCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAA<br>AACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCGACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATCGATGGGACGT<br>ATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACA<br>GGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAA<br>GAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATGTCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCA<br>GCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATT<br>CACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATA<br>AAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCA<br>ATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTC<br>AATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAA<br>AACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAAT<br>GGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAAT<br>CAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAG<br>GACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTA<br>CCGTCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAAC</font><font color="green"><u>TCAATAT<br>TATTATT</u></font>ttaaaaaatagttttctgcctccctctgtgacttcaagtatatattttagactgctttgtattgtcccatagaaccctgatgctgagttcagt<br>ttcttaagtcttttttttcccaattcatagcttcattttgaagagtttccattgctatgctttcaaattcattgatttttttattgtagtatctaatctg<br>ctaattatatccagtgtattttttatgtcacatactatattttccctctttagaagttccatttgtgttttgtaatatcttctatttatctcctcatgat<br>attcatgctttcctctgtcttctctaatgtttaaagtgtacatatagtagtttcgacatccttgtctactagtgttatcttcactgtgatttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr6	46310307	46310308	2000467	0	-	AC210987	NA	NA	LINE	L1	L1HS	aagactctaattatacatatttagaatactttatattgtcccacagacctctttttccctattttaaatctagtctagataaagtattagttttacagac<br>ttactctttggctgtgactctttgggattctgatccattattctagcccacatcaaaccataaaagttttctgtgagttcatctggtttctccttatgcc<br>tctctatggcaaattctttctcccacaactacaccaaggatgaaagcaaacatgtacttttgctcccatgggaagggcttaccactttatggaatttggt<br>tcatttaggctttcctttcatcagatctctgggtttgaaagaaaagctatgttctatatgtaggtcgtgttcttctggcttattcttt<font color="green"><u>CTTTCTTTCTTT<br></u></font><font color="red">CTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCT<br>GCACACACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCTTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCT<br>TCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGT<br>TTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAG<br>TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATT<br>TATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCACCACACTGACTTCCACAATGG<br>TTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATT<br>CTAACTGGTGTGAGATGATATCTCATAGTGGTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAAT<br>GTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTG<br>GATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGCTGGTAGTTTCTTTTGCTGTGCAGAAGC<br>TCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCAGAGA<br>ATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGA<br>TCAAGTGGGCTTCATCCGTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATG<br>ATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAA<br>TAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCC<br>TCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTC<br>AAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCT<br>CAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGC<br>TTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAC<br>ACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCC<br>CCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACGAAAAAAGAGCTCACATTGCCAAGACAATCCTAAG<br>CCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGAT<br>ATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATGTCTACAACTATCTGATCTCTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGG<br>ATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAG<br>ATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACC</font><font color="green"><u>CTTTCTTTCTTT</u></font>ttttaagagacagggtctcac<br>cctatcactcaggctggagtatagtgacacaatcatagctcactgcagccttggactactggattcaagtgatcctctcacctcaacctcctgagtagct<br>gggactacaggcatgagccaccagtcctggctaaaacttccttcttgataaggtgatttatgtttccaccactggcattctacatctttctccacttcac<br>cttctataccagatgtctcagagacacagcacaaagaaaactccagccaaatgcacaataactattctttaatagagcatttgccctgatactctttttc<br>cttacttattcctattccagggctggttgacttagaaagtaacctaaaagtctttgtcccttttcct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr5	67564219	67564220	2000468	0	-	AC210434	NA	NA	LINE	L1	L1HS	cataaaaaaagatattttgaagttagtgcctggcagggcccactggaaagtttaagctgaaacactgggactccagaggctgcccaagccaaatatttca<br>ttactgatggaagcagtttggaagtgtgtgaaaaactgccacttacctctaaaaatgtaatacaaagaaaagaaagtgtatatgcaaagtgtggatcagt<br>attatatcaagatgtttgtttgctaactgctgctgagtcaaagctgtttctgtctgaatctctctcaggacttcaagtgaaaaatgtatattctggtggg<br>caaatctaatcccaattcttttcttaaataaacctttaaagcatattcatactttatgcttgtaatgattaacaccctgaactt<font color="green"><u>TAAACTTATTAAGCTT<br></u></font><font color="red">GATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTG<br>AAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGC<br>ATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAAGTTGGAT<br>TCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATCTGGCTCTCTGTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGAT<br>TTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATAAACAATCA<br>TGTCATCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTTCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACAC<br>TATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTTCAAAGGGAATGCTTCCAGTTTTTGCCCATTCAGTATGATATTGGCTGTG<br>GGTTTGTCATAGATAGCTCTTATTATTTTGAAATACGTCCCATCAATACCTAATTTATTGAGAGTTTTTAGCATGAAGGGTTGTTGAATTTTGTCAAAGG<br>CTTTTTCTGCATCTATTGAGATAATCATGTGGTTTTTGTCTTTGGCTCTGTTTATATGCTGGATTACATTTATTGATTTGCGTATATTGAACCAGCCTTG<br>CATCCCAGGGATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTATTTTATTGAGGATTTTTGCATCAATG<br>TTCATCAAGGATATTGGTCTAAAATTCTCTTTTTTGGTTGTGTCTCTGCCCGGCTTTGGTATCAGAATGATGCTGGCCTCATAAAATGAGTTAGGGAGGA<br>TTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCTCCATGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGG<br>ACTCTTTTTGGTTGGTAAACTATTGATTATTGCCACAATTTCAGAGCCTGTTATTGGTCTATTCAGAGATTCAACTTCTTCCTGGTTTAGTCTTGGGAGA<br>GTGTATGTGTCGAGGAATGTAAGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGG<br>AACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTA<br>ATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGA<br>TTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCA<br>AAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAAC<br>CTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAA<br>CAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTG<br>GCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAG<br>GATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACT<br>AGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCG<br>GCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATG<br>CAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACA<br>CCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGG<br>GGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCA<br>CAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAACTTATTAAGCTT</u></font>tacgggtgacactacaacaa<br>atgatggcctgtgctctttgactaagcaaaaacaaagcaaaaaaaacaacgatgacttccttaattttgggacacatctgtttaatcagtagtaaaaaag<br>tgattagaagcagagctttaaagccaaagaggcttaggttttaatccttgctttgccacttactgaattcagtagtcttgggcaagttagttaacttgaa<br>tcccatttattcatctgtaaaatgggagtaattatgtgcagtaataaggattaaataatatatatatataaacatgacaggcatcgtgcccagtatgtag<br>aaagcacaaactaataggtagttattattgttagaattagtcatgtaatctttattattgttta	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PIK3R1:NM:181523:1/15	
0	chr8	24926546	24926547	2000469	0	-	AC207459	NA	NA	LINE	L1	L1HS	aataataataaataacacattcaattgagtacttatcgtgtacaaggatgctctgctgagtgcagaggttgcagggactccctttaagctcctccaaccc<br>cttgcgttgcacagctgatctctttattgtctgtgtgacattggtggagggtcaggagggaggaaggaagtgtgtgggctttggacctaagcagactggg<br>gaatgaaaaatcaatattctcccaatctgacttctgaaccttacttctcctggaaaatgggaataacagtaactactcacagagttgtgatgaaaattac<br>ctgaaacaatacaaatatctagaagaaagtctgacacctaggagtcgctctacctgtcatagctgtttccaagctcaataaataatttgaatgtcttcta<br><font color="green"><u>NNNNN</u></font><font color="red">CCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTA<br>AACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATG<br>GATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTC<br>ATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAA<br>ATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCA<br>ATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAAT<br>TCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATC<br>ATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTC<br>TGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCT<br>AGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTC<br>TTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAA<br>GGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGGGTAGG<br>AAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAA<br>AAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACT<br>TCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAAT<br>GCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTA<br>GCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAA<br>AAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAAT<br>TGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAATGTTCGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATA<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAGCATCCCCCCAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAA</font><font color="green"><u>NNNNN</u></font>aataaacaattgctgag<br>gtttttcaccaggcgaacccttcagtagaagacacttctctcataattggcctgaccaagcagtaaatcaccgaatgccttcaaaaggccaacttacatc<br>tatgtgtttgtgggtggaccctgtattgtgccttctgctagggtaaggggtaagcagtgacctcaccaacaagcttccgtccttttcagcatgtgagctc<br>ttccaatgttgagcacagaataaccttaggtaattctacagatggtctcaggacagagcctatgagctcagagagcattggctgaaaaaatcctaacaag<br>taaccaggagtaacctcattacttagtgcaaatttctaaatgataaaaacatgttgatttttttaaaattcacattgacagat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chrX	143406977	143409968	2000470	0	+	AC216285	NA	NA	LINE	L1	L1HS	ttttaagagttctctagtcaatagctttttttttttcctttttcctttttcctttttcttctttttttttttttttttttttttttagcagagagtacag<br>ttcttcttagaaaattattagatcagattagggagatttcaaaatatttatcaccttttaatttctttaaagaaattctaatcagactgaatatcaccaa<br>gatcataggcaagaaggctttgaattaatatgttctacttgcacaggaaaatatatcagttcatttgagtgagggtactgtctcagaccccatgctctat<br>tgggcaatccacccttattgacagagttgccagatttggcaagtaaacatacaggatgcccagaaacatttaaatttcagataaacaacaaat<font color="green"><u>AAGAAGA<br></u></font><font color="red">AAAAAAAGAGACAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACA<br>AACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCT<br>GAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAG<br>AGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTC<br>TGATACCAAAGCCTGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAA<br>CCGAATCCAGCAGCACATCAAAAAGCTTATCCAACATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTA<br>ATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATATTCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAA<br>CTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGACAATATCATACTGAATGGGCAAAAACTGGA<br>AGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAG<br>AAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCC<br>AAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAAC<br>AGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAG<br>GAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGG<br>CCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATG<br>GAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACCACAAGGCTACA<br>GTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGA<br>TCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACT<br>GGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGC<br>ATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCACGTCCAAAACACCAAAAGCAATGGCAACCAAAGCCAAAATTGACAAATGGGATCTAATTAAAC<br>TAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCT<br>AATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAA<br>GAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACAC<br>CAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACT<br>AGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAG<br>GACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAA<br>TGATAGACTGGATTGAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAA<br>ATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGA<br>CACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAG<br>TGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACATGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAATCA<br>TTTATTAAAACAAAGTTTTTATATTTTTATAATAGTGTTTCACTTGATAAATATTTTTGAATAAATGAATGAGGAAATTAAAGAAAAAAAAAA</font><font color="green"><u>AAGAAGA<br></u></font>tatgcactatttggatgcaatttttgggacttaatatgtggtatacacttttattttaaaatatttatttacttgaaattcaactttaacttggtgtcct<br>atattttatctggcaattctattgctataagatggggcatctgttaaagaattgtatcttagctcatgagaggctgccaagccacctgaattattcctta<br>catcactcccctgaggcacacaatccttattcaccatgggctctacaataagcagtttattcaatacacatctacataaactgatagatcacttactaag<br>tactgggcactggggtcacacggtaaataaggcccactccccaccctggagaagctcactatccagggaaggaggtaaacctgtaaacaaatt	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	95316300	95318844	2000471	0	-	AC206477	NA	NA	LINE	L1	L1HS	agtaaagctctcctcagcaaatgtaaaagaccacaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagactcact<br>aaaaaccgctaaactacatggaaactgaacaacctgctcctgaatgactactgggtacataaggaaatgaaggcagaaataaagatgttctttgaaacca<br>acgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgaccacaacagaaagcagga<br>aagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcaagagcaaacattcaaaagctagcagaaggcaagaaataactaaaatcag<br><font color="green"><u>NNNNN</u></font><font color="red">GGAGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCAT<br>CTGAGGTACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCC<br>TCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTG<br>CGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCAC<br>AGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCG<br>AACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCT<br>CTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGT<br>GGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCA<br>GCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGA<br>TAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCA<br>ACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAG<br>GCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAA<br>GGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAG<br>CGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTG<br>TACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCA<br>GATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAA<br>ATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAG<br>AGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAAAAAATA<br>CTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTAC<br>CAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAG<br>GATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCC<br>ATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAA<br>CAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGAT<br>CAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTT<br>AGACTCCCACACATTAATAATGAGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAAC<br>TCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCC</font><font color="green"><u>NNNNN</u></font>caaatcaacagaatatacatttttttcagcaccacaccacacct<br>attccaaaattgaccacatagttggaagtaaagctctcctcagcaaatgtaaaagaacagaaattataacaaactatctctcagaccacagtgcaatcaa<br>actagaactcaggattaagaatctcactcaaagccgctcaactacatggaaactgaacaacctgctcctgaatgactactgggtacataacgaaatgaag<br>gcagaaataaagatgttctttgaaaccaacgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatag<br>cactaaatgaccacaacagaaagcaggaaagatccaaaattgacaccctaacatca	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr1	183969686	183969687	2000472	0	-	AC206734	NA	NA	LINE	L1	L1HS	agaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcgctccactgcactccagcctgggcgacagagcgagactcagtctcaaaaaaaaa<br>aaaaaaaaaaaatggggggctgaaatacactgtcctcttagaattgtacacctagcaacacttcctttcaataaggagagtcaattggagacattttcag<br>ataaacaaaaattgagataatttactagtaggtaaagaatcacctaaatccatgtacttcagggaaaaggtaaataataaagacttaagatgcagaaatc<br>tatgatgaacaaagaaaatgttaaacacgtgggtggatcttaaattaattgactttataaaatgagaacaatactgtgcaatttaa<font color="green"><u>GGGATTACAAAATC<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGTCTACAGCTCCCAGCGTGAGCGCCGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCACGAGCCAAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAGGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGATACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACACAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAGAAAATTTAGACGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGCATGGAACCAAGCTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACGAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTCTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAGACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATATATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATG</font><font color="green"><u>GGGATTACAAAATC<br></u></font>aagataaaactaaaatatgacgtaacaatatttcatttgggatgggggtgactatagttaaatcattctaagttccttgtattgatttggagagggtaac<br>atttttattaaatttaaactttgtcaagttagatatacacatcttatttttatgatagccattaactactgagggagaaacataaaatgagaggaaaaca<br>tctcaatcaatcaatcaataagttaagaaaagaaaaattgaaaaaaagtaccaccactgcagaacatattttcttctctgacacacatggaccttttaca<br>aaaaatagacacatagaggccaaaaaacgagactgaaaagttgaaaggaattggcatcatatcacattctcagaatatatcacaac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:GLT25D2:NM:015101:1/12	
0	chr11	40841289	40841290	2000473	0	-	AC207587	NA	NA	LINE	L1	L1HS	tttcattatatttcttatacctttttgttgaaaatcagacattttatagaatgtgctacagcaatgctagatttctatttttgcttttgtaaaatgaagt<br>ttgttgacattagtggttttttgtgtcttttttttaatttagtcacttttctggattaattctgaaatttgtcttccctctggtatgtagttgctgatgt<br>ttctgctcagatgttttaaaattaattcttgattttacttttaattctagcttcctagagtttttctatgtatcttgagtacgttaataattagccaatg<br>actgatcagaaattatgcttaaccatctcagaacagtaacccttcagttttctgcagatgcagtgtatggtgaatcacattc<font color="green"><u>AAATTTCAGCCAATTTTC<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTCTTTGTTAGGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGC<br>AGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCT<br>CCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGT<br>TTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCAT<br>AGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGC<br>AATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGT<br>TCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC<br>TCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTCTGATGGCCAG<br>TGATGATGAGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTT<br>GTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTT<br>GCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGG<br>TGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCT<br>TTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAA<br>ATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTCAGGAAACCCATCTCACGTGCAGAGA<br>CACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGAC<br>TTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCAC<br>CCAATACAGGAGCACCCACATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACT<br>GTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACT<br>CTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAAT<br>GTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATG<br>GAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACA<br>TACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCC<br>TAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAAT<br>AGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAA<br>AAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAAC<br>ACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAA<br>TAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGG<br>TACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGA<br>TACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCG<br>AATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATC<br>CAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTC<br>TCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGC<br>ATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAG<br>GAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAA<br>ATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGA<br>GAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAG<br>AACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCA<br>TACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAA<br>CCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTA<br>ACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGA</font><font color="green"><u>AAATTTCAGCCAATTTTC</u></font>aagccttccctggcatttattttctgct<br>ggacccttttgcatctcctgtgtttatgcacacagcttctgggttgaccaggactatgcggctagcttagaagctcctaatttttaactacatatatgta<br>tagcctcagtcaggaatatattttccccaaccatgcaatgtgaagctttgaaaatccattgtaatttctactaacaacaccaataggctttgtgggcatt<br>gctgccaacatcaactacaacaaaggtgccagtcctcctggctttactctgctctggctgaatctccatccagtggtggaagtggggaagtagcagaatt<br>ccggggcaagaacattataaaatcctcttcttacctgttcttctgcagtttttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr6	162181267	162181268	2000474	0	+	AC221034	NA	NA	LINE	L1	L1HS	tgtccacctgaacataaaactgggttcagttttctgaagtctgaccaatgagctgacatactgatagctcactgaggtaaaagaagctttgtgatacaac<br>tgaaggatgtttatactttcagtgaacgaggcatagcagcctaaatgcaaccgattgaaccacaaataatacttctcaatcaaatggccttttatctttc<br>ttgtctctaaatatacccttttaccacacagctcgttcttaaaaaaaaaaaatccggtggtcacaatgtcaattgctaactttattttctatttatatcg<br>tccactttatgaatacccttttcctcaatttaattagttagtgtcactcacactttaactgggaacattgtaagactgagctgaattt<font color="green"><u>GAAAACAATGCC<br></u></font><font color="red">CGAGGAGCCAAGATGGCCGATAATGGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACC<br>AAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTA<br>CATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGT<br>GACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGG<br>ATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACC<br>ACACCACACCTATTCCAAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCAC<br>AGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACCCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATA<br>ACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGG<br>GAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACA<br>CATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGA<br>GCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAA<br>AGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGAT<br>ACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATA<br>GTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCA<br>ATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTT<br>AGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAG<br>TGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTAT<br>CTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATA<br>AGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCT<br>CACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGCATTCAATTAGGAAAAGAGGAAGTCAAATT<br>GTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGA<br>TACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAA<br>AGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAA<br>CAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATC<br>AAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAA<br>AGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGA<br>TCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCC<br>CTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGA<br>TTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAA<br>AACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAAC<br>AGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAA<br>AAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATC<br>ATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAGCAACAGGTGC<br>TGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTT<br>TATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATAAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAGAAAAAGAAAAAACTAAAAATATAAGCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GAAAACAATGCC</u></font>acgatgtcagactgagtcacatcaatcttctaactgcccaccacagccacagcgcaactcaacgacacccacacgggtatctgc<br>gtcctggaattggacttttacatttttattttaatgaaaatgatgtattacatataagtaaaacaacacctttaaagatggaaaagaccctttttttcaa<br>gcctcaatttcagttctagtgggacagccaggtgggagggggtccctggagaaactccaaccagcctgccctctgcagtggggaggagcctggcccctcc<br>tcctcctgtgtggaacccgagattcaggctgagcgccggaagccgtctagcagggactctggcctagcgagagtccctgtttcccccttttcttcctttt<br>cacc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PARK2:NM:013988:4/9	
0	chr3	89022347	89022348	2000475	0	+	AC226626	NA	NA	LINE	L1	L1HS	gtatgtctttaaaaaaaaaagttgtaaaggatgagttcatgtcctttggagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaagg<br>acaaaaaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacatcacacaccagggcctgtcg<br>tggggtgaggggatgggggagggaaaacattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatat<br>gtaacaaacctacacgttgtgcacatgtaccctagaatttaaagtataataataataataaaaaaaaattcaaaaaaattgtat<font color="green"><u>AGAAGTGGCATGTTTA<br></u></font><font color="red">ATTTTATTTTTTTTTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATAT<br>GTATACATGTGCCATGCTGGTGCACTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCTCCCCTCCCCCCGACCCCACC<br>ACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTC<br>TTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATAGGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTG<br>TATATGTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTG<br>TGCATGTGTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAG<br>GAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTG<br>TTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATT<br>TCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTA<br>AATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGCGAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTG<br>ATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGA<br>AGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAATCTTTAATCCATCTTGA<br>ATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTT<br>CCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTC<br>TGTTTTGGTACCAGTACCATGATGTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAG<br>GATTGACTTGGCGATGCGGGCTCTTTTTTGGTTCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATG<br>GCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTGTCCT<br>CTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTG<br>CAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCT<br>CAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACA<br>AAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAG<br>CACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGA<br>CAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAA<br>TCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAG<br>AAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAA<br>CCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTC<br>TGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAAT<br>TAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAA<br>AACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAG<br>AATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAA<br>ATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAAC<br>AGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAA<br>CTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGACACCAAAGCTGG<br>GCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCA<br>CATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAAC<br>AGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAG<br>GTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAA<br>AACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGT<br>ATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGC<br>TGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCAT<br>GGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCA</font><font color="green"><u>AGAAGTGGCATGTTTA</u></font>a<br>agtaaagtaatttgattaaaaatattattaccagaggggcttcaagatggctcattagagacatcttttaccttttccaaggtaaaatccaaaattgtga<br>gtagataatttcacttcaaatacattgtccaagagaaaacactggaattcaacagagaaatgataggaaacacctaaagcaagtaaagggaagaaggcag<br>ctagcatgcttatctgatactggctgacagagattccccaatacagggaaagggtaagagagaggccccagaagtccacattccaaccactgactcttag<br>aatcctagccacaggagagtgtggctcatgggccctgaggtttatataaggacttctttggaagtcgcattgctcccaagatg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	78992045	78992046	2000476	0	+	AC210772	NA	NA	LINE	L1	L1HS	gtgagccgagatcgcaccacggcactccagcctgggtgacacagcaagactctgtctcaaaaaaaaaaaaccaaattaaagtataaagtaagtgccaaac<br>tttatttccaagttagaagtctctttgctcaacactccttactttagaacaaaatattttacattattttaaactatcaagatcattttgcactgttttt<br>aaagatacttgaaatgtctctaagttagaactgtaactttattatatagttttcttttgtatactgcaaatatctctttgattttagaaaatacctcttg<br>gatattagaagataaagttatagttctagctgatgaactgtaacttaattacatagctttttattggatgttatgtatataagata<font color="green"><u>AGCTAGGTTTTTCT<br></u></font><font color="red">TTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGA<br>GAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCT<br>TTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAA<br>TTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAATGCCTAG<br>GTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTC<br>AGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGAT<br>AGTTGTAGCTATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGC<br>CTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTCCATATG<br>AACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCCTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGGCCATTT<br>TCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTCCTTGAA<br>GAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTCAATGGGAGTTCACCCATGATTTGGCTCTCTGTTTGT<br>CTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTG<br>AGACGATGGGGTTTTCTAGATAAACAATCTAGATAAAAATGTGCCACATTCTGGGACAAAAAATACCCTAACAATTTTTAAAAAGTAAATCATACAATGT<br>CAGCTGTCAGACCACAGTGGAATTAAAATAGAAATCAAAGGGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCTAGCGTGA<br>GCGACGCAGAAGACGGTGATTTCTGCATTTCCAACTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCA<br>CCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCACACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCA<br>CCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGT<br>CCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGG<br>CTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGC<br>AGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTG<br>GAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGAC<br>ACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCAT<br>CTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTC<br>TCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAAT<br>TACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGA<br>AGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGT<br>ATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGAC<br>TATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGA<br>ACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAAT<br>TGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCG<br>GATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCA<br>AACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAA<br>GGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAA<br>TGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGAC<br>ACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGG<br>ATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGA<br>GACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCA<br>TAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAG<br>ACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAATCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATAT<br>ACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAA<br>ACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAA<br>TGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTC<br>AAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGTCACCCTAACATCACAATTAAAAGAACTAG<br>AAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAA<br>AATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGAC<br>ACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAA<br>ATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAAT<br>TGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTC<br>CTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAA<br>CCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCT<br>TATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGAC<br>AAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGA<br>CGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAG<br>ACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATGAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGA<br>AAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCT</font><font color="green"><u>AGCTAGGTTTTTCT</u></font>atagtcacaaatattcataacatctcagtaatttaa<br>aaccacaatcaccaagttcacagagattagctgggagtctgttccacactgtctactttaagagaaataaaaccctcttaccttacttagacatgctgtg<br>ttattattttaccattttattaaatataatttaccattacttaagataggacacctaaattaaattgctattcagaactactctttgtgttatcttggtc<br>aaatttcactattagtttagattcataaattgcactgtgaggatttctcagtttacatagttcaaaaactgcataagcattgaatattctcttccttgaa<br>gttttgatagaatttttcagcaaaaccacctattttaatagtttttaaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	16944254	16950743	2000477	0	+	AC208145	NA	NA	LINE	L1	L1HS	tgggcttattcctgaaagggccacaagtgtgctttggtgttggcctcagacgacttctgcaactgccaaactactaatcacatgtctttccaatcaatga<br>ccacattgtcattaaaagcaagactaccaggcatcactgctattgcatttactttgaaaatacaaggctggctgtggaatgttaaggcaggtagaccatt<br>gggggatgggaagcatttccttagatggggaactgaaggaagggaaggtgttctgaggagaggggaaagcagaaataaaaactagaaaaaggaaaggtac<br>aagatgtaatgaggagtttctgagtaacctggtatattagtttgataggactcccatagcaaagtaccgcaaagtgggtggctt<font color="green"><u>AGAAATTTATTGTCTT<br></u></font><font color="red">TGGCCATTTTCCTCCGGAAGTGCGGATCCCAGCGGCGGTCCTGTAGCTGAGCAGGCCTGTGGCTTGGTTCTATGTCCCTGTGGCTATGTTTCCAGTGTCC<br>TCTGGGTGTTTCCAAGAGCGGCAAGAAACGAATAAATCTCTGTTTTAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCG<br>TGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGC<br>GCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGAC<br>GCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAATGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAG<br>GGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCC<br>AGGCTTGCTTAGGTAAACAAAGCAGCCCGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGG<br>GGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAACTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAG<br>CTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACT<br>GACACCTCACACGGCAGGATATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACC<br>CATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAATTGGAAACTCTAAAACGCAGAGCGC<br>CTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCA<br>AATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAAATTAGAAGAATGTATAACTAGAATAACCAATACAG<br>AGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAG<br>GGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGG<br>GACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGG<br>AGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATATTCCTCGAGAAGAGCAACTCCAAGACACAT<br>AATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGACGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACA<br>GCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAG<br>CCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCT<br>GCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAAC<br>TGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTG<br>CAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGCGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCT<br>CAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACA<br>AAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAG<br>CACCCAGATTCATAAAGCAAGTTCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGA<br>CAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAA<br>TCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAG<br>AAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAA<br>CCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTC<br>TGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCACAATTGACACCCTAACATCACAAT<br>TAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAA<br>AACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAG<br>AATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAA<br>ATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAAC<br>AGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAA<br>CTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTAATGAGGCCAGCATCATTCTGATACCAAAGCCGG<br>GCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCA<br>CATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAAC<br>AGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAG<br>GTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAA<br>AACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGT<br>ATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGC<br>TGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCAT<br>GGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCA<br>CTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGG<br>TAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGC<br>CCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAACCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCA<br>TGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTG<br>AGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTAC<br>ACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGAC<br>ATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCA<br>CAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTA<br>CAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACAGTTCTCAAAAGAAGACATTTATGCA<br>GCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAA<br>TCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTG<br>GAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGC<br>TGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTA<br>AGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCAT<br>TCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAAT<br>ATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACC<br>AGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTTA<br>TTGTCTT</u></font>atagttgtggaggctagaagttcaagatcaaggtgtgggcaagattggttctttctgagagctatgaagaagaatctcgttgatgcctccccc<br>tagcttcttgtggtttgctggcaattttgggcattcattggcttgcagatgcatcacgtaatttctgccttcatcttcacatggcattctcgctgtctgc<br>atgtctgactccaaatttcccttttctatgaggacaccagtaatactggattagaggttcactcctctggtatgacctcatcttaattatgtctgcaatg<br>accctatttccaaataagatcacattctgaggtattggggcttaggaattcagcatatgtattttggggagcacagttcagcatgtgacat	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	93154151	93158134	2000478	0	+	AC213408	NA	NA	LINE	L1	L1HS	ataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatcgagaaaaccccattgtctctgcccaaaatc<br>tccttaagttgataagcaacttcagcaaactctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagacaaacagagag<br>ccaaatcatgagtgaactcccattcacaattgcttcaaagataataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaac<br>tacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatgaaaatggccatac<br><font color="green"><u>NNNNN</u></font><font color="red">CCGGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGT<br>TCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCG<br>CAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCG<br>GCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATC<br>AAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCC<br>CACCACAGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGT<br>GTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAACAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGACTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTACAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAAC</font><font color="green"><u>NNNNN</u></font>atagt<br>gttggaagttctggccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagacgacatg<br>attgtatatctagaaaaccccatcgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaat<br>cacaagcattcttatacaccaacaacagacaaacagagagccaaatcatgggtgaactcccattcacaattgcttcaaagagaataaaatacctaggaat<br>ccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggagacaaacaaatggaagaacattc	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intron:CCDC67:NM:181645:13/14	
0	chr5	121576132	121580808	2000479	0	+	AC203611	NA	NA	LINE	L1	L1HS	atgtctcttttggagaaatatctattcaggtcctttgtcctttttaaaattgggttatttgtaagatccttacatattttggagattagactcttgtcag<br>atacatgttttacgaatattttctccccacttgtagtcttcctttacatttttgttgatatatatgtatattttcttgctgtgcagaagctttttagttt<br>gatgttgtcccatttgtttatttttgcttttgctgcctgtgcttttatgtcatatccaaaatattattgctaaggtaatgccaaggaacttttcctctat<br>gttttttttctaggagttttacagttctggtcttatgtttaggtctttaatccattttgatgagttgatgtttgtgtgtggcat<font color="green"><u>AAGAGATACAATTTCA<br></u></font><font color="red">ACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGC<br>CCATCAGACTAACAGCGGATCTCTCGGCAGAAAACCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAG<br>AATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCC<br>CTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAA<br>GAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAA<br>TTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACAT<br>AGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAAC<br>CGACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCAACCAATAC<br>AGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACA<br>TTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACC<br>CCAAATCAACAGAATATACATTTTTTTCAGCACCACGCCACACCTATTCCAAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAG<br>AACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTG<br>AACAACCTGCTCCTGAATGACTACTGGCTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGA<br>ATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATC<br>ACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACA<br>CAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAG<br>AGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTA<br>CGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGACACATGCACTCTCCCAAGACTAAACCACGAAGAAGTTGAATCTCTGAATAGACCA<br>ATAACAGGCTCTGAAATTGTGGCAATAATCAATAATTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGG<br>AGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAA<br>GCCGGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCTTCAATAAAATACTGGCAAACCGAATCCAG<br>CAGCACATCAAAAAGCTTATCCACCATGATCAAATGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATA<br>TAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAA<br>ATTAGGTATTGATGGGACGTATTTCAAAATAATGAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCT<br>TTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAA<br>AGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTCTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCT<br>TAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAA<br>ATCATGAGTGAACTTCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACA<br>AACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCC<br>CAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAA<br>AGAGCCCACATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAA<br>CAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTAACAA<br>ACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGACATATGTAGAAAGCTGAAACTGGATCCCTTC<br>CTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTC<br>AGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTT<br>CTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGA<br>ATCTACAATGAACTCAAACAAATTGACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTT<br>ATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAAT<br>GGCAATCATTCAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCA<br>TTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAAT<br>CATGCTGCTATAAAGACACATGCACATGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTG<br>GATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACC<br>ATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGG<br>GGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGC<br>GCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAATTAAAAAAAAA<br>AAATTTAAAAAAAAAAAGAAAAAAGAAAAAAAATAAAAAAAATAAAAAAAAAAGAAAAGAAGAGCATTTGTTTGGATATATATGTATTTGAGCATGTCAT<br>TTATTTTTAAATTTTTCACAACTTTGTTGGACATCTAGTAATAATTAAATACTTTTTAAATTTAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATACAATTTCA</u></font>ttcttt<br>tgcatgtgaatatccagtcttcctgacaccatttattgaagagactatcctttccccattgtgccttcttaatgtccttgttgaaaattaattgtttgga<br>tttattttggggctctctattctgttccattgataacttttcttattttcttatagagttatgaaagctcttggctataaaacagaatagctaaaattta<br>aaaatcactaatagtaggattaattagatactggccctacagctaagaaaacagtgtgaaaaaatggcactaaagttttacaagttgtccaaatgccaaa<br>gtaaaattaattaatgctagtctaatcagatacctttcacataatgtacttttcatatccagcccaaaatttaaatat	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr12	13546687	13546688	2000480	0	-	AC226693	NA	NA	LINE	L1	L1HS	tggcaaaccgaatccaccagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaatatacgcaaatcaat<br>aaatgtaatccagcatataaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaagcctttgacaaaattcaacaacccttcatg<br>ctaaaaactctcaataaattaggtattgatgggacgtatttcaaaataataagagctatctatgacaaacccacagccaatatcatactgaatgggcaaa<br>aactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccgctcctattcaacatagtgttggaagttctggctagggcaatcag<br><font color="green"><u>NNNNN</u></font><font color="red">GCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCA<br>TCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAA<br>CAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAG<br>GACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATA<br>TCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTT<br>AAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAAGAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATAC<br>TACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCTCATATCT<br>ACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAG<br>AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAAACCCTAGA<br>AGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAA</font><font color="green"><u>NNNNN</u></font>cacaagacagggatgccctctcttaccact<br>cctattcaacatagtgttggaagttctggctagggcaattaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctg<br>tttgcagatgacatgattgtatatctagaaaaccccattgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaa<br>tcaatgtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaat<br>	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chrX	85605184	85609863	2000481	0	-	AC212998	NA	NA	LINE	L1	L1HS	tactatgcagccataaaaagaacaagatcatgtcctctgtagcaagatggatggagctggaggccattatcctaagcaaatcaatgcaggaacaaaaaac<br>caaataccacgtatgttcacgtataagtgggagctaaacattgtgtacacatggacagaaaaaagggaacaatagatactgaggcctacttgagggtgga<br>gggtgaggatcagaaaactacctatgaggtactatgcttattacctaggtgacaaaataactgtacaccaaatccccaaaacacacaatttacacatgga<br>ataaaattgcacatataccctctaaacataaaataaaagatagaaagagaatatttaaaatatagtgaaataactgtagtgttttatt<font color="green"><u>TTGTTTTGTTTT<br></u></font><font color="red">GTTTTTTTTTTTCATTTATTTTTTTTTATTTTATTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATA<br>CATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATACTATCCCTCCCCCCTCCCCCAACCCCACCACAGTC<br>CCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGA<br>TAGTTTACTGAGAATGATGATTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATG<br>TGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATG<br>TGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG<br>CCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCT<br>GACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCA<br>TGTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGACACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCA<br>GGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAAAGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCA<br>ACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGC<br>CCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAG<br>AATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCC<br>CTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAA<br>GAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAA<br>TTCTGCAATTAAAAGACACAGAGTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACAT<br>AGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAAC<br>CAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATAC<br>AGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATA<br>TTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACC<br>CCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAG<br>AACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTG<br>AACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGA<br>ATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATC<br>ACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAACAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACA<br>CAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTCTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAG<br>AGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTA<br>CGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCA<br>ATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGG<br>AGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAA<br>GCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAG<br>CAGCACATCAAAAAGCTTATCCATCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATA<br>TAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAA<br>ATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCT<br>TTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAA<br>AGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCT<br>TAAGCTGATAAGCAACTTCAGCAACGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAA<br>ATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGACGTGAAGGACCTCTTCAAGGAGAACTACA<br>AACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCC<br>CAAGGTCATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAA<br>AGAGCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAAC<br>AGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAA<br>CCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCC<br>TTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCA<br>GGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTC<br>TGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCATCCTACTCATCTGACAAAGGGCTAATATCCAGAA<br>TCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACT</font><font color="green"><u>TTGTTTTGTTTT</u></font>tgagaca<br>gtgtctcgctctgtagcccaggctggagtgcagtgttgtgatctcggctcactgcaacctccgcctcccaggttggagcaattctcctgcctcagcctcc<br>tgagtagctgggactacaggcatgcgccatcaggcacggctaatttttgtatttttagtagagacggggggtttcaccaggttggccaggctggtctcaa<br>actcctgacctcaagtgatcagcccacgtcagcctcctaaagtgctgggattacaggcgtgagccaccacacctggcctgaactaactgtagtgtaaata<br>aatctaatatttcaatttaaaaataaaaatgattgtgaggcattagatgcattagaaccatgatgagaagaatcacagaaa	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:DACH2:NM:001139515:1/12	
0	chr14	76211359	76211360	2000482	0	+	AC216134	NA	NA	LINE	L1	L1HS	tttttcatttgtgatataatagattgttccttggttttgtgtcttatgtctcaattctcttaattgttcatctcctgtgctaaaaatatacccactgaaa<br>taaatacacatttatttttctattgagggcatcttcagatttttccatatccttgaaatattggatgtgctctaaaaccaaggtttgggttaaatactag<br>cttagaaagtcacgtggacctcattctttctttcttctcttttctctctcaacccatagtgttcttttactgttctgttttctcctcttgcctttgagtt<br>tattagctttcgtctgttttccagggttccaggctgagattaattacagaaagtgggctatgaatttgagcttataaatcttt<font color="green"><u>AGAAAAATAATGATGTT<br></u></font><font color="red">TTTAGGGCAGGCCTGGTGGTGACAAAATCTCTCAACATTTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGGCTGGATATG<br>AAATTCTGGGTTGAAAATTCTTTTCTTTAAGAATGTTGAATATTGGCCCCCACTCTCTTCTGGCTTGTAGGGTTTCTGCCGAGAGATCCGCTGTTAGTCT<br>GATGGGCTTTCCTTTGAGGGTAACCCGACCTTTCTCTCTGGCTGCCCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGACAATTATGTGTCTT<br>GGAGTTGCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAAGTTCTCCTGGATAA<br>TATCCTGCAGAGTGTTTTCCAACTTGGTTCCATTCTCCACATCACTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACATAGTCCCATATGAA<br>GGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAA<br>TGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGAC<br>ACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGG<br>ATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGA<br>GACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCA<br>TAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAG<br>ACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATAT<br>ACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAA<br>ACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAA<br>TGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTC<br>AAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAG<br>AAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAA<br>AATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGAC<br>ACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAA<br>ATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAAT<br>TGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCTGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTC<br>CTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAA<br>CCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCT<br>TATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGAC<br>AAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGA<br>CGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAG<br>ACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGA<br>AAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACT<br>TCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCC<br>ATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAA<br>ATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGAT<br>TCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAA<br>GTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACGGTAACCAAAACAGCATGGTACTGGTAC<br>CAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGC<br>AATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAA<br>AATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGC<br>AAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAA<br>CTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAA<br>ACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACAC<br>ATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGT<br>CAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTG<br>GCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGAC<br>ACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGC<br>ACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACT<br>ATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGG<br>GGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACAT<br>GTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAATAATAATAATAATAATAATAATAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATAATGATGTT</u></font>gagggaatgaacagagggtaatgaggagtaatg<br>aaaacttaaaaaattttttttactattttcattttcttctccttagcgttgccgtccactctctgccagtgatgcggaaatgaaaaacctcgtgggctca<br>gcccgggagaaagggccagggaagttgggtggttctgtgcttggtctgtcaatggaggaggtaaagataagttcattttaggcttttgtgggttaacaca<br>gggtttagtgaaaattagtgagtgattgataatattcatgacaaactcatgtcttacattgaaaagagaaagattcaagattggagaaatgttttctcag<br>ggaagaacattttaaatggaattaatttctcccttcatgctactttcata	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:TTLL5:NM:015072:15/32	
0	chr10	78346605	78351577	2000483	0	+	AC217057	NA	NA	LINE	L1	L1HS	agtctaatatgttcttttaaagtttgaaaactatgctttttacttttatgtcattaactcatcatatgaatgtgattatggcagattggcatgagatagc<br>gattgcatttttttaatatggaaaaacagtggaaactgtctttctttccccactaattctaggctctttattctgtcctatttgtttgttggtccttggg<br>ccagcagttttaattactgtcactttattaagttttcatataaaattgggcaaatctctaacttgtttttcaataccctattaattattatttactttgg<br>ctgtcatttgtcttatataatgcaaataccttctcccattctgtggtttgtccctttactctcttaagaatgtttctggttaagt<font color="green"><u>AAAAATACTTAATTT<br></u></font><font color="red">TAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAG<br>CCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATA<br>AAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTTATTGGTGTACCTGAAAGTGATGGGGAGAATGGAACCA<br>AGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAG<br>ATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGG<br>GTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAG<br>GAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATTT<br>TGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGCAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAA<br>AGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTT<br>TAAATATAAATGGACTAAATTCTGCGATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCT<br>CACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCT<br>GATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAA<br>ATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGAAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTT<br>TAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGGAGACCTAATAGAC<br>ATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTC<br>TCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCG<br>CTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTGCATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAAC<br>AAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCA<br>AAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGA<br>ACTGAAGGAAATAGAGACACAAAAGACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGA<br>CTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAGTAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAG<br>AATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGT<br>TGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAAACAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAA<br>TTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCA<br>GCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAAT<br>ACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCA<br>ATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCA<br>TGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCA<br>AAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACTGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATC<br>AGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCG<br>TCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAA<br>CAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGAAGTGAAGGAC<br>CTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATTG<br>TGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAA<br>GTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTAC<br>AAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACA<br>ACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAA<br>GCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGCTTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAA<br>AACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCACGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATC<br>TAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGACCAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGA<br>CAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACAC<br>TTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGCTATC<br>ATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGA<br>CTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATA<br>TACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACATATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAAT<br>GTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGAC<br>ATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGA<br>TCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGACATACCTAATGCTAGATG<br>ACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAA<br>AAAAAAATAAATAAAATAAAAAATAATGCTGTAAAGAGAGAGGAACAGAGACAGGGAGAGTAAATTTAAAAAAA</font><font color="green"><u>AAAAATACTTAATTT</u></font>tatgtactaaa<br>atttttaatcctttcttttattattagtgttctttcctgtttaaaacatctgtgctacctcaatctgacaaatatattctgtgatttttttctaaaaggt<br>tgattgttttgcctttcatatttagatctataatctatcttgagaatcaagactatttgtatgatataaggtagtgatcaagtatttttttcttttaaca<br>catgaatattcaataattcaacaccatttattaaaaagaccattctgtgatataatcttccccatagacaaagtacccatatatgtgtgggcctgtcttg<br>ggctctttattgtgttccatcagtctatctgactgtccttaaatacaagcacattatcttaactaatgtaacta	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	83188340	83188341	2000484	0	+	AC225384	NA	NA	LINE	L1	L1HS	tacaagaccctgtatttgactattagtagcatgtaaagaaactgcaaaaaatatttccataaatttcaacagcaaagtggccgcaggtacagcctcattc<br>tataatgttgttttctatcgagattcaggaacatggtatcctcttagtaaacacttggcatttgctggactgctctaggcaagcttgcagtgctttgcat<br>acaaattatcacattattccctgtgtattcctggtgaggtagatagaaataacgctgtttaacaaaaaggtcacaaatccctgtatgtatccagcaactt<br>ggtaagaacaaaaagtgaaccattcaatgtacagttaagaaaaaataatcacacaactctgtaaacttttatgtctgctgcattt<font color="green"><u>AAGAAGTAAAAAATG<br></u></font><font color="red">GTTGACAGTGGGGTGTTAAAGTCTCCCATTATTAATGTGTGGGAGTCTAAGTCTCTTTGTAGGTCATTGAGGACTTGCTTTATGAATCTGGGTGCTCCTG<br>TATTGGGTGCATAAATATTTAGGATAGTTAGCTCCTCTTGTTGAATTGATCCCTTTACCATTATGTAATGGCCTTCTTTGTCTCTTTTGATCTTTGTTGG<br>TTTAAAGTCTGTTTTATCAGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTGGCTTGGTAGATCTTCCTCCATCCTTTTATTTTGAGCCTA<br>TGTGTGTCTCTGCACGTGAGATGGGTTTCCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAACTTGCCAGTCTGTGTCTTTTAATTGCAGAAT<br>TTAGTCCATTTATATTTAAAGTTAATATTGTTATGTGTGAATTTGATCCTGTCATTATGATGTTAGCTGGTGATTTTGCTCATTAGTTGATGCAGTTTCT<br>TCCTAGTCTCGATGGTCTTTACATTTTGGCATGATTTTGCAGCGGCTGGTACCGGTTGTTCCTTTCCATGTTTAGCGCTTCCTTCAGGAGCTCTTTTAGG<br>GCAGGCCTGGTGGTGACAAAATCTCTCAACATTTGCTTGTCTATAAAGTATTTTATTTCTCCTTCACTTATGAAGCTTAGTTTGGCTGGATATGAAATTC<br>TGGGTTGAAAATTCTTTTCTTTAAGAATGTTGAATATTGGCCCCCACTCTCTTCTGGCTTGTAGGGTTTCTGCCGAGAGATCCGCTGTTAGTCTGATGGG<br>CTTTCCTTTGAGGGTAACCCGACCTTTCTCTCTGGCTGCCCTTAACATTTTTTCCTTCATTTCAACTTTGGTGAATCTGACAATTATGTGTCTTGGAGTT<br>GCTCTTCTCGAGGAGTATCTTTGTGGCGTTCTCTGTATTTCCTGAATCTGAACGTTGGCCTGCCTTGCTAGATTGGGGAAGTTCTCCTGGATAATATCCT<br>GCAGAGTGTTTTCCAACTTGGTTCCATTCTCCACATCACTTTCAGGTACACCAATCAGACGTAGATTTGGTCTTTTCACATAGTCCCATATTTCTTGGAG<br>GCTTTGCTCATTTCTTTTTATTCTTTTTTCTCTAAACTTCCCTTCTCGCTTCATTTCATTCATTTCATCTTCCATTGCTGATACCCTTTCTTCCACTTGA<br>TCGCATCGGCTCCTGAGGCTTCTGCATTCTTCACGTAGTTCTCGAGCCTTGGTTTTCAGCTCCATCAGCTCCTTTAAGCACTTCTCTGTATTGGTTATTC<br>TAGTTATACATTCTTCTAAATTTTTTTCAAAGTTTTCAACTTCTTTGCCTTTGGTTTGAATGTCCTCCCGTAGCTCAGAGTAATTTGATCGTCTGAAGCC<br>TTCTTCTCTCAGCTCGTCAAAATCATTCTCCATCCAGCTTTGTTCTGTTGCTGGTGAGGAACTGCGTTCCTTTGGAGGAGGAGAGGCGCTCTGCGTTTTA<br>GAGTTTCCAGTTTTTCTGTTCTGTTTTTTCCCCATCTTTGTGGTTTTATCTACTTTTGGTCTTTGATGATGGTGATGTACAGATGGGTTTTCGGTGTAGA<br>TGTCCTTTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTAC<br>AGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCA<br>GCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAAC<br>TACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGAC<br>ACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTG<br>ACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAA<br>GGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATA<br>AAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACT<br>ACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATC<br>TCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTAC<br>CAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCA<br>TTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGC<br>AAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAAT<br>GTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAA<br>AAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAGCT<br>GGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAG<br>GAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAG<br>CCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACA<br>AACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTC<br>AAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAA<br>TGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCAT<br>ATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCT<br>ACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATC<br>TGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAA<br>ACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTA<br>GGCATTACCATTCAGGTCATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTA<br>AACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGG<br>GCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCA<br>AAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCA<br>CACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAA<br>ACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCA<br>AATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAA<br>CAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGAT<br>GAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACAT<br>GGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGAAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACAT<br>TAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTAAAAAATG</u></font>agttataaaagaataacggatgctttcaaatttatgtaagaggtaatagttttttatgataaatatccaaa<br>tacattatctacacactatgaaagttggcaaaatatgcatatctataacacaaagaaataacttgtgtttgcacagacagactttttgtttattgagtag<br>ccagatcattcagtgaaacattctgatctatcttattaaaaggtcaattacttaaataaatatttattaaatggttacttgttttcagtaattgctattg<br>gccccaaaaataagttgttgttcctaacttctaactgtccccttgccagtcacggagaggttaaaaatgtactttcaataaaagcaactttcttttgttt<br>cttttctttttttt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	144610084	144610085	2000485	0	-	AC214981	NA	NA	LINE	L1	L1HS	aggcttttcatgtggaaagatgcagcttgattagagaagaaagtgcatggttttaggatgcagatgtataccgactagaatgcagacagcagtcaatgta<br>tattgactagaatagacttgtctattaaaaatctgctaatatttattttaaagaaaaatatatctcaaaatacttacaactggaggctcccagaaacatc<br>atcaactatgtatgttgtgagcactgtgaaagcaaataacaaaagcactgttgtgactattaagatgattatatttaggagtcaaagaagtcaacaattt<br>tgatataaccagagtgctgtggaaaagtaattgaggcacctgacttaaacctgaggccatggaaattagaattttaattccataggat<font color="green"><u>AAAGAATGACCA<br></u></font><font color="red">CCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATC<br>TGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAGCAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCT<br>CCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATT<br>ACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAA<br>GTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTA<br>TCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACT<br>ATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAA<br>CTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATT<br>GTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGG<br>ATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAA<br>ACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAG<br>GAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAAT<br>GAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACA<br>CAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGA<br>TGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAG<br>ACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCAT<br>AAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGA<br>CAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATA<br>CATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAA<br>CTATCTGTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAAT<br>GACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCA<br>AAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGA<br>AAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAA<br>ATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACA<br>CAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAA<br>TCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATT<br>GTGACAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCC<br>TTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAAC<br>CAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTT<br>ATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACA<br>AAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGAC<br>GTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAATCCGGCACAAGA<br>CAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAA<br>AAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTT<br>CAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCA<br>TTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAA<br>TAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATT<br>CAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAG<br>TCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACC<br>AAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCA<br>ATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAA<br>ATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCA<br>AGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAAC<br>TACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAA<br>CAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGGCACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACA<br>TGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTC<br>AGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGG<br>CGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACA<br>CATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCA<br>CATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTA<br>TCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGAACACAGGAAGGGGAATATCACACTCTGGG<br>GACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATG<br>TATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATGACCA</u></font>gataatcaa<br>tagtattataggtgcatactgacatgaagaacatgagaatagatacacacacacacacacacacacacacacatacacacagacacacacatgaaggaag<br>actaaataccatggaaaaataggggaaaatgtaccagtcattagcattgaggtatccttgagatatcatattatttattacatattacttttggaaaaaa<br>aatttagccttcactagggtatgtgaaactgagtccacaagccaagttgtgcccaaaacagaaacaaagacactgcactcttaagttcattttgtctcag<br>cattcttattttatttggcagatagaaaattatgtgtaatttcctaattcccaatccttgctcagtctcttgccttttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	98103819	98103820	2000486	0	-	AC225317	NA	NA	LINE	L1	L1HS	agtttcaattacctacttggataacagttttactttaagcttcaagctgagctcagtattatgtaaatctgtaagtgccatggtgttttgttttagctca<br>atttgagaagtacagactttagaattgtccattttcaagaaagtgtcttctaagagccattctttgtgactgtggattaacaacaacatataaagaaagg<br>atgcaggtcacctttgaaatagccttgttttctcttaccaaaatagctttattcatgaaatgatagaacaaacatagtcactgcctaatggtgtgtctgg<br>agtttattccttctggtgggttcttcgtctcgctgacctcaacaatgaagctgcggaccctcacagtgagtgttacagctctt<font color="green"><u>AAAGATTGTGTGTCCGG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTCCTGCATTTCCATCTGAGCTTTGAA<br>GAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTG<br>GGAGGCACCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAAC<br>AAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAA<br>ACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGC<br>TGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGA<br>ATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGG<br>AGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAA<br>ATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGA<br>AAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCC<br>TCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAACTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCC<br>TCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAA<br>TTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACC<br>ACCAGACCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCAT<br>CGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATAT<br>AAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGC<br>AGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAA<br>CAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATCACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTA<br>TGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACC<br>CCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACA<br>GAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAG<br>CAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAACT<br>ACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACA<br>CCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGA<br>CACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAG<br>GAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAA<br>AGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTA<br>CAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCT<br>CTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACC<br>AGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCAT<br>TCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCA<br>AACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATG<br>TAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAA<br>AACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTG<br>GAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGG<br>AGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGC<br>CCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAA<br>ACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCA<br>AGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAAT<br>GGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATA<br>TGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACGCTACCTGACTTCAAACTATACTACAAGGCTA<br>CAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCT<br>GATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAA<br>CTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAG<br>GCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAA<br>ACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGG<br>CTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAA<br>AAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCAC<br>ACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAA<br>CTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAA<br>ATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAAC<br>AATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATG<br>AAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATG<br>GACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATT<br>AGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATTGTGTGTCCGG</u></font>agtttgttccttcagatgttcagatgtgtccgggtttcttccttctggtgggttcatggtctcgctg<br>acttcaggagtgaagccgcagacctccacagtgagtgttacagctcttaaaggtggtgtgtctggagttgtttgttcctctcggtgggtttgtggtctcg<br>ctgacttcagcaatgaagccgcagaccctcatggtgagtattacagctcataaaggtagtgtggacccaaagagtgagcagcagcaagatttattggtaa<br>gaacgaaagaacaaagcttccacagcatggaaggggatctgagtgggttgccactactggctcaggtggccagcttttattctcttatttgatcccgccc<br>atgtccagctgattgg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	84433396	84433397	2000487	0	+	AC225230	NA	NA	LINE	L1	L1HS	attgctagtaaaaataaacagataaatagttccataaaataatatatgcataaacacaaaatcttagtacatttgccttaaaaattagcagtcaaatata<br>tttaatttatgctaattctacatataataatcagatataattcttttaaaggttaaagagctacaaaagaattgtcaatacaaaaatgttccaaaagatt<br>gcaaatattctgaaaggctataaatgagtgagaaaaataaatgataggcttttttgtcatattgtttctaatgggataccctgggaataatgtcgagact<br>gagctttgtaactccgtcattaatgaaataagagagaaataaatagggtatcactttaaatctgaaattttgttaaattaagttctatt<font color="green"><u>TAAAACAGATA<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGCTTT<br>GAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGC<br>CTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGA<br>AGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAA<br>AAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGA<br>ATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAACAAAGGCAAAGAAGTTGAAAACTTTGA<br>AAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAA<br>TGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAA<br>AAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAA<br>TGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACG<br>CCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGA<br>AAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACAT<br>TCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACAAGCAAATGTTG<br>AGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCCGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCA<br>AAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAAT<br>ATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAA<br>ACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCC<br>TAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAAC<br>TATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATG<br>GGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACC<br>TAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAG<br>TAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTACAACTCAGGATTAAGAATCTCACT<br>CAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCA<br>ACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGA<br>AAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATC<br>AGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGC<br>TAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTAC<br>CATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAG<br>GAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCA<br>CAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTA<br>TGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTC<br>AATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATAC<br>GCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACA<br>ACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTG<br>AATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCA<br>GGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAA<br>CCCCATCGTCTCAGCCCAAAATCTCCTTAAGCGGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATAC<br>ACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATG<br>TGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAAT<br>CAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACT<br>ACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAAC<br>TATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCA<br>TATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATA<br>TGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCC<br>TAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAA<br>ATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTAC<br>TCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGA<br>ACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTAT<br>GAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGT<br>TGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTAC<br>TGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCA<br>ACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTT<br>GTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAA<br>CAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAAT<br>GCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTA<br>TAATAAAAAAAAAAAAAAAAAAAAAGAATACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAACAGATA</u></font>aagattacaatgagacttaacctacata<br>aaaataaattaaggtactaaatggcaaaatgttagcaaacaacttggtttcatgtggactctatgcataatcacaaatgcaatctaaagtaatatttctt<br>ttatatttatttcaaataaatattgacttagtgtctctgatttagtagaggtgatggatccatatgagtcccttagaatttggattgtattattttgttt<br>ctttatttgaacatagtcttctttaagaatatctgatcaaagacagcaaggtgtataactacttttactacagttttagagttcttcatcctgtagtcaa<br>cccatttcttttccaaagagtagtgatggtcatatgaattaattaaaaaatggattcagtc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	98264303	98264304	2000488	0	+	AC203607	NA	NA	LINE	L1	L1HS	caaaagtatatataataatgatagcttaagggaattgaggttattctgatttgaaaaaaaatgtcttggtggtgacctaattacattttgcagaattatg<br>tcaggatttgaaagttttgactacgagagcagttatctttgttagttttcaagagctaggagagtcttaaatgtcttcaaatcattagccttagatacta<br>acatctggttaatggaaacttcccaacttgtagcccacttgaatctcttgtagacattggaaactaaatctgtgggaaaaatggacttacagaatttgaa<br>tatcaaatattcaaagaatttgtcttgctttttgattctctgtgcatatcactgtggcatacattaccatgctgaagataattcatt<font color="green"><u>GGTACTTATTCTT<br></u></font><font color="red">TTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCA<br>CTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCACTCCCCCCACCCCACAACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTG<br>TCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAAT<br>TTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCA<br>TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTC<br>ATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACT<br>AGTTTACAGTCCCACCAAAAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTG<br>GTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAACATTTCTTCATGTGTTTTTTGGCTGCATAAATGTCTTC<br>TTTTGAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATT<br>AGCCCTTTGTCAGATGAGTAGGTTGCAAAAATTTTCTCCCATGTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTA<br>GTTTAATTAGATCCCATTTGTCAATTTTGTCTTTTGTTGCCATTGCTTTTGGTGTTTTGGACATGAAGTCCTTGCCCACGCCTATGTCCTGAATGGTAAT<br>GCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTTTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGTAAGGAAGGGATCC<br>AGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGA<br>TCAGATAGTTGTAGATATGCGGCATTATTTCTGAGGGCTCTGTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTAC<br>TGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGGATTGACTTGGCAATGCGGGCTCTTTTTTGGTTC<br>CATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTGTAAATTACCTTGGGCAGTATGG<br>CCATTTTCACGATATTGATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTCTCCTCTTTTATTTCCTTGAGCAGTGGTTTGTAGTTCTC<br>CTTAAAGAGGTCCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGAAGCAATTGTGAATGGGAGTTCACCCATGATCTGGCTCTCT<br>GTTTGTCTGTTGTTGGTGTATAAGAATGCTTGTGATTTTTGTACATTGATTTTGTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTT<br>GGGCTGAGACGATGGGGTTTTCTAGATAAACAATCATGTCGTCTGCAAACAGGGACAATTTGACTTCCTCTTTTCCTAATTGAATACCCTTTATTTCCTT<br>CTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACACTATGTTGAATAGGAGCGGTGAGAGAGGGCATCCCTGTCTTGTGCCGGTTTTCAGGGAGTTCCCT<br>TTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCAC<br>GAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGTGGCAGCGAG<br>GCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCT<br>GCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGA<br>AGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACT<br>GGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACA<br>ACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAA<br>AAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGA<br>GCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAA<br>GAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCA<br>GGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAG<br>AAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTG<br>GAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACT<br>CCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTAC<br>CCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAG<br>AATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCA<br>CCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACC<br>ATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAAT<br>ATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGT<br>GCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAA<br>AACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATT<br>TATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACA<br>CCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTA<br>CAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCCCTCCTC<br>AGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCTGCTCAA<br>CTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGA<br>CACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATT<br>GACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGA<br>AGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAAT<br>AAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATAC<br>TACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAAT<br>CTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTA<br>CCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATC<br>ATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGG<br>CAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAA<br>TGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTA<br>AAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAAC<br>TGGAAGCATTCCCTTTGAAAACC</font><font color="green"><u>GGTACTTATTCTT</u></font>aaagatcttgaaagtcacagatttcagagcattgtatagacatccttattccccattcagaggc<br>atttcagtaactggctataagcatttcagtgtggcagttttaagagtatgtatattgatgtcagactatctgcattccaggcttaattttacccattact<br>acctgtgtgacctgggccaagttactttcctgaaaatgaggttaataaaaatatttacctcaagggttgtgatgattcagtgcgaatcatccatgaaaag<br>gaacaaacacattgtctggcagagattgaatgttgttttgttttgttacctattattattaggaggacagtgaaggggcaagtatggaggtactcctctg<br>aattttaaagtggataaaaatgt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	143704691	143704692	2000489	0	+	AC208106	NA	NA	LINE	L1	L1HS	atttgtgagagagaaaaaaactaaaaaagaaaacatgtaactgctgctcaactacagaacaaaatatgcacatatacttttacatatgcatgcacacaca<br>cacacacacacacacacacacacactgcagcatggtctaatgagattagaaactttgaaattctgtttatagctctaccacaactgagatacttgatctt<br>atacaaatcacctcacttcactgaagtccattcacttgcctgaaggagagattttttaatacctagagaagccactgtgagtatagtataatgtaggcaa<br>aagcaatttatagattgaaaaccactataccatagtcaaatgttatgaattagtagtaagtgcaatatgtgttgaggtgaggat<font color="green"><u>GAAAATCCTGCTTGCC<br></u></font><font color="red">CAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCA<br>CTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATC<br>TCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAA<br>AGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAA<br>AAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGC<br>AGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGT<br>ATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCAT<br>CAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAAC<br>GCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGA<br>GGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTG<br>ATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATG<br>AAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAA<br>TCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCA<br>AGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAG<br>TTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAAC<br>CCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGT<br>GAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGG<br>AAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGC<br>TAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGG<br>ATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACC<br>AAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTA<br>CATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGT<br>GACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGG<br>ATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACC<br>ACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCAC<br>AGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATA<br>ATGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGG<br>GAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACA<br>CATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGA<br>GCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAA<br>AGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGAT<br>ACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATA<br>GTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCA<br>ATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTT<br>AGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAG<br>TGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTAT<br>CTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATGGATGGGACGTATTTCAAAATAATA<br>AGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCT<br>CACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATT<br>GTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGA<br>TACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAA<br>AGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAA<br>CAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATC<br>AAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAA<br>AGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGA<br>TCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCC<br>CTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGA<br>TTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAA<br>AACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAAC<br>AGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAA<br>AAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATC<br>ATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGC<br>TGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATC<br>TAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTT<br>TATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAA<br>TACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAA<br>CCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCG<br>GGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTA<br>ACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAAATTATAAATAAA<br>ACAAAGAAGAATATGTGAGAGGAGCTGAATGTGCCCCATAAAGCCTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATCCTGCTTGCC</u></font>tattca<br>gtcactatgttgaatacctttgtagcctgaaatcgaattagaagttgcatacatacgcacataaggaaaaaaatatttcttgtttgaaatggttttatct<br>ttcaagataatgccttctacgagtgtgggtagaagagtggacagaacagtgattacctgtgtttaagaatggcgtatgagggtatatgctacctaaatca<br>gatgccaaagtcagactggagggaggcaggactcaatctatagatcacatattttactaaatttgattaaattctcaacttatattttctcatattttat<br>gcacatttctaatctttaaagtatgcaagggtcttatattgtgcattttagagatgcagagatgagttcaggaaaaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr7	96475902	96481994	2000490	0	-	AC209153;AC193157	NA;NA	NA;NA	LINE	L1	L1HS	aatgtcttataaatgaagtcatatagtatgtaacattttgagcctggcttctttcccttgatacagtgcctctaagtttcatctaagttgatgtgtcaat<br>agtttgttcctttttatcaatgagtagtattcaattatatggctgtaccatagtttgtttatccattcacctgttacaagaacaggtttttttttttttt<br>tccccctgggcgattttgaatactgtacaggcttttgagtgaacatacatttttgtttttctgagataaatactcaggaatacaaatgctgggctgtatg<br>ataactgcatgtttaacttcataagaaactgccaaactattttccagagtggctgtaccattttgcattccctccaacagtgtat<font color="green"><u>GAAAGTTCCAGTTGC<br></u></font><font color="red">GAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCTCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCACGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTTAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAATTATAAATAAAACAAAGAAGAATAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGT<br>TCCAGTTGC</u></font>tttgcatccttatcagcatttggttttgtcagtattattttcgctattctaataggtgcatagtaatgtttcattatggtttaaatttgca<br>ttttctaatatcgaataatattgaatatctctttatgtgcttatataccatttgtatatcatctttgttgaattgtctattgaaatcttttgcccatttt<br>tcaaaaatcaagtttttccttttactacagttgagcattgagaattcatcacataatctggatataagtttttgtcagaccatttttgcgaatattttct<br>cccagtcttcagcctgcatgttcgtcctctcaactttgcaaagcaaaagactttttaaattaatttttttactttttagataattgtagattta	UCSC;UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr17	68357410	68357411	2000491	0	+	AC207965	NA	NA	LINE	L1	L1HS	gacactatgtatttaacaagaggaaagatgattgggttaggaaagttgagcagttatttagaaatgagcacacgagctggggagacctctccagagaagg<br>cagtggagaatcaaagaatagagggttgtacaggagatgctttttgggaatggctgtttcaggtatcaattaaagtggaaaggtagggttgtttttgtaa<br>aaaagatccaagacaatggaggatttgcccacattagaacaggatgcaaactacaggacggcagaatgttacagaaacgaaaaatgtgtttcagagtgat<br>tggagttagcattctggacgtatttcttacagagttgactagcactattcattttccaccctccaacagttgctgaatgattttgtttt<font color="green"><u>AAGAAAAAATA<br></u></font><font color="red">AGGGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTA<br>GGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAG<br>GGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAAC<br>GGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGG<br>CGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTC<br>AAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGGAACCTCTGCAGACTTAAGTGTCCCTGTCTG<br>ACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAG<br>CAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGG<br>AAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAA<br>CAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATG<br>ATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAA<br>AAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGC<br>AGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAA<br>GAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGG<br>AACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAAGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCA<br>CAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAG<br>GTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCT<br>TAAAGAAAAGAATTTTCAACCCAGAATTTCATTTCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAGACAAGCAAATGCTGAGA<br>GATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAA<br>TGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATT<br>AACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACC<br>CATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAG<br>TCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTAT<br>CCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGA<br>GACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAA<br>TAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAA<br>AGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAA<br>AGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACG<br>AGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAG<br>ATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGA<br>GCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAG<br>CAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCAT<br>CAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAAACAGGAA<br>GAAGTTGAATCTCTGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAG<br>CCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGA<br>GGCCAGCATCATCCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAAT<br>AAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCA<br>AATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACC<br>CTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAAT<br>GGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGG<br>CAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCC<br>CATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACC<br>AACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGA<br>AGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAA<br>TATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACT<br>TTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTTACTTCAAACTAT<br>ACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATAT<br>CTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGT<br>AGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAG<br>AAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATG<br>GGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCA<br>TCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACA<br>GACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAG<br>ATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGG<br>TGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGG<br>GTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAAACTTGGAACCAACC<br>CAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTA<br>GGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAA<br>TGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGGTAGCATTGGGAGATATACCTAATGCT<br>AGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAA<br>TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAAATA</u></font>aacaaaaagtacttagcctcaaggaaaataacttagggattttctg<br>catcttgaaatgcatgcttgtttggaacaaacagccgataaaccaattctcttaattatacacaaactgcctcacaattatgtactaaccgaatcctgag<br>tggacttggtagacacttgctgcttatgaaagaaacactacgcagaggcaccgctcctcacttttcttaaagaaaaaaaatgcatgactttaaaaaaaga<br>gtttgaaaattctcagtgatcttgttccctcatttatttttccacaagctgtgtctaaattcaggcaaagttatcaacttaccatttaatgatatggtca<br>cttaaacaaagcataaccttaacagaccttcaattcaagcttg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	35879355	35879356	2000492	0	+	AC231951	NA	NA	LINE	L1	L1HS	aaaaaaatgaagtgtcgggggctcatgacattagtaaagtgtaagtattccatggtctgtgtcatgattaaacattcctacaaatgtataaaaaattatt<br>tgactttatactttcctgtaataagaaagaaacaatgcttagaatacctctttttgttctggaaatagcatattttactcttgggattttgttccaacct<br>atttatctagtgataaggaaagcttccagcttggagtggagtccaaagcaaaactagacctgtaagagaaacaggctgctgtaatacagtcctaaaacgt<br>catccatatgacctggcaggtcttaccatattagagtatgggtggtaggaaaacatccctagtggaatttatggcaaattcc<font color="green"><u>AAAAAAAAAAAAAAAAAA<br></u></font><font color="red">AGAGGTTGAGGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCATAAGACGGGTGACTTCTGCATTTCCATCTG<br>AGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCTCGAGCCGAAGCAGGGCGAGGCATTGCCTCA<br>CCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTGAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGC<br>TTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCGCGCTGATTGCTAGCACAGC<br>AGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAAC<br>TGGGTGGAGCCCACCACAACTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAACCAAAAAGACAGCAGTAACCTCTG<br>CAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAGGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTGGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCTAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATGTGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGACAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGACTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTTGGGACGGTGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAATAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAAAAAAA</u></font>aaagaatagcaatatagatccctagggccctggagcaaggccatttca<br>tctgcagaattaaattctagaccaatcaaaacagcatctagcactgtattttgtttcataaaggtgaaaaaaactaaccatgagacctcaaatgaccata<br>tgactaaatctgccattcatgagcataggtttgaaaagacccagcatcattctgtaatagaatggaagacacatccaggatttgacatgagtagtgtcaa<br>atactcatttgtacagataaactgtacaagcaaatgactcagaaacatttaatcaattaatgctgcattattacctcttccttagcccagaaaacaggca<br>cagtgttctggagaaaaatgcatatgccatactt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr13	52843774	52849794	2000493	0	-	AC208004	NA	NA	LINE	L1	L1HS	cgccttggcctcccaaagtgctaggattacaggcttgagtcaccgtgcctggccgagatcctcaattatagtggcagcatactgctttaggctccatgga<br>tgactaaactaatttcaaacatataatgctgtttactgtgaaatgccaactgaaagtcattgtttaattttatgtaatttacaatacttactatacctca<br>ataaaactataattattaagggctggcatcggttgctgagaggtggaaggagtacctctctgcagcgtgttagctcaggttcaaacaggacagggcctca<br>agttcagcagcttttcagaaaatggcctggatccccagcctgaatcatcatcccatggctggagaatgtggacaggttatttaattaag<font color="green"><u>AAACTAATGAT<br></u></font><font color="red">TGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAACAACGGCGCACCAGGAGACTATATCCCACACCGGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCTGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAACAGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATTTGAGAACGGGCAGACTGCCTCCTCAATTGGGTCCCT<br>GACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTAAGGGTCCTGTC<br>TGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGAT<br>GGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAATGGAACAAAGCTGG<br>ATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAA<br>ACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTAAAAACCAAGGCTCGAGAACTACG<br>TGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAGGGAAGTTT<br>AGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATG<br>TGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACA<br>GAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCC<br>AGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATAT<br>TCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCA<br>AATGCTGAGAGATTTTGTCAACACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAAT<br>CATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACA<br>TAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACACATCAGTGTGCTGTAT<br>TCAGGAAACCCATCTCACGTGCAGAGACACACATAAGCTCAAAATAAAAGGATGGAGAAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTT<br>GCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAATAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAAG<br>AGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATT<br>AATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGAATACCCAGGAATTGAACCCAGCTCTGCACCAA<br>GCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAC<br>TTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAA<br>TCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTT<br>GAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAA<br>AGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAAC<br>TAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAAAATTGAT<br>AGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATAC<br>AAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGACATGGATACATTCCTCGACACATACACTCTCCCAAGACT<br>AAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGAT<br>GGATTCACAGCCGAATTCTGCCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACT<br>CATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAAGCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAA<br>AATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTC<br>AATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAA<br>TTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATAT<br>CATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTT<br>CTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATC<br>TAGAAAACCCCACCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATT<br>CTTATACACCAACAACAGACAGAGAGCCAAATCATGAGTGAACTCCCATTCACATTTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGG<br>ATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAG<br>AATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAA<br>ACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCACGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCA<br>AACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCC<br>GCATATCTACAACTATCTGATCTTTGACAAACTTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCC<br>ATATGTAGAAAGCTGAAACTGTATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGGTGGATTAAAGATTTAAACGTTAGACCTAAAACCATTAAAA<br>CCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGA<br>CAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATATTCGCAACC<br>TACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACA<br>TGAACAGACATTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCAC<br>TATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACAC<br>TGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTACAACTAGAAATACCATTTGACCCAGCCATCCCAT<br>TACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCATTATTCACAATAGCAAAGACTTGGAA<br>CCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCC<br>TTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATT<br>GAACAATGAGATCACAAGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAGTGGGAGATATACCT<br>AATGATAGATGACACGTTGGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAA<br>GTATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTAATGAT</u></font>aaaccaagggctatgggaattaagaactatggctaaaaaagaaatgtttagagtgatgcaaaatggcc<br>gattaaaagcagctgcactccccagcactcaaggagaggaatgaaaaggggcaggtgaattcagcaccttcaactgagatacccaggttctcccattggg<br>actgactggaagaacagctcgccccatggagaatgaagaaaagtggagagagggtgtgatggcccagccgagagcagcgtggagccaaaggaacccccac<br>tcccagccaagggaagcagtgagtgattgtccaatcgtgctcaggaaacagtgcttctcctattgatctttgcaacccatggatcaggggatccccttgt<br>aagcccatgccaccagggcct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr10	91717647	91717648	2000494	0	-	AC204956	NA	NA	LINE	L1	L1HS	tggtcagctgaaggtatttctgtgttccagactgactgagagggctctaggggctaaaaagtttgaggcagttttcctggaactacacacctgggagaaa<br>taatcagattgaacaccaactgacacccatgcctcagcattctcttttcgctagatccataccgtaagttattacagcaggattaatgttgggcaataat<br>aagaaacctctggagaacggtgaaataaggggaaccaaggaccagtatggaattgggacataagatttcctctgagagttaagctctaagggaactgaaa<br>cacagatgtgcaaagttaccttaagacagaaagcctcctaaaccaataacatttgactctaatctaaatgggaaaattatcccacct<font color="green"><u>AAAGAAAACAGAG<br></u></font><font color="red">GAATTATAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCA<br>TCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGC<br>CTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATT<br>GCGCTTTTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCA<br>CAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTC<br>GAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACC<br>TCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAG<br>TGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCT<br>GTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGC<br>TGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAG<br>TTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGGCCAAATCTACGTCTGATTGGTGTACCTGAAAGTG<br>ATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAAT<br>ACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCA<br>GCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAA<br>TATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTACAGACAG<br>GCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAA<br>AATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCAC<br>ACATAACAATATTAACTTTAAATGTAAATGGACTAAATTCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTG<br>TATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGG<br>GTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAG<br>AGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACACAGGAATTGAACTCAGCTCTGCAC<br>CAAGAAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>GAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGA<br>GAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCACAGAAA<br>TACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>GATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGG<br>TTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAATAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTT<br>ATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACAACAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTGAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTCGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>CGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAGCCTCCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAACAGAG</u></font>acctcaaaaagactaatcgcagagactaattttgacactgtacaactaagag<br>agagagagtcctgattcaagaacgtgaggagattcacctacatagacaacatctgatttcaccatagtggaaatgtcagacatttagtacctaatgccac<br>aaaacaggggctggcaaactactgtccatgggccaaatctggctgaatcccattcttttaaataaagttttattggtaccacaggtgcatccatttgttt<br>acacatcatctatggctgcttttgcactacactatcagagttgagtagtcttgacaaaggttatatggcccacaaagcctgaaatatttactgcccagcc<br>ctttacagaagaagtttgccaacgcttgccataaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	110377895	110377896	2000495	0	-	AC210912	NA	NA	LINE	L1	L1HS	ctcagtggtcacaagggacagaaaccaattcgggctaactccagctcgaaggatgtttataaggtgagtgctgggcagcagctagggaagcaggcaggat<br>ggagccaggatagtccctgacatttatgtagcaggagctccatggccatcttgtcccggagctgagctggagtgaatccactccctccatttcccccatc<br>aatgagcctttcctcagagtcccaggaaggagagtttgcttatcctgactttgagcacttgcctgacaccaagactagggaaagacaggcatcccgatta<br>acattcccaccacagctcacacagtaggaaggaaaaaaaaaaaagtgtgccctgaggaagaggagagcgaggctgagggttctt<font color="green"><u>AAAACGTATTTACTTG<br></u></font><font color="red">GATAACTCGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCC<br>ATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCACACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTG<br>CCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATAT<br>TGCGCTTTTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGC<br>ACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCT<br>CGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAAC<br>CTCTGCAGACTTAAGTGTCCCTGTCAGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAA<br>GTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATACAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGGCCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCACCCCAGAATTTCATTTCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGTTGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAGCCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGGCAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTATCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACAACAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAACTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTCGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATACCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACGTATTTACTTG</u></font>agcaacactgaataagctacttacctgatctaagcctcagtttcct<br>cacatgtaaaatgggcatgctgttagtatttaccataaaaggttgttatgagaacttatcagataaaggagggcagatgcttattgagtgcccagctcaa<br>tgcatcttagttattgttgttaggagctccgattcttgattggcccaaacctttgttcagaggtgccccaccccctgtctggctgggctgctgtttccct<br>gcaggctctggaggggccgtgttgtcacggggtgatctggatcagcgtgcccacttatggcgcatggacaggctctgtggtcaccactcctgccaagttc<br>caacacagtaggggcagagacacctgctgtcatgaagc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	92869805	92875913	2000496	0	+	AC223418;AC208150	NA;NA	NA;NA	LINE	L1	L1HS	catggaaaagagctcatcatcactgatcattagaaaaatgcaaatcaaaaccacaatgagataccatcttatgccagtcagaatggcaattattaaaaag<br>tcaagaaataaaagatactggtgaggttgcagagaagtaggaatgcttttacactgtcggtgggaatgtaaattaggtcaactattgtggaagacagtgt<br>gcaattcctcaaagatctagaaccagaaatacgatttgacccagcaatcccattactgggtaaatacccaaaagaatataaatcattctattatagagat<br>acatgcatgagtatgttcagtgcagcacacttcacaatagcaaagacatggaatcaacacaactgcccatcaatgatagacta<font color="green"><u>aagaaaacgtggtacat<br></u></font><font color="red">TGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGACTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAGGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGAGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACGTGGTACATATACATAACGGAATACTGTGAAGCCATAAAAAGGA<br>ATACCACCAT</font><font color="green"><u>aagaaaacgtggtacat</u></font>taaaaaggaacaagatcatgtcctttgtagggacatggatggaactggaagccattatcctcagcaaactaat<br>aaaggggacacaaaaccaaacaccgcatgttctcacttataagtgggagctgaacaatgagaacatatggacacagggaggggaacaacacacactgggg<br>cctgtttgggggtggggtgggaggagggagagcattaggaaaaatagctaatgcatgctgggtttaatacctaggtgatgggttgacaggtgcagcaaat<br>caccatggcacgtttacctatgtaacaaacctgcatatcctgcacatgtaccctggaacttaaaataaaacaatgcacaacctttcccaaagaaagtttt<br>cttccagaat	UCSC;UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA; TSD unavailable	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr22	28455917	28455918	2000497	0	-	AC215719	NA	NA	LINE	L1	L1HS	gaatgagaacacttggacacagggtggggaacatcacacaccggagcctgtcgtggggttgggggatgggggaaggatagcattaggagaaatacctaat<br>gtaaatgatgagttaatgggtgcagcacaccaacatggcacatgtatacatgtgtaacaaacctgcacattgtgcacatgtaccttagaacttaaagtat<br>aataataacaaaaggatctttttaaaaaaaaaagttgagtactttcattaaatattagttctttcaataaatgttaaggaactaaatagtacaatattaa<br>ggaactaaatagtacaattaaaggacattgttaaatggattttttaaaaagcagaaccaaaatctctgatatttacctatagatt<font color="green"><u>GAAAATAAATGGGTA<br></u></font><font color="red">AAGATGTCTGAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>TAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAACGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGACCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACGTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAACGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCATATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAAAAAAAAG</font><font color="green"><u>GAAAATAAATGGGTA</u></font>gaaaacgatataccat<br>gtaaacggtaatcatacaggtggctggagtgccttcagtcagattaaatattaatttaatatttaataataccaagagtattaccagaggtaaagaggga<br>catttcttaatgataaaagaatcaatttaccaagaagacattaaaagccataaatgtatatttacctagtgaccaagtttcaaattacatgaagcaaaat<br>ttgataaaattaaaaagaaacagatatttctgcagttgtatttggcaactttaacaccactctgtattgataaataatagctataattagaaatttatag<br>aataattagaaaaaatacaagccagtaaaacatagatgatacaaaaacaccaatcaccttgacctaatt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:TTC28:NM:001145418:12/23	
0	chr16	16934379	16940414	2000498	0	-	AC193110	NA	NA	LINE	L1	L1HS	gaactcaccctttttccgcctttttcttctatctgggccttcagcggattacgccatgcccacccacattgctgagggccatcttctttactcagtctgc<br>tgatgcaaacactaatctcttttggaaatgttttagcagatatactgcaaaacaatgtttgaccagctatctaggcatcccttagcccagttaacaaata<br>aaattaaccatcacaatgacgtatgcacagtgctattcattgcagcattgctaatattgaagcattgctaatataaaagcaaaagaaataaagtaactta<br>aatttacatcaaaatggtctacacttaaataatccctatagcggattttaagttatccgtgcagtggactattatgtagcagtgg<font color="green"><u>AAAAGAATTAAGCTT<br></u></font><font color="red">GAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCAT<br>CTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAG<br>GGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTT<br>AAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAAC<br>TGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACC<br>ACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGACTTAAGTGTCC<br>CTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGAC<br>CCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGT<br>TAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGG<br>GAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATG<br>GAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACT<br>TTGAAAAAAATCTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGA<br>AGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGA<br>GAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGG<br>AGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCGACATTCAGATTCAGGAAATACAGAG<br>AACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGA<br>GAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCA<br>ACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAGACAAGCAAAT<br>GCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCAT<br>GCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAA<br>CAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCA<br>GGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCA<br>ATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGC<br>TAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAAT<br>AATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCA<br>GACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTG<br>GAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCT<br>CACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAA<br>ACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGC<br>AGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAA<br>AATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGA<br>CCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAA<br>CTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAA<br>CCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGA<br>TTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCAT<br>TTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAAT<br>CCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAAT<br>ATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTC<br>AACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCAT<br>ACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTG<br>GCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAG<br>AAAACCCCATCACCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTT<br>ATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGG<br>GATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAA<br>GAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAA<br>AACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTC<br>AAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGC<br>CACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGC<br>CATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAA<br>ACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTG<br>ACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAATTTTCGCAAC<br>CTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGAC<br>ATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCA<br>CTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACA<br>CTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCA<br>TTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGA<br>ACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATGAGTTCATATC<br>CTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAAT<br>TGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACC<br>TAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAG<br>AGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAATTAAGCTT</u></font>aattataggtactgagatggaagcttttcagcatgtattatagtggta<br>ggggaaaaaaggaaattacaaaagaaaatgtatactaccacttatgtaaaaatgcatgtacatatttaagtaaatgcagagtaaaaggtatggttaccag<br>aagtgccacagtatttcttgaaggcaagctattcaatgaatatgattcatatcaatgaatatgattcatgtcaatgaatatgattattacatgggtgctc<br>cctctgggtattgatgttagaaaatcgcccttggcaaatattcctataatcacagacaatttaggacctggtagaggttttggaaaatatcaagtccaac<br>cccttactctacagatgagtaaactgaggcccaggtt	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr12	28226428	28226429	2000499	0	-	AC205793;AC210893	NA;NA	NA;NA	LINE	L1	L1HS	actgcctctgtaaattattaagtttactgagcctctgtacacaaagtagtgtaaaggtttgttttattatgatcactgttatttagtattctattgtctc<br>aagaaaagtctgatccatagaatgccatccagaggagggtcaaagcataaagaaatatctacttactaaattgagattaaaaataaagataattatccta<br>ataatttaattttaaaattgtttttaaaaatagacatattaaaatgtatgtctttatcatgtacaatatgatgcctgaagtataaaatattgtggaatgg<br>ttcaatcgagctaactaacaaatgtgttagcacacctagtttttttgtggtgagaacacttaaaagtcattctcagaattttttt<font color="green"><u>AAGAATACAGTACAT<br></u></font><font color="red">GTAGGGAGGAGGAGCCAAGATGGCTGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTG<br>AGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACAGTGCGCGAGCCAAAGCAGGGCGAGGCATTGCCTCA<br>CCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCATCCGAATATTGCGC<br>TTTTCAGACCGGCTTAAGAAACGGCACACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGC<br>AGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAAC<br>TGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGACACAGACAAACAAAAAGACAGCAGTAACCTCTG<br>CAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGG<br>TCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAATAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCATCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCAATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGA<br>TTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTGCCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACT<br>TTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCA<br>GCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAATAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGA<br>TCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCAT<br>CAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGACTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAA<br>AAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCA<br>ATACAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAG<br>ACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTC<br>AGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACTTATTCCAAA<br>ATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAC<br>TCAGGATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAAT<br>AAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACTCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAT<br>GCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAA<br>GGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGAT<br>CAACAAAATTGATGGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGAT<br>CCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACA<br>CTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAG<br>TCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTCCTGAAACTATTCCAATCAATAGAAAAAGAGGGA<br>ATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGA<br>ACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGAT<br>GCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAA<br>GCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAAC<br>CCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTACTATTCAACAT<br>AGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGAC<br>ATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAA<br>AATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGG<br>AATCCAACTTACATGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCA<br>TGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATTGCAACAAAAGCC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAAAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>AAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTCCACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>TATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGAAACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGAATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAATAAAAAAAAAAGAAAAGAAAAAAAAAA</font><font color="green"><u>AAGAATACAGTACAT</u></font>taactacagtcatcctgctatacaatagatcactggaact<br>tactcctgctatctaactgtaaatatgtattctttgaccaacatctccccaacccccaattacttcagcctctggaaaccaccattctattctctattct<br>gtgaggtcagcttttttagattacacatgagtgagatcttgcggtatttgtctttctgtacctagcttatttcacttaacacaatgtcctccagactcat<br>ccatgtcattgcaaatggcagaattttccccttttttggctaaacagtattatattatgtatatacgccacattttttaaatccatttatctgctggtgg<br>acacttgagttgcttccatatcttggctattgtgaatagtgcggc	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr4	88268261	88274298	2000500	0	-	AC213228	NA	NA	LINE	L1	L1HS	ggaagggcctaaagattggtcctgacatatgaacctctttgaggctaagctggtactaaagtagaccccaaagatgaagttggttttaatatagaaactt<br>attacttctaattagaagagagaacatgttcctcgttaaatacctgtttacatttcagacaccaaataaaatgtcattttcttaaacctcacaacaatac<br>ttttggggagatgttattagtccctcttcagtagatgagagagatctgaggtttagagaaattaaattacaagttatataccctttggcccagtaatccc<br>cctttatgaatctacctgagggagataattatccaaaagtgaaaatatgtgtgcccgaggatgcttattgctgatttgctgtt<font color="green"><u>AAAAATCCAGAATACTA<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGGAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAATTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACACTGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGG<br>AAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAA<br>AAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACT<br>TCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAAT<br>GCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTA<br>GCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAA<br>AAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAAT<br>TGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCA<br>ACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGG<br>ACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAAC<br>CACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTA<br>CACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCC<br>CATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTG<br>GAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCATATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATA<br>TCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGA<br>ATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGGAGATATA<br>CCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTT<br>AGAGTATAATAAAAAAAAAAAAAAAAAAAAGAAAAAAAA</font><font color="green"><u>AAAAATCCAGAATACTA</u></font>aaaacaaccctaaaatcatcactaggagatgctattgctcccaa<br>taatcaatacaatttactgtttactataaaggtataatacagcataatctgggtttattggaattaaatgtaaatcaggtgttccaattatttttttaag<br>ctcagttatttttgttaaacttgaatttcaacaaatagtttttaaaattttttaaaaatatacatatatatattttttcttttagagacaaggtcttgct<br>ttgttccccaggctgatcttgcctcagtgtcccaagtagctgggctataggcgtgagctgccacacccagcttagcacacttttaatctttgccagtatg<br>ataggaaaaaaacagtacttccatgttatattaatatga	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:HSD17B11:NM:016245:5/7	
0	chr12	65689254	65689255	2000501	0	-	AC216902	NA	NA	LINE	L1	L1HS	caataaccttgtgactgatataatttatcacctgaatttgtagtaaattccttttttcctaggttcttattcttatagaatgctagcaacattttatatt<br>ccataattaaaatattatttgcttttaggttattctatataggaattttacagcctcccaattatgcttctttgtaatcctcctattaattaaatgttgt<br>tttgcaagggagagttaacatgttatataatagtctttaatttcctcagataacagaagggctcaggaaataaacagccatacatctttccctaccaaaa<br>aaaaaagggagacatcaactcaaaaatgtactttagccaaatgatgtatgaatcaaatatccttaaggatagttaaattaacatt<font color="green"><u>AAAAGTTGTGGTGGT<br></u></font><font color="red">GAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATC<br>TCTCTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGG<br>GGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTA<br>AGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACT<br>GCAAGGCGGCAACGAGGTTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCA<br>CAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCC<br>TGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCTGACTCCT<br>GACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTC<br>TGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGAT<br>GGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGG<br>ATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAA<br>ACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACG<br>TGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTT<br>AGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATG<br>TGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACA<br>GAGAACGCCACAAAGATACTCCGCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCC<br>AGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATAT<br>TCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCA<br>AATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAAT<br>CATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACA<br>TAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTAT<br>TCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTT<br>GCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGG<br>AGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATT<br>AATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAA<br>GCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAACTGACCACATAG<br>TTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAA<br>TCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTT<br>GAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAA<br>AGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAAC<br>TAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGAT<br>AGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATAC<br>AAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACT<br>AAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGAT<br>GGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACT<br>CATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAA<br>AATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTC<br>AATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAA<br>TTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGAGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATAT<br>CATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTT<br>CTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTATATC<br>TAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATT<br>CTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACA<br>AGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAG<br>GAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGA<br>AAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGAC<br>TTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAA<br>TGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCT<br>AGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATA<br>AAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAA<br>TTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGC<br>AACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAG<br>GACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAA<br>CCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTT<br>ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATC<br>CCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTT<br>GGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCAT<br>ATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGG<br>AATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATAT<br>ATCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACT<br>TAGAGTATAATAAAAAAAAAATAAATAAATAAAAAAATAAAAAAAAAAAA</font><font color="green"><u>AAAAGTTGTGGTGGT</u></font>agtcactgaatgcagtaaatgtatgatttaatgaa<br>aaagataaaaataatccttaaaagggagaacgtataatacaaaatcatatagaatgtcaactattcgacaatagtcatgtggatctacaggacccactct<br>agctaacaaaggcaaggcagagaaaaagacaagaatcctaagtttctcctgtagaaaagagtcaaatgctactgcattttttactttttcaatttaatac<br>ttaggtaaggctcaatgatgtttttagatactttttcaaggtcatagaacctaaaataaaccctatgaaagaaaaaagtgaataaaacatggaaggtcag<br>gcacagtggctcacgcctgtaatctcagcactttggcagttgcggcagga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:MSRB3:NM:001031679:1/7	
0	chr6	108982610	108982611	2000502	0	-	AC215798	NA	NA	LINE	L1	L1HS	aatacacccagttgacagtgatgacccagattcagtcctatctctgccactgaccaaccatgtgaccctgaacaaatctaatttgtctgcaacaactgca<br>gttccccaccttcattatggctataatcatatccaaaccatctctgtacagggatgatgtaagggtgacacatgatatatttcagaagccagtcatgcta<br>tgaagtcagggtgttcttattgctattataaaacacagagtccatggtggagagagttcatggcctgcagcaggctcattctaatctgtaaaatgcctcc<br>tgcagtaaaagggaggagctgatgaatctgtatgctccacatccggaacagtacctgcaggccagatgagtttttatttgcacgtt<font color="green"><u>AAAGACAAAAGATA<br></u></font><font color="red">GATAGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>TCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACATCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCACTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGTATCTCATAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGACAAAAGATA</u></font>ctgcctgatgctactgtccatatattaaatatggacaatcctaaaagttatatatacatatatatatatttgtttaaattggcaatca<br>cgaactgtattcatgtagaagatacaaacacatgcttctaccagaatgttccccccgccgcccgagacagagtcccactctgtcacccaggctggagtgc<br>aatggcttgatctcggctcactgcaacctccgcctccagggttcaagtgattctcccacctcagcctcccgagtagctggggttacaggtgcgtgccacc<br>acacctggctaatttttgtattttcgtattttcttttttttatttgagatagagtctcgctctgttgcccaggttggagtgcagtggcgtgatctcgg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:FOXO3:NM:201559:2/4	
0	chr4	112628974	112628975	2000503	0	+	AC226005	NA	NA	LINE	L1	L1HS	acaccaccatcaaactaaaaatcatatacactgcttaaatacttataaactagaaaatatatcataggaaaaatgtgaccactaaattgtttgttgaata<br>acatgcctataaaaagaaaataatttagatttaagctgatagttacatagagtaaaagaaatatttggatgtcctttgagattattcatttcaacaaagt<br>ctgtcatgcccaataagtaccaaatgacagtgtgggaacatgtgaaactgaaactggactgttaaagaaatcttagcagaaatatggaaaatcagaatat<br>gaaatgtacaaaccccagctaagtcatagactatcattttcattatctgtcacctgacagcagattatctactcctaaactgtgtt<font color="green"><u>TAAAGTATCTCATA<br></u></font><font color="red">AGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGT<br>TCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCG<br>CAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCG<br>GCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATC<br>AAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCC<br>CACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGT<br>GTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCC<br>TGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGT<br>CTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGA<br>TGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTG<br>GATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAA<br>AACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTAC<br>GTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTT<br>TAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGAT<br>GTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATAC<br>AGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGC<br>CAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATA<br>TTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGC<br>AAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAA<br>TCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACAC<br>ATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTA<br>TTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGT<br>TGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAG<br>GAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACAT<br>TAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCA<br>AGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATA<br>GTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGA<br>ATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTT<br>TGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGA<br>AAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAA<br>CTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGA<br>TAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATA<br>CAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGAC<br>TAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGA<br>TGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC<br>TCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAA<br>AAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTT<br>CAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAA<br>ATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATA<br>TCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGT<br>TCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTAT<br>CTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCAT<br>TCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTAC<br>AAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTA<br>GGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGG<br>AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGA<br>CTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATA<br>ATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGC<br>TAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCAT<br>AAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAA<br>ATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTG<br>CAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAA<br>GGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAA<br>ACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTT<br>TACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT<br>CCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACT<br>TGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCA<br>TATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGG<br>GAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATA<br>TACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAAC<br>TTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAGTATCTCATA</u></font>aacttaaatgatgttaagggcaaatgtttatattaaagtatc<br>cataaaaagaactaaatttgtaaaaatgagactcaaaataacttacataattttaatacaaatcatttaaaattgaattttgcttagagaagagttttct<br>aaaaaggaataatgaaaaactgtatttatttatgttttttaattattaatttttttttttttgagacagagtccactctgttgcccaggctggagtgcag<br>tggtgcaatctcggttcactgcaacctctgcctgccaggttcaagtgattctcgtacctcagtctcctgagtggcagggactagaggtgcccaccaccac<br>acctggctaattttttgtatttttagtagagacaggctttcacc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr17	18776468	18776469	2000504	0	-	AC216987	NA	NA	LINE	L1	L1HS	agcctctactccaggctgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcgggagttcaagacca<br>gcctgaccaacatggagaaaccctgtctctactagaaacacaaaattaaccgggcgtggtgacacatgcctataatcccagctgctcaggaggctgaggc<br>agaattgcttgaacctgggaagcagaggttgcggtaagctgaggttgcggtaagccgaggttgcggtaagccgagatcgcgtcattgcactccagcctgg<br>gcaacaagagtgaaattctgtctcaaaaaaaaaaaaaaaaaaaagagcctctactccaatacttggttatttccacccgtt<font color="green"><u>AAGAACACTGAGTGGCTGG<br></u></font><font color="red">GTGGATTGAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCGGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATGTAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTTTTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGTATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACTGAGTGGCTGG</u></font>acacggtggctcatacctgtaatcccac<br>cactttggtaggccgaggcgggcagattgcctgaggtcaggagttcaagaccagtctggccaacatggtgaaaccccgtctctactaaaaatacaaaaat<br>tagccaggcgtggtggcgccaactgtagtaccagctactcgggaggctgaggcaagagaatcactagaacctgggaggaggtggttacagtgagctgaga<br>ttgcaccactgcactccagcctgggtgaaggagtgggactttgtctcaaaaaaaaaaagaaagaaagaaggaaaaacactgaaagaacatgtaaaagtca<br>gcagttatgtcagaaaacttagttttctaaattctaaattggtaagatatact	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PRPSAP2:NM:002767:5/12	
0	chr13	41006644	41006645	2000505	0	+	AC217325	NA	NA	LINE	L1	L1HS	acttgaaaagagaaagaatttcacacttgctagcccagcataaccacccacccttgaatgtcagtaaatgaagaagccaaaaatggctctttaacagaca<br>tccccagggagggtaaggttgtgtctgcagccagaaatgttgcttcctttggtctaagtcagtaatattcagatcacagctctccagctgcaagcagatc<br>tgttcagatgcaaactgtggctggtgaagcccccactccctttctcttctgaaatatgtttcacctctttttccagggtaggaccaagtgatgctttcat<br>tcaatggtaattataaatatgactcttggcacatttaactgtaagagtcattgctatgagaccagatttagctactctaatat<font color="green"><u>AAGAATGACTTTCACTC<br></u></font><font color="red">CGTCTCATAGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGTATCTCATAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGACTTTCACTC</u></font>tcatcttatccgggcctcttagcaaaccagaacctaagctagttattggaccactggccatg<br>atgggatgagggaatgaaatgtcttactcccttcctatcctgttcataccagcttcctcacagaatgagatttttttaagaagggaataatctcacacga<br>gctactataaaccaggtagctcaggactttctggtcatctgcactgacactgtcccagctgagattcagaatagttaagtaacgtgtcagaggtcactca<br>gcaataaataccaaagccatggctccaacccgattctgttgtgctccaaagtgcatgacctttccaccatgttgtgctgcctgacggttttcttaagatt<br>ctcagggactatggcagttaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:LOC646982:NR:024506:5/6	
0	chr14	86952525	86952526	2000506	0	-	AC203587	NA	NA	LINE	L1	L1HS	tttgtaattgaaattttcttttaaatacattgtttaattgtttgctgcttttatattgaagttttaactatagtgcaatgcaaccaactgtgacctgcct<br>tcaggataaagctgaacaaatgagaaattcgttctttccaaattttaacaaccttccaaaggtagcctacttttgttcactcactttttttgtaagtgta<br>tctatgcggaaaaaaaaaaaaatgctcttttagtagtttactccactatgccagtacagaactcttgcaatgatagttttttataattagcaaatagaaa<br>atatttttaaagtatttgggaagaaagaacatttaatttagttatagaaaatgaatttcacaaataatactgttacctattcac<font color="green"><u>ATAAAAACTAAGCACA<br></u></font><font color="red">GACCTTGGAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCC<br>ATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTG<br>CCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATAT<br>TGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACGATATCCCACATCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGC<br>ACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCT<br>CGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAAC<br>CTCTGCAACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAG<br>TGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGC<br>AGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGCAG<br>ATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGC<br>AACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACAATCAAGTTACTCTGAGCTATGGGAGGACATTCAAACCAAA<br>GGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCA<br>AGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAA<br>GCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGT<br>GTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTC<br>AGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAA<br>AATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGA<br>GAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAAGTAAGCTTCATAAGTGAAGGAGAAATAAAAT<br>ACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCTTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTA<br>CCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATAACCAGCTAACATCATAATGACA<br>GGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACC<br>CATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACA<br>AAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGA<br>TCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACT<br>TAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAA<br>CTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAAAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCC<br>AAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAG<br>AACTCAGGATTAAGAAACTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGA<br>AATAAAGATGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTA<br>AATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGGGCAAACACATTCAAAAGCTAGCA<br>GAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGG<br>ATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAGAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCG<br>ATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATA<br>CACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAG<br>AGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAAGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGG<br>GAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGAT<br>GAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGG<br>ATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAA<br>AAGCCTTTGACAACATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAA<br>ACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAAC<br>ATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACG<br>ACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACA<br>AAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTA<br>GGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTC<br>CATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTT<br>CTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGC<br>ATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAG<br>AGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTG<br>CTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTT<br>AAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAAATGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAATAAAAAAAAATAAAAAAATAAAAAAA</font><font color="green"><u>ATAAAAACTAAGCACA</u></font>ttttgtcataccttagtgattaagtaaaag<br>acatataaaataagtatacaaattagttggaagattctacttctgcctaggatgtatatgcttgaaaggccactgtttcccccttaacagcaaggaaaga<br>ccagataatataacatttcttaattgtgtcaaagagatgagctaatggagctattgcttatcctgaaatgtaaagcaaggtaggtgtctccaaggagagc<br>aaggccagaagttctgactcactgtggcagagcacagaaagaggaccccctgtacgatctggaaaaagaatttagatgagataggtaattgttgctaatg<br>tccaagggtgggctatcatgaaagtatagaactgcctacctaaaagccactcat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	79929389	79929390	2000507	0	+	AC209201	NA	NA	LINE	L1	L1HS	atgatggtgcatacctgtaatcccagctacttatgaggctaaggcacgagcatttcttgaatccgggagatgggggttacagtgagccaagattatacca<br>ttgtactccagcctgggagagcgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaagactgatgtggaaagagtattgcaagagaggtaacaagaa<br>caggcccctgatacccaaaataagcatggcatgaatggggtactcaaagtctttcattctgtggaatcggagatgatgactgagtgagtcgggggttgca<br>gtgcaaactgtgatctgtggcccaagtcctgactgctgtctgcttttgtatggcctgcctttttacatttttacatgattttttaaaaat<font color="green"><u>AAGAAATTGA<br></u></font><font color="red">AGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGG<br>GTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGA<br>TTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAA<br>GCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAA<br>AATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCAC<br>ACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTG<br>TATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGG<br>GTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAG<br>AGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCAC<br>CAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>GAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAGGCCTACAAGA<br>GAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAA<br>TACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>GATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGG<br>TTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTAT<br>ATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAAGCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAAGAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>CGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTGATAGGT<br>GGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAAGAA</font><font color="green"><u>AAGAAATTGA</u></font>actgtataccatgatgtgtgaaaaatatgagattcaaatttcagtgttcataaagttt<br>tattagaacatagccatacccactttattttcatgttgtatatggctactctcatgctacaatagcagagctaagtagttgcaacagagaccatagggtc<br>tacaaaacctgaaagatttgctgtctggccttttacagaaaaaaaagtgtgctgactcctgctgtagaggatgagaggttgctatagagttagatcatga<br>aggaccctatagttcacattgagagatttttattttgattctgaaaggcaatggggagtaactaaagggttttaagtgccttcatatttcttaggttggc<br>tgttagttaatttgcctcctttcatattttct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:CTNNA2:NM:001164883:2/17	
0	chr3	151688103	151688104	2000508	0	-	AC216905	NA	NA	LINE	L1	L1HS	gtcttctgagttccctgactcttctttgatctgaggtagttttcctgatgtgctattaataaggaagaaggtgagaagaagagtggtgaagataagaaaa<br>tatcaaacaactattttagaacaagtctgagtcccttctttaaatttgttgtgttgtagtttttaaatgcagtctatgaagtcagtcattaaattaaatg<br>tgatcaaatatgaatcttttataacaattttattatccccttagattttatatttattgtttttgctgttgtttgtttaggcagttatcaagaatttaag<br>aaaagaattttatcttttaaaagtgaaattataatttttcacaatgttagtatatgagcagaaaagaacatgtgcaacactatat<font color="green"><u>TAAAAAAGAAGAGTA<br></u></font><font color="red">GGAGAGGAGGAGCCAAGATGGCTGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATTGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGACACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCAAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACTGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAGCTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAATCTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGCTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTGGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGAAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATAC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACTTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCC<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATGGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTCCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACATGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAGACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGGTGGGA<br>AAACTGGCTAGCCCTATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATTGCAACAA<br>AAGCCAAAATCGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAAAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCTATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAACCATAAAAAATGA<br>TGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAATTAAAAAAAAAAAAAAAAAATAAAAAAT</font><font color="green"><u>TAAAAAAGAAGAGTA</u></font>tgaattagaaaaatattcctaatttgcagaggta<br>aatcttttactctttctagtcccaaagtccaaattcttcctctaaatctttgtttacgccggggactttgcctaacataatctctgttttttaatttaaa<br>aaatgagaattcttgtactatacaatcctaatatttctttttagtgttaatattttatttttaatatcatttaagttgttatagaatctgactatgaagt<br>cagaggattaaataccatgaggtcatagagaaacaatgagttacatggtgcaaataccaaaaccacaaaggagctgatacattaatttttttcatatttt<br>ggctagaattataatttaaagagagatccaaattacattaatttatttaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	66024189	66030267	2000509	0	-	AC225824	NA	NA	LINE	L1	L1HS	aattaaaagtctggtggcttaatatacccacatgaagtccgacttcagagacaagatttcctatgagttctactcaagttggagtatcacaaatatgatt<br>atttgtactactatgtcataaatccaaatagtagtataattttaatatatgtggcttggactttggatgaaaacctacctgaattaggcatcaggagtgt<br>tgggtgccaggctaagctcttccggtaatcagctgtgggacttgggttttcaacactctagacctcaggttcctcatctacaaatcagactgttagatgg<br>tctctacaacccctttcagagctgcctattattctgagagatgtaatttaaaatggaaaccacactttaccacaaagaatagtgt<font color="green"><u>AAAACATTAAGAAAC<br></u></font><font color="red">GGATTCACGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCATGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCT<br>GAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCACGCACCGTGTGCGAGCCGAAGCAGGGCGAGGCATTGCCTC<br>ACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATACTGCG<br>CTTTTCTGACTGACTTAAAAAACGGCGCACCACGAGATTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAG<br>CAGTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTTGATCAGGTAAACAAAGCAGCGGGAAGCTCCAAC<br>TGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTG<br>CAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGCTCTCCCAGCACGCAGCTGGAGATCTGAGAACCGGCAGACTGCCTCCTCAAGTGGG<br>TTCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGAGCACCCTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACG<br>GAACAAAGCTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAACGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGGGGAGAATGGAACCAAGTTGGAAAAAACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAAGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCATCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAGGTGAAGGAGAAATAAAATCCTT<br>TACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATGCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATGCTCCAATGAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGA<br>CTCCCACGCATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGATAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCAACCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATATGTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCAACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAGTAACAGGAGCTGAAATTGTGGCAATAATCGATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCTGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGTGATG<br>CAAGGCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAAGAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATTAGGCAAGAGAAGGAAATAAAGGGTATCCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACA<br>TGATTCTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTCATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTCAAGTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATT<br>ACACTACCTGACTTCAAACTGTACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCGCATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGGAAGCTGAAACTGGATCCCTTCCTTACACCTTACACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATGACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGA<br>GAAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCCAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCATAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTCTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCA<br>CTCATAGGTGGGAACTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACAAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAAAGTATAAAAAAAAAAAAAAACAAAAAAAAAACAAAAAAAAAAACTTCTGATTCAAAAAAAAAAAA</font><font color="green"><u>AAAACATTAAGAAAC</u></font>atgtc<br>tcatgactcatatctgagaattggcaccatatgataagtgagaattggcaccacatgataagtaaatggaaaaaagtgtttgtttattttacaacttact<br>atcaggaagaaaataaatgagtataaacagtgggtagtccagtaaatttgtttttcacactacaagtttgtcatcagaatttttgttctttatacactga<br>tatcacaatggttctttaggatttctagaaatcagtacactgtttggaaccctcatgatttaattatattaaatgagtacaaattcctccctgcttttta<br>tgctacctgttcttgatataagatgttctcataaaataaactcaagggcaagttttatagtcaagatgtgtcacagatac	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:LEPR:NM:001003679:2/20	
0	chr2	173179997	173186104	2000510	0	+	AC217416	NA	NA	LINE	L1	L1HS	aatttctttgtgtaggatctgtgttaaggtctttgcatgtttagtagaattctatttccaactgcaaaagtctttttagcagaatctttttttttttttg<br>agacggagtcttgctctgttgcccaggctggagtgcagtggcgcgatcttggctcactgcaatctccgcctcccaggttcacaccattctcctgcctcag<br>cctcctaagtagctgggactacaggcgcccgccaccaagcctggctaatttttttgtatttttagtagagatggggtttcaccatgttaaccaggatggt<br>ctccatctcctgaccttgtgatctgcccacctcggcctcccaaagtgctgggattacaggcttgagccaccgcacccggcagc<font color="green"><u>AGAATCTTTTCTTTGTC<br></u></font><font color="red">CGCGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGACTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGTGTGCACGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCGCACCTGGCTCAGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACACCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCACCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACAAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTCGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGTTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAACGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCAACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAGAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTAAGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATACTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCAGTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGCAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTCA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATTAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAAGGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAATAATAAAAATAAAAATAAAAAAAAAATAAATAAAAAAAAAATAAAAAAAAATAAAA<br>GAAAAAAAA</font><font color="green"><u>AGAATCTTTTCTTTGTC</u></font>ttccttttatttaaaaaaaatcaaaatgaagccttttcagtgcaaaattttcagaaaaatagctctcttttcca<br>ttgcaacattgtgctgagaacatgcgtgtcttgattctgcctctacttttcaacgcatggcagctaccttagttcaggttcttatcgtctctttcattat<br>tgtaattacatggctacttttcttacctccattctcattccctttcctatccatcagccacactattgttaaattgaactttgaaagtacaggtctaaga<br>aagttgacgacacacagccaatgatgtgtagaagcaagcaatctcatagatgttgcgggaatgaattagcgcagcctcttcgaaaggcaatgtagtaatg<br>tctatcaaa	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	147141638	147141639	2000511	0	-	AC216136	NA	NA	LINE	L1	L1HS	atgttacattcatgtggaagtggagaccacctgtcttcggggaagttaggcctctccttttccccaggggatgaactgtgattagactaaaaccagtgtt<br>ggtgattctgttccccttcaccagatagaattctggccaatgaggccagatctgctgagagaacagctaatgtctaaggatcaatcttttcacgtaaggc<br>ctttatttcagctgtcatcccagtatgaggcctaaaaccatggcactcatcctgaaactgtgcgatgtcaaaggaatgaaatcccaactcgctgatgatg<br>gcggagcaggaaaatcgaaaaatcttaggatctagatgatgtcattgaatggcttcacccaaagcagaaactgtgcctccacactt<font color="green"><u>AAGAGAGAAAATTA<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGG<br>GTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAG<br>CGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGAC<br>CGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGA<br>TCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAG<br>CCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAA<br>GTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACT<br>CCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCT<br>GTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGC<br>TGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAG<br>TTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTG<br>ATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAAT<br>ACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAAGAAAAAATGTTAAGGGCA<br>GCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAA<br>TATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAA<br>GCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAA<br>AATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCAC<br>ACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTG<br>TATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGG<br>GTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAG<br>AGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACAC<br>ATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCAC<br>CAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACA<br>TAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAA<br>GAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTC<br>TTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGA<br>GAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAAT<br>AACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATT<br>GATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAA<br>TACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAG<br>ACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCA<br>GATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTA<br>ACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGC<br>AAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGG<br>TTCAATACACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACA<br>AAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGGTATCTATGACAAACCCACAGCCAA<br>TATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAA<br>GTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTT<br>ATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGC<br>ATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTT<br>ACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGG<br>TAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATT<br>GGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCT<br>GACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAA<br>TAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTG<br>GCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACC<br>ATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACA<br>AAATTGACAAATGGGATCTAATTCAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTT<br>TGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCG<br>AAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCA<br>AAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACT<br>TTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCC<br>ATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGA<br>CTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTT<br>CATATCCTTTGTAGCGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGT<br>GGTAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGA<br>TATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAA<br>ACTTAGAGTATAATAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAAATTATAAATAAAACAAAGAAGAATATGAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGAGAAAATTA</u></font>agtgtctttattcattaagtttctgttaatcagtttttctgatacttggaactaaaacaatcttgatgcatacagtg<br>agcaaagacatatgaataaagatatccatcaaaaccatttatgaaaaaaatttaaaaagtaaatacccataaataagaaactggttaaatcaatcatgcg<br>acctctagacaatggactgtcatgaaatcattaaaaacaagctctgtggctgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggc<br>gggtggatcacgaggttagaagattgagaccaccctggctaacacggtgaaaccccatctgtactaaaaatacaaaacaaaaaaattagccaggtgtggt<br>ggtgggtgc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr18	15095263	15095264	2000512	0	-	AC208588;AC226067	NA;NA	NA;NA	LINE	L1	L1HS	atgtttaagtaatgtaaatagccatcttagtaaaatacttacataatatgtttttgattttcttaataatagacttgtgcagaaaaactttttataattt<br>ataagaatactaaattaactattgaaaacatttgtatgtctttttttatctcctatatttttccaggcaatattagcagaatactatccacaaagttttc<br>taagccatatcaaacatatcaatgtttgtgaaatcaaagcacaaaaatgaaaatttctgatatttaatatataaagtgtatctatacaatttataatttg<br>ataaattttacatgcttattctttctctgaatgtattacataattacatgagatatattaactcatatgctataatacttcattt<font color="green"><u>AAGAATAGTGTCCTC<br></u></font><font color="red">ATAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGTGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAAAAACGGCGCACCAGGAGACTATATCCCACACCTTGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGAGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCATGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAATTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGATAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGAGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCAACACCAGGCCTGCCCTAAAATAGCTCCTGAAGGAAGCGCTAAAGATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATAACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGAAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAAATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATGGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGACGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTTATCGCTGGGATGCAAGG<br>CTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACGTAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTTTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCCAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACTTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAACGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAGACCTAA<br>AACCATTAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TATTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTGACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACAAGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCAGGGGAGGGGGGAGGGATAGCTGTGG<br>GAGATATACCTAATGATAGATGACACGTTGGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAGTGTCCTC</u></font>ttcaaaatcgatttgggaatacttacagcttgatttggctcaactgaataa<br>atgaaaatcttagaagtttcattgttgctagatccaatgagaaaaactatccagtatggtacctttgcctgctattattcttctctatttatctttatta<br>gtattctagagttattaagaatagattataattgaaatatgagaagtcctgggaaaacttcatgggcagccacctaaccactttttttatattctaccgg<br>aactggctttaaggaagaacaatcagagtacatactttaattacaagcagaagaacagagtaactttaactttatgatattcaattttttttaattctaa<br>tctttatgtgaccctgcaaatttgaattcaggct	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr7	66591187	66591188	2000513	0	-	AC216283	NA	NA	LINE	L1	L1HS	aagagttctagaagataacacaggaaagtctagatgaccgtggatttggtaatagctttttagatagcaaaccaaaggcatgacccatgagagaaaaaat<br>tggtaagtattaaacatttttgctctgcagaagacactgccaagagatgaaaagacaagctacagactgggagaacacatttgcaaaagacatatctgat<br>aaaggactccaaaatatacaaagaactcttaaatctcaacaataagaaaatgaacaacccaattaaaaatgggccaaagaccatagcagacatctcatca<br>aagatatatgaatggcaaataagcatatgaaaaaatgttccacatcacctgtcatcaggggaatgcaaaataaagtaacagtgac<font color="green"><u>AGAACTCTCATCCAT<br></u></font><font color="red">AGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACCCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAGGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTAAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCTAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATTATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCACATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAACATCAACAAAA<br>TTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGACGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATTAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAATAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACTCTCATCCAT</u></font>tactcatgggaatacaaaatggtacagccactttggaagacagtttggca<br>gtttcttaaaaaactaaacaatactcttatgaaactacccagcaactacactccttggtatttactccaaggagttgaaaatttatatgcaaacacaaac<br>ttgcacacagatgtttatagcagctgggttcaaaattgccaaaacttggaagaaaccaagatgcccttcagtgggtgagtaaactgtggtacatccagac<br>aacggaatattgtttagctctaaaaagagatgaactatccatgtgaaaacacatgaaaggaaccttaaatgcatattgctaagtgaaagaagcaaatgtg<br>aaaaggctacatacagtatgattccaactatatga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:TYW1:NM:018264:13/16	
0	chr7	42529876	42529877	2000514	0	-	AC216175	NA	NA	LINE	L1	L1HS	tcttaccaagagcattatcctataataaatacagaattaaattgtttaaaaactcaaggtaagcaattctcccatttgcagctatttattaggtatattt<br>aagggatgaataaattcattttcaccacaagtattttgaaaaccaatctacttatttgtgtgaattcagtgattccctatgaactttcagaatatatata<br>tctcaagatcagctacttatctgtgaagggtgacatattgaccgaagagctcattatttttaagctctataaatatatctcacctgcctatttactcaga<br>ctaaaccatgcatttcttaagaatattgtgtgggtctggtaatagcttgtccaatgaatgcgcaaaagttattacaagcaagttcaat<font color="green"><u>AAGATCAAAGTA<br></u></font><font color="red">GGAGGGAGCCAAGATGGCCGAATAGGAAGAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGACTTCTGCATTTCCATCTGAGGTAC<br>CAGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCAAGTGGGTCCCTGACC<br>CCTGACCCCCGAGCAGCCTAAGTGGGAGGCACCCCCCAGCAGGGACACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCT<br>GTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGC<br>TGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGTTGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAG<br>TTTAAAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTG<br>ATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTACAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACATGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGACCTAACTGTCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAGCTCTCCACCCCAAATCAACAGAACATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATATCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAATTGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACAACCTAACATCACAATTAAAAGAACTAGAAAAGTAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCCAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTCGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAACCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCTGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGATAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTAACAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGACAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGCGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACATCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAAAAAAATAATAAAAAATAAAATTAAATAAAATTAAATTAAATTAAATTAAATTAAAATAAAAAATAAAATAAAAAATAAA<br>ATAAAATAAAATAAAATAAAATAAAATAAAAAA</font><font color="green"><u>AAGATCAAAGTA</u></font>aacagttatagggctaagcatgacaacaggtgcagctgaaagcacatgactgaaa<br>ggaaaatggtaatgaggggtggagttaggtgcctccaccctgtggatcagacacatgtctatcacacaggcacccagaggagtttggcaggaagatattc<br>agggcttggggatatgccgtttgctgtctctaagggatgagtcgatacagatctcaggggcgatttgctagctcttcccttgcacatttccagggcacaa<br>taattggcccaatggcttctagaaaaaccccctgagaaaagttacaattggcaaagggttttagactaatggaaacctggatggatttttcttgtatgtt<br>accttatattttatattatagaaaaaaactaag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr18	51425744	51425745	2000515	0	-	AC203624	NA	NA	LINE	L1	L1HS	ccctcctccaacatgtggggattattacaattcgagatgagatttgggtggggacacagagccaaaccatatcaatgggtgattgtgcaaaggtaggaaa<br>aattcaaaatatgagaaagcaaaaatagataaaaatgtaattgtaccatatatatttcttctcctgatatctaagcctggaaataggtcaggttattgaa<br>gtggtcatctagcagttaagtctaaggatcttttttctgcagtgttaacctgatcttgatccttcagctctgtgtggcacaatgaccaagttcttggctg<br>ctatgccccaacccttttctagatttcttctaaatttcaaaatttttttattctcctgaaaaccaactctttctctgccatt<font color="green"><u>AAAAATATATTTCTTTTG<br></u></font><font color="red">GGGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAG<br>GTACTGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACCGGGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGTGCAAGGGGTCAGGGAGTTACCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAAAAACGGCGCAGCACGAGACTATATCCCACACCTGGCTTGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCAGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGA<br>ACAAAGCTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGGTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTATGTCTGATTGGTGTACCT<br>GAAAGTGATGGGGAGAATGGAACCAAGTTGGAAAACACTCTACAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>CAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATGGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATAACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATGTAAATGGATTAAATGCTCCAATTAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>TACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCATATCAACAGAATATACATTTTTTTCATCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAAGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAAAGAAATGAAGGCAGAAATAAAGATA<br>TTCTTTGAAACCAATGAGAACAAAGACACAACATACCAGGATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCGTAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTCAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATATATTACTCGACACATACATCCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGGGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAACCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACTGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACGGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACTCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTTCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAGTGCCATCCCCATCAAGCTAGCAATAACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAACGCTGCATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAA<br>ACCATAAAAACCAGAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCGAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAATAAAAAAGCAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACCTATGTTTATTGTGGCATTATTCACAATAGCAA<br>AGACTTGGAACCTACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCACAAGAACAAAAAACCAAACACCGCATATTTTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACATGAAGGGGAATATCATACTCTGGGGACTGTGGTGGGGTGGGGGGAGCGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAAAGTATAATAAAAAAGAAAAAA</font><font color="green"><u>AAAAATATATTTCTTTTG</u></font>cgcaagcgatcatctttttatcctccttgtctcttttgttaaatagctacct<br>ttataattttttttctgattctctcttctctcatcagttctaggctcaatccccattgaactttatcctcttcattggacatgttgtgatttcagtctcc<br>ttgggaactttcatgtctggcttctcttcctggacccctttcctactcttcttcctttttcatccttaacctgactgtggaagattattgcaataatggt<br>aagtgaagcctgtttttatactcttttgcaatataacaccactgttcctcccattaacaaatgatatccttatcttcagccccttgaatcttggctggtc<br>ttgtagttggtcctaacctatagagtgtgg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr18	49216233	49216234	2000516	0	-	AC208322;AC231415	NA;NA	NA;NA	LINE	L1	L1HS	tagggttttcatacagtataaaggagttaatataggtaaagcatttagaatgcatcctgacacatggtaaatacattaatgttacattatggttgttgtt<br>gcttctgttgttattattactaataatatatttcaaactagctaaagtggattcttttatctatgagtaaaagcacagattaatacaaagagcaacatgc<br>ttcgtacttgaatttttaggtaaagaagtattaatatatatatgcattggtgcctgaaaaggccaagaaactatagtttagaaagtgtataaatggatga<br>agacaattaaaaaaaatcattaatgaagtcagggaattacaggatggaatgcagaatagggacaatcaactgtgttacaagaatat<font color="green"><u>GAAAAACCTCACTG<br></u></font><font color="red">GAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTTAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCTCACCCTGCGCGAGCCGAAGCAGGGTGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGCAAACAAAGCAGCAGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAACTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TATGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGAAAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATATATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATAATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTGGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCAAAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATGCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGAC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAGTAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG<br>ATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATCTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAA<br>AACTTAGAGTATAATAAAAAATAAAAATAAAAAAAAAAAAAAGAGAAAAAAAAAAAAAAAAGAAAG</font><font color="green"><u>GAAAAACCTCACTG</u></font>aaagaagtatagagaaaagg<br>tgctgatttaagcaactttggaaatgagcagagaccttaagactaaaggcaaaagaaactgtacacaagcactgtatccaaactgataaaggctttccta<br>cacagattacaggcaagtggaggaggctagaatgactcatatggtaatagattagagttaaagatgttagaattaactctgctgggtgtggtggctcatg<br>cctataatcctagcactttgggagtccaaggcaggagaattgcttaagcccgagttcaagaccagccttggcaatgtagtgaaacctcatctctacaaaa<br>aacatgggaagtagctgcgtgtggtggtgcactcttgtagtcccagctacttggaaggttgaggat	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr2	144626236	144626237	2000517	0	+	AC219161	NA	NA	LINE	L1	L1HS	ttacaaaattaattcattacattaaaagattaaaggagaaaatcaaaatcacccccatagatgcagtaagagcattcaataaaactcaatacccatttaa<br>taaaactctgcaaactaggaatagaagaaattttctttattctggtgaagagtaactgcaaaagcacatacagcaatcataagattatctttaagttcaa<br>gaatgtgacaaaattgctttctgtcactacttctattcagcattgcactaaagagtcttacaataagacaagaaagagtaataaaaattacacgaaagga<br>aataaaaggaaaaaataccattatcatgattcaaaaacaatattactgtctacattttaaaactctaaagacaaattgttagaatatat<font color="green"><u>AAGAAAATGTA<br></u></font><font color="red">AGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGTGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGTGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTATAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCGGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACAGTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCATCATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACATGAAAAAAAAAAAAAACAAACAAAACAAAGCAAACATGGAAATGTTTGTTA<br>TTTTAATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAAATTTGTGTACGTTAAATATGTGAAACTTATTGTATGCTGGTTACACC<br>TCAATAAAGCTGTTAAATTTTTTTAAATTTAAAAATATTATTTCAAGAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAATGTA</u></font>atgaagttaatatatacaagtgga<br>acatgaattaaactacaatctatacatcccaacacaagataatttttaaaatactattgacaataacatctgaaaacataaagtacctaaggaataaatc<br>caacaagatatgtaagatatttgagtaggatattataaaactttactgaagaaatataataaaggcttaaaagcaaaggcatactatgttcatggttaat<br>cataaagatttttattctgccaaattgatttttagattcattatgattcacaacaaaccccaaccagaacatattcctgcttttggtaaaatagagtggc<br>tgtactttttgctctaaatgcagtacaactaaaaacccgaaacacacacacacacacacacacac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr16	71028024	71028025	2000518	0	+	AC207451	NA	NA	LINE	L1	L1HS	tgtatatttaacattacaagaaactgccaaccagttttccaaaattgttgtaccactttacactaccacctgcattgtatgagagttctcgttggtctgc<br>attctcatccacacttggtatttagtcttttacattttagccattcaaatgagcatacggtgatatcacattgtggtattcattaataggcgtagtttaa<br>aggaaaattctatgtcatttactatataatatagtaaatgatatagtctatgtctatttcatttactataaatgaaaacacaggattatctagcatattt<br>agaaaaatcaacacaatggaaaaaaatcaatgtaattattttcttgcctggtgaaggctctgagatgagctctggttgctctttt<font color="green"><u>AAGAAGGGAAAACAC<br></u></font><font color="red">CGGGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGA<br>GGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCAC<br>CTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCT<br>TTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACGATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCA<br>GTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACT<br>GGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGC<br>AGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGT<br>CCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCGCAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGGCAACATTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTAGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGATTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGCTGAGAGATTCTGTCACCACCAGGCCGGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACATAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATGCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAATCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATCAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATG<br>CTCATGGGTAGGAGGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCACATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CCCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAACAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACACAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAACCCCATCAAAAAGTG<br>GGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAACATTAAAAAAAAAAAAACATTTCACACAGACAGAAACATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGG<br>GAAAACAC</u></font>tgggctggcatgatcttggctgggcttattactgtatggaaggaggatccacggtgtcccctctttacataccctattgcacagggtcttat<br>acatgcagcccaagctcaacagatgtttggttgattgaatgaatggatggatgcatggatggatgcatggatggatggatggatggatggatggatgggt<br>gtgtggaatgttgaatgagaacagttgaatagcatagagggtaatctgactattctgcaccttgtctgtcaacctgggataaagagtggcgatgggaaag<br>catggagaattcacagagtatggaaaagctcttttcatttttggcttgagcttccatttgacttgttccagaccagatgtctctagctgactt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:HYDIN:NM:032821:23/86	
0	chr7	56652491	56658515	2000519	0	+	AC217505	NA	NA	LINE	L1	L1HS	gcatcagccaggcaaagaccccatttgcataatagaagagtggtgggggcagccagctttctcgtgcactgtgtaaacatcacacctggcccaaccaatc<br>tttgggccctatgtaaatcagacactgcctcctcaagccagtctataaaatctggtgcactttgctgcaggccggaagtccactcgggcaaccctctccc<br>tcccagtagagagagctattctcctttctctttcttttgcctattaaagctccacttctaaacccacttcctgcatgtccacatactcaatttccttggc<br>atgagacaacaaaactcaagtatttaccccaaacgacaccgcttcattatgttgtaagtgattaatttattagttaaaattgctatgtt<font color="green"><u>AAGAAATATAG<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATACTGCGCTTTTC<br>AGACTGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTATGCCCATGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCAGCAGCGAGGCTGGGGGAGGGGAGCCTGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGTCAGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTACCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAAACAGGACATCCACGCCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAA<br>GATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAGATGCAGAGCGCCTCTCCTCCTCCAAAGGAACACAGTTCCTCACCAGCAACGGAACAAAGC<br>TGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGTTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTG<br>AAAACTTTGAAAAAAATTTAGAAAAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGAAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACT<br>ACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGACGGGAAG<br>TTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGCGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTACCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAATGTTCAGATTCAGGAAA<br>TATAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACGTAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTATAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACA<br>AGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATGTAAATGGACTAAATTCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTGAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCCACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGCAATTGAACTCATCTCTGCA<br>CCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACGTTTTTTTCAGCACCACACCACACCTATTCTAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAGTCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAGAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGGAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTTGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAGTAGGCCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCTGAATTCTATCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCGATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAGGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGATACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAACGCCGCATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATTTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGACCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAATACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACTTATGTTTATTGTGGCATTATTCACAATAGCAAA<br>GACTTGGAACCAAGCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGTCACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAAGGGGGAGGGGTAGCATTGGGA<br>GATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAAAGTATAATAAAAAAAAAA</font><font color="green"><u>AAGAAATATAG</u></font>cacattttaaggctgctgatgcacagtgcaataactgccatatacaagtatgacaccaattta<br>tactaggagctcaggtgcagtggctcacgcctgtaatgccagcactttaggatcccgggggcaggtggatcacttgaagtcaggagtttgagatcagcct<br>gacccaaatggcaaaaccccatttctactaaaaatacaaacttttttttttagtagaaaaaaaacatttatattagtgggcatggtggcacactccttta<br>accctgtaagggtgagtcaagagaatcacttgaacccaggaggcagaggatgcagtgagttgagatcacaccactccagcctaggtgatagagcgagact<br>tcttctcaaaaaaaaaaaaaaaaaga	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr5	13416608	13422853	2000520	0	+	AC208391	NA	NA	LINE	L1	L1HS	ggaactgctgcagagcccattttcttttatagtctctattcagggatggtagcttcacgtgtcattgtgtacattggtcaaaccaatatttttaagttgt<br>ggaaaatgctccctccagattccaaagatgcctagtagtcattttgcttttcttcttctatgaattttacttcatagtggatgtttcaacatatcccaga<br>caacagaagctcttggaaacatcagtaatgcggtgggtcctttaattgtcacagagtttacctcactacctctgaagtgagtgtgtcttcctaggacttc<br>aagcacacttgtcatttatctggatcatagatttgttttgctctaaaacccatttgcattgctatctgttggttatggccccat<font color="green"><u>GAAAATCACGTCAACC<br></u></font><font color="red">CGAGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGA<br>GGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATCGCCTCAC<br>CTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCT<br>TTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCA<br>GTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACT<br>GGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAATACAGCAGTAACCTCTGC<br>AGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGT<br>CCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CCAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCAAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCTTCTCACGTGCAGGGACACATATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAA<br>AGGCAGGGTTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCAAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGATAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAGGAGAATTTTAGACCGATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGCAATCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAAAACATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCCTGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAGAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCAAAATTGACAAATGGGATCTAATTCAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCTATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACGCCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAAATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAGAAAATTAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAACTGTAGATCCAG<br>AAATATTTAAGAAAGATAAATAAATTAGAAAAATAGCACAAACAGAAAAGACAAAAATAAGTCATAATATATAATCTTAATAATAAATATAAATGAATCA<br>ATGCTCTAGTTACAAAAAAAATTTGCTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATCACGTCAACC</u></font>ttgtcctttgggttgtaattatgtctaccttgttttg<br>gatggttaaggtatgccatctgtctcctcttattttcctatcatcctttcatccccattgctattagggaaccctgttctgtaagactagttctactatt<br>aacccaagtgttccaagtacagccactattgggctccttctcaccaacacatttatttttgctttgagaaattagagtgtcttccttgccatcccatgga<br>gcataggtagctggtgggtgttccagtttttcatagcatatcatctctagaagatccaattatctcagttttttttccctttcttccggcatctgccagg<br>aagtctagcattcctacttactatgggccatagctttctccaagctt	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr14	68784255	68784256	2000521	0	+	AC210873	NA	NA	LINE	L1	L1HS	ttccatatttttgcttaccaaatggtatgacctacttgaaaaaaaatgagaagctgctgcagaacctgcctcaggtgtcagcatcaattaatgtttcatg<br>gttataatgagaaggagcagaagatgagagtctaagctccccttaaagggcttatagttcactttgaacatctcatcacatatttatttacgtgccctct<br>cattttcaagtactgtgttaggtactgcagacacatggatagtgagacaatgtctctacccttaagaactagtagtccagtggtttctgttaaatttcag<br>tatgatgtcataaattctgtggtaaagtgccgtgtgatgtcaggaaggtcatcagtaaagactttctagagttgatgttact<font color="green"><u>AAGAAATCAATGACATGG<br></u></font><font color="red">GGCGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAAGAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAGACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGTTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCTTATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATATGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCAGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAAACATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATCAATGACATGG</u></font>ttaataagctcactagtcctgctgacactgagtccctaccctcgg<br>ctccatttggatgaggctctgtgagatccagtccctgccttgggggctttgtcattcatgagagaaacaagtccatcactccttccagttagatatctgt<br>gaaaaggtggaaaaagcaaagaacacttggaatttgggagagaaagagagaccatttaagggaagaattgcatttgagttgaattttgaaaaaattgaga<br>taggcttttgcccggcatgggtaaaagtgggaaacagtccagaagaaagatgtgagcaaaggctcagggacaggagaacttgggatgtgttctgagaaca<br>gtgagtaatccaaaatggattgatacatatatcacat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:RAD51L1:NM:133509:8/11	
0	chr2	23191017	23191018	2000522	0	-	AC229893	NA	NA	LINE	L1	L1HS	acactggaacaaagatgagggaagtaagaagccaggcagttaggcttccctgagcacaccgtctgatgtggttggctgtgtccctgcccaaatctcatct<br>tgaattgtagttcccgtaatccccatgtattgtggtaggaacctgctgggaagtaattgcatcatgggggtggttacctccatgctgttcttgtgatagt<br>gagtgagttctcatgagatctgatagttttatcggggggttttttcccatgttcaatctgcacttctccttgctgccaccgtgtgaagaaggacatattg<br>gctttccctttcaccatgattgtaagttccatgaggcctccctagccatgcggaactgtgagtcaattaaagttctttccttt<font color="green"><u>ATAAATTACCCAGTCTC<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCAGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCCCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCACACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGAAATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAAAGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAATAAATAAA</font><font color="green"><u>ATAAATTACCCAGTCTC</u></font>aggtatgtcctaatagcagagggag<br>aatggactaatacaccactcatgcaattgcacaggaccccacacttggtttaatgctctgctgttgccatcttgtgattcttaccaatttgtagtgaaaa<br>gcatttttcattttacactgagcatgaaacattatgtagctggtcctgggccaggaatgtgttatccagggaaaagcattctaggcggaagacactagta<br>agagcataaggcctgaaatgaacaagaaagaggaaggggaccagtcaactggagtgggcgggcaagagaacagagtgatgggagaggacgtggcaggggg<br>cgttgagattgggcccttgggaggactgtggctttcactccgagcgagatggcaaagc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	82098044	82098045	2000523	0	+	AC211781	NA	NA	LINE	L1	L1HS	tttacttgtgttcaattttgctaatttcagtatattgaaatatgccaatgtgctctttttcttgtatctttcttggaactcatacttgtaattttctaaa<br>tagactagagttaccataatcacctcttctttgacccatgagatatttagaagagctttccatctttctgggtttttcagatggtttttttttttttttg<br>ccttttcttctgttgtttttaatcttgcatatgttgccctgaactcagaaaacatggtgtatataatttctaaccctgtaaaaatgatatataatccttt<br>tttgaaaaccaatgagaaattttaaaaagaatgtacatttttagccatgtacagagtttcaatatatgtcatttagaaatctta<font color="green"><u>AAATAAATTCATATTC<br></u></font><font color="red">CGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGTAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATTGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAACATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAACTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAATAAAATAAAAT</font><font color="green"><u>AAATAAATTCATATTC</u></font>attatatatgattaccaaatacttttattcttattttttgcata<br>attcatctgtcaaaagtggaaggtgctgtcttaacacttctgactaaactcattttaatagaggtttagatacataaatgatttttaaaattcactcagc<br>aaatatttcaggagcacctaatctgtaccccttaaatacagaatacctgctattatgaagtgctcatgatgggaagtattttatggaaaccaaaagaaag<br>tgaaacaaactctttatatactatatagttttatttcaattcatgtaagggctgtaaaggagacatagggtactttagatgtgcaataatggaatttacc<br>tgaaaagtcagaacattttttcctttttgtttttgtgtta	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr15	47507343	47507344	2000524	0	-	AC216176	NA	NA	LINE	L1	L1HS	gttcttgtaaatatatatgagctaaattcatatataaaacagtatctgaacaaaaatatattaatagcatatttgtgttactcatttaaaacacatacat<br>tatttgaaaaatgcccaacagttttaacagatccctgtgtagcaaaatgtgtttgtggtaactgtgcacaaccccctttaatatatctgtggacaaagaa<br>aagcatccttgatgttcaagggcaactataacctggttccaataatgagagtttagagaatgctcttttttccgttaaagtcttcagagaacaaagattc<br>tctagccacagatctttaatagcttctgtttagattcaggtagattgcacgatataaagtataaacagcagatgtttgtttgaatt<font color="green"><u>TAAATGCAATTGAA<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCCGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGCTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACTGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACAAAAAAAGAGAATTTTTGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTGCCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGCAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAATAAATAAATAAATAAATAAAT</font><font color="green"><u>TAAATGCAATTGAA</u></font>ttgtccatcaaaaagaataccattccaatttataattagcctc<br>aaaataagtgaaaatctatttctgtctagaatgaagcttaggtctgtttataaaacagtcatcagatcatgtgcttccactgcttatagacagatcatgc<br>tcattcttaataggcttttaaatccatgtaactgtcagcaaagaaagaacaaactaaatgtgcagatgatactatattagccaaactcactcttctccaa<br>cagtaagaagttctgatgtggtctttgtgcccatctgccattttctagaataaactcagactctatcctaagaaaactggtaagtacaggtatacatctt<br>ctgatttataccttaacaacaatttttaagtttacttaataac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr21	23626206	23626207	2000525	0	-	AC211784;AC203635	NA;NA	NA;NA	LINE	L1	L1HS	tgcaactggtacttaaaagatttgaaggcaaagtgcaacttaatggaatatattagatcaatggcttaaatgtgagatcctttgttaagacttctgaaag<br>aataaaatcagtacttcttagttactctcaattagacaaaattcaccattttaaagatttgcccctctgaaaactaaatgcccaatgtatcagttaatac<br>attgagagacaattactcaaaaagaatttctgatgtgtctttcgagttacaactcttagaaatcagactcatagataatttgccaagtgtttaatggagt<br>tatgcccagaaacaagttggcagtctttatcgaaaggcactgagactgttcaaactccaaaaattctctgattccacatctttat<font color="green"><u>GAAAAGAAAATAGGT<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCCGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCAGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTTGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGAAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGAATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGATGGATTAAAGACTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACTATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG<br>AGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAGAAACATAGATCTAGGGGACACATTCCCCTTTTCCCTAGTGGAAATCAAGGTAGACCAAGACCAGTAGATTAAAACAGAAATCAGAGATG<br>TGCTATGGTTTGGCCCTGTGTCGCCACCCAAATCTCGTCTAGAATTGTAATCCCCAACTGTTGAGAGAGGAACCTGGTGGGAGGTGATTGTATCGTGGGA<br>GCCATTTCCCCTGTGCTGTTCTTGTTATGGTGAATGAGTTCTCATGAGATCTGATGTTTTTAAAGTAGCAGTTTCCCCTGTGCACACACACACTCTCTCT<br>CCTGCCACCTTGTAAAGAAGGTACTTGGTTCTCCTTCACCTTCCGCCATAATTGTAAGTTCCCTGAGGCCTTCCCAGCCATGCAGAACAGTGAGTCAATT<br>AAACATCTTTCCTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAAGAAAATAGGT</u></font>taagaaaatttctgtaagaaaatattatcctttgaact<br>ctccagaaatatctaaggaggatgaaaaaaaataaaggatatctcagagggtagagccagggaacatgaaggaaatatgggaagtcgctcactggaaaag<br>gaatatggcttcgtcagggagcatgctttcccctgaaactggaaaatatgacctatttgcccaattttgtttcagaattgctatggatcatgaaatgcat<br>gtggttatcatttttctccttttgaaatggcagcattttttgtcgttcttctattctgtgtcaccatcagaagttgtgtttgtgtagtgaaaataacatg<br>tttttcaatatggtgcctcactgatatccagcatcacagtgaatcac	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr9	7741408	7741409	2000526	0	+	AC206439;AC226592	NA;NA	NA;NA	LINE	L1	L1HS	ttgctttgcatcttccagcactttgtattcactaagtgccttatagtttattccttaatcatcatagaatccttgaaatagttttgccttgaaatattgc<br>catctctgttttatgaatggggaaactaaaagtgatattcaaagttacacacaaagaccaaagttaaaacccgtaagtcttaattacaagtagtcagcct<br>tccatatccatggtttccacatccatggattcaaccacctgaggatccaaaatattcagaaaaaaaaattccacagaatctcacaatgtaaaatttgaat<br>ttttgtggtgctgagtactacactgagtccacacagatgaaatgatgcgtaggcattgtattcggtactatcagtaatctacagatgatt<font color="green"><u>TAAAATGTAC<br></u></font><font color="red">CGAGTTATTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATC<br>TGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCT<br>CACCTGGGAAGCGCAAGGGGTCAGGTAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGC<br>GCTTTTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTGAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACA<br>GCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGA<br>ACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTC<br>TGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTG<br>GGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACACCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAG<br>CTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGAT<br>AAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGTGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAA<br>CGGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGG<br>CAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAG<br>GCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGC<br>GAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGT<br>ACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAG<br>ATTCAGGAAATACAGAGAACGCCACAAAGATTCTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAA<br>TATTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGA<br>GTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATAC<br>TTTATAGACAAACAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACC<br>AGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGG<br>ATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCA<br>TCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAA<br>AAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATC<br>AATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTA<br>GACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACT<br>CTGCTCTGCACCAAGTGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAA<br>AATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAA<br>CTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAA<br>TAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAA<br>TGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGA<br>AGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGA<br>TCAACAAAATTGATAGACTGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGA<br>TCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATAC<br>ACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGA<br>GTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGG<br>AATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATG<br>AACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGA<br>TGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAA<br>AGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAA<br>CCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACA<br>TAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGA<br>CATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAA<br>AAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGTCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAG<br>GAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCC<br>ATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTC<br>TTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGTCAAAAGAACAAAGCTGGAGGCA<br>TCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGA<br>GCCCTCAGAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGC<br>TGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTA<br>GACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGC<br>AACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGG<br>GAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCA<br>AAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGA<br>AATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAA<br>ATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCAT<br>TTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCAC<br>AATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAA<br>AATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCT<br>CACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATA<br>GCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACA<br>TGTACCCTAAAACTTAAAGTATAATAATAATAATAATTAAAAAAGAAAAAAAAAAAAGAATGAAGTCAAGAAAAAAAAATAAAAAAATAA</font><font color="green"><u>TAAAATGTAC<br></u></font>aagaggatgtacatggattatatttaagaagactccattatacatgagacacgagcatctacaggctttggtatccacgagagtcctggaagcaatacca<br>catgaatactgagggagactgtatattccattgaatttggcctttttttaattttatttttctgtacttaactttgggttttctgtaatctcttcaagtc<br>aagtcaaaaggaaaaatctccacttgactttgcccaacctttattctgactttgtcatggctgaccatgatttgataacgtttccagcctttccaaacct<br>gagattttgatttcttgtacaagacttccacttctctttgacaacagtgttttacaaacttttcacagaaggatagcccacagaaaggaa	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr3	151148556	151148557	2000527	0	-	AC205797	NA	NA	LINE	L1	L1HS	acaccaaaatttacgtcttctgacttccaggctaatattctttgcatcacagggagcttgctcccatttctaaaaggattttccgtcctatgacacccgc<br>ccaggggtgattcaattcatgggagcacactgctggcattgagatgaggtatgatgaaatgggctattggtaaattctctagaaaggcagcacattaaac<br>aaaacaaaacaaaacaaaaacaccacaccagcactacaggcaagattactagggagaaaacactgtctcgatcatgctgtgtatgatgttataggttttg<br>atttatgagtcactatcagaagggtaggatggtgcagtggtaagaacattcacagtctgacagtttagtgctggcctccctgtatctg<font color="green"><u>AAGATCTTCGGG<br></u></font><font color="red">GATTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCTGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATTCTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATATTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACTGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCACGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACACAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAATATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACTATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAAAGTATAATAATAATAATAATTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATCTTCGGG</u></font>aggccagctaactttattcat<br>ctgtataattaagggcattagctgatgctccctgaactctccagctttaaacaaaggacacctttgattccataggagtccccccaatgagaagaaatat<br>ttctagattctggtggaagcaaaaagaaagtatcttcactgaatttgagaaaaattggggctttcccaggaaaggaagcattcaagccaaaaccaaacga<br>agacagaatgaaaataccttgggctaaaccaaataacatgaacattgtactgaggaagatggtaccatcttgggagagccgccactttacgtttcgctgg<br>cttatttttaattttccgggagctgtctgttccatgacacacaggggtacttactggaaagctgctt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:MED12L:NM:053002:42/43	
0	chr10	36759287	36759288	2000528	0	+	AC208581	NA	NA	LINE	L1	L1HS	agtgggttgactctatgtgaagatgcacatccagagatttattgtccttgcccctgggtctatggagttataaagaaggaaggaattaagcatcttgtta<br>ttgaacggtcaaaaggaaaatgtcactgagtgagtgaccttaagcaagtcatgaaactgcacgagaagggtttaccatggagaagaatgaggggtccagg<br>cagaagcctccaagacaataaagagatgaagtaatgaaagggaactgagtgacccaggaggccagggctatgaaacacactctccaccggctgccactac<br>atcttgtctgatgaggtcaaccaccacattcaaaaagtaacatactatcttcttaatttaggttcctttactcaaaatgctgtt<font color="green"><u>TAAAATACCTAGTTCG<br></u></font><font color="red">GGGACTTCATTTCTTTCTTTATGATATAAAGTTTTGTTTTGTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGG<br>CTGGAGGGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCAGGCCATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGACTACAGGCG<br>CCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGTTGCGATGAAATCGGGGAGGAGCCAAGATGGCCGA<br>ATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGT<br>GCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCACAAGGGGTCAGGGAGTT<br>CCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATCGCGCTTTTCAGACCGGCTTAAGAAACGGCGCA<br>CCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAA<br>CGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAG<br>GCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCT<br>TTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCT<br>AACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGATATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACT<br>AACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAACAGAACA<br>GAAAAACTGGAAACTCTAAAACGCAGAGCTCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGA<br>CGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTA<br>GAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCC<br>TCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAA<br>AAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAG<br>TTGGAAAACACTCTGCAGGATATTATGCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGAT<br>ACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGT<br>TACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAA<br>AAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTG<br>TCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAG<br>ACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTA<br>AATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCA<br>CGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGA<br>TAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAAT<br>ATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTA<br>ATACCCCACTGTCAACATTAGACAGATCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACAT<br>CTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTC<br>CTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCT<br>CAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAA<br>AGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAAAAAGCAGGAAAGATCCAAA<br>ATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAAC<br>TGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACT<br>AATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAA<br>TACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTG<br>AATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATT<br>CTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGC<br>ATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATAC<br>TGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAAT<br>AAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATG<br>CTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAA<br>AACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAG<br>GCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTC<br>TCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACA<br>GACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCT<br>CTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTG<br>AAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGT<br>TCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAA<br>GGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAAC<br>TATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCTTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGC<br>TGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAA<br>CCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTA<br>ATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACA<br>AAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTT<br>CTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCAT<br>CTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACT<br>GTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATA<br>CCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCTCAATAGCAAAGACTTGGAACCAACCCAAATGT<br>CCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACAT<br>GGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATC<br>ACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGAC<br>ACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAA<br>AAAAAAAAAAAAAAAAAGAAAAACTTTCAGTGGTCCTAACACAAAAAAAAAAAAAATAATAAAATAAAA</font><font color="green"><u>TAAAATACCTAGTTCG</u></font>taagtgcacaggtta<br>ttaaatatacattgctttgacctacactatggattaaagttgaaaattaagtcaataacataaatggttaatacacaagtcactgatttagaataagttt<br>ttttaatcaatgtgtttattttaaattttcattgggttggtttggaggtcattaggacattttgaaggtttatggtgtccatgaaggactggttccagga<br>ccttcctacgataccaacattagcagatgctcaagtccctgatatcaaatggcactgtatttgcatataacctatgcacattctcctgttactttaaatc<br>atttctaatttacttataatgcctaatgcaatgtaaatgctatgtaaatgcagttgttctattgtattg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr18	47870321	47876356	2000529	0	-	AC208178	NA	NA	LINE	L1	L1HS	aagaagaacattagagaaggaataaatgaagagaaataaaatttattttttaattcttaagtgatctaacagatagcaatttgttcaaaataacagctat<br>atttggtaattatagcttataaataaatgaaatgaattataacaatgttataaaggatgtgaggaaagaattggaaatactctcttataagatacttgca<br>ctacccatgaagtagtagtacattatttgaaagcagacttggagtagttgtaaatgtatattgcaaagtctaaggcaaccacttttaaaagttttaaaag<br>tataattaatatgttaaaagagagaataaaattgtataaaattctcaattaaaaacagagaaggcaaaaaaccagtgtcagac<font color="green"><u>AAAAAAAAACATACAAG<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCATACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAATGGCGCAACACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGTTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGGGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGTATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGGGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGTCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>ACAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCATGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCCCCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAAAAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGAAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAACGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGACTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>ACAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAATATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATAGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACGCTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCACTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCCACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>TGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCGAAAAATACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAATTAAAAAAAA</font><font color="green"><u>AAAAAAAAACATACAAG</u></font>aagggcaaaatagaaaacagtaacagatatggtagatactggtcca<br>attatataaaaaatcactttaaacatcagtggtctaaatataccaattaaaagacagacagtaggtcaggcgtggtgacttacacctgtaatcccagcac<br>tttgtgagcctgagttgggtggatcacctgaggtcaggagttcgagactagcctggccaatatggcaaaaccccatctctaccaaaaatacaaaaattag<br>ctggtgtggtggtgtgcgcctgtaatcccagctactcaggaggctgagataggagaatcgcatgaacctgggaggcggaggttgcagtgagccaagattg<br>caccactgcactctagcctgggagacacagtgagact	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr13	107436440	107436441	2000530	0	-	AC207964	NA	NA	LINE	L1	L1HS	aattatacatacaacaatataaaaaaatttaaaatataaatgggttatacatgtgttttaagcatgtaaaaaggggctggagccaagatggccaaatagg<br>aacagctccggtctacagctcccagcgtgagcgacgcagaagacgggtgatttctgcatttccatctgaggttccgggttcatctcactagggagtgcca<br>gacagagggcgcaggagagtgggtgcagcgcaccatgcatgagccgaagcagggtgaggcattgcctcactcgggaagcgcaaggggtcagggagttccc<br>tttcctagtcaaagaaaggggtgacagacagcacctggaaaatcgggtcactcccacccgaatactgcgcttttctgatgggctt<font color="green"><u>AAAGAACGGCACACC<br></u></font><font color="red">GTGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGTGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACTGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAGGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATTGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACGGGTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCATGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGGGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGACTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGATACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAACATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGAGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACATCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGCATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAGTGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCATAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGTTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAGGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCAAATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTACTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATATATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAGAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATAGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGAAGGAAAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAACGCCGCTTACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCACGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTAAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTACATAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTGTCACTCA<br>TAAGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGTCACATGTATACATATGTAACTAACCTGTACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACGGCACACC</u></font>acgagattatatcccgcacctggctcagagggtcctacgcccacggag<br>tcttgctgattgctagcacagcagtctgagatcaaactgcaagacggcagcgaggctgggggaggggcacctgccattgcccaggcttgcttaggtaaac<br>aaagcagccaggaagctccaactgggtggagcccaccacagctcaaggaggcctgcctgcctctgtaggctccacctctgagggcagggcacagacaaac<br>aaaaagacaacagtaacctctgcagacttaaatgtccccgtctgacagctttgaagagagcagtggttctctcaccacgcagctggagatctgagaatgg<br>gcagactgcctcctcaagtgggtccctgacccctgac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	59944566	59950596	2000531	0	+	AC217694	NA	NA	LINE	L1	L1HS	ttctcataataaatatcaaggacattctcattctttgcacagatgtgatagatgaagtcataatactatacaatgcatagaaaaaataattttttaaaca<br>aaacatggagtcctatatctgtaatgttggtggatgctgcatgcactaagggctccagagaacacagagtctagaacaatgagatagaggagtaatcgta<br>accacagaacaagagacaaaccatacttatcaatattgggaacacagatgatcaagatcagctgtttcccagccaacacttacaggtagctaaaagatga<br>gaggaaaacacaagcaaacaataaaaatggaaaactttttattcaatttggaggaaataactggtaatcttgaagaaagtaatttcaat<font color="green"><u>AAAATTTTTGT<br></u></font><font color="red">TGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAACATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTTGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCAGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTTCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAACTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTTCATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACAGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTAAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGAAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCCATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATTAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAGTAACAGAATCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGTCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAATTGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACGTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAGCAGCATGGTATTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGACACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCGTTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACTCATTTGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATATGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTTTGT</u></font>attgaaaacaaaattattgggatctaaagaggaaaagtagatgtcaatcatatttta<br>aattattttgtattcaaagcaaatagacactggtagcatgaagaagtacaaacgatgataggttttagttttctttcaacaagggaattgttctaaccaa<br>atatgttagataataagatgaagcctatgcataaaaaggctaaaaatacaggagagagaaaagatcacatattggattacaggatatttgcaaaactcgt<br>atttctctgaaccattgtatctgcttttccttctgctttccttctgaatccattccattttctccactgcaaataattcattcattttttgagtgtctga<br>taagcaaatatcataatctagtgtggcttgat	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	179575378	179575379	2000532	0	-	AC216813	NA	NA	LINE	L1	L1HS	agaccttacacccttcacaaacattaacttaaaatggatcatagacctaaatgtgaaattcaaaactataaaactctttgaagataacataagataacac<br>tagctgactttggataaggcgatgagtttctagaaacaacaccaaaggcacaatacatgaaagaaataattgattgcctggtcttaagattaaaaactac<br>ttctctgtaagacaagtcaaaagattgagaaataagccacagaatagaagaaaatatttgcaagacacatctgataaaagactattattaaaaacaaaac<br>aaaacaaagaactcttaaaactcagcaataagaaacaatccaatttttaaaaaatgggcaaaatacctgaacagacctctcact<font color="green"><u>AAAGAAGATATACCAG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACT<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGGCGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCACCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACAATCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTGAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGGTCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCCTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGTATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAATTATCTGTTAGAATTCTGAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGATATACCA<br>G</u></font>atggcaagtaagcatatgaaaagatgttcaatatcatgtcatgaggggatttcaaattaaaacagcaataaaatatcactatacagtattagaatggcc<br>aaaatctaaaacactagcaacaccaaatgctgaccagcaatggggaacaacagaaacattcactcatcactggtgagaatgcaaaatggtaccaccactt<br>tggaaggcagtttagcagtttcctataaaaacaaacatatctttatctgacaatttagcaactgtactccttagtatttacccaaatgaattgaaaactg<br>ctatccacacaaaaaacccacacacgtttatagcaactttatgaggaaacaagcaagacgtccttcagtacaagtggataaactg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:TDRD5:NM:173533:4/17	
0	chr2	42051417	42051418	2000533	0	+	AC193155	NA	NA	LINE	L1	L1HS	ctggaagaattggacatctataggccaaaaaaagatccttgacctaatcctcacatcttatactgactcaaaatggaacaaagacccttaaatataaacc<br>ataaaactataaaacttttagaaaataaaacttgggagaaaatcttcaggatccagggataggcaaagaatgtttagacttgtcaccaaaagcatgatcc<br>attaaaggaaaaaatgataaattggacttcatcaaaatttaaaatttgctctgcgaaagactattgctgaggggatgaaaagacaagctacataatggga<br>gaaaatatttgcaaaccataatcaaaccaatagtcaacaaacgactgttatctagaatgtgaaaagaactctcaaaatgtgacaatt<font color="green"><u>AAGAAACATCAGA<br></u></font><font color="red">AGAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATGAGCAATGGAAGATGAAATGAATGAAATGAAGTGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAACAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAACGATTCCTTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCTAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACATCAGA</u></font>taagaaaatgagaaaattacatagacatttcatcaaaaaggatatacaga<br>tgacaaataagcacataaaaatattttcacatcagtagccattaaggaaatgaaaaattaacaccacactgagatatctctatacacgtatcagaatgcc<br>taaaataaaaaactgtgacaacacctatctgggtgtggtggctcacgcctctaatcccagcactttgggaagccaaggcaggtggatcacttgaggtcag<br>gagttcgagaccagcctgggcaacatagtgaaaccctgtctctactaaaaatacaaaaattagtcaggtgtggtgattcatgcctgtagtcacagctact<br>cagaaggctgaggtataagaatcacttgaacccggga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr5	21207733	21207734	2000534	0	+	AC208067	NA	NA	LINE	L1	L1HS	cttctattcaagtgttatttgaataaattatgatttatcttaaaagcagatccaccattattcaattatatttttcttatattccttttatttagtcata<br>tcttgttaagttacaattagttgaagtatgttgctattttaaaacaatgatggttttaataagaaaaaatatatattaaagcatttcacgagtgccatga<br>cattttgaaaaaatcagcccaacaaatctatccttttttgttgaaaacttagattaaaatttcaggtagagaggatgataacttttagatagtagatata<br>cctttctccactttggaaatgaaaactgaatcaaccataatattttccaacaagaaaatcgtccacctttctgaagcatat<font color="green"><u>AAAAATAACTTAAAATTCC<br></u></font><font color="red">CGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCAGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACCGACGCACCTGGAAAATCGGGTCACTCCCACCCAAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTATGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATCCTTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTGGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCGCTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCGTATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAGAATAGGGCGTCCGAAGGCTTCATTTGTTCACAAGAAGCCAACTGAAA<br>ATTAACATATAAAAATGTATAAACTAGTATAAGAAATTGTCAAAACAAAGTGAAAGCATAGTGGAAATAAATGCATTTAAGAAGAAACAAAGATAAAAGA<br>AGAAGGAAGGAAGGAAAAGAGGGAGGGAAAGAGGAAGGTGGGGAGGAAGGGAAGTAAGATAGCACTCTAGAGATGGTGAAACCAAAATAGTATGGTTTCC<br>TAATACATACTGTAAACTTATAAAAAATGTTGGGGCCCTTCAATTATCCTAATAATGTACAGAAAGCTATTTCACTAAAGTAGTGGAAGAATTCTTGCTG<br>TGTATTTTTATGATTAAATCTCTGGAAAAATGTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAACTTAAAATTCC</u></font>ttcaatattaaatgatgtagttatattcaa<br>taagtcgtgtttatattacatttataatatttaaatgagatttgaaaacaaacaaaataacccaccctagaacaaatgcatctcttagctagactgacaa<br>ataaacaaaaaaatgctactgatttcagaacatttgaatgataaagcctactcttgttccaacttaatttatcttaaacatgaaaatgtaacatgacctc<br>attattgacatggatcataaggtaaataaaaagtacattcatgaaattgatgatacaggttaaaaatgctttaaatagtttttcttttctaacttttcta<br>ttctagaaggtgttgataccaaagaattcttacactgcatagagataaaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr14	31150827	31150828	2000535	0	-	AC216122	NA	NA	LINE	L1	L1HS	taataaaaattctattagtttaagaacaggacatatacagggaaccattagagggcgatagacttggctaccttggtaactcatagaactgctctcattg<br>aattgtatttaatattatatccctgggtttcatgaaagttgctatacgaaacagtcacatgaaatctataagggtaactgatattaattactacctcatt<br>acatcacttaatttattctagataatgcccaatatgagcaatgtcttttgtaatgtgatgctaagaaatggtttgcttagaataaaaaacagaaaatctt<br>tctgacagaggtttttttatcttaatcatctctctcttttttatcttggctgtgagaaaattcaaagccaaatttgagaatt<font color="green"><u>AACATTATAACTATTGAG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGTAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACGTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACATCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCACATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAACAGAACCCAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACATTATAACT<br>ATTGAG</u></font>cttttactgaattatttgtgagcttttatcagattgttttcattctatgtgctatttgagggagctgccttaaatctgttttagaatatgaaca<br>caatatttaatctgtaaatttatcctatgtattgacttatgctaaaaatatttaaattcagactaaaatgatctatataaaaaatttaaaatgtacacaa<br>aatgatctttatagatggcaagtataaaaaatataaacagaagtgaccttattatcacgaaatactgaaaactgctttatgatatttccgtggtatttgt<br>aaactgttgtcttgttttttatggctctcagaaatcacttagttttaatttattcaaccagtatgttgagcgcttttttttttttttt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SCFD1:NM:182835:13/24	
0	chr15	56251153	56251154	2000536	0	+	AC207983	NA	NA	LINE	L1	L1HS	tttatttttttttccctaaatgtctgatagctgcatccagtgatatcatgtgggcctggagttttctttgtgggaaggacaaattcaatttaattaacaa<br>caaattcaatttcttttaacaacaaattcaatttctttcaataataaacatctattaaagttttgtatttgttctgtggctagttctgaaatctgtgtct<br>ttcaagaatattatctacttcactaaattgtgtgtacttctttactgatacaaaattgtacaaaatgttttctttttatctttttcatttccacagggtc<br>tatagcaatgccccagttttcattctcattaccagtaattagtgccttctctctaactcttgatcattctagctagaggttt<font color="green"><u>AAAACTTTAATTGATGTC<br></u></font><font color="red">CGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACTGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCAGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAGGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGGAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ATTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAACGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAACCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTTTAATTGATGTC</u></font>ttc<br>aaataacaagcttttgattacaataattttttttctaccattgtccactttctctttcactgattttggcccttgtctttattatttcttccctctactt<br>attttagaattcattcgctcttctttttctaatttattaaggtcagaactcaaaacattcatttatatcttgctccttttctaagttaagcattttaaag<br>acataaacttccctctgaatataactttagctgcattccacaattgtgatattgctgtattttcattttcattcagttcaaaatgttttcttctttgaca<br>tatagattatttagaagtatactaattaaattccaaatatctgcagtttttctagatcttaatattattggtttccaat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:NEDD4:NM:006154:2/29	
0	chr20	17860936	17860937	2000537	0	+	AC207480;AC225623	NA;NA	NA;NA	LINE	L1	L1HS	gcacgaggcatcatccaagtgacaggcaactgagccagctcctcagagcagagcgctgtcgttgtcccttctcagagaggacacccagggccagaggcaa<br>aggaggaaagcacaagtgggtctgctaggaactaatttaaagaagcaagtcagctgggctcggtggctcacacctatactcccagcgctttgggaggcca<br>aggcaggaggatcacgagcccaggcattcaaggccagcctgagcagcatggcaagaccttatctctacaaacaaaaattaaaaaaaaaaaaaaaaaagaa<br>caagtctctggggcctgtgcaaagggcagcagggtgactgggtccccggagatttgggttgggatattcaacacgtgccttggagaat<font color="green"><u>GAAAATACAGTC<br></u></font><font color="red">CGAGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGTCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCATCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCAACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTACTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCAACAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCACAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCGGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAAAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAGCACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTGCAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAGCAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCCGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCAACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATGAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTCCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCTAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>AAATTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACACGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGATGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAAAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATACAGTC</u></font>aggtttgggaacaaccacttcaaccccgggggttgaaatatgc<br>ccccatctaactgcccactgctcggggcttctgaacgtttcagcccctccgttataaacaagggaacaggaaacccaggattgccctccccaccaaaggt<br>gtatctgtaggaatgttcaccatagccttgttttttgtttgtttttttttttgagacagagtctctctctgtcacccaggctggagtgcagtggcacaat<br>ctcggctcactaaaacctctgtctctcaggttcaagcgattctccagcctcagcctcttgagtagctgggattacaggtgcctgccatgacacttgacta<br>atttttgtatttttagtagagatggggttttgccatcttggccag	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr2	144010794	144010795	2000538	0	+	AC225318	NA	NA	LINE	L1	L1HS	cagagagctaaatctagatgacttgcatcaatatttgattagatacattagctggtcgaactctcaaatgatcagaataaacatgattatgtcttaaaaa<br>catggtattaaggcattgttggacgttggagtgtatgtgtgcaatggtttcattacctgcagaataatgaagtgtttcttcctgactgaaaaagaccatc<br>atagcttcagctgatgtgctacattggaaatagctttagaattccaagtttgaattaggcttggtgttcaatctcagtctatgaattatagattacagat<br>agcaaatgactattgagatttttggttcaaggaaaatcaaagaagagcaaaattagaaatattttaaaatttgaaatctgtcttt<font color="green"><u>AAAAAGTTTGATGGA<br></u></font><font color="red">AGAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACAAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGCCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAACCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATCGTCAGATTCACCAAACTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACG<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATGTAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATCTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTTGATGGA</u></font>ttagcaattgtatgccatgtaattacaatgtctg<br>cagagaagttgaacttaaaatgaataggaaaacaaacaaaaaattgtatgtgcctgagaaatgttgcaagtctcagaagcacacatttgtgacaaccaaa<br>aatggacagatttcatttatttcatttgttcatatatgctgtttggatgtttgagttgttttctctttgtactgaaatccaaattttccttcctagttga<br>aatcctatcaaactgttgacatggactgaatcttatttgattgctatgtggaaacataacaatgacaacattaattattaagttttggtattcaacaact<br>ttcagtaaatcagaatgatacttgctaagtttaagaatatctgcatatttt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:ARHGAP15:NM:018460:6/14	
0	chr6	13191034	13191035	2000539	0	+	AC206597	NA	NA	LINE	L1	L1HS	ccttgattacttccttactccaaatacagtcacattgggggtgagagtttcaacagatgaatttaggaggtggggggacacaattcagtccacagcatga<br>ctcaaggacaaaaattatctagttcttcaaaaattagtcatatactcaaggcacttggttataaagaggaggatctgagttcagttgggtcgggtttcaa<br>agaacagacccaaaggagacagtttgtgtaagagtcaggagcaggggtaaaccacatgggaagcatctgaccacagttagagattactgacacttcagca<br>aagaaaggaaactgaggcttatccttgaaaacaagtcctactgataatacacacctacccaggacttatttgcacagtggtt<font color="green"><u>AGAATTCAAAATACAAGG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATTATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACCCAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATTCAAAATACAAGG</u></font>aaacttaatatattctcagaacttagttgattgc<br>tcatttcaatgttaccaaagtattcgctactacaactttgcctgacaaatggtgtccatgacctgtgttattttcagccccagcatgtgtacctgtgtaa<br>caagaatcctctctccatgcttgaccaatattcctggttatagccatctctctagttttgtggactttttcactgttctacagtcacatgctgctgcgta<br>atttcattatgtgtctctgtttttctctgatgctctctctcccccattgatccccacattcccaaccctccatgtcctcctctccaaccctccagaacca<br>cctggctacttctgcctctgtccctgccttccctcccagtaatcccag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PHACTR1:NM:030948:6/14	
0	chr1	84517940	84524629	2000540	0	-	AC207443	NA	NA	LINE	L1	L1HS	acaaaagattagtcaaagatctaatattatttaaatataaataacacctacaaatcttatttacaagtaagatgaaaagtggtaaagaaaattagcagtc<br>aaccccaaaacagccaaaaaatacttgaaaagaaattcagatttatacatgcaaaataaaataataataggataagattctctacatatctgattcataa<br>ctaccataaagaatgataacactttatctaagacttgttaatatatgtgttaaaaggtatttttatattgtatggaagagaggattaatttgtatgattc<br>acttggagaacaatttgacatcctatttctatcaatgtattataaaaaggtggaaagcaaaaataatgagttaataaatataacat<font color="green"><u>AGAAAAACAAATCA<br></u></font><font color="red">GGGTGGTCTCTTCACATGGACGCGCGTGAAATTTGGTGCCGTGACTCAGATCGGGGGACCTCCCTTGGGAGATCAATCCCCCGTCCTCCTGCTCTTTGCT<br>CCGTGAGAAAGATCAACCTACGACCTCAGGTCTTCAGACCGACCAGCCCAAGAAACATCTCACCAATTTCAAATCCGCCACATCTCCAGCACACAAGAAC<br>TTCCAAACGCCTGAACTGCAGCGGCCAGGCGTTCCTCCAGAAACTCCTCCCCCAGGAGCTCTCTACAAGTGCCAGAAATCTGACCACCAGGCCAAGGAAT<br>GCCTGCAGCCCAGGATTCCTCCTAAGCTGTGTCCCATCTGTGCGGGACCCCACTGGAAATTGGACTGTTCAACTCACCTGGCAGCCACTCCCAGAGCCTG<br>TGGAACTCTGGCCCAAGGCTCTCTGACAGACTCCTTCTCGGCTTAGCGGCTGAAGACTGATGCTGCTCGATCGCCTCGGAGGCCCGGTAGACCATCACAG<br>ACGCCGAGCTTTGGGTAACTCTCACAGTGGAAGAATTGTAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCG<br>ACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCG<br>TGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCT<br>GGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCT<br>ACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTT<br>GCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGG<br>GCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGACACCAGTGGTTCTCCCAGCACGCAGCTGGAG<br>ATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGAGGCACACTGACACC<br>TCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTG<br>TACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCC<br>TCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTAC<br>TCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGT<br>GCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATC<br>AGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTAT<br>GTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACT<br>TCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGT<br>CAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGAT<br>CTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAAC<br>TAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGA<br>AGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGA<br>GCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACA<br>GACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTATATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATG<br>GAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCTTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGAC<br>AAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAA<br>AGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACA<br>GAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACA<br>TTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACT<br>ATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGA<br>CTACTGGGTACATAATGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAA<br>GCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAA<br>AGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAAT<br>CAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACA<br>ATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATC<br>TAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGT<br>GGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTT<br>CTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCA<br>AAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTAT<br>CCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAA<br>AACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGT<br>ATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACA<br>GGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAA<br>GAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCA<br>GCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATT<br>CACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATA<br>AAAGAGGATACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCA<br>ATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTC<br>AATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAA<br>AACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAAT<br>GGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAAT<br>CAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAG<br>GACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTA<br>CCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACA<br>AATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATG<br>AAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAG<br>GAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCG<br>ATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACA<br>TGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACA<br>TATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGGCATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATC<br>GCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGA<br>CTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTA<br>TACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAA<br>AAAATTATAAATAAAACAAAGAAGAATATGTGAGAGGAGCTGAATGTGCCCCATAAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAACA<br>AATCA</u></font>acaaattagaaaaaaattgactatataaacaaatccaacccttgtagcttcaaaatgagatacacaataatttaggcaaagactttaccagccta<br>gtcatgatccaaaaaaggatgagactatcactagatccccaaaaatgccaaaatgttgcggtcccaaagaactgcattttgacagaatagaaaaattaac<br>atagtttggggttgctatggtttgaatatttgtatttccttaaaaattcatgtggatatttaatccccagtataacagtattaagagatagggccttcag<br>gaggagatctagtgccttataacagggctggagggaactagctaggcccttttttgcccttccccctttcatcatgtgaggacacagcaac	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr17	64637295	64637296	2000541	0	+	AC209294	NA	NA	LINE	L1	L1HS	atagctccagaagtaatagctttggtggaaaccgtggtatgtgcaaatttcaccccataaatagaggaaacataggtattcattatattaaaacatgatg<br>cgggccaggtgtggtggttcacgcctgtaatcccagcactttgggaggccaaggctggtgcatcacctgaggtcaggagttcgagaccagcctggccaac<br>atggtgaaaccccatctctactaaaaatacaaaaatacccacatcgtggtggatgcctgtaatcccagttactcaggaggctgaggcaggacaatcgttt<br>gaacccaggaggcggaggttgcagtgagctgagatcgcgccactgcactccagcctgggcgacgagcaagactctgtctc<font color="green"><u>AAAAAACAACAGTAAATATC<br></u></font><font color="red">CGAAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCC<br>TACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGC<br>AAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAA<br>CAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCC<br>ACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTC<br>TCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCC<br>AGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATC<br>CTCCCTAACTCATTTTATGAGGCCAGCATTATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACA<br>TTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCA<br>AGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCC<br>TTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCA<br>CAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGT<br>GTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATG<br>ATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAAT<br>CACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAAT<br>CCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGC<br>TCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCA<br>CAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAC<br>ACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCC<br>TCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGG<br>AAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACC<br>TAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACA<br>AAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGA<br>AAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAA<br>GTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATG<br>CAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAG<br>GAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGA<br>CCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATA<br>GCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG<br>ATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACT<br>CATAGGTGGGAATTGAACAATGAGATCACATGGACCCAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCAAAATACAAGGAAACTTAATATATTCTCAGAACTTAGT<br>TGATTGCTCATTTCAATGTTACCAAAGTATTCGCTACTACAACTTTGCCTGACAAATGGTGTCCATGACCTGTGTTATTTTCAGCCCCAGCATGTGTACC<br>TGTGTAACAAGAATCCTCTCTCCATGCTTGACCAATATTCCTGGTTATAGCCATCTCTCTAGTTTTGTGGACTTTTTCACTGTTCTACAGTCACATGCTG<br>CTGCGTAATTTCATTATGTGTCTCTGTTTTTCTCTGATGCTCTCTCTCCCCCATTGATCCCCACATTCCCAACCCTCCATGTCCTCCTCTCCAACCCTCC<br>AGAACCACCTGGCTACTTCTGCCTCTGTCCCTGCCTTCCCTCCCAGTAATCCCAGTGCAATAAAACCAAAGATTAGACCACTGTGAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACAACAGTAAATATC</u></font>taaaatatttagtggcgaagtcaccaccacccattgtgtgact<br>ccagagaatgatgcacagtctggtgttatcgaaccttgacttggggctggggagtggtggggcctgagcttggcttaatctaaaaacgtggtcctttcat<br>gactaaaatgagcattgtgcttcttctcctcccaggaccccaggagcaagcacaagttcaaaatccacacttacggaagccccaccttctgcgatcactg<br>tgggtcactgctctatggacttatccatcaagggatgaaatgtgacagtaagtaagttttcttttccagttcatagcgaggctctgtagctcatgctcag<br>ggtttgctgagcaaggaaggctcagtaacttttcaac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PRKCA:NM:002737:3/17	
0	chr22	17246066	17246067	2000542	0	+	AC209341	NA	NA	LINE	L1	L1HS	aaagaagacctctaggatggattggtagagaactgctggcatattgagccctctctctttgtatctggaactttcataattaccttagttctccatgcca<br>attttgcaattatctttgttctccacttcaaaatacatttatctctaacagaagctaagtacataaaagggaccttgtccagtggtacttatgaggcagg<br>agatgtgatatatttaaaattataaactaaaagctttctgacaccaaaagcataagtaacaaaacaaaaaataagtaaattggacatcatcaaaatttaa<br>aacttttgtgcaatcagaggacaaccggcagaatggaagaaaatattttaaataatatctttgataagggatcaatatccagaatatat<font color="green"><u>AAAGAACTCCT<br></u></font><font color="red">TGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCAGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCATGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAATCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCTTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTGAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGTCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGATGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA</font><font color="green"><u>AAAGAACTCCT</u></font>acaactcagcaataaagaaacaacccaattaaaaaata<br>ggcaaaggacttacatagaaattttcccaaaaaagatatacaactggccatcaagcccatgaaagacgctcaacatcactgattactaaggaaaagcaaa<br>tcaaaaccataataagataccacttcatacccattaagatggcaatcatcaaaaaaccagggaataataagtgttggtgaggatgtagccaaattgaaac<br>tcttgtgaattgccagtggattctacagtggtatagtcatggtggaaaagagtacagcggttcctaaattaaaaaaaaaaaatggaacataggctgggct<br>cagtggctcatgcttgtaatcccagcactttaggacaccaaggtggccaga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	149814499	149814500	2000543	0	-	AC206420	NA	NA	LINE	L1	L1HS	taaaaaatttaaaactgataatgccaactgttgctgagaatgagcaatgactataacagtcaactactactggagagagtgtgaattattactgtcgttt<br>tggaaaaatctttagtagtatctactaaagtagaatatttcacaccttatgacctgctcccacctaacagaaatgaggacatatattcacccaaaggcat<br>gacaaccaatgtcatagtaactttatttataatcaccccaacatgaaaataatccaaatatccatcaacaatagaatggatacctataagccatattcat<br>acaatagaatactatataactgtgaaaaatgaactactactacacctaacaatgtagatgaagttcacagataaaacgctgtatg<font color="green"><u>AAAGAAGCCAGATAC<br></u></font><font color="red">GGGGAGGAGCCAAAATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAAAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCCCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCACTGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGACCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGCCAGATAC</u></font>aaaacagtactg<br>ggtgatttcattttcaaataattcaaagacaggcaataacaatctatgttgatggaagttagggtgacaattacccttgagagttcggtgttgactgaga<br>gggtcaaagagagaggcttccaagatcctgggtggtggtcacatgtgtatatatatttataaaaaaaaattagttatgcacttaagtttatgtattttac<br>tatattatattcaataaaaattgagttaagaaaaacaaactgatggagaaagaaatcaagtcagatacaagaatttccagatgcagaataaactagggtt<br>actaagagagatactgaatttttgtgccctgaggtttattgttttttttttttttttttttttttactagaac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:KIF5C:NM:004522:10/26	
0	chr14	67419882	67419883	2000544	0	-	AC207437	NA	NA	LINE	L1	L1HS	tatccatatgcaaaagaatgaagttgaagccttgccttacaccatacacaaaaattaagtcaaaatggatcaaatacctaattgtattataagagctcaa<br>ctatcaaattctaagaagaaaacataaaggtaaatcttcacgactttggtgatggatttttagatatgacaccaaaagtacaagcaacaacagaaaaatt<br>agattaactggacttcattaaacttaaaaacttttgtgcaaaggacattatcaagacagtgaaaagaaaaaatacagaaagggaggaaatatttgcaaat<br>catatctctgatagagtccagcatccagataatatgtaaagaactctaacaactgaataataaaaagaccaacaacccgctt<font color="green"><u>GAAAATGGGCAAAAGGTG<br></u></font><font color="red">GAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACCAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCAAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACTGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGAACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCCGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCAGGATTA<br>AGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTGTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACTAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGAAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCACCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAAC<br>CATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATC<br>AAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC<br>TTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGC<br>CATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAG<br>ACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGT<br>TCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACGATCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTCATAGG<br>TGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAGAAAGGAAAAAAAAAAGAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAATGGGCAAAAGGTG</u></font>tgaat<br>aaacatttttccaaagaagctacacaaatcatcaacaagtatatgaagagatgttcagcatccttagtcattagggaaatgcaaatcaaaaccacaatga<br>gatgccatttcacacccattcagatgataagaattaagaaaaaaagaaggcccggtgcagtggctcacacctgtaatcccagcactttagggggccgagg<br>ctggaagatcatgaggtcaggagtttgagaccggcctggcaaacatagtgaaaccccttctctactaaaaatacaaaaaattagtcaggcgtggtgccgg<br>gcacctgtaatcctagctacttgagaggctgaggcaggagaatcacttgaacccgggaggctgaggttgcagtgagc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:GPHN:NM:020806:8/23	
0	chr17	33135427	33135428	2000545	0	-	AC226751	NA	NA	LINE	L1	L1HS	ttttaaattttttgaaatgaagttttgctctcgttgctcaagctggagtgtaatgacatgatctcagctcactgcaacctccacctcctgggttcaagct<br>attctcctgcctcagcctccctagtagctgggattacaggtgcgcgccaccacgctcggctaatttttgtatttttagcagagacagggttttaccatgt<br>aggccaggctgatcttgaactcctgacctcagataatccgccctccttggcctcccaaagtgctgggattatagtcatgagccactgtgcctggccaaaa<br>ttactatacacttctaaacaaccagatctcatgagaacgcactactgcgacaacaggaccaagaaggatggtgctaaacaagtcat<font color="green"><u>AAGAAACTGCCCCC<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACTGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGAGGGTT<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCAGGATT<br>AAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCGTCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGC<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAACTGCCCCC</u></font>atgatccaatctcttcccacca<br>gccccacctccaacattgggaactgaacatgagatttgtgtggggacacagatccaaaccatactgctgtccaattagaaggataatccattcatgcatg<br>aaggatcgtaaggcaacgtgtgtgagaaatagcacagacttgctgaggagcttcaaagtaagaaacacatagttgtggggataattagggaaaggttctt<br>ggagaaaactgggctttgatttgaattggtggaggggaggtgggagggcatttccagtaggaggaacagtaggagcaaaggcagggggcaataggtgttt<br>gttgggagggggcagtgaagaggctgctccattttaatcagctcctagaactggaaagactgtt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	38626083	38626084	2000546	0	+	AC211854	NA	NA	LINE	L1	L1HS	ccttccctcttcagcattgcctgtttatcaggtcagctccaaaatctcttccagaaagatttccttgattttcctagctgaatgggaacagtaccatggt<br>ctcctccttaatggttctgatcactctgactagtctgagagttatttcaggcctgtttgaactctctacctccccaataatctcttaagctggtgaatga<br>tgtcagggctggcgctagacctcatttgcctctgtattcccaacagcatgtggcacaatgttttccatgcaataagggcttagaaaatgtttaagataaa<br>ttgaaaaaacatgtgataattcattgatagtgtatgacagtaaaataatgggtagatgaacagataagtaaatgaatg<font color="green"><u>AAAACAGAATGAGTAAATAATG<br></u></font><font color="red">GGAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATACACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGTAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACGTATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAATTATAAATAAAACAAAGAAGAATATGAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>ACAGAATGAGTAAATAATG</u></font>aataaataggtaagtaagtgggtaaatgaatgaatgagcaaaatgcagtgaagaggccaggcacagtggctcacacctgta<br>atcccggcactttgggaggccgaggtggcggatcacctgagctcaggagtttgagaccagaccggccaacatggtgaaaccccgtctctactaaaaatac<br>aaaaaattagtcaggcgtggtacatgcctgtgatcccagctactagggaggctgaggcagaagaatcacttgaacctgtgaggcagaggttgcagtgagt<br>cgaaatggcgccattgcactctagcctgggcgacaagagtgaaactcagtctcaaaaaaaaaaaaaatgcggtgagtgagtgaatggatggatgggt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SCN5A:NM:001099404:16/28	
0	chr3	55788580	55788581	2000547	0	+	AC216710	NA	NA	LINE	L1	L1HS	caccgatctctacagataagaaaactattttttttttgagaaaactatttaaaaaaccaggagagaaaatattttattttctgttttctgtacttttatc<br>tacagattcaatacatttctagtgtttaccatggtatcacaattccactgccacaggcttaagcaaatgtaaattggagagggaaaattaatttttcaga<br>taaatgcaaaaagaactgcattataaaaatgacagtgtaactaagacatttctactctagattttggcttccttttctttaatcacctagcaggattctt<br>ttggatatccaaactcaatatttcaacggctcttcagagccaaaaagctttctgcaaaggattaaagaagtagcaaaatgtcattat<font color="green"><u>AAATATGAATTTA<br></u></font><font color="red">AGGAAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACACCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACAAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTGCCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAAT<br>AGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAT<br>GATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCAC<br>TCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAGAGTATAATAAAAATAAATAAATAAATAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATATGAATTTA</u></font>atttgcttgagaaaaaaaccct<br>gcgtggctatgacagttatccattcttacataaaaaaaaaaatttaaatctcacaagagtaatagaaaaatatcaatgaactgctatgatcaaataaatg<br>aaagtcctatcaatttatttgtagtttctctttgaactacaaataacagatgctaaatatcttcctttgtccattaaagaagtctgagattcttaggttt<br>ttctatcctaaacagcgcaacatgagccatgacaattcttcactgaaactgaattaatttagcttttagcttaaaaaagctaaagtatctataacccata<br>agctgtactaatatagcaaaataactgtattgtattcttaagtgacagctgcattctttaggtca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:ERC2:NM:015576:13/17	
0	chr10	124455232	124455233	2000548	0	+	AC214986	NA	NA	LINE	L1	L1HS	tagacagtgagtaagtgcatcatgcatctcaaatggtgaaggtgctggctggactcagggtgagattgttagggaaacagggtgacaccattttaaaatc<br>aactccatctttaaactagcaaggcacattccttgctggtcatgacccatggtcatgaaatgtttctggctgaggaaactcctactacaatgaaatgtcc<br>agatgtcccgatatcacataataatatatgctttttagatgattctagacatgctttgatgtacctacacactaaaataccaaaaataactttctttaaa<br>tcaacaaagtaatacattttgtcacgctgttagcccaccctcacattgtcatagcttagcttttacatagataagacccttgtat<font color="green"><u>AAGAAAAACTTAAAG<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTGTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCATCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACACAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACTATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGACTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATGTCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGCAACAACCGGTACCAGCCACTG<br>AAAAATCATGCCAAAATGTAAAGACCATCCAGACTAGGAAGAAACTGCGTCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATCCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAAACAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGACAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAACTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCCGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAATTTAACAGATCTCTCCACACAAAAAAAAAAAAAAAAAAAAGAAATGAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAAAAACTTAAAG</u></font>atgatgcattcctctgcttgctttctgaggacgccccactctgtaactgagtagctttcaataagctatctcttctctgtgcttt<br>ctgcaactcaccttgaatttcttcctacacgagattcaagaccctctcttggtgtctggatcaggaccccctttttcggcaacaagagttctgtcttttg<br>gggaaaaaaaatcctcatttcttctagacgtctaaaaatgcttcacttcatatttacacctggaactcgagtctgacccataagatacttaggagggtga<br>gggcccacgtctctgtgcagcttagggtctggttgtcccccaactcctattgcccactgattaatgggcactccagtttttcactgaatagctcagcatc<br>	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr8	123643885	123643886	2000549	0	+	AC204967	NA	NA	LINE	L1	L1HS	agtgcactggcacggtctcggctcactgcaaccttggcctctcaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgtcca<br>ccaccacacttggctaattttttgtatttttagtagagatggggtttcactgttggccaggtttatctcaatctcctgacctcaagtgatccacctgtct<br>cagcctcccaaaatgctgggattacaagcgtgagccactgcacctggctggagttaagccaagatgcatcatgaggtccaactgagattcatttgtactc<br>ctgaaaaagtataaggaaaataataggtgaatagaatattaagtgtaatgtctctttcagtaagaatagtctaggttgtgctgcagtaacaaac<font color="green"><u>AATCCC<br></u></font><font color="red">CGATTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATCTGAG<br>GTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACC<br>TGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTT<br>TTCAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAG<br>TCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTG<br>GGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCA<br>GACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTC<br>CCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCCAGCAGGGGCACACTGACACCTCACACTGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAACTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATTCTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATAT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAACTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAGAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGCCTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACCGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAAT<br>AGCAAAGACTTGGAACCAACCCAAATGTCCACCAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAT<br>GATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCAC<br>TCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAAAGTATAATAATAATAATAATTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATCCC</u></font>aaaatctcag<br>tggcttttaacaacaaatgtttatttcttgctcacactacattttcattctgagttgggagggtgcttggctcctgtgcatcctcacctagtgtgtcagc<br>cagggaaacagaactcatggggtatatacatggaaagagatttattttaaggaattggttcacatggttgtgaagctgagaagtctcaaatctgtaggac<br>acaccagcaggctggaaattcatgcagggattctatcttgcagtcttgataagaatttttttctctttgggaaactttggtctttgttcttaaagccttc<br>aactgattagatgaggcctatccacgttatggagtatcgcctgctcaaattttactgatttaaatgttaatcttatctaaaagt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	32004352	32004353	2000550	0	-	AC226130	NA	NA	LINE	L1	L1HS	tccatgaaaaataaaaaagattagctaggagtggtgtcacatgcctgtagtcccagctactagagaggctgaggtgggaggatctcttgagcccaggagg<br>tcaaggctgcagtgagctgtgattgtgccactgcactccagcctgggtgacagaaggagaccctgtctcaaaaaaaagaaaaaaaaatccattgattata<br>catccatataattttttctttttacacagtagttcctgcatggagcttggtgtctggcatacaagtctcttcataaacatttgttaaatcagaggttagg<br>tgaacgacagcattactgtcttcctgaacttgggcaagtgatttaacccgtcagtgcttcactttccttttctataatgacttctt<font color="green"><u>AAAAAAATGAAATA<br></u></font><font color="red">GAAGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAACCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATTATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACCCAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCAAAATACAAGGAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAAATGAAATA</u></font>atttccatctgtctcagctaatacttttgtaaaataccgtgaaatcaggcaggggagtggggcagagtggccttgc<br>aatggtcggggtagggctgctgagctgagggctagctgggtgaggcagctgagtgtgaggtaagaaagaaggagcgatcctccaaggtttatataaaatt<br>ggtcataggataacaacttctgagatcccagcaggagtcctaacatctagcagcttgaccaccaggacaccggcctcctaaaactaatcccaacaagcac<br>ctgtaaagtcttcacaggtgaagcctaccttttcagatagtccaacagctaaatcaccagttcccaaggccatttgcatcacccatggaaaacaccggat<br>ccttatacac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	156527850	156527851	2000551	0	+	AC217417	NA	NA	LINE	L1	L1HS	atatcttattgtgtttttagtttgtatttctctgatggttagcaatggtgagcatttttttcatgtacttattggccatttttatgtcttattttaagaa<br>tggtggcacatacctgtaatcccagccctttgggaggccaaaggcgggtagatcacctgaggtcaggagttcgagaccagcctgactaacatggtgaaac<br>tccatctctacgaaacacagaaaattagccaggagtggtggcgggtgcctggaatcccagctacttcggaggctgaggcaggagaatcacttgaagccag<br>gaggcagaggtttcagtaagccgatatcacaccactgcactccagcctgggcaacaggagtgaaactctgtcaaaaaaaaaaaaagaaag<font color="green"><u>AAAGAAAGAA<br></u></font><font color="red">AGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACCCAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAATAAATAAAAAGA</font><font color="green"><u>AAAGAAAGAA</u></font>agaaagaaagaaagaaagaagaa<br>agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaaagcaaaatgtctattccggtctattgcctattttttgaatt<br>tggattttggttttcttgctattgagttgtttgagttccttatatattttgagtaataactccttatcagatgtatgctttgcaaataaattttcccatt<br>ccatgcatcatgtcttcgttttggtaattatttcctttgctgtgcagaagctttgtagtttgatgttatcctgtttgtttttgcttttgttgtctgtgct<br>tttggggttatatctcaaaaaatcactgcccagaccattgtcatgaagattttcccctatgctttat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	43887577	43893639	2000552	0	-	AC216092	NA	NA	LINE	L1	L1HS	gaaaaatgagatactagaaaaattagtgcaaaacacatctgataaaagacttgtatccagaatatataaggaatttttacaattcaagaatacaaataac<br>cccatttttaaaaatgctaaaaggatttagacagatactttaccaaaaaataaatatggatagcaagttaaatacgtaaaaagatggtcaacatcattag<br>tcattagagacatgcaaattagaactaaaatgaaatacaactacatacctattaatatggctaaaattacaaagattgaatatgccaaatggtggtaaaa<br>ctgcagagcaagtagaacactcaagcattactggtaggaatgcaaaatggtacagtctccttagaaacagttcggcagtttctt<font color="green"><u>AAGTTAAACATATGTT<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCAGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGGGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTTACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGCACCTGGAAAATCGGGTCACTCCCACCCGAATACTGCGCTTTT<br>CAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTTGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAGCAAGGCTGGGGGAGGGGAGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCGTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCGGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAATGGAAC<br>AAAGCTGGATGGAGAATGACTTTGACGAGCTGAGAGAAGAAGGTTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTGAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGCGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCTAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATGTAAATGGACTAAATTCTCCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTGAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCATCTC<br>TGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATATGTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACAACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGTAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGGAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTTGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTCTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATACCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGAATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCACAGTGAACAGGCAACCTACAGAATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCACCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTATACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGTCACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGGTGGCATTG<br>GGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGCGCACCAGCATGGCACATTTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAAAGTATAAAAAAAAAAAAATAAATTCCTTAATTGGCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTAAACATATGTT</u></font>taccatagacctataaccct<br>actcctaggtgtttacttaagagaaataaagacatatacatccaaacacctgtatgtgaatgtttacagcagctgtattcgtaattgccaaaactggaaa<br>caacccaaatgaccatcaactagtgaatggataaacacatcatggtgcacacgtacaatggaatactactctacaataaacaggaacaaactatagatac<br>agacaacactggtgaactcaaaagcattctaaacgatagaggccattcactaaaaactatacactttatgtcatactatatgatgctctaaaataggcaa<br>aactaaaggtccagaaactatatcagtgattgccagggcttagagtttgagaagaagacagact	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:PLEKHH2:NM:172069:2/30	
0	chr10	5287318	5293345	2000553	0	+	AC216090	NA	NA	LINE	L1	L1HS	ctcgctttgagttcatgggcacctggctgtgtaaagtgtggcacctgccccctcactctcttgttcccactcttgtggtgtgagacacaggctcccccct<br>taccttccgctgtcactgtaagctccctgtggccctccccagaagcagatgccagcaccatgcttcatgtccagactgcagaccatgagccaattgaacc<br>ccttttctttattaattacccagtctcaggtattctttcatcatgatgcaattgccctattaccatcactcccatatcctagtttcaaggaaggctgttg<br>ttttagtcccagcccaagcgaacatgtgaaaatatagcctcacaaagtgaatatggaactcttattcttatatgcctgactt<font color="green"><u>AAAAAAATAGTGTAAAGT<br></u></font><font color="red">TGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACAGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGTAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCATCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAGGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATATTGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGCTCAACAAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGTGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAACTGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAACTCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACACAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GTCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACATAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATGGTGAAAATGGCCATACTGCCCAAGGTCATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAA</font><font color="green"><u>AAAAAAATAGTGTAAAGT</u></font>ttcctcttcaaagttttccttgtgaaagaataaatcataaatgttagaaatga<br>tagtttcttttaaagactaacttccttcaagcctccttgctttatgctaataactttgttaagccctaggctatacagctgttagacatgctcacaggca<br>agttgtacatcctatgtccttgtaccttaaccaagatatttgtgttggacgtgctcataggcatgccccagctcacagcctatgcccctttcttatttgg<br>gaatattacttttctacctatttaaaaaagcttaaaattagccaatcgggttttaatttagattgtgaggtctggctccagccagcggagacaggacgga<br>cacagcaatagggacctcatgcgtaagga	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	19079466	19085550	2000554	0	-	AC220986	NA	NA	LINE	L1	L1HS	ctcagaacgataaataggcatgtatcacataaacagggagttttttgttctaagcatagtgattggcatatggaaagataagagccctttaaccaacata<br>gtttgtggaacaaaagatattctaatacttctataaagaagatcaaagagtagtaggagattagcctaaagatagaatcagattcagctcatttaggacc<br>taacacatgtaaaataagaatttcatccaattgcgtaaaaccctcaaatggatctccactaatatagaatatactcagtaattaaaaggaatggacatgc<br>aacaccaagaatgaagctcataataattatgctgagtaaaataaaccagtgtatctggaaaatataaactaatctacagtaacat<font color="green"><u>AAAGCAAATCAGTGG<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCG<br>GGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAA<br>GCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGA<br>CCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAG<br>ATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGA<br>GCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAATAACCTCTGCAGACTTA<br>AGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGAC<br>CCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCC<br>TGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAA<br>AGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAAAG<br>CTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTT<br>GAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAAC<br>TACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAA<br>GTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGT<br>GATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAA<br>TACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATACTTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGC<br>AGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCA<br>ATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACA<br>AGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGCA<br>AAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCA<br>CACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCT<br>GTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCAGG<br>GGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAA<br>GAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAGCTACAAAGAGACTTAGACTCCCACA<br>CATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCA<br>CCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCAC<br>ATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTA<br>AGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTT<br>CTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAG<br>AGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAA<br>TAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAAT<br>TGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAA<br>ATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAA<br>GACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACC<br>AGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCT<br>AACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATG<br>CAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTG<br>GTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGAC<br>AAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCA<br>ATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGA<br>AGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGTT<br>TATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAG<br>CATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCAACT<br>TACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGG<br>GTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAAT<br>TGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACC<br>TGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAA<br>ATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACT<br>GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAAAAC<br>CATAAAAACCCTAGAGGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAACC<br>AAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTTTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTT<br>TTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGC<br>GAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTGAGAGTATAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAATAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGCAAATCAGTG<br>G</u></font>ttgcttggggatggaggtgggagtgacatgggagggcaggagagagagatgacaaaggagtgcaaggaagcttttgagattgatggatatgtttactct<br>cttgattgtgggagggtttcatggacgtatttatgtcagaaattatgaaattatacatgttaaacatgtatcatgtattgtatgccaattataccttaac<br>aaagttgtcaaaaattgaacaaacaagcattatgcattgcttttttctgcctaacagctctgtgagaatgtacatagaacccaaaataatagtttcctat<br>tagagtggtgtaagaactgggtgaatggggcccagggaggaaggagatttttcacttaccccttaattcaattaatcaaatattta	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr7	3891250	3891251	2000555	0	-	AC203619	NA	NA	LINE	L1	L1HS	ccagcaacctctcagtgcaccagcggcattaaatagtgtaaaacatacttcaaacacatttttcctattaagcacacatttttctcttatttgtcaaaat<br>ctgtcaggggtatgagaatataccattttatttatagatcatattctttaataataacactttaaatcttatttttcttcctctagggatgtctgaagct<br>atttagccgcttagcttcaatgtccaattcttttccaaaggccgtttcttctgggttcaacctcatttctacctatgaggaaggttttctggtggactgt<br>gtaaaattactgaaaggtgttcccataaatcacatatatcaagcagcccaatgccagtgaatcttacttagtaagtctcctctt<font color="green"><u>AAAAATACACATCCTC<br></u></font><font color="red">GGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCGATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGACAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTGAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACACATCCTC</u></font>ataacactggcatgattggcaagctttttcatccaagatattact<br>gatctcaattattattcccttgagactggtattttcaaaatatagctaaggaaaagggaaaacttggacaaagcaagaacataaacacgcaatgcaaaga<br>agcatattacgcttctatctttatgaaaatataagtataaattagttttaactgagattttaaatatgctaaatacttatattattaacataaaaaggaa<br>attaaatattagtttctaagaaatatgaaaatagaataattccttcattaaaatgttaataacgccaaataattcaattaaaaaagactatatcatgtct<br>tcaagaaagacattgtctctaaaagcttattatttgggg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SDK1:NM:152744:5/45	
0	chr3	186372142	186372143	2000556	0	+	AC216903	NA	NA	LINE	L1	L1HS	aaaagacttcagtgaagggacctttagtgaaggcttgttgcccaggctaagggaaggccaagggatgctgaggcacctggacagcctttgccacccgagg<br>ctgagcaggagcaggagtggctagcttccccgctctgttggaactatcctgtggagaagccgccctgcagaagccgccctggtggagggatgcagcccct<br>gcagaacccggtgctggaacgagaaggagcagggaataagcaccctcccctctccctcccttcctgtttccttccaatctcctcctcccaatggctcttt<br>gaactcaatggtaaactagccagcagggagagcctgggttattcaattccctggagccagcctgggagacaagaccaggcag<font color="green"><u>AGAAAATCAAAGGATGGG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGTGCAAGGGGTCAGGGAGTTCCCTTTCGGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCATGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTC<br>CTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACA<br>AAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAA<br>GCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGT<br>TGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAA<br>CTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGA<br>AGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAG<br>TGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAA<br>ATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGG<br>CAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGACAGTGGGGGCC<br>AATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGAC<br>AAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTGC<br>AAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTC<br>ACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGC<br>TGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAG<br>GGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACA<br>AGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCAC<br>ACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGC<br>ACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACCA<br>CATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATT<br>AAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGT<br>TCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAA<br>GAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAA<br>ATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAA<br>TTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGA<br>AATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATGCATTCCTCGACACATACACTCTCCCA<br>AGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGAC<br>CAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGAAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCC<br>TAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGAT<br>GCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCT<br>GGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGA<br>CAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCC<br>AATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGG<br>AAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTGT<br>TTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAA<br>GCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAAC<br>TTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCATG<br>GGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAA<br>TTGGAAAAAACTACTTTAAAGTTAATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTAC<br>CTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGA<br>AATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAAC<br>TGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAA<br>CCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGA<br>CAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATT<br>TTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGG<br>CGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAAT<br>CAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACA<br>CTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAG<br>CCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAA<br>GACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACGCCATGGAATACTATGCAGCCATAAAAAATGATGAG<br>TTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAG<br>GTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGA<br>GATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTA<br>AAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATCAAAGGATGGG</u></font>cctgaggcaaacagagagaaaccattaggagccttagctggggtttc<br>ccaaggggtgttctataaggcccttctctactggtaaaaggatggggaaggtcctcagactttgtttctccttctatctaccacctcctttgtctttcca<br>tggcttaattcgtgaaaaactagattgttcccatgcttgccacttccccaccacctcttcattccttaggtcacagtaatgtgaatctatctcttttccc<br>ataacccactgacttggtgttccctaacaatcttttattttaaattaaaaaaaaaatttctgttcacttttacttacactttcaagcatctggcaatgct<br>gactttgcttgctcttcagattttttcaaggagat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	94852553	94852554	2000557	0	-	AC216964	NA	NA	LINE	L1	L1HS	ctataaccttcttgtacttggatgttgatatctttctttaggtttgggaagttctttgttattgtccctgtgaataaactttcttccccatctctttctg<br>ttcctaaattttaaggccaataactcttagatttgcccttttgaagctattttctggaagctattttccagatcctgaaggtgtgctgcattgttttaaa<br>attatttttttcttttgtctcttctgtgtattttcaaatagcgtgtcttcaagctcactaattctttcttctgcttgatccattctgctattaaaggact<br>ctggtgcatttattagtacgtcaattgcatttttcagccccagaaattttattgattccttttaattatttcaatctcttttttt<font color="green"><u>AAAAAAAATTATCTG<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCGCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTGAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCGAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCCTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGTATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAATTATCTG</u></font>ttagaattctgaattccttctctgtattctcctaatttttttttttg<br>tttgtttgtttccttaacacagctattttgaattccctgtctgaaaggttacatatctgtctccaggattggtccctggtgccttatttagttcattttg<br>taaggtaatgttttgctgtatggtattgatgctagtaaatgttttttctgtgtctagacattgaagagctagatgtttattgtagtatttactgtctagg<br>cttgtttttacctgcccttcttgggaaggctttccaagtatttgaaaggactgggcgttgtgttctacgctgtatctgctttaggaggtaccccaatgga<br>gtaacactgtagttcttgcagacttctggaagtactgc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr20	9477937	9477938	2000558	0	-	AC209235	NA	NA	LINE	L1	L1HS	attaaacatgaagctggccaggtcacaggacagtcagaatacagaaaaaaaaagtgggaggatctggaagattatatgctctacactcactcagttgact<br>gtatcattcagttttgtttctttaaacaaaatgcatatgttcatgatctcaaatgtttgccaaatgcctactcaacatctatactgggttatataaagcc<br>gtttataactaaacatgtctacaatgggtttttttctttttagagacagggtcttgctctgacactcaggctggagtgcagacacatggtcatagctcat<br>tgtaaccttgagctactgggcttaggcaatcctcacaaatatctgggtctacagacacacaccaccacaaccagttaaatgcaacctt<font color="green"><u>AAAAATAATTTA<br></u></font><font color="red">TAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCTCTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTC<br>CCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGA<br>GGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAA<br>CCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGA<br>ACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAA<br>GAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTC<br>GAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGA<br>AGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAGAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCT<br>GAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTC<br>AGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTT<br>AAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGG<br>GGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTA<br>TAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCC<br>GCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCA<br>AATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAG<br>TGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAA<br>GGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATT<br>CAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACT<br>CCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGC<br>TCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATT<br>GACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCA<br>GGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAA<br>GATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTATATCTAGAAAACCCCATCGTCTCAGCTCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCACTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTACTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACGTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAATTTA</u></font>tagacagggtctcactgtgttacccagactggtctcgaaactcctaggctcaa<br>gagatcctccttcctcagcctcccagagcactgggattacaggtgtgagctgctgtgcccagccttaatggttaattttatctgtcagcttgggtaggtt<br>atggtgctcagaggtttggtcaaacactaggttcgatattgctgtgaaggtatgagatatgattaacatttaaatcagtagcctttgaataaagtagatt<br>accctccgtagtatgggttggccttatccaatcaattgaaaactgtaagagaaaagattgaggtcctctgagaaagtggggaatcttctccaggctgcct<br>tcagactcaagctgtaaagtcaactcttccctggg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	95801858	95801859	2000559	0	-	AC225726	NA	NA	LINE	L1	L1HS	aaagatgtcttcaaaggcaaggaatacaagtggcatatgtttcatgaaagggaaagaaagagaaaggggatgagaatgaaaatggcagagagaaagaaaa<br>tactaatgaaaaaagattcatttcctctcatctagatattctccccagctacaacataacttattggtatgacagcagctaaggatgggtaaaatcatac<br>ttttatcatttcatttttttctgccatagccctttaaatgtttccattacttcacttaaaattattgcatataataacttcaaaaagaaaccagttcaca<br>ttaacaagaaagatctataagtgaaattttggaaaagattccaaacctcctcctatcccccctcaaaaagttctactcttttatt<font color="green"><u>AAGAGTAGAGTTGTG<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCGATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>GAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTAGAGTTGTG</u></font>tactattaatgataataatagtatcagtttatactattaatgataa<br>taatagcagttagcatttattcttattatgtatcaaaacgtctgctaattcttaacacaaacttatgaagcaggtgttactagatgagaaatctgagact<br>accaccccatgttttcttctagtactttcataacttccttttttagcttaattcattgaaccctttggaatgtactccaaataattgttgagaagaaaat<br>ctaactatgtttttcaaatatctacacaggtggtccaaaactaattccaaaactaatttttgaatactccacttgtaccacgtactaaaagcccatatgt<br>atttagagctatttctgtgtatacctgattgtttctaga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr15	35654145	35654146	2000560	0	-	AC209305	NA	NA	LINE	L1	L1HS	ctgagggccacagagaacagaaaagaaagctgcaaagagagctcagtggcttgtaatggttccagagaacctgtagcactgcagacagacactctacaga<br>gtaagagatcacaagcttctgaaaaggaaactggaaaacttctctccttgtgaaattacatgcacaaacccaggaaagaggcatccccagaaaagcttta<br>agaggacccaaaatttctaactgggttgactggtgaaggtcttcccctctgtgaagccactttataaagattggaagagacatttgctttttcaaatgca<br>aaaaatgtaacaaataagacacataaagaaacagggaaacatgacccaatcggaggcccaaaatagatcttcagaaactggctctg<font color="green"><u>AAAAAATGAAAATC<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAACGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTGGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTGCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGCAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAC<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACAATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTTAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGAAAATC<br></u></font>tattaatatgaattacttgacaaagaattcaaagtaatcattacaaagctcaatgtgctgtaagaaaacattaaaataaacaactaaatgaaatcaggaa<br>aatgatgcataaacaaaatgagaaaaccaacaaaggaatagaaagtatgaaaaggaaatagaaaatctggaaccaaagaatataataactgaaccaaaaa<br>attcactggagaggttcaacagcagattttatcaagcagaagaaggaatcaggaaacttgaagtcaggtcatttgaattttttgagtcagagtataaaaa<br>agggagaaaaaaagaaagaagagtgaagaaagcctaaagaacttatgggacatgatcaagcagaccaatctatacagtatgagagt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr14	52667768	52667769	2000561	0	-	AC203592	NA	NA	LINE	L1	L1HS	gtgctgggattataggcatgagccactgcacctggcctgatcttttcaggtataacatatttgtgcatacataaaaggggaaaatataaactatctaaac<br>tggttaaatcactaagattttcctaaaccttcacatttagagtccaactctttgggatcacttttcacttaccagttgttgatatgtcatattttaccac<br>acaacattatccaagatcaagagaactggtaatgcactgcatcttaaaagaatgcttactgctttccccagaatttctttcaagacacttacacccttat<br>acttacgcaagttttgaagtgcgtaagtgggtaattatagctatatgatgatagccacaatcagaaattttaaaatatcatgcaattttc<font color="green"><u>AGAGATTGAG<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGCTTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGTGCACTGTGCGCGAGCCTAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCAAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAGTCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACACCTGACCCCCAAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAATCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCCAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAAACGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCCAGACTAGGAAGAAACTGCATCAACTAATAAGCAGAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAGCAAAGACACCACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAGTAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACAGAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAACACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAGTTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACTAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATTTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACTACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACCATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAGAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAAAAAAAAAAAAAAAAAAAAAGAATGAAGCATGCCTACAAGATCTAGACAATAGCCGCAAAAGGGCAAATCTAAGAGTTATTGG<br>CCTTAAAGAAGAGGTAGAAAAAAAGATAAGGGTAGAAAGTTTATTCAAAAAGATAACACCAGAGAACTTCCCAAACCTAGACAAAGTATCAATATTCAAG<br>TACAAGAAGGTTATAGAACACAAGCAGGTTTAACCCAAAGAGGACTACCTCAAGGCATGTAATTATCAAACTCCCAAAGATCAAGTATAAAGAAAAGATC<br>CTAAAAGCAGCAAGAGAAAAGAAACAAATAACATACAATGGGGCTTCAATACATCTGGCAGCAGACTCTTCAGTGGAAACCTTACAGGCCAGGAGAGAGT<br>GGCATCATATATTTAAAGTACTGAAGGGAAAAGACTTTTACCCTGGAAGAGTATGTCTGGCAAAAACATCCTTCAAGTATGAAGGAGAAATAAGCATTTT<br>CCCAGACAAACAAAAGCTGCGAGATTTCATCAACACCAGACCTGTCCTACAAGAAATACTAATTGGCATTCTTCAACCTGAAAGAAAAGGACATTAATGA<br>GCAATAAGAAATCATCGGAAGATACAAAACTCACTAGGAATAGTAAGTACACAGAAAAGCACAGAATGTCATAACCCTGTAATTGTGGTGTGTAAACTAC<br>TCAAGTAGAAAGACTAAACAATGAGCAAATCAAAAATAATAACTACAACAACCTTTCAAGACATGGACAGTCAATGATACATACAGAGAAATGACAAAAA<br>GTTAAAAATCAGGGGAACAAAGTTAAAGTGTAGGGTTTTGATTGGTTTTCTTTTTGCTTTCAGCCTCAAGAGAGCCTAGGTCGAGAACCCAGTCATGCAA<br>TGCCAGACTTCTAACCTACAGAACTATGAGATAATAAATGGATTTTGTTTTACAGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAGATTGAG</u></font>tct<br>taggattgatgaaaaatatatctgttaggagaaaaataatgttgctaaattcatttgtaaattaaatgactggttccagatttaatttaattttaagtga<br>ccacactttctattgttcaattttaagtcaaaacacacacacacatgcacacacatatatatttatcaaacatctactatttatcctgtgccacagaggt<br>ttagtggagaggttcaggtatagttaaataaagaaggtaagatttgaattggaccctacagaatgaatgaggttacacattttagaggtgggatgtggca<br>ggtagaaaaggaagcaaagaggaacagttgagaaaataaattactgtgatgttaatgactatacagttgcaaatgagataagaacca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr5	76426456	76426457	2000562	0	+	AC220962	NA	NA	LINE	L1	L1HS	cagagtagctatctgcaaaagttgtgttgaaatatagctgtgattggtgtggggaagttagagaaagcaaatttcagcttattataaggttagattagaa<br>acatccaatagttaaactagagtgactcataaagacgttagttctccttcctgggagtcagataaatgccaggtaacatctctcaggaatatacttcggg<br>gcggggaggggagttcctcataatagaaaacccatctagaacacttactttcttccaagtactcttctaagcacctttcccttattatttatttaaccct<br>catgacaaccttatgaaataggcacttcagatccacagcttttatctgaaaaccttaggaccaaaattcttaattttttggatttt<font color="green"><u>AGAAAGGTATATGA<br></u></font><font color="red">AGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACACAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CCAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAATTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTGGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAAGAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGACAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTCACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTGTTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTTGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGTATATGA</u></font>cacatacaccttatggtagaaaa<br>cacccccatggggctgttctccataatcaaatacattgatatttatacagtgaggcatgtgaatttttgcattaaatggaatacttttacatgagttggg<br>ttacgttttgttgccaaatgagttcagatcatctcttcccaccaaaaaattttgaaataattttaggtttttgcattctgaattgtagaaaagagattat<br>ggacacatattgctattgccagtttactcatgaagaaactgaggcagagagattaagtagcttgctcaaagtcatatgacttccacccaggcagaaatca<br>ggtttgagccctgctcttaagcactgtgtggactgcctctccctgtgctcttctgcctcctct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:LOC728723:NR:024398:3/4	
0	chrX	33425671	33425672	2000563	0	+	AC207709;AC231270	NA;NA	NA;NA	LINE	L1	L1HS	gtggggtcagtagtactatctcctttgtcatttctaattgtttttatttggatagtctctcttttcttctttagtagtctagctagaattctattttatt<br>agtttttcaaaaaaagaccccacaactcctgaattcattaattctttgaattttatgtctcaatcttcttcatttcagctctttttgattatcgtttgtc<br>ttctgctaacatggggttggtttgttcttggttctctagttcttttagttgtaatattaggctgttaaattaagatctttctaactttttcatgtgggca<br>tttagtgctataaatttccctgttaacactgccttagctgtttcccagagattctggtatgttgtatctttgttcacattagtttc<font color="green"><u>AAAGAATTTCTTGA<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTACCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGCACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAGAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAACACATAAAAAAAAAAAAAAACAACAAAACAAAGCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGAATTTCTTGA</u></font>tttctgccttaatttcactatttacctaaaagccatttaggagtacattattcaatttccatgtcattgtattgctttgagtgaattt<br>cttagtcttaatttgtaatttgattgtgctgtggtccaagagattgtttttcatgatttcagttcttttgcatttgctgaggagtgtcttactttcaatt<br>atgtggttgattttagaatatgtgccatgtggcagtgagaagaatatatattctattacttttgggtggagagttctgcaggtgtctatcaggtcctttt<br>gattcagtgctaacatttggtattaaatatctttgtaaatgttctgccttgatgatctgtctaatacatttggtggtatgaagtctgtcactattatt	OTHER;OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing;E: fosmid-end sequencing	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic;intergenic	
0	chr5	35815142	35815143	2000564	0	-	AC215801	NA	NA	LINE	L1	L1HS	gatgactattagccatccatgtggaaaatgcggggccattaagacagagaagtttggattttggacgaaggtgggaatagaaatttcagtgttgggagcc<br>tctgtaatacccatgaagtcatggaaatcgatgaatcatccagagcttgactgcagatggagaaggctgattcctggggccctcctaactcagaggttga<br>gcagaagaggaggattcagccaatgaggagacccacaggggttatcatagaagcagcccagccaccaagaatacatcaccattcttgaaacagtttattg<br>ataagtgtcattgaatttgagtcaccaacttatcaagcgaaaagatgaaattgtacatctatctatgaaggaaatatattctatt<font color="green"><u>AAGAAATAATTATGA<br></u></font><font color="red">GAGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCATGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGGAGGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAGAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAGATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAATTATGA</u></font>atagatg<br>atgggaacaaagctttactagcagttcaataatgcagccttcttcttggctattgaaataaacctggaaattttactgcatatggagaaagaactgtaag<br>atgtacctagaagcactgtgctgatgtggagttttggggaaattttcactatatctgcctaatgtagatacctttcatagggagttttcatgacttattt<br>ttgaacatcttgttttggggccttccattttcagaatcacttcaaaatgcattcctgcttactttggatttttactttggatttttttctctctttatta<br>tgaaatattctccaagttaaggaaggttccattttcaatgccgataatgaactggtagggttcatttctatacttaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	downstream:SPEF2:NM:024867	
0	chr7	53652517	53652518	2000565	0	-	AC214812	NA	NA	LINE	L1	L1HS	cagcctgcagggacagtgagagctcagagggcagaagcagatgcctgttttggagggtcgtagaaatattgcagacaatcatcttttcagctgataacta<br>gagtcatctgaaggaaaacacactaatgaaattgtcactgttaagtacctgagcctccattggggccacactcatcaggggagagtgaagctttgctctg<br>acatctaactccacacccactgcccactgtcgtcacgtggcttctctgcccaatccccttctccactcatcctcacatctttttgctaggtaattttttg<br>gctcagatagagaggacttaaaatcctgacttcaggcctatgagtggatatgataagaaaagggcaggtaacaaatatcattttt<font color="green"><u>TAAAAAAACAAATAA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGGGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAGTAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCACCTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAAGAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAATAAAAAAAT</font><font color="green"><u>TAAAAAAACAAATAA</u></font>cacagaaggaaaactcaggaaagaaaaggtgctggg<br>caattccattcccagggtgagaaatgatgcatctcagaatcaaaggctcagagaaacagaaattttacaaactcaggcaggaggagaggaaaatgggccc<br>agcagagctgagaaacaaagcagaagagaaaaataactccagtacagaaatgaaagggacattggacaaaatgaaatggaaaatagatgttgatgcaaat<br>aaagtcaggaacatgaaagatgaccttgttagactcaggtgtaaggggtagaaaagagaagcaaatggtcaaggagtagaataaacatgagagagacgaa<br>aggtggacaccttggcatttgctttcctacggacagggcaacaaaagag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr4	82206577	82206578	2000566	0	-	AC203651	NA	NA	LINE	L1	L1HS	attaagctataaccactgcatccccaaatgggtttgctggtcatctccatagtgaaggccagtgagattctttcccttttattgctttcatgtctagcaa<br>tacctatgcctgtcccaaccacgcccacgagaagcctacctctggcaatgatgctcagtcaacaaactcaaagggatgtatgtcttccatggaaccctgt<br>gacacttcaaatgcttacctgtctatattagattagtactattttagaagattagacttagaagtaatttttagtatattaggattattaatagtatatt<br>attttcatagtatattagattataaattcagcaatatttgaatacttactatttgccagacacttttttagtcctatgaacaataccatt<font color="green"><u>AACAAAACAG<br></u></font><font color="red">GGGATTGAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCAGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACCCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCGGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACTCCTGACCCCTGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTTTTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>ACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAAT<br>TTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCATTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAAAAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATA<br>TGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGTAGTGGG<br>AGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAGAGTATAATAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAAAACAG</u></font>acacaaatctttgtgattgta<br>gaaggttatattctactgggggaaaacaaaataaaccataaccataataaataagtaagttaactaggtgctaagtgctatgagcagaaaaaggagaaca<br>ggacaagtaaatcagtagtgctggagggggtggttataggaggtaggtgacagtttaaaataaggtaattgaccaggcatggtggctcacgcctgtaatc<br>ccagcacttttgggaggctgaggcgggtggatcacgaagtcaggagatcgagaccatcctggctaacatggtgaaaccctgtttctactaaaaatacaaa<br>aaatgagccaggtatggtggcacgcagctgtagtcccagctactcgggaggcctaggcatgagaatcac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	20748905	20748906	2000567	0	-	AC203662	NA	NA	LINE	L1	L1HS	tgtttgcattttgaaacacaccataagggaaaagaaaagttatgaactgtgagaaaacatttttagcaaacatatctaataaaaagccaactctcacaac<br>aaataataacaacagcaacaaaaataaatgaataaaaaatggacattttagcaaagaagagatgtaaaagcaaataatcacataagatgttccacattat<br>tatgagaatgcaaatctaaactacgatgaattaccaccatatacctattaaaatggctacaaaacaacgaaaacgaaaaactgacaataataagtgctaa<br>tgaggatgtggacaaagtagtttttattcattgcttgtgggaaggcaaaatgatatagtcactttaggaaaccaacaatttcttttaaagt<font color="green"><u>TAAAGACAC<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCTGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCTGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCGAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCACTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAAGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTAGGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATACTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGATAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATGCTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCATGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACTAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGCCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGTAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAAAAAAAAAATTATAAATAAAACAAAGAAAAAAAAAAAAAAT</font><font color="green"><u>TAAAGAC<br>AC</u></font>atttaccttattacccagcactcccactcctatgtattatcgtatggcttcacaaatgtctgtacataaaagtttatagcagcttttttcattatcac<br>taaaaagtaaaactcaaacacctatcaattaatgaatgggtaaatatgaatagctttacacctatgcaatggaataaaactgtgcaataaaagcaaagaa<br>ctacagaaaacatgcagcaaattgatctcaaaaggattttgctaaatgaaaaaggaaagacacaaaagactgcacactttatgactctatttatatggca<br>ttttcaaaagcaaaattctagggtcagatatcagattggtagtttcctgggttgggattgaatatggggactgattacagaagtgaaggaaac	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr1	215716045	215716046	2000568	0	-	AC214846	NA	NA	LINE	L1	L1HS	tattataatcatccatttgaggcctgtgcaaaagaacttgtgagctggttatttctggagctcctagtaactgtaaattatcacatttgcctacactcag<br>cctttaagagtttttaaacatttcaattgctttctttttccttgctttaaggtgtctcttagaacaaccaccttatcctttcctgctctaccataagtga<br>aactgtatatgggtcaccttctctcttcatagggcttttcatgccttcaactttagcttacctagttgctttgtggactcagctctatgatggactctat<br>agaaaaatattactcagctttttctcattgttagagtgggagcaacattatcttgtggttctttacatcctatgtggaaatggaact<font color="green"><u>TAAATGTTATTTA<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATACTTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAGCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAGGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTTTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAATGTTATTTA</u></font>aat<br>tataatatcaaattttatattctacattccttaggcatccttctattcttgatttctgtattcattaaataccatttggagaggacaagtcagtgttggt<br>tcataattagcaatgtagacaagcttgggtaatctgggaatactctaggttagaaacaaatgagaaaatttacttttataattcagaagttgtcaatatt<br>taacaggattcgctggccagagagaagatgagacatctttttccctaacagtgatcaaattcatcagttatttttaaaggacaatgaataaaagatgtag<br>aattctaagagatgggcattagtcagaaagctcaacaaagtctctttatgttttatttaatataatattaggaataaccttata	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr6	63368208	63368209	2000569	0	+	AC216098	NA	NA	LINE	L1	L1HS	aaagtttaggggtcagcaaactggcctatgcttcaaatacagcctgttgcttgttttggaagttaacacttcatggaaacacagttccacctattggttt<br>acatgtgcctaaggttgtttcattacaacatagttgagtaattgtacctgagaccacatggctcacaaagcctaaatattcactatttgatcctttacaa<br>gaacagtttgctgatctgtgctttagacttttaatttgaaatttgaaatccatgtcgtgttctcagatatttactacactttctgtttctatcaatttgg<br>aaatatttaatatggttggagtaataattacatatttaacaaatacatcaaaattatttgatagaagcctaagtcctaaatcttgctc<font color="green"><u>TAAAGAGAAACA<br></u></font><font color="red">AGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAACGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCTATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCAACACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGACTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGAGATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCGAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCAGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAATAAAAAAAAAA</font><font color="green"><u>TAAAGAGAAACA</u></font>aatgacaaatgtaagttgtcaccacttatcacaaaattaggatct<br>ttttctataaattctattgtaaaaattgcagtttcatataaatgaattatgtattgttattatggttcaacctaagaatttttctagcctaaaagtatgc<br>atattacgaccaaaacatagttagtaaatgccataaaataacatataactctaatgaaatcaaaatataaaatatcattagctttgttaaaagagtataa<br>aataaactgttaacatggacaaattatattaacttagttacttaattattagaaataatatgagaaatagcattagttacttgagaaatagtgggccatc<br>tattatgtttattacaaaagatgcagctttccaatcattttgc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr12	117814461	117814462	2000570	0	-	AC193146	NA	NA	LINE	L1	L1HS	tctttctagtggagctctacttagagcttcccattgcgtgtactttcagagactttttgtctgaagctggtgcttattctattgcttctattctattgct<br>acatccagaccttctattctattgctacctccagaacttctatcctattgctacctcccaggagcgtggaagactcaccacagcttcccatctcctctag<br>atcctaagtaggcatggatcatggcagagacctcccccgtatcagtcaggaccctggcaggaaagggctatgcactcaaaccatgtaattgaggacagat<br>gaatgaagggctagtttacaaaggtgtggtcaggggcaagggaaaccaacaaggaatattcaagacccaggaccatggggcacctc<font color="green"><u>AAAGAATGAGAGGG<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAACGGGTCAGGGAGTTCCCTTTCCCAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGCAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGATGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAC<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCAACCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTAATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACATTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAGCTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAATAAATAAATAAAAAAAAAAAATAAATAAATAAAAAAAAAATAAAAAAAAAAAGAAAAGAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGAATGAGAGGG</u></font>agagagcagctggcagaacttggtaatgagctatgtggcaaagacagcctttaacagagggacagagccactgctctttcta<br>gcccacagcagaaacccaagagggaataaacccaacctcactctcctcccaccccccattatcctaccaatgttttctattgactgaatccaactggaag<br>agaggtctgttgattgggtcagcctccaagggcacctagcatagtgcagaagtgtagcgaattgacctggaggggcaaaccaacaattgcccgtgcccct<br>tccaggctgaaagatgagaggtggccccattcattaggatttatttggtttcaagcaccataaactgacctggcaaaattccagcaaaggaggaaagagt<br>gtat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	81991007	81991008	2000571	0	-	AC217244	NA	NA	LINE	L1	L1HS	agaaacaagacaaggatgtccattctcaccacttctattcaacaaagtactggaaaccctaaccagagcaattaggcaagaaaaagaaataaaaagcacc<br>caaatcagaaaaaaggaaataaaattgtctctgtttataggtacatgattgtatatttaggaaaccttaagtattccaccaaaaaaaaactgttaaaaat<br>aattcattaaagttttatcatacaaaaacaacatgcaaatgcagttgtttctgtacattgtcaatgaactgtttgaaaaagtatacgataaaatgtcatt<br>taaaatattataaaaacaataaaatatttaggaacaaatttagcaaatgagatgaaagatctgtattctgaaaactaatgatgatg<font color="green"><u>AAATAAGATGATGA<br></u></font><font color="red">GGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGTTCCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CTAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCACCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAATAAAAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATAAGATGATGA</u></font>aataaattgaagtcacaagtaaatggaaaga<br>tatcccatgtttatggatcaaaagaattaatacaattaaaatgcccatactacccaaagcaatctatagattcaatgcaattcctatcagaatttcaatg<br>gcatttttacagaaatagaaaaaacaattctaagatttgggtgaaaccacaaaagaccctgaatagccaaagcaatcttaagatagaagaaccaatctgg<br>aggcaccatgcttcctagtttcaaactttatttcaaagctatagtaatcaaagcggtatggcactggcataaaaacaaacatatagaccaatgcaacagg<br>atagagagcccagaaataatgccaactaatctccaacaaaggtgccaagaataca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	191478715	191478716	2000572	0	-	AC216112	NA	NA	LINE	L1	L1HS	ttgtgttttcttcattaatagctattacaacagaagctactctggggtttttaagaaaaagtgtaatttagacacttagaaatgactttgtttggaaaaa<br>aaggtttttttaagtgcactgtaaaagcaccacatggtctagccccataataattctccctttttgcaaacccaggattcagtgttggctctgcccagag<br>ctcaaagatccagttaaaagatagggaaaaggaggtcttatgaatctataaaatgtacttctattggcatgcctaatatgtctatgtatttatgtcttgt<br>gtacaccatgtttcactactgaaaatatataaaagagttctaattaattggctcaaagaaaaataaaagtgcttaaatacttcaac<font color="green"><u>AGAAAAAGGAAAGA<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCAAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATACTTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCAGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAATCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACGAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGAGCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCTACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAGGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTTTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACTGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAATAAAATAAAAAATAAAAAAAAAAA</font><font color="green"><u>AGAAAAAGGAAAGA</u></font>ctagtcaaatgctttctcaagtttatatgacttaag<br>taaaatctttaatgaataagctagctttaaaaattattggtgaagtaatggctgggcacggtggctcacgtctgtaatcccagcactttaggaggccgag<br>gcgggcagatcacctgaagtcaggagttcaagagcagcctggccaacttggtgaaatcctgtctctactaaaatattttaaaaattagccgggcatggtg<br>gtgggcacctgtaatcccagctacttgggaggctgagtaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagatcttgccacttgcac<br>tccagcctgggtgacagagtgagactccatctcaaaaaaaaataaattat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	10042453	10042454	2000573	0	-	AC210891	NA	NA	LINE	L1	L1HS	aaacttgggtgtccctccctgccccaaataatcttgtaaaatgctcttgacatcttttgtcatgtctgttcacctgtaatttggattttactagaacatg<br>tactagttttagaaaatgtatccaacagttttcacagtatactctttaataggcatttttgaaaactgactaaaatgatcctgggccatcagctatcaac<br>actttgtttccacagttaaaccacattaatcttgtatcatttgtgtttgtacctttttctatgcatgctttctttttacttgtccatggttaactttggc<br>cagttttttattagctattgatgggtcagtatgtctccatcgatgatctctgatattaaatatagggtttttttttaaagttctt<font color="green"><u>AAAAAAGTTTTTGTT<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCCTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAATTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAAGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCCGGAAGCTTGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACAAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCAATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACTCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGGTAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGATTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGAACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATATAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTATAAAATGGGAGAAAA<br>TTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTGTGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTAAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAATAAAATAAAATAAAATAAAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTTTTTGTT</u></font>cagtttgtcttacaaatattattctt<br>actttgtacataaaagttattaaaatgttgactgtagccattccttgctattcagcaagttgtttcagttttaaaatgctttaatggaaaacctttggta<br>gtctcacttttgtctttccctggaaaaacttctctctgtgatactatgtgattatttttgaagtgataatgttactggcagtgaacccataggagtctgc<br>agcaaaaattgttgcctcctcagaagaaaaaattcagccaaggggcctaaggcagagtgagagaccaaggcaagttttagagcaggagtgaaagtttatt<br>aaaaagctttagagctagaacaaaaggaagtaaagtacacttggaattgggccaagcgg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SBF2:NM:030962:6/40	
0	chr7	8886716	8886717	2000574	0	+	AC207969	NA	NA	LINE	L1	L1HS	tccttccttccatttaatttgctctggttcttctcattttttaagttagaaatgtaggaaagttcaaatacttcatggtataaatttttgtccacatgag<br>gctatagtttcattatctaaatttttatatattgtgtttttattatcattcagtttgaaaattttttaaatttctcttgtgattttttctttgaaacaaa<br>attttttaaagagtattttaaattttctagacattttggaactctcgatactcaatatttgtttctactttaatcccattgaagtatttttcattatttt<br>tgtatgctttgttattaaatgcatacgtgtttagaatgtaaatgcatacaggtttagaatgtttattctctagatgatttgttcctttt<font color="green"><u>AACAATATGTA<br></u></font><font color="red">AGAGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGTGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTATAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAACCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGACAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTCACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTGTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAATAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACAAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCGGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACAAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAACACATGAAAAAAAAAAAACAAACAAACAAAACAAAGCAAACATGGAAATGTTTGTTATTTT<br>AATTGTTATGATGGTTTCATGGCTGTTTGCATGTGTCAAAACTCATCAAATTTGTGTACGTTAAATATGTGAAACTTATTGTATGCTGGTTACACCTCAA<br>TAAAGCTGTTAAATTTTTTTAAATTTAAAAATATTATTTCAAGAATAAAATAACCAAACCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AACAATATGTA</u></font>atgtttcacttaatattttgtaaccttgtttaccttgaagtctactttgtccaatgttaagatatttcagtttttttatgattactg<br>tttgcatgggataactttttctataatatatttctatctttgtttttatatttaaaatttattttcttataaaatatagcatgtaactttataactttat<br>aattttcttaactttaattttctcaacttttataatttcttaactttaattttcttaacttatactgtaaacttataatataactttataattttcttat<br>aaaagatagcatataactttataataaactgattttctgtggaatctagtagtctacaaaatgaagaggttacttctgattcactaaaaatgaatatttc<br>ag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	57521070	57521071	2000575	0	+	AC214167	NA	NA	LINE	L1	L1HS	ccttatctttttgcattttacgatcaaatttaatttgcttatgaaaacttcagatactagaaaaaggggaaatacattccaactgatctgaagactttgg<br>tgtagtagttatgccaaatcagtgattacagtaagataaaattgtacatcaatctaagcatatacatagaaaattctaaacaaaatataatactgtattt<br>atattaaaaaatcaagttgaatttatctgagaaattcaacgatgattttacatgagcaaaactaaaactaaaacccatataatcatctacataaatgcac<br>aacaatgatttagtaaatgtcaactttaatttgggacaaaaattcaagaaaatctaggcaaatcatgaagtcttcttaatctgat<font color="green"><u>AAAAATGATACTTAG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATCTGAGGTAC<br>CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCA<br>GACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAACTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATTCTCCTCAAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATATTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATTCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCCCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATTATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGTACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACCGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAATAATAATAATTAAAAAAGAAAAAAAAAAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGATACTTAG</u></font>aaaatcaactttgagtaa<br>gcattattctaaatagaaaataacacaatattacatttagaaacaggaaccaatcaaggtgctcccaaatctacttttattccatattttacaggatatt<br>ctggccattatattaaggcaaaaattaattcaaggaataactttattaaaagaaaaaataaaattattacctacaatgtgattttaaaataccaaagttt<br>tgaacaagaaattctgttgctgggattcttttccctaggtgcacttgaatatctgcaaataaatatctgatcaaagattatcattttagcattgctcata<br>gtagtgacaaattgagaaaaatatattaataaattctaattagtagagaatttggaaagtaatattg	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr7	105967896	105967897	2000576	0	+	AC216000	NA	NA	LINE	L1	L1HS	tgttttttcaaaagtccattaccaaacaatgattcagggctcctaaactgttttaataaagaaaattttctatttgtcatttctcccatactttgtccgt<br>gagtgggtgtgagggcaggctggacttggaaaaacactttaacatggacttgttgactggattccattattttgtgtgcccagaattcacccatttcctt<br>tcctgtgtataccctcctccttctaggaactgtcctttcttcttctccacatgcttaattgggagctgctaggtgagttcaaatgtaggttagaccctgg<br>ccacaatttgttggtgcaggagtgaacgccggatctaaaatggatcaattgttctcttcccagggaatttggactttggtat<font color="green"><u>AAGACTCAAGTCAGTCTC<br></u></font><font color="red">CGATCACTAATTCAAGCCAGGCCACTGAAACACCTACCAATTTTAAGAAATTCAAATTACTCTCATTTTATGATGGATTAAAACTTCAATCACCTTGAAG<br>GACATCACCGAACCAGTTAATTTATATATTTGAGGATAGAGAGTACAAATGGATCATCTCAAAATGAAAAATATGAGAGGAGGAGCCAAGATGGCCGAAT<br>AGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTG<br>CCAGACAGTGGGCGCAGGCCAGTGGGTGCGCGCACCGTGCGTGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTC<br>CCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCAC<br>CACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAAT<br>GAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGG<br>CCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGACACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTT<br>TGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTA<br>ACTGGGAGGCACCCCCCAGCAGGGGCACACTGATACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTA<br>ACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACA<br>GAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGA<br>CGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTA<br>GAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCCAGAACTACGTGAAGAATGCAGAAGCC<br>TCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAA<br>AAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAG<br>TTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGAT<br>ACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGT<br>TACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAA<br>AAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGACAAGCAAATGCTGAGAGATCTTG<br>TCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCACTGCAAAATCATGCCAAAATGTAAAG<br>ACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTA<br>AATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCA<br>CGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGA<br>TAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAAT<br>ATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTA<br>ACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACAT<br>CTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACTTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTC<br>CTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCACT<br>CAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAA<br>AGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAA<br>ATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAAC<br>TGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAAATTGATGGACCCCTAGCAAGACT<br>AATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCAATCCCACAGAAATACAAACTACCATCAGAGAA<br>TACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTG<br>AATCTCTGAATAGACCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAACCGAATT<br>CTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTCCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGC<br>ATCATTCTGATAGCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATAC<br>TGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGGGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAAT<br>AAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATG<br>CTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAA<br>AACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTACTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAG<br>GCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTTTATCTAGAAAACCCCATTGTC<br>TCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACA<br>GACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCT<br>CTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTG<br>AAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGT<br>TCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAA<br>GGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAAC<br>TATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGC<br>TGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAAACCATAAAAACCCTAGAAGAAAA<br>CCTAGGCAATACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTA<br>ATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAAAAAATTTTCGCAACCTACTCATCTGACA<br>AAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTT<br>CTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCAT<br>CTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGTTGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACT<br>GTCAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATA<br>CCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGT<br>CCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAACGATGAGTTCATGTCCTTTGTAGGGACAT<br>GGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATC<br>ACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGAGAGTGGGGAGGGATAGCATTGGGAGATATACCTAATGGTAGATGAC<br>ACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGCGCACATGTACCCTAAAACTTAGAGTATAATAAAAAA<br>AAAAAAATTTAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTCAAGTCAGTCTC</u></font>tttccagatggctgaacctaccagtaaggtaaaattcaggagctttgggctcctgaa<br>tgctcctaggtttgctgttacaagggtggaagaaatagagacagaaaaaatgatgtaagaagagattgaaggctgctgatggtgttccaggccctggatt<br>tggccgtcactgcccttgccttccatgagacatctcagtcttcggagtcagctagttcagattggttttctgttacttgcaagccagagtgtaccaaaca<br>caggggcatgccagcaacagcagccctgagctctcctgggtgaggttttgaaatttcactcgcaagattccctgcaacattttctcccttctgccagtta<br>gagtttggactcagatcatgtttgt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	169269965	169269966	2000577	0	+	AC211778	NA	NA	LINE	L1	L1HS	tataatagctagaaaatggaaacaatacaaatgtcactcaatgaataatgaataaacaaaatgtggtatatccatgcaatggaaaattattcagccataa<br>aaaggaatagagttctgacacatgctgcaatatggatgaatcttgaaagcattaggctttcaagtaaaagagacccaaaatgctacatactgtgtgattg<br>catttatctgaaatgtccagaataggcaaatccactgggagagaaagtagattagggagggataatgagaagtaactgctaacaggtaaaggcttctttt<br>taggagatgaaaatgttctggaatcagacagtggtaatgcttatacaactttgtgaatatactaaaaaccatgaaattgtatacttt<font color="green"><u>AAAAAGGTATTTT<br></u></font><font color="red">TGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACACACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGTGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACAGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCAGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACCGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGGACATCCACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAATGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGTGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACCTGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATATAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCCGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGACAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTGTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAAAGAAATGGATACATTCCTCAACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAACAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACTGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGGTAAAAACTCTCAATAAATTAGGTATTGATGGGACATATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTT<br>ATGGGTAGGAAGAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACCAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTTTTGTGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATACAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTGGTGGATGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGTATTTT</u></font>atggtatgtcaattatatcacaataaaaagaaatttgagaaacctcttggtgaaga<br>aatcgtagtcaggatttatgtttagttcttcaggtgtgatgaaaactattaatagtctatgcattctttttttgtcaatagatattttgataacatcatc<br>aaaattcttatacctacaaaagccctttggccatttattatataattaatcactttaaaatagcaagagtaataataataatagcaactaacatttattg<br>aatacttactatacattggtcactgttctaaattctttgcatgtattaactcctaaaagagttaaaagaacaactctataaggtgagtactattcttctc<br>tctatttaatataggaggaaactgaggcaca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:MECOM:NM:004991:1/17	
0	chr12	126802943	126802944	2000578	0	-	AC203650	NA	NA	LINE	L1	L1HS	tatatattcctcagaaccaaatataactccaattctacattaaaatggaatatataataaaatataggtatatatacacatatataagcaaatgtacata<br>tatatgtcttaaaacacatacttgaatatagtcgtcaatatgccttctatacattagacaaatatatgaaatacatgcttaatgaattaactcttgatac<br>attttaagctaaaaaataaagtaactgtgaaatctgttcaaaatgcaaatctatccttccataatcacagaagtgtagagatatttaatattaagttgag<br>tcatttatttcaccggaagttgctaataggtgagtccatggatttttcttgcctggaattttattttgtttactctgggaaattc<font color="green"><u>AAAAGAGTACAAGTC<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACAGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGTGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAG<br>GGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACTGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAACGATGGGGATAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATAGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATAATATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTGGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAAACCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAATGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGACCATAGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATACTGGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAG<br>GATTAAAAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGAAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATCGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTTTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAGGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACGCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGTATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGACCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGACAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACCATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTCACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATT<br>GGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTAC<br>CCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAGTACAAGTC</u></font>aataattttgttaattggcagctttcacttaaaaattgagaatgttagt<br>ctctttttaaaaaaatagagtaagtggaaacagtaaatcagcaaccccgcatggcagcagctggctggaactgagtaacgatgtcttacacatcagggcc<br>actggcccaagtgtggctccaccactgagctgactgactgtcagctgtggtttatcttcatacttgcttcctgtccgcacctccctcaaggggggacatg<br>aaagggaacatacgggaatacgtttagaagaaaaacatagggtcaacatagcactttataaaagtaaacaatatgtctataactttaccatacaaaaaca<br>aaacaaaacaatccttcccacccacacatgctacct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr16	27425941	27425942	2000579	0	-	AC215793	NA	NA	LINE	L1	L1HS	atgtttgttcctgcttcaattttagcagaattcatgttgcaatgataggggcttttttgcaaacagacgccttatccttcttagtgcctcaaactagatc<br>ctgttcagacatgttatagcaagttagtacaagtttattttggtgcagaaaaaagtttgaactttatgcatagttttttcataatttgaattttccatga<br>acttttggaagaattcatattaggtagatcctaataataataagtatgcatgttgtaatctctaagataagcacaaaaagaatataaaagaaagtacaat<br>gaacaaactaataggaaaaatggaataataatttttaaaacttgattttctaaaaactagaacaaagaaggaagaatagataggtc<font color="green"><u>AAAAAAGAAAACAA<br></u></font><font color="red">GGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACTGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCACCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAAAACAA</u></font>atagcaagatggtagacataatcccagacacatcagtgctttcattgatgt<br>ctgaaataaaaggcagtcttaataccaaaacttgacattaaaggaaagtagaattacaggtcaatctttcccataaataatctaaaaaatatctgaaaca<br>aaatattaacaagtcaaatctaataatatttataaaaatagataacatattattatcacattggtttatttcaggaatgtaaggttagtatgacatttag<br>aaaccataatcaatttcaccacattaactcaataaacaagaaaatttatattatcatttaataagttcagaaagcacatttaataaattgcaacacccat<br>tcatgatttttaaaacctgtcaggaaagcagaaat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr13	61462345	61462346	2000580	0	-	AC209536	NA	NA	LINE	L1	L1HS	aattaaatgcttattatataaggattcaaggaaagggatacgactttttaaaaatcttcatgtctaaatttaaatacttaaatattaagagaatttgagt<br>ttctttcttagttcatcatttcatgtctaattctcactagtgtttcctagaatgtaaaaattcagcatgttggggaccacaactaaattttccagatacc<br>ccagaaataaatggccagagtgatctttgaaaatcgaaaaatgtggcagcaaccatcatcttctgcatttctcctttctgagatttcatagaaccccaaa<br>gagaacaataaaataagcttaaaacttcctctcactccactttaaatctaatattttatctaatgctggaacagtgtcacacaggttatat<font color="green"><u>AAAAAAGAG<br></u></font><font color="red">GAGAGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGGGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTG<br>AGGTACCGGGTTCATCTCACTAGGGAGCGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCA<br>CCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGC<br>TTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAGTCTCACTGATTGCTAGCACAGC<br>AGTCTGAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAAC<br>TGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAGACAAAAAGGCAGCAGTAACCTCTG<br>CAGACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTATCCCAGCACGCAGCTGGAGATCTGAGAACAGGCAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>GCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGTCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTTGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAA<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGGAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATACTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACACAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCTCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATATACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAACGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTGGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGAG</u></font>aagaaagctattccaccattgtagagcactctagaactaactt<br>tccaagtagtaaatatccaggtcttagactattaattattgcaaagaaaagaagaaactcattcattaaactttctatggttatcaacttaaatcaacca<br>catgccaaacgtcgtgctaagaactaggcatttctgtgctttctactcaaggaatccaatgtagtaaaagaaacaggtgtgaacaaataatgtgatgtag<br>tgtgatgagtgttatgacattggcctgcaaaggaaaccaagaaattgtgtaagagggacactaaatccagacaggaaacaggaggagacttgtgaactaa<br>gcctttagaaaaagcaagagaaagtcaaggaggaaacactgaccaaat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr15	34031852	34031853	2000581	0	-	AC206103	NA	NA	LINE	L1	L1HS	ggacaaaatacaggaccagctcagagatgattctggactcacttcatggtgttaataggttttgggtcaaagttgccatccgcatccactgagatctgtt<br>tctccaatgtggctgtgattctggtatctaaataatctggtggcaaggccccagctatagcactgagacaaggcagggccattcggaaaagatctgggtc<br>atatttctgtgagggaaaaacaaggccacattagtagagaaagcagaaccatgcctttagacagaaccaatcaccaatcagctgaaaacagaaataaaat<br>acgcgcatttatccaggttaaccaaaacgggaaatgtgtaaccccttaaatattttctggtggaaatgcaggtatccttggaaaat<font color="green"><u>GAAATAACACTATA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGTGTGAGCAACGCCGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGGGCTTTT<br>CAGACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACACCCACGGAATCTCGCTGATAGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAAGGGCGCCTGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCATAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCGGCTGAGA<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCCACACCAAAAACCCATCTATACATCACCATCATCAAAGACCAAAAGTAGATAAAACA<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTTGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGGAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAACAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATATGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACGAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTATCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACGCCTATTCCAAAATTGA<br>CCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAATGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCATCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTATGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTAGCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAACAGCTGTCTATGACAAACCCACA<br>GCCAATATCAGACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCGTCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AAATTAGAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTGAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAACGCCGCTTATCTACAACTATCTGACCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAATGTTAGACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTTAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTCAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATCGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACCAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGAT<br>GAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTGTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCACTG<br>GGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAAAGTATAATTAAAAAAAAAAAAAAAAAGAAAG</font><font color="green"><u>GAAATAACACTATA</u></font>aatcctcaagtcaccatttgctttaagttgaaaaatcttaaaac<br>aggtttaaatcaatatctcctaaatgactaatttcaagactacctaagggttaaagtgactaggcgctaggccagaagtgactataaacttgtctgctaa<br>ggatggtcacagaaacggacccaacttataactggagagggcacagtaagctgtgccaagctctgcagtagctgatatgggtcatatgttgacatcatca<br>gcaggctgctcaatatccatcattctctcttgaacccagccagaaatgaatttcagtcgaatggcatggggttgggaagagcttttgatctgcttatact<br>agaccaacgaaatccaggggtaaagaaaatttaagtgcaggt	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:RYR3:NM:001036:50/104	
0	chr1	116548032	116548033	2000582	0	-	AC216900	NA	NA	LINE	L1	L1HS	ggtactctacctacagggttatgctctcagctaaaactcctccttggtcctgagccaacatggactctggaagcttctttctccctgatgctggctgagg<br>agtggaggttgggagtaggagtggtggtatcagtaccctgcctatggaaaattggagtttacctatagtgacctaccatggaatcagtgttcaaaacatc<br>taggagactaaagagctaggacttctcaagcctgcaagacagttttttatgtgctactttgattacaagaatttagttaataaatgtatatactgtatat<br>gtggcagaatttggtctgggatttgctttcattataatgtagtaatagatttattggagagcagacctatagttctcacccatttc<font color="green"><u>AAAATCCTATGGAG<br></u></font><font color="red">GGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTTCATCTGAGGTAC<br>CGGGTTCATCTCAATAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGTGTGTGCGCACTGTGCGCAAGCCGAAGCAGGGCGAGGCACTGCCTCACCTGGG<br>AAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGATGTACCTGGAAAATCGGGTCACTCCCACCCGAATATTACGCTTTTCA<br>GACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTG<br>AGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTG<br>GAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCACTGCAGACT<br>TAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTG<br>ACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACAGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACTAGCAACAGAACAA<br>AGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATACGCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAAGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCGCTA<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTCAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATCAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGAGCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATT<br>GTTTATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACTTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGACTTAAATGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>ACCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGTCTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGATTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTGAGAGTATAATAAAAAAAAAAAAAGAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCCTATGGAG</u></font>atcaatcc<br>taagtaaaaccagggctttttggagaaatgactaatttcatgcttcaggggtgagaggtacaagatgaacttggaatatcttgttatgccaaaaatttct<br>gataggcatatcagaaatgataggcatgtcaaaaggacacaagagggatcccacttccaagaagactaagtaggcatgcttttccttattccttccacta<br>aagaacagaaaccaataaaattcaaaacagaaaaacgatagagaaaaatcaatcaaacaaaatgctcattctttaaaaagatcagtaatattgacaaatc<br>tctataatgactgagaagtaattaaataagaaaaaaagacacaaatgcccaataccaggtaataaaagaagggaaatc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:SLC22A15:NM:018420:2/12	
0	chr1	165553150	165553151	2000583	0	-	AC225591	NA	NA	LINE	L1	L1HS	taagtgaatatttaatgagctagtggaagatgtatacctccacagttaacatgagctttggagtcacacctggttccatcacttactcagttacttgtgt<br>atgaggatacttataacacttggtcataagttgtttgagatataagtttctagagtgtctataaaacctctaatagggtatctggcacagagtcactcag<br>taaatggtagctattaattgagtagaattttgagaaattaccatcaatggcttgaatgtaaagctaaactcaggcacggggaagggcatgggcagtgatc<br>cataaaggagacactttgggcttggggcagcgaggtaagcttgggtagcacccacgggtagaaatgggactcttactctttgtgtt<font color="green"><u>AGAATTATGGTAAA<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGATGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCC<br>TGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTGAGG<br>GTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACC<br>ACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAAC<br>AAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGA<br>AGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGA<br>GAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAG<br>GGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGA<br>AAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAG<br>GAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAA<br>GGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCTATCAGACTAACAGCAGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGG<br>GCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAAGAAAATACTTTACA<br>GACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTACCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGC<br>TGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAA<br>TTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTG<br>TGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAGG<br>CAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCA<br>ACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCC<br>CACACATTAATAATGGGAGACTTTAACACCCCACTGTCAATATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTC<br>TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGA<br>CCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGG<br>ATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGA<br>TGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTA<br>CAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAA<br>GAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACA<br>AAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCAC<br>AGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTC<br>CCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAG<br>GACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT<br>CCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATT<br>GATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAG<br>GCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTT<br>TGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACA<br>GCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGT<br>TGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGAT<br>TGTTTATCTAGAAAACCCCATCACCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCA<br>CAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCC<br>AACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTC<br>ATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACA<br>GAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACAC<br>TACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTC<br>AGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAA<br>AACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCTCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTA<br>AAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAA<br>AGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAATGGGAGAAA<br>ATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGT<br>GGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCA<br>AATCAAAACCACTACGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGA<br>ACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACC<br>CAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGC<br>AAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATATTATGCAGCCATAAAAAATGAT<br>GAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAAATATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCA<br>TAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTG<br>GGAGATATATCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAAAACTTAGAGTATAATAAAAAAAAAATAAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAATTATGGTAAA</u></font>aacacacacaccaagagacggtctgggg<br>aagagcctgccagcctaacaagaagttagcacctttggaggagagctctggttccatcagagaggctgtgtttttggaaggatcctttttgtagaatttc<br>agtacttagcttagtgttcattgcactgacttgaattgcctctgaagtcagagggagtcttcttaatattcttcatggcggcaaatcttccgcttatgag<br>gtggattctacaattcagagccacatctaatgaattaggtaggggataaagccaagtaattctgattcagattaaaagagaagaccaaactagtgtgatt<br>attttttttccccctctggcttaagctggcttttgaaaacaacagtatgagtaagtta	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	36558498	36558499	2000584	0	-	AC217815	NA	NA	LINE	L1	L1HS	attttgttttgttttgcttttgtgtgaagaacacttaacacgaggcctaaacatatttatttaaacatattttaaagtgcacaataccatattgttaact<br>atagatactaggttgtacaacagatctctagaacttactcatcttacataactgaggctcaacaggtataaagattttttatttctactaaagttaggaa<br>aatgatttctgcctctgaattgttttattgttgttgtttgttttgtatttaaagtgaatatattggccgggcacggtggctcactcctgtaatcccagca<br>ctttgggaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctac<font color="green"><u>TAAAAATACAAAAAATTAG<br></u></font><font color="red">AGGGAGGAGCCAAGATGGCTGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCAAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCACTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAGCGAGGCTGGGGGAGGGGCGCCCACCATTGCCCAGGCTAGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCT<br>GACCCCTGAACCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGA<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCATCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACACTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAGGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACTGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCAGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAGGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAACACCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGTGATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAATTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACTCCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGAGGGGAGGGATAGCATTG<br>GGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACC<br>CTAATACTTAGAGTATAATAAAAAAAAATAAATAAATAAATAAATAAATAAATAAAAAT</font><font color="green"><u>TAAAAATACAAAAAATTAG</u></font>cccgggcgtggtggcaggcgcc<br>tgtagtccccagctactcgggaggctgaggcaggagaatggggtgaacccgggaggcggagcttgcagtgagctgagatcgtgccactgcactccagcct<br>gggcaactgagcaagactccgtctcaaaaaataaataaatacataagtaaatttactttatatatgtagtataaatataaaatttttatttagtttataa<br>aatataaatattttatttactttatatatcctcatcctttcacctacctatgctatttttcttcttaatttatttgtcttttaaaaaactttgaagtata<br>ttacacatacaaaatgtttttatgcacagtacgattaatgtttataaagcaaataccca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr9	94416770	94416771	2000585	0	-	AC226114	NA	NA	LINE	L1	L1HS	ttgggatttttaaaccttgcacattccagaggaagggctggcccttggctggctcctgggagaaaagctctaaacccttagaatacccttcctgataaga<br>atgtgcttgtatacctgcccatcttgggccactccagataacttatgctaacaatgtgatttatggtgggggccttgggccatgcagtatcaacttgacc<br>cctggaggagctggagactaactaaggccagtcacttgggccatgcatgtctacaggactgatcccctgtaagaatcctggccactcaggctggtgtgag<br>catctgtggaaggcgatactgcctgcatgttgaaatacattgttgctgggagaatttctatattattctgttcttgcattgctgt<font color="green"><u>AAAGAAATACCTGAG<br></u></font><font color="red">GGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACCGGTGATTTCTCCATTTCCATCTGAGGTACC<br>GGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGA<br>AGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAG<br>ACCGGCTTAAAAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTGGCACAGCAGTCTGA<br>GATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGG<br>AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTT<br>AAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCCCTGA<br>CCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGT<br>CCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCAC<br>AAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAATGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACAA<br>AGCTGGATGCAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAAG<br>TTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGA<br>ACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGGG<br>AAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAAA<br>GTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGGA<br>AATACAGAGAACGCCACAAAGATTCTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATATTAAGG<br>GCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCAGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGC<br>CAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAGA<br>CAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCTG<br>CAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTCCATCAACTAACGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATT<br>CACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGTG<br>CTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGCA<br>GGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAAC<br>AAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGACTCCCA<br>CACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAATGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCTG<br>CACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTGACC<br>ACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGAT<br>TAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGATG<br>TTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTACA<br>AGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAGA<br>AATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATGAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAAA<br>ATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAAGGATAAAGGGGATATCACCACCGATCCCACAG<br>AAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCTCCC<br>AAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGA<br>CCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCC<br>CTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGA<br>TGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGC<br>TGGTTCAATATTCGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTG<br>ACAAAATTCAACAACCCTTCATGCTAAAAACTCTCATTAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGC<br>CAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTG<br>GAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATTG<br>TTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACA<br>AGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA<br>CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCAT<br>GGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGA<br>ATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTA<br>CCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAG<br>AAATAATGCCGCATATCCACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA<br>CTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCTAAA<br>ACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAG<br>CCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACCGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAAT<br>TTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGG<br>GCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAA<br>TCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAAC<br>ACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCA<br>GCCATCCCATTACTGGGTATATACCCAAATGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAA<br>AGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGA<br>GTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCACATATTCTCACTCATA<br>GGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGTGGGGAGGGATAGCATTGGG<br>AGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCT<br>AAAACTTAAAGTATAATAATAATAATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATACCTGAG</u></font>actgggttatttatttatttat<br>tatgagatggagttttgctcttgttgcccaggctggagtacagtggtgtgattttggctcactccaacctctgcctcccgggttcaagcgattctcctgc<br>ctcgacctcccgaggattacaggtgcctgccaccatgcccagcaaatgtttttttttgtatttttagtagaaacatgattttgccatgttgtccagactg<br>atcttgaactcctgacctaaagtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccagcctatttcattttcttg<br>acttatttcactagctaggacttccagtattgtgtcgaatataggagtgtgtattagggttct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr3	131069780	131069781	2000586	0	+	AC226062	NA	NA	LINE	L1	L1HS	gttaatttggtgcctgttgggtactagtactgtgcttagtagtttaagggccttcattggatcttttcactaacttgagagagatagagtgaaagagaga<br>gaaagagagagagagagagaacagagaaagagagatgctcaggttaggtaatttgcttagtcactcagctgcaagaagcagagttggcatttgaaactag<br>gtctgtcgcattccagaatccatactcttaaccagtgtctatcagaattttcaaccatggaactatattagatttgcttgtgaagctttttaaacataga<br>cacatttaaatatactgttaatgaaaaaattattgacacttattgaaatggcaaaaagactgtaatcaggactattttgataggtatc<font color="green"><u>AACAATATTGCA<br></u></font><font color="red">AGGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAATGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACACAGCTGGAGATCTGAGAACTGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCACCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAGCAGACCTGCAGCTGAG<br>GGTTCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAAC<br>CACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGTCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAA<br>CAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAG<br>AAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCG<br>AGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAA<br>GGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTG<br>AAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCA<br>GGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTA<br>AGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGG<br>GGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTAT<br>AGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGTGCTAAACATGGAAAGGAACAACCGGTACCAGCCG<br>CTGCAAAATCATGCCAAAATGTAAAGAACATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAA<br>ATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGT<br>GTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAACAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAAAAAG<br>GCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTC<br>AACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTC<br>CCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCT<br>CTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCCAAAATTG<br>ACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAATCAG<br>GATTAAGAATCTCACTCAAAGCCACTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAG<br>ATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCT<br>ACAAGAGAAAGCAGGAAAGATCCAAAATTGACAGCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCA<br>AGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAAC<br>AAAATTGATAGACCACTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCA<br>CAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACTCT<br>CCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCA<br>GGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCC<br>TCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACAT<br>TGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAA<br>GGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCT<br>TTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCAC<br>AGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTG<br>TTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGA<br>TTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATC<br>ACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATC<br>CAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCT<br>CATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCAC<br>AGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACA<br>CTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCT<br>CAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGA<br>AAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAGACCT<br>AAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAA<br>AAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAA<br>AATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAG<br>TGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGC<br>AAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGG<br>AACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGAC<br>CCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAG<br>CAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGA<br>TGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATAATCTCACTC<br>ATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGGAGGGGGGAGGGATAGCAT<br>TGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTA<br>CCCTAAAACTTAGAGTATAATAAAAAAAAAAAAGAAAGGAAAAAAAAAAAAAAAAAAAAAAAAGAACTTATACATCTTTCTTTTTGGTAGTTTTTGAAAT<br>AAATTTAACATAGCTATAGAAAAAAAAAAAA</font><font color="green"><u>AACAATATTGCA</u></font>atatgggagaggcattgggctcaactctgaagtttctttgctgaagcaaagaaaact<br>agagattaatagccaattagcaggatacgggccttggtggatggaaaatttctaaaaggagtattcaaaggttgggggttgtattcatctgtttagtgtt<br>gccataaaagaataccagaagctgagtaatttataaagaaaagaagtttatgtagctcacggttttgtaggctgagaagttcaacggcatggccctggct<br>tctggcaaaagctgttgtgttccatcacaacacggcaatgaaggggaagtggacaagtaggaagacagagaaacctgaggggtgtcctggcattataaca<br>cccaccctttggggaaataatccattccttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	downstream:NEK11:NM:024800	
0	chr12	34017339	34017340	2000587	0	-	AC209011	NA	NA	LINE	L1	L1HS	ggagaggtagctgaattatttgatgtggagaaaccaacacaaagagtcaaggaaaatgaagagatgatgaaatattttctaaataaaaggacaaaataaa<br>aatccagaaccttacactgatgaaatggatatatgcgatttacctaagagaattcaaaataatgggataaagatgtgtatggaagtcaggacagcaatgt<br>atgaataaagtgagaatttcaacaaagggataggaaatgtttttaaaatgtcaaccccacaaatcaaggggctgcagaatacaataaccagactgaaaaa<br>ttcaatagagagtctcaacaggagtttagatcaagcataggaaaaaattagcaaacttgaagacaagtcattaagatcatttaatt<font color="green"><u>AAAGAAGCAAAAAG<br></u></font><font color="red">GATTTCTTGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATC<br>TGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCT<br>CACCTGGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCATAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCAGGTCACTCCCACCCGAATATTGC<br>GCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACA<br>GCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGA<br>ACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTC<br>TGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCA<br>AGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCT<br>GCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGT<br>AGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCA<br>GCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCA<br>AAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAAC<br>CAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATG<br>AAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTACGTGAAAAGACCAAATCTACGTCTGATTG<br>GTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGT<br>TCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAA<br>AAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTTGGCAGAAACCCTACAAGCCAGAA<br>GAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAA<br>ATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCAG<br>TACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGA<br>CAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGA<br>CCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAA<br>CAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGG<br>GATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGA<br>CTTAGACTCCCACACATTAATAATGGGAGAGTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTG<br>AACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATT<br>CCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTCTCTCTCAGACCACAGTGCAATCAAACT<br>AGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCA<br>GAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCAC<br>TAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAG<br>CAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAA<br>AGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAAAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCA<br>CCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACACAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACAC<br>ATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAA<br>AAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAG<br>AGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTT<br>GATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCACT<br>GGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAG<br>AAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGA<br>CAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTC<br>AACATACTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTGTTCAG<br>ACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGT<br>ACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATAC<br>CTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACA<br>TTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGAC<br>TTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGA<br>GGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAA<br>CAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATG<br>GTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAAC<br>GTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAA<br>TGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAC<br>ATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCC<br>ATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCA<br>GAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGG<br>AGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCGTTGTGGAAGTCAGTGTGGTTATTCCTCAGGGATCTAGAACTAGAAATG<br>CCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAGGGACTATAAATCATGCTGCTATAAAGAGACATGCACACGTATGTTTATTGCGGCATTAT<br>TCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCAT<br>AAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATA<br>TTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGTGAGGGGGGAGG<br>GATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTG<br>CACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAGAATTATTTCTTGATGAGTTAAGATATTATTTCCGTTTTTCATTTTTATTATCTC<br>AAGTATGCAATGGAGTTTTTCAAGGAGTTATATGACAGGTGATATTGCAACTCATTGAATGCAGAAGACATAAGAATCCAGCTGTCTTCCACTTAGAGAT<br>TTTCTAAAATAAGATGTGACTCTCACTAAATGTTTTTATTTTGGAACGAATTCATAAAACTATGTCATTTTTGCTAACATGTAATGGGCTTACTATTGTT<br>ATTTTAATTAAATTGATAAATATATATTTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAGCAAAAAG</u></font>ataaaaggaaaaataactaaagatagcttaggaaacttacga<br>caccaaataaagtgagccaatatatgcattctgggagtccaaaaaaagaagagaaagagaaagagggtttattcaaagaaataatggctgaaaatttccc<br>aaacctgctgaaagaaatgaacatcagtttcaaaattcccaaaggacagaaaatagaatgaatgcaaagagatccacatcaaaaaatattataatcaaat<br>tatcaaaagttaaagacaaagaaaattttgagagcagcaagagaaaagtgacttgttatattcaagggaaactctatgaaactatcagcagacttttcgg<br>cagaaaccttccaggccaggaggaagtgggatgatatattcaaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	36570277	36570278	2000588	0	-	AC209560	NA	NA	LINE	L1	L1HS	atcgtattccacattagaacatcctgctaggttgtatggtacttccatgtccttacttgctgctttgggtggtggccatttaccttattcagaaccatga<br>gttcacctaaggcctactgaccaatagagcttctaggtctttcccatctccttgtcttcttaaatgctgaaatggccggggaaatgagacaaactggcct<br>aaagtgataaattgatttcatcattgtcctgttcctcagctatctaaaacctgtctaggtgatgcagatactgcatttgtcagtgtcagaactgtgcaaa<br>tgcaatatatccttgtaacaaacctgcacatgtaccccctgaatctaaaataaaagttgaaattat<font color="green"><u>AAAAAAAATAAAAATTTAAAAAAAGAACTGTGCA<br></u></font><font color="red">GAGAACTATTTCTTGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATT<br>TCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCA<br>TTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAA<br>TATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCT<br>AGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAA<br>GCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGT<br>AACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCC<br>TCCTCAAGTGGGTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAAC<br>AGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACC<br>AAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCC<br>TCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTC<br>AAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCT<br>GAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAAT<br>GAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTC<br>TGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGC<br>CAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATG<br>AAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAG<br>CCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAATAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGA<br>AATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAAC<br>AACCGGTACCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCA<br>TAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAG<br>TCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAAT<br>GGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGG<br>TAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACA<br>AAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAG<br>GAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACA<br>CCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAAT<br>CAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATG<br>AAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTA<br>TAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAA<br>AGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTT<br>TTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATA<br>TCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCT<br>CGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCA<br>ACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAG<br>AAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAAT<br>ATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGTTGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTC<br>ATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAG<br>ATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTAT<br>CTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTC<br>CTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGT<br>TTGCAGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAAT<br>CAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATA<br>AAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGA<br>AGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACC<br>AATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAA<br>GCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGA<br>ACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAA<br>TAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGAT<br>TTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAA<br>AAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACC<br>TACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAAC<br>AACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGG<br>CCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGG<br>ATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTA<br>GAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGG<br>CACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGC<br>AGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACAC<br>CGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGG<br>GGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCAC<br>AATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAA</font><font color="green"><u>AAAAAAAATAAAAATTTAAAAAAAGAACTGTGCA</u></font>aagatgtaaacatctttcttctt<br>gttacattctgaaagccaccaaaggagtaaagggagagttccttttggtttgtttctcattataaacttttttttttaagttcctaaaataaaattgtgg<br>gagtctaagcatatcatcagggaagcttatctgcaagtagagcagtaaaacactcattttaaaagtgccttaggaccaggcgcggtggctcacgcctgta<br>atcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactgagaataca<br>aaaaataagccgggcaaggtggcgagcgcctgtagtcccagct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr8	72399237	72399238	2000589	0	-	AC217513	NA	NA	LINE	L1	L1HS	gactggtttgggctcagatactaggagcatgttcacactgggagggcttctggagatcatctgcatgaacccctcattttacagatgaaactgagcctga<br>gaatgttaacccacagtaattaaattaaacttaatgtagaaagtgggatttatctgtttcttaaataatatgtgagctacatctgagatgcttttctggg<br>ttagtacccacttcaaatacttagtctcattgtccaaataatacatttgaatttctgagattgtttcctggtactcctctttgtttttgaacagaagaga<br>ttgggaaaatgtggttatcattgacaaactgcttattaggtatgtgatcttgattaaaccatttaggtccatgaaacccttgct<font color="green"><u>AGAAATTTAAGAGAGA<br></u></font><font color="red">GAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTACCGG<br>GTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGGGAAG<br>CGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTCAGAC<br>CGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCTGAGA<br>TCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGTGGAG<br>CCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGACTTAA<br>GTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGTCCCT<br>GACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGG<br>TCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACGGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAAACCA<br>CAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAGAACA<br>AAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAAAGAA<br>GTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAG<br>AACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAGAAGG<br>GAAGTTTAGAGAAAAAAGAATAAAAAGAACTGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACCTGAA<br>AGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATTCAGG<br>AAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAG<br>GGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGG<br>CCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTATAG<br>ACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGCCGCT<br>GCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAAT<br>TCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCAGTGT<br>GCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAAAGGC<br>AGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAGAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAA<br>CAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGACTCCC<br>ACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAGCTCT<br>GCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAATTGAC<br>CACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGA<br>TTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAAAGAT<br>GTTCTTTGAAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGCCTAC<br>AAGAGAAAGCAGGAAAAATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGGCAAG<br>AAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACAA<br>AATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACA<br>GAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCGAGAAGAAATGGATACATTCCTCGACACATACACTCTCC<br>CAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGG<br>ACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTC<br>CCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCTGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTG<br>ATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGG<br>CTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTT<br>GACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGATGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAG<br>CCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTT<br>GGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACATGATT<br>GTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCAC<br>AAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCA<br>ACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCATGCTCA<br>TGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAG<br>AATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACT<br>ACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCA<br>GAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAA<br>ACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAA<br>AACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAA<br>GACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAA<br>TTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTG<br>GGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAA<br>ATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA<br>CACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCATCCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCC<br>AGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCA<br>AAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATG<br>AGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCAT<br>AGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGG<br>GAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCC<br>TAAAACTTAGAGTATAATAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTTAAGAGAGA</u></font>ataatgagtcttaccttgttcctcactcttgaatttggaaccacctgagaagt<br>gacgcacaagtcacacaaatggagatgaaaatagcacttctgttaccaataaggcagacttagaaactgaggcaacctaccagagctgggatctctaata<br>ttcattctcttcctttgtttctttcagcatgaccctgagacaactccctggtgggagagtttgggtctgcagggcagacgtgctttcttagaacctcacc<br>cttgcatccactgggagcagaaagagaaagcaagctgaactcctgatctgcccctgctgtcaggtcttggctctgggccttgacctgctgcttacacaga<br>ggagggtgggaaccgaataggatccaggtct	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chrX	68696886	68696887	2000590	0	+	AC208589	NA	NA	LINE	L1	L1HS	aagaaagaaactaaaattaataatctaagcttccagctatgaaactagagaaagtagaatgatttaagcctaaagcaactagaaaaaagaaaaaattaaa<br>tcagaaatcaatgaaattgaaaacaggaaaacaatacagcaaatcagcaaaaccaaaaacttgttcacttgtttgtttgcttgtttaaaaaaaaggtaaa<br>taagatcaataaacctctagctagactgactgagggaagaaaaagaaggcaaaaaattccaatgtgaaaaatgaaagtgaagtcatcactgctgatccta<br>tggacattcaaaagataataaaggaataatatgaacatccctatgctcacaacttgacaacttatatgaaatggaacaatttctt<font color="green"><u>GAAAGACACAAACTA<br></u></font><font color="red">AGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAATAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCTGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCGGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAAGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGACAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAAAAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCTGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGAACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATGAAA<br>AAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCAGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTGTATACCCAAATGAGTATATATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGACACAAACTA</u></font>ttaaactggcacaaggagaaatagatcatttgaataggcc<br>tatatctagcagagaaattgaattaatcattcataacgttacaaaaaaaatagttacaggcccaaatagtttcactggtgaactctaccaaacatttaaa<br>gaagaaatgctacaaattatctacaatctcttccagaaaaaaagataaaaaatattccttaactcatactatgaggccagcattaccctaatatgaaaac<br>ctaataccactgccctaataccaaagataaagacattacaagaaaagtcaactacagaacaatgtctctcatgaatacaaatgcaaaaatcctctacaaa<br>atagtatcaaactgaatccacaatgtataaaaactatacacatga	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr9	5491419	5491420	2000591	0	+	AC207594	NA	NA	LINE	L1	L1HS	gggacatcacacactggggcctgtcgtggggtggggggaggggggaggggtagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagca<br>cacctacatggcacatgtatacatacgtaacaaacctgcacgttgtgcacatgcaccctggaacttaaagtataataataataattaattaattaattaa<br>attgcattcatatgaatggtacctattaaaattgcattgatatgcaattttaataagtaccattatatcagaatgtgtccagggatctacagaaaattat<br>gttcacaaaaatactgacagcaattatctctgtggttgagtatttgggtaatatttactgttattttttacttttttttggtatttaa<font color="green"><u>AAAACACTTAGC<br></u></font><font color="red">CGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGGCAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATG<br>TTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGT<br>GGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTT<br>TATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAG<br>CCGCTGCAAAATCATGCCAAAATGTAAAGACCATTGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGAT<br>CAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATC<br>AGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAA<br>AAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAA<br>TTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACTTAGA<br>CTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCA<br>GCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAA<br>TTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACT<br>CAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATA<br>AAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATG<br>CCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAG<br>GCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATC<br>AACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATC<br>CCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACAC<br>TCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGT<br>CCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAA<br>TCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAA<br>CATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGTTGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATG<br>CAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAG<br>CCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACC<br>CACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATA<br>GTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACA<br>TGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAA<br>ATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGA<br>ATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCAT<br>GCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTT<br>CACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATC<br>ACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGC<br>CCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTG<br>GGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAA<br>CCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAA<br>CAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGA<br>GAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAA<br>AAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAA<br>TGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAAT<br>AGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTT<br>GACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA<br>TAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAA<br>TGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCA<br>CTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGC<br>ATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATG<br>TACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACACT<br>TAGC</u></font>aatgatacaatgtgctatctgaaaaaaactaaactttttaaaatataaatttgaggggaaaatgaactaagttagtaatgttttgggaataagatc<br>atgggttggccacaccaagcaggtaatggcacaaggataagataattaacatttattaagcacttattacatgccagccggccctgttctaagcactttc<br>cgtgtatcaactcatttcatttgcacaactccacaaagcaagtcttttatggtgcccattttacagataatgaaatgaaacaggcaccaagagaggaagc<br>cgtttgtttgaagtcttacggctggcaggaggtgaaacagagatttagacagaggtctgcttccaaaatctctgagcgtgacccctgtgctc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr11	67599047	67599048	2000592	0	+	AC226138	NA	NA	LINE	L1	L1HS	tgcttatggaatccaggcaatgggcaaagagaaaaagaaaactatggaatcaaccagatgcagtggctcatgcttgtaatcttggcactttgggaggttg<br>aggcaggtggacttcttgagtccaggagttcaagaccagcctggcccacatagtgagaccccgtttctacaaaaaatacaaaaagttgctgagcatggtg<br>gcatgcacctgtagtcccagttacttgggaggctgaggtgggagaactacttcagcccaggaggttgaggctgcagtgagccatgattgtgccactatac<br>tccagcctgggtgacagagtgaggtcctgtctcaaaagaaaacaaaaaagataagaaaaagaaaactagggcatctggacagaataagtttatatatata<br><font color="green"><u>NNNNN</u></font><font color="red">ATATAATAAAGAACTGAGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGAT<br>TTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAG<br>GGCGAGGCATTGCCTCACCTGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTC<br>CCACCCGAATATTGCGCTTTTCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCG<br>CTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGC<br>AGCCGGGAAGCTCGAACTGGGTGGAGCCCACCACAGCTCAAGGAGTCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAA<br>GACAGCAGTAACCTCTGCAGACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGA<br>CAGACTGCCTCCTCAAGTGGGTCCCTGACTCCGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGT<br>ATTCCAACAGACCTGCAGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCAT<br>CAAAGACCAAAAGTAGATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAAC<br>GCAGTTCCTCACCAGCAACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGA<br>GGACATTCAAACCAAAGGCAAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTG<br>ATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATG<br>AAATGAATGAAATGAAGCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAA<br>TCTACGTCTGATTGGTGTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCA<br>AGGCAGGCCAACGTTCAGATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAG<br>TTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAAC<br>CCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGT<br>GAAGGAGAAATAAAATACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAAAGCTCCTGAAGGAAGCGCTAAACATGG<br>AAAGGAACAACCGGTACCAGCCGCTGCAAAATCATGCCAAAACGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGC<br>TAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGG<br>ATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACC<br>AAGCCAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTA<br>CATAATGGTAAAGGGATCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGT<br>GACCTACAAAGAGACTTAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGG<br>ATACCCAGGAATTGAACTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACC<br>ACACCACACCTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCAC<br>AGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATA<br>ACGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGG<br>GAAATTTATAGCACTAAATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACA<br>CATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAAACCCTTCAAAAAATCAATGAATCCAGG<br>AGCTGGTTTTTTGAAAGGATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATA<br>AAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGA<br>TACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAAT<br>AGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCC<br>AATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTT<br>TAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAA<br>GTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTA<br>TCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAAT<br>AAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTC<br>TCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAAT<br>TGTCCCTGTTTGCAGACGACATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGG<br>ATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCA<br>AAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAA<br>ACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCAT<br>CAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAA<br>AAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGGGATATAG<br>ATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTC<br>CCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGG<br>ATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCA<br>AAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAA<br>CAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAA<br>AAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCAT<br>CATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTG<br>CTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGAT<br>CTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGT<br>TTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGA<br>ATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAA<br>ACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTC<br>GGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACT<br>AACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>NNNNN</u></font>aaagaactgagatagaactgggtt<br>gactgaataattatttgaattgcttttgagtgaatttttcctattggagtctacctttgtttttgtgtgtgtgtgcgttttttgttttttggtttttttt<br>tggtttagttttgtctttgtttttttttcagactgggccttgctctgttgcccaggctgctggagtgcagtggcatgatctcagctcactgcaacctctg<br>cctcctgggttccagcaattcttctgcctcagcctccccagaagctgggactacagggcatgtaccaccaagcccagctaatttttgtatttttagtaga<br>gatggggtttcaccatgttggccaggcctgctcttgaactcctaggctcaagtgatccacctgcctcagcctccca	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	 TSD unavailable	NA	NA	NA	NA	intergenic	
0	chr2	144304980	144304981	2000593	0	-	AC214987	NA	NA	LINE	L1	L1HS	actttcctagtttcttcatctccttcattcatgttaagtaggatatcagacatttcaataagtagaagaaaatctcactgacttcttcaaatgttacaaa<br>aaaaaaaaaaagtcatccctcctcaatttggatacaggagtaaaaccactgtcttgcctcattattagaattttcccttatatttatacttagttcttgc<br>cacaatatctaaccaattttttttttataattggagatgcttatctatacctttggaatccggaagtataggcagtagtatactttcaaaaatattattt<br>cctggtttccatttgctgtgattctttatggatcaggcttgtttgtgtatatagcctctatacatctaatttaattcccacctt<font color="green"><u>TAAAATGATTCCTTTT<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGT<br>CCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACATGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCCGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATC<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGAGATTCCTCAGGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAAT<br>AGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAT<br>GATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCAC<br>TCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TAAAATGATTCCTTTT</u></font>aacttaaggattaccaaatg<br>gtaatcaaccagggaaaagacaaggggaaaaagttccagtgtggctaatgtgatatagattgataagccatttatgtaccttaatacctggttaacatga<br>aacaatagtggaacaatagtgtcctatttgtgtcttattttctgcacattcattcttacatatctctctaagctcagctaagaatttgaggcctaactgc<br>atgaagcctgtaggatagtagacataaatgtgacttacagatatatgccagccttaggatcatttggaaatctctgaagataagaaagatctcagcaaga<br>ttctgagtttgcttgagaaatttctctagaaaagaacctagcatcagtggtctgatcagaccaa	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:ARHGAP15:NM:018460:10/14	
0	chr16	33755034	33761079	2000594	0	-	AC221021	NA	NA	LINE	L1	L1HS	atgactctagaggaccacatgtgaaatgcaacaagcaggagcagaagacaagtaattcattatttcactgtagtgcattaaaatggtagactcacagaag<br>tagaatagaatgttggttaccaggggctggaggggtggactagaaaaggagagattttggtcaaagtgtaaaatgttccagttagacagaaggagtaagt<br>tgcagtgttctaatgcacaagatggaaaatatggctatgaatgcattgtatatttcaaaatggctaaaaatgtaaatgttaaaatttttcccactaagaa<br>attatacaggtcgggagtgggggctcacacctctaatcccagcactttcggaggccgaggtgggtggatcacaaggtcaggagttc<font color="green"><u>AAGACCAGACTGGC<br></u></font><font color="red">GGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGTA<br>CCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCTGG<br>GAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTTC<br>AGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTCT<br>GAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGGT<br>GGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGAC<br>TTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGGT<br>CCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTG<br>AGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAAA<br>ACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACAG<br>AACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCAA<br>AGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATATCCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCT<br>CGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGAG<br>AAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTACC<br>TGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGATT<br>CAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGT<br>TAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTG<br>GGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT<br>ATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCAGC<br>CGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGATC<br>AAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCATCA<br>GTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAAAA<br>AGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAAT<br>TCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAGAC<br>TCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTCAG<br>CTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAAAT<br>TGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAACTC<br>AGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAATAA<br>AGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAATGC<br>CTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAAGG<br>CAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGATCA<br>ACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGATCC<br>CACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACACT<br>CTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTC<br>CAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAAT<br>CCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAAC<br>ATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGC<br>AAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAATGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGC<br>CTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCC<br>ACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAG<br>TGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGACAT<br>GATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAA<br>TCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGGAA<br>TCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATG<br>CTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTC<br>ACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCA<br>CACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCC<br>CTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGG<br>GAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAAC<br>CTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAAC<br>AAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAG<br>AAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAA<br>AGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAAT<br>GCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATA<br>GGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTG<br>ACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAAT<br>AGCAAAGACTTGGAACCAACCGAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAT<br>GATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCAC<br>TCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCA<br>TTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGT<br>ACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACCAGACTGGC</u></font>caaaatggtgaaaccctgtctccactaaacacacaaaag<br>ttagccaggcgtggtgttgggcgcctgtaatcccagctactcgggaggctgaggcaggaaaattgtttgaacctgggaagcaaaggctgcagtgaccgag<br>atcgcaccactgcactccagcctcggcgacagagtgagactcagtctcaaaaaaaaaaaaaaaaaagaaattacacatttgtgaggtgatggatatttta<br>aatagcttgattaacaattccatgatgtatacatgtatcatagcatgtgtgaagcgacctacctgtatgaaggtgaggtgacctggtcacgtgacagtga<br>ggtgacctgggggatgtgtgaggtgacctgggggatgtgtaaggtta	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr8	85428621	85428622	2000595	0	+	AC219164	NA	NA	LINE	L1	L1HS	ctatttgcctggtttgtggtggtcgggggcagggtagggggcggtgtggggtggggctgagagtgggagaggtgggtggggatatagttaattcaaattg<br>gcaatatcaataagaactaaaaataatagtagacatctgggtttccagtcatacattttagatggttgtaaacacatttaatgaactcagcaataattaa<br>tatctaatatgttcaaaaccatgagctaaattatatcacagggttaaaatgtgtatgacatatacacatagtttataatatatttcatccatgcacttaa<br>taagaaaaataatatacctaatatgcataagtggagagatatacaccagaagtattttacttttttttgtataatatttccttaat<font color="green"><u>TAAAAGCCAAATCC<br></u></font><font color="red">CGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGAAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGG<br>GTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAAACAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGA<br>TTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACT<br>TTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCGCTAAACATGGAAAGGAACAACCGGTACCA<br>GCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGA<br>TCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCAT<br>CAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCAAATGGAAAACAAAA<br>AAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCA<br>ATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAG<br>ACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTC<br>AGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCACAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAA<br>ATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTACAAC<br>TCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAAT<br>AAAGATGTTCTTTGAAACCAACGAGAATAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAT<br>GCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAA<br>GGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAGGAT<br>CAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGAT<br>CCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACA<br>CTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAG<br>TCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGA<br>ATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGA<br>ACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGAT<br>GCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAA<br>GCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTTAAAATAATAAGAGCTATCTATGACAAAC<br>CCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACAT<br>AGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGAC<br>ATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAA<br>AATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGG<br>AATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATTCCA<br>TGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCT<br>TCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCAT<br>CACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAG<br>CCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCT<br>GGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAA<br>ACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCA<br>ACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGG<br>AGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAA<br>AAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAA<br>ATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAA<br>TAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATT<br>TGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACA<br>ATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA<br>ATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTC<br>ACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAG<br>CATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACAT<br>GTACCCTAAAACTTAGAGAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACATACAAAAAAAAAAAAAAATAAAAAAAAAAAA<br>AAA</font><font color="green"><u>TAAAAGCCAAATCC</u></font>atatatttaaatttcataaatgaaaccctagtctgaagaagctactttgtggctcgtttttagagctgtataatatatttaag<br>cactacagtttgaagcattttaaataataatatagtactgtaagaataatttatgtatgaagttcattttgaaactctttggtgacaactctattggacc<br>aaaattgatatcaacaaaccaagcaaagttgtatttttaatatgaagaaaggataaatgaacttaaatataagcaggagacttcacacctttctccactt<br>tgctggggtgaacatccctggttatcaagtctgcattaagatatcccaatgcaagagggtatctgtctctgttcagggtggatctctcttcagctgggga<br>ttc	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:RALYL:NM:001100392:2/10	
0	chr22	22715604	22715605	2000596	0	+	AC217064	NA	NA	LINE	L1	L1HS	gtttgtgtcatctatgatttctttcagcagtgttttgtagttttctttgtagagttctttaatctccttggttaggtatattcctaagtatttttttttt<br>ttgcagctatttgttaaaggggttgagttcttgatttgatattcagcttggtccctgttgttgtatttgtgtgccttaattttgtatcccgaaactttgc<br>tgaattcattcaccagttctcggagctttttgaatgagtctttaaagttttctaggtatacgatcttattataagcaaacaatgacagttttacttcctc<br>tttaccaatttggatgcccttaatttctttctcttgtctgattgctctggctaagacttccagaactatgttgaacagaagtggt<font color="green"><u>GAAAGTGGGCATTCT<br></u></font><font color="red">TGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCTGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGG<br>GTCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGC<br>TGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATA<br>AAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAAC<br>AGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGC<br>AAAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGG<br>CTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCG<br>AGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTA<br>CCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGA<br>TTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAAT<br>GTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAG<br>TGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATACT<br>TTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCA<br>GCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACAGGA<br>TCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACCCAT<br>CAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACAAAA<br>AAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCA<br>ATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACTTAG<br>ACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAACTC<br>AGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACCTTTTTTTCAGCACCACACCACACCTATTCCAAA<br>ATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAGAAC<br>TCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAAT<br>AAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAAAT<br>GCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCAGAA<br>GGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCGGGAGCTGGTTTTTTGAAAGGAT<br>CAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACCGAT<br>CCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACATACA<br>CTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAG<br>TCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGA<br>ATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGA<br>ACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGAT<br>GCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAA<br>GCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAAC<br>CCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACAT<br>AGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCGATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGACGAC<br>ATGATTGTATATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAA<br>AATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCGTAATTGCTTCAAAGAGAATAAAATACCTAGG<br>AATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCA<br>TGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCT<br>TCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCAT<br>CACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAG<br>CCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCT<br>GGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAA<br>ACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCA<br>ACAAAAGACAAAATTGACAAATGGGATCTAATTCAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGG<br>AGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAA<br>AAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAA<br>ATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAA<br>TAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATT<br>TGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACA<br>ATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATGAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA<br>ATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATTGCAAGAACAAAAAACCAAACACCGCATATTCTC<br>ACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAG<br>CATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACAT<br>GTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTGGGCATTCT</u></font>gtcttgttccggttctcggaagaaatgctttta<br>agttttttctgttcagtataatgttggctgtgggtttgtaatagagggctttcattaccataaggtatgtctcttctatgccagttttgcagagggtttt<br>aatcatgaagtgatgatggattttatcaagtactttttctgcatcgattgagataatctgtgatttttgttcttaattctgtttatgtggtatattacat<br>ttattgactttgtatgttaaaccatccctgcatccttggtaagaaacccacttcatcatggtggactatgatttgatagctgttggattgggttagcaag<br>tatttagtttaggatttttgcatctatgttcatcagggatataggtctgtag	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intergenic	
0	chr2	167844962	167851208	2000597	0	+	AC216097	NA	NA	LINE	L1	L1HS	tgacaaataggacatttgcataatctcaaagtatcttcccacagatatgccttaatttcaaagaagaaaacccaactttgcatgagcagtaataagacat<br>gtggatatcaagcaccccctactctaatgcacttgaaagcatctaacattacctctgttgtattattgccaaatacctgtaaactcaatgtattaagaag<br>aaaaccgcagacaaacccaagctaagggacattctactaactgcctgccagtattctttagaagtatcaaggcctgaaacacgataaaagactgaggaac<br>tttcagattagtcgagacacaggaggcatgacagctgagtgcaatgtggaattctgaatttgatcctgggccagaaaaaaaaattaatggg<font color="green"><u>AAAACTTTA<br></u></font><font color="red">AGTTGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACAGGTGATTTCTGCATTTCCATCTGAGG<br>TACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCACCT<br>GGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGACGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTT<br>TCAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCAGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGT<br>CTGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCGGGGAAGCTCGAACTGG<br>GTGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAG<br>ACTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACTGCCTCCTCAAGTGGGTCC<br>CTGACCCCTGACCCCTAACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGGGGCACACTGACACCTCACACTGCAGGGTATTCCAACAGACCTGC<br>AGCTGAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAG<br>ATAAAACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGC<br>AACAGAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACAGGAGGACATTCAAACCAAA<br>GGCAAAGAAGTTGAAAACTTTGAAACAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCA<br>AGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAA<br>GCGAGAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGT<br>GTACCTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTC<br>AGATTCAGGAAATACAGAGAACTCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAA<br>AATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGA<br>GAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAAT<br>ACTTTATAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCCCTAAACATGGAAAGGAACAACCGGTA<br>CCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACA<br>GGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACC<br>CATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACA<br>AAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGA<br>TCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACTCAGATTCATAAAGCAAGTCCTGAGTGACCTACAAAGAGACT<br>TAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAA<br>CTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCC<br>AAAATTGACCACATACTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAG<br>AACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGA<br>AATAAAGATGTTCTTTGAAACCAATGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTA<br>AATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACCCATTCAAAAGCTAGCA<br>GAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAG<br>GATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACC<br>GATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACAT<br>ACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAA<br>GAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAG<br>GGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGA<br>TGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGG<br>GATGCAAGGCTGGTTCAATATATGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAA<br>AAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACA<br>AACCCACAGCCAATATCATTCTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAA<br>CATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGAC<br>GACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTAC<br>AAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCT<br>AGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATT<br>CCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTT<br>TCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGG<br>CATCACACTACCTGACTTCAAACTATACTACATGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACA<br>GAGCTCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGT<br>GCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGT<br>TAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATG<br>GCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAAAAT<br>GGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT<br>CAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGA<br>GAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAG<br>AAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGGAATACC<br>ATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTC<br>ACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACAATGGAATACTATGCAGCCATAA<br>AAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATT<br>CTCACTCATAGGTGGGAATTGAACAATGAGATCACTTGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGA<br>TAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCA<br>CATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAATTTGAAGGCTTAATTTAATGTGTAGGTAAGGCTTCCAATAC<br>TGCATTTCAATAGCACTTCTGGATGTCTTCAAATTACAATATGGTAGGACAGCAATGATGTTAATGATATTTACGTTGAATCCATTCTTCAATTGCAGTG<br>TAATGTCAAAAATTAAAGCCTGGATTCCTCAGTCTATCAAAAAAAAAA</font><font color="green"><u>AAAACTTTA</u></font>aaaatttgagtaagatctaaaggtgagttaatagtattatgtc<br>agtgttaatttcctcatttcagtaactgtactatggttatgtaaatgatgatgtcattaggggaaactagtttaagggtttacaggaattgtgtactaca<br>tttacacatttttaatcctataaatattatacaataaaaagtaaaaatgagaaaaatgtgggctttgacttctttttttttttgaccgagtctccatctc<br>agctcactgcaacctccgcctcccgggttcaagtgattatcctgcctcagcctccctagaagctgggactacaggtgcgcaccacctcgcccagctaatt<br>tttgtatttttagtagagatcaggtttcaccatgttggccagggtggt	UCSC	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:XIRP2:NM:001079810:1/9	
0	chr9	72777423	72777424	2000598	0	-	AC212493	NA	NA	LINE	L1	L1HS	ttaggaggaggtctgtgtggaaacccacctacaaggttgtgttagtccaaggggtcagactgcccctaggcctgtcaaagttcataaaagttcctggtta<br>aagtacccacgagtccaggtgccatggctcatgcctgttcccaacactttgggaggccaaggcaggcagattgcagccagttcgagaccagcctgagcaa<br>catggcaaaaccccctctctactaaaagtataaaaaattagctgggcacggtggtgtacacctgtagttccagttactcaggaggttgaggtggaaggat<br>cacctcggcccgggaggttgaggctgcagtgaactgtgatcacatcactgcactccagcctgggtgacagagtgagatcctgtcttaa<font color="green"><u>AAAAACAAAACA<br></u></font><font color="red">GGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGTGATTTCTGCATTTCCATCTGAGGT<br>ACCGGGTTCATCTCTCTAGGGAGTGCCAGACAGTGGGCGCAGGCCAGTGTGTGTGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGCCTCGCCTG<br>GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGTCGCACCTGGAAAATCGGGTCACTCCCACCCGAATATTGCGCTTTT<br>CAGACCGGCTTAAGAAACGGCGCACCACGAGACTATATCCCACACCTGGCTCGGAGGGTCCTACGCCCACGGAATCTCGCTGATTGCTAGCACAGCAGTC<br>TGAGATCAAACTGCAAGGCGGCAACGAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCGGGAAGCTCGAACTGGG<br>TGGAGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAACCTCTGCAGA<br>CTTAAGTGTCCCTGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGAGATCTGAGAACGGGCAGACAGACTGCCTCCTCAAGTGGG<br>TCCCTGACTCCTGACCCCCGAGCAGCCTAACTGGGAGGCACCCCCCAGCAGAGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCT<br>GAGGGTCCTGTCTGTTAGAAGGAAAACTAACAACCAGAAAGGACATCTACACCGAAAACCCATCTGTACATCACCATCATCAAAGACCAAAAGTAGATAA<br>AACCACAAAGATGGGGAAAAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACA<br>GAACAAAGCTGGATGGAGAATGATTTTGACGAGCTGAGAGAAGAAGGCTTCAGACGATCAAATTACTCTGAGCTACGGGAGGACATTCAAACCAAAGGCA<br>AAGAAGTTGAAAACTTTGAAAAAAATTTAGAAGAATGTATAACTAGAATAACCAATACAGAGAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGC<br>TCGAGAACTACGTGAAGAATGCAGAAGCCTCAGGAGCCGATGCGATCAACTGGAAGAAAGGGTATCAGCAATGGAAGATGAAATGAATGAAATGAAGCGA<br>GAAGGGAAGTTTAGAGAAAAAAGAATAAAAAGAAATGAGCAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTAC<br>CTGAAAGTGATGTGGAGAATGGAACCAAGTTGGAAAACACTCTGCAGGATATTATCCAGGAGAACTTCCCCAATCTAGCAAGGCAGGCCAACGTTCAGAT<br>TCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGTCAGATTCACCAAAGTTGAAATGAAGGAAAA<br>AATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCTCAAAGGAAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACTCTACAAGCCAGAAGA<br>GAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCACAAGTGAAGGAGAAATAAAAT<br>ACTTTATAGACAAGCAAATGTTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTA<br>CCAGCCGCTGCAAAATCATGCCAAAATGTAAAGACCATCGAGACTAGGAAGAAACTGCATCAACTAATGAGCAAAATCACCAGCTAACATCATAATGACA<br>GGATCAAATTCACACATAACAATATTAACTTTAAATATAAATGGACTAAATTCTGCAATTAAAAGACACAGACTGGCAAGTTGGATAAAGAGTCAAGACC<br>CATCAGTGTGCTGTATTCAGGAAACCCATCTCACGTGCAGAGACACACATAGGCTCAAAATAAAAGGATGGAGGAAGATCTACCAAGCCAATGGAAAACA<br>AAAAAAGGCAGGGGTTGCAATCCTAGTCTCTGATAAAACAGACTTTAAACCAACAAAGATCAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGA<br>TCAATTCAACAAGAGGAGCTAACTATCCTAAATATTTATGCACCCAATACAGGAGCACCCAGATTCATAAAGCAAGTCCTCAGTGACCTACAAAGAGACT<br>TAGACTCCCACACATTAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAATTGAA<br>CTCAGCTCTGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTTTTTTCAGCACCACACCACACCTATTCC<br>AAAATTGACCACATAGTTGGAAGTAAAGCTCTCCTCAGCAAATGTAAAAGAACAGAAATTATAACAAACTATCTCTCAGACCACAGTGCAATCAAACTAG<br>AACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAACTACATGGAAACTGAACAACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGA<br>AATAAAGATGTTCTTTGAAACCAACGAGAACAAAGACACCACATACCAGAATCTCTGGGACGCATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTA<br>AATGCCTACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAGCAAACACATTCAAAAGCTAGCA<br>GAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTGAAAG<br>GATCAACAAAATTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGATAAAGGGGATATCACCACC<br>GATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACTTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATACATTCCTCGACACAT<br>ACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAGCCAAAAA<br>GAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACATGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAG<br>GGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGA<br>TGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGG<br>GATGCAAGGCTGGTTCAATATACGCAAATCAATAAATGTAATCCAGCATATAAACAGAGCCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAA<br>AAAGCCTTTGACAAGATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACA<br>AACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACCGGCGCAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAA<br>CATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGAC<br>AACATGATTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTAC<br>AAAAATCACAAGCATTCTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCT<br>AGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGAGACAAACAAATGGAAGAACATT<br>CCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTT<br>TCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGG<br>CATCACACTACCTGACTTCAAACTATACTGCAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACA<br>GAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGT<br>GCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGT<br>TAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATG<br>GCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACAT<br>GGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCAT<br>CAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGA<br>GAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAG<br>AAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACC<br>ATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTC<br>ACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAA<br>AAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATT<br>CTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGA<br>TAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCA<br>CATGTACCCTAAAACTTAGAGTATAATAAAATAAAAAAAAAAAAAAAAAAAAAGAGCCATGACA</font><font color="green"><u>AAAAACAAAACA</u></font>aaacaaaagtacccaggaaagaaa<br>aagtagagaatcaggtatgtcaggaattcatgttctcaaaccaaatcaagataggttttaaaataatcagggttattgcttttcactttataggatgtta<br>tagtttaacaactaccaaatataatgaatagaattttgccaggaaatggaggaaataaattttgttgggtgctgtgaagtcaaatcaaatcaaatctttg<br>ttatatagttcaaaaggactgtttgtgttaaagaactaaacactggctgtattaaatattttttcactgccttttagagtagattccatgacctgcttga<br>tagacatggtagactaggttgttgggttaatccaccatctactttaccaattgaatggccccat	OTHER	<UL><LI>Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R,Wilson RK, Eichler EE. A human genome structural variation sequencing resource reveals insights intomutational mechanisms. Cell. 2010 Nov 24;143(5):837-47.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21111241">PMID:21111241</a>.</LI></UL>	E: fosmid-end sequencing	NA	NA	NA	NA	NA	intron:MAMDC2:NM:153267:9/14	
0	chr11	20569191	20571178	3000001	0	+	PRMT3; RIP_SVA_chr11_020_01	NA	NA	OTHER	SVA	SVA_E	ttgtttattcctcacagtctctctgatcctggcctaaaagaactgggccacaatctgatgatcaaaacaactggtgcaggacaattgctttgatttgctg<br>ttggcttcaaatctggattaatggttgcctttctaattaagcctctgagcacaggatttaaaaactcacaggtgtcaggtccttaaaatggaccagcccc<br>tcctactctgtctcaaggctccttttctattacataaaaaatattttttaatatcctttttactatcctgaaattgaattcataaataatataagccact<br>tatgcacatgattttaaaaatcattataatgttcttagtacattatataggagacataagaagaatctattacaaaatacatatttt<font color="green"><u>AATACAGAAATGT<br></u></font><font color="red">CTCTGTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCTCTCTCCCTCTCCCTCTCCCTCTCCCTCCCTCTCTCCCTCTCCCTCT<br>CCCTCCCTCTCTCCCTCTCCCTCCCTCTCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCC<br>CTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGTCGCCAGGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGT<br>TTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCAC<br>TCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTAAAACCACCTCCCACCCGCCTGCCTTGGCCCCCCCAAAGTGCCGAGA<br>TTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGC<br>CCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAG<br>CGTCTCTGCCCGGCAGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTG<br>TCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTAGCAACCGCCCCGTCTGGGAAGTGAGGAGCCCCTCC<br>GCCTGGCAGCCACCCCGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAACCCCCGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCC<br>ATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGA<br>CAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTA<br>ATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTGTTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAATTAAAAAAAAAAA</font><font color="green"><u>AATACAGAAATG<br>T</u></font>ttgattacatcctaactagagacataatgaagtactcagaagtctacacctacacatagaatcatggatatacttacacatagaaccacatgctacacc<br>tatgcgtagaatcatggatatacctacacatagaaccacgtgctatacctatgtgtagaatcatggatatacctacacatagaaccacatgctacaccta<br>tgcatagaatcatggatatacttacacatagaaccacatgctatacctatgtgtagaatcatggatatacctacacatagaaccacgtgctatacctgtg<br>cataaaatgatggatatacttacacatagaaccacatgctacacctatgcatagaatcatggatatacttacatatagaaccacatac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	70594865	70597577	3000002	0	+	CNOT2; RIP_SVA_chr12_068_01	NA	NA	OTHER	SVA	SVA_E	aatatatacacatataatatatacttgcctaatttaatcaatatcctaaaaataaacgtttatctgtcctacatatgtaacatagtttatgtaataattt<br>tcctgttcttagacatttaaattatttcaaaattttaattataagaaacagtgagcaaaacatgatgatataagaaattttattatcatctctacttatt<br>tccataaaaaatcctgtaaatgcaactattgggtaacagaatataaatatttcaagacttctcatagtttactaaaattacactcaaacagtagaaatag<br>taaatatgtgggtaagtatataaataacaaatatatgtatatgtttctttccttattgaaaacacatatgactgtttaaagc<font color="green"><u>AAAAAAGTATGACACTTC<br></u></font><font color="red">GCTCTCCTTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCA<br>AGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGC<br>CACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTC<br>GGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAAC<br>CACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCC<br>ACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGA<br>GCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCT<br>GTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTC<br>TGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTC<br>CGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGA<br>GCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGA<br>GGGAGGTGGGGGGGTCAGCCCCCCGCCGGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGG<br>AGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCT<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCT<br>ACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCGGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGA<br>GGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGG<br>GCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAG<br>ACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAA<br>CATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAGGATGTGCTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCA<br>CCACTCCCTAGTCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACTTTTGTTCACTTGTT<br>TATCTGCTGGCCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATAAATT<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTATGACACTTC</u></font>actaatattaatgggtttataacaaatgtagatgtaatatatatgacaataatagcactaaggagaagg<br>ggtaaatggaatttgctcttgtgagttttctatatttcatctggactaattcaatataactaggtagactgggattagctaaggatccactttgtaaaca<br>ctagaaaaagtaaaaaataatgaaaaatgtagctacaaagtcaacagagaaattaaaatggaatatgaaaaaatatttgattaacataaaaggaagaaaa<br>tgaggaacaaaaaaccaaaaaaatttggtaagacaaatagataataaacagcaaaatggcagagctttaaatacaatcatatcaataagtatatcaaatg<br>caaataaactaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	43539810	43541447	3000003	0	+	EPSTI1; RIP_SVA_chr13_042_01	NA	NA	OTHER	SVA	SVA_F	aaaactcatctcaaagtttaatacattctagaattttcttttctacccccaagtccctcccacacacacatacctgactaaccctagataatgcatataa<br>caggaagtcaaaatgagaatcctgctcattttctgctaaggcttcaagacaacagatgccgagcgcttcaaattccaaagggaggtaatggcccctcaaa<br>gcaggatctgcaaggaggtaactgaaacctaccttggggaaccttaactaacttcagcctataaaagaggttggttaggtcaaagggaggcagaaatctg<br>aggaaagatgtcattctgaattctatgtcttctgtgttttgaggaaggagaaatcttcacaccagatgagcaggagaagtttaat<font color="green"><u>GAAAATCAGCTGGAG<br></u></font><font color="red">TCCCTGTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCGTCTCCCTCTCCCTCGTCTCCCTCTCCCTCTCCCTCCTCT<br>CCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTC<br>GGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCGAATGCCTGCAATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGAC<br>GGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCG<br>TTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTACGCCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGT<br>GCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCC<br>TGGCTGCCCAGTCTGGAAAGTGAGGAGCATCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATTTAGGAAG<br>TGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAAATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGA<br>GACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAG<br>CCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTAAGGAGCGTCTCCGCCCGGCAGCCAC<br>CCCGGCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCCGCCCGGCCACCACCCCGTCTGGGA<br>GGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATG<br>GTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGAATCCTGTTGATCTGTGA<br>CCTTACCCCCAACCCTGTGCTCCCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTT<br>GAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAA<br>CCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATC<br>AATAAAAAAATAAATTAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATCAGCTGGAG</u></font>acctcaacctgcatttttaagagtctgagggtcttattggattcatg<br>cctagaacagttagagcctaaaggtataaggctgttgtccattggccactgagatgagtcctcaagaagaggtagctacattacaaatggcccacattca<br>cagtttatgaaaagaaagaatgcacaagtatttcctgtacttttaatgtgattctcatgaaagagaatgccaacctaaagccatctaaagggacttgcct<br>atgagggccatgtcaagaacaatggaaccctaaaaggagtctaccaagagccaacagtgaggccaagccctgccgacaggagaggaaatcgtctgtatca<br>gggaaatccaggtgggagatgggtagcagagagtgggg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:EPSTI1:NM:001002264:3/13	
0	chr13	49951415	49953856	3000004	0	+	FLJ12577; RIP_SVA_chr13_048_01	NA	NA	OTHER	SVA	SVA_F	aaaagttgaatagtagatagatagatagatagatagatagatattaaaattgaaaagcaccactgacatccttttacagctggcttacctcaaagtctat<br>cagctgcaggtcagctatcagtgtcactagcaggccactgctgtagagttcttgtgctagctgagccactgcttctgttgggggttctttctcgtttgta<br>ccacacagaatttctttcattgcttgcagtgatttagacacttcttctgaagcctagtgaccaaaacgtatgctaacggttaaaagaataaaaatgttta<br>ggccataaacaaacaaacaaataatccaaaaaaccacttcttggtcttgggctctgtttatttataatgaatggcacagtt<font color="green"><u>ACAAACAAACAAAAACAGT<br></u></font><font color="red">GAGGGGAATCACCATGTTTGGGTGGACCTAGTTTCTAATGGCTTGCATTTACATATCAAAGGTTGCCAGCCTGGCTCTAAGAGCCGGGGCTATACAAGAA<br>ACTTTTTCGGCTCTCCCTCTCCCTCTCCCTCTCCCTCTGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCCAGTGCCTGCCATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGA<br>GACGGGGTTTCGCTGTGTTGGCCGGGCAGGTCTCCAGCCCCTAACCGCGAGTGATCCCGCCAACCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGT<br>CTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCA<br>AAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCG<br>CCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGA<br>GATGTGGGGAGCGCTTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGTGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCG<br>GCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCGTCTGAGAAGTG<br>AGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGACCGGCAGCCACCCCGTCAGGGAGGGAGGTGGGGGGGGGTCAACCCC<br>CCGCCCGGCCAGCCGCCCCATCTGGGAGGGAGGTGGGGGGTCAGCCCCCCCGACCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>ACCTGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCGGGAGGTGAGGGGTGCCTCTGCCCGGCCACC<br>CCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCC<br>TCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGAGAGGGAGGTGGGGGGGGT<br>CAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCA<br>CCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCAGGAAAGGTGGGGAAAAGATTG<br>AGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTG<br>TTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTA<br>AACAGATGCTTGAAGGCAGCGTGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCT<br>GCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACC<br>CAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>ACAAAAAAACAAAAACAGT</u></font>aagcactgccttttttattttggaaaatattataagtat<br>tataaaatttatttatataaaacagctctttggtatttctacttagtcaacatacactaaataatcttttttttttttttttagatggagtcttgctctg<br>ttgcccaggctggagtgcagtggcacaatcttggctcactgcaagctccgcctcccaggttcatgtcattctcctgcctcagcctcccaagtagcgggga<br>ctacaagcacccgccaccacgcccggctaatttttatacttttagtagagacagggtttcactgcgttaaccagatggtctcgatctcctgaacttgtga<br>ttcgcccacctcagcctcccaaagtgctgggattacaggcgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CAB39L:NM:030925:2/9	
0	chr14	35507716	35509507	3000005	0	+	C14orf24; RIP_SVA_chr14_034_01	CAAAAACAACCATGTCAGTGAGAATC	CATCATTCCTACAACTCATGGCTC	OTHER	SVA	SVA_F	taaacaggtggcaacaaaaccaggaaatttgctggagctaaagccccataatatgcatattaatgtaacagtaaaattaatatgttagtattttagtgaa<br>tttaggaaatctaaacagcaaatcataatataaaataaatttgaatgaatttattttacaggtagctctggtacatatacacatacaagcaaatatttca<br>gtaaaaaatggaacaaagtattgaaaattaaaatgtgaaggaatttcaacttgatgcttatgtagagtaaaatattttagtatttgaatacagagagcag<br>ccagagaatttgaatgaggtctaacaaaaacaaccatgtcagtgagaatcatggttaaataacaatataattactgatcctcctc<font color="green"><u>AAGACTTACGAATAG<br></u></font><font color="red">AGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATT<br>GCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCC<br>AGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCG<br>TCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTC<br>TGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGC<br>CCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCGGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCACCTGGCCAGCCG<br>CCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTG<br>CCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCTAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTG<br>AGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGC<br>CTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGTCGGCCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGA<br>ATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGC<br>ACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAAT<br>GGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGA<br>CACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATG<br>ACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATTAAAAAATAAATTTAAAAAAAAAATACAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTA<br>CGAATAG</u></font>ttattgataaatgaatagctattggtaaagccaagtaaatgatcatattcaaaaccagaaggccatcatcacagctcaagtctacatgatttg<br>atctctttatcattgtcattctttggattcactagattagtcatcatcctcaaaattctgccccaagttctaattacgttccaaacatttaggggttaca<br>tgaagcttgaacctactaccttctttgcttttgagccatgagttgtaggaatgatgagtttacaccttacatgctggggattaatttaaactttacctct<br>aagtcagttgggtagcctttggcttatttttgtagctaattttgtagttaatggatgcactgtgaatcttgctatgatagttttcctccaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr14	65360397	65363540	3000006	0	-	SPTB;H14_E_66; RIP_SVA_chr14_064_01	CTACCAGTCTTGCCTTCAGCTT	AAAACTGTAGGATTGGCCAGAA	OTHER	SVA	SVA_E	gagggtgcatagctttcattacatacaggagtttgttacccagaaagagtaagaaccattcttatgaatcactacttctacagcaatgtttttactttgt<br>cctaactcattacttgcaaaggaattttttaaagtaccagtagttgtttcatagacaacagaaccagtcaaagaatcatttaggatagttcctgatgcta<br>cttccaaacctctaccttgtccccactttgctaccagtcttgccttcagcttaattgaagaacaaaataatgagatcacacacatgatgtacaaagacct<br>caccatctgccacatacatcttccttttcacgccttcttttggaggcctctgctattttcacaggagatttttatccagattcccactat<font color="green"><u>GAAAATTCTT<br></u></font><font color="red">GTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCA<br>TCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTT<br>TTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCTGGGATT<br>GCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTG<br>GCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCT<br>CTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTG<br>AGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCGGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGCGGGGGGGGGGGGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGC<br>CCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCC<br>CCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCC<br>CCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTC<br>CGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCC<br>GGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAAT<br>GGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTT<br>TCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCC<br>ACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCT<br>TAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCC<br>ACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAGAGC<br>ACGAAGTGAGAAGAAGCTGGCCTTGCCCTACTTGGATTATCAAAGGAAGTAACAACTCTGGACAAGGAGAGATTGCTCTGCCTGGTGATAGCAGAGGAGT<br>CTCAGAACCAGAGGAGGAGGTGGCACATGGCTTTATCCTGTGCACCTCTCCCTCACTTAACAACTTTCATTCTTCCTGAAAATGAAAGCCTGCCATATGC<br>TTGCTGAGCTGTGGACTTTTCACGAGCCCAAGTGAAAAGCTGTTAAATGAAAACATATCTTTTTTAAACATTTTTAGGGAATAAATTATGATGCTCTCCC<br>TTCCAACTCAAGACACTCAAATAATCCTCACAGATAGAAAAATGTATCCATTGAACAATGAGAATGAGTTTATGTAAGTAATAACAATCGGAGAGTAAAT<br>AAATGCAGTTTGCTCATCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTCTT</u></font>taatgaacccttctttctcatgccaacatttctggccaatcctaca<br>gttttagataagaatttattttaagaggaataaaatctcttataacagtgccaatttgaagtgctagatccattagcttttcctgataaactttagaaaa<br>agggaatgggaagtaaacttctggcttactattaaaaacctgcttcttggtcagttttctgcaaaagctgtctctccttcttcctctctctcatggatta<br>ttaataatttttctgtatctttctcctttctatcgtattccctttgggattcactcttccccagtgatttaatttagttaatgttctaattagtgcaact<br>tccacccaggagattccttgagctttcacatcagtgcttttcca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3375	225	NA	intergenic
0	chr17	18791154	18792163	3000007	0	-	PRPSAP2; RIP_SVA_chr17_018_01	GTTAAGCCAGCCAGCTACTGGG	GTTGCCTCCGGCATAATCACATGG	OTHER	SVA	SVA_F	taccatacaacaagcactaaataataactacttagcaaatgaacaaaaaatgattaatttgaataatttagtacagttgcctccggcataatcacatggc<br>tcagctgtatctacaggaaagcctaatttatccaacactctcaggaagtaaggcagtaaaatatatttccatttgggcactttcattatttttgctggca<br>gtctttctaaactttttcatgtatttccttgtctcatcaaacatcatcaaacattaccaaacccagccaagaaaagacagaaccaagaaaacagttaata<br>acaattaaaggacctaaaagaaaggactctaacaaaaacaagtctattgtctctacggaggttaaaatgggaaattatatacaac<font color="green"><u>AAGAAAGAACAAGTT<br></u></font><font color="red">GAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCC<br>CCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGACCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTC<br>ATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTA<br>GAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGT<br>GCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATACTTGAAGGCAGCATGCTCGTT<br>AAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCAC<br>TTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAAGAACAAGTT</u></font>attatgaaaaagaaccaaaaataaatctagggggaagaagttattatggtctaaagaaacccagtagctggctgg<br>cttaacagcagaataaacacaactttaagaacaaaccagggaagatcaagacaaggaatttccccagaatgctatatataagtatgcaaaaagtaaaata<br>agtttttaaaagttatagagactagatccaaaattttcaggacctaatagttcccaaaggaaaataataaaagaaatagaagggatgaaatacttaacag<br>attaaaaaaaattcccaaagatggccaggcacggtggctcatgcccataatcccagcactttgggaggccaaggtgggcagaacatctgagccaagacca<br>gcctggccag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:PRPSAP2:NM:002767:7/12
0	chr17	64265058	64266114	3000008	0	+	PRKCA; RIP_SVA_chr17_061_01	NA	NA	OTHER	SVA	SVA_F	gctgttaagaaaagctgaatcttgtctaaaaacagtcccatctataatattaagtctggccctagggtttgtgttaataaatggctatagtgtaaaacaa<br>cctgaaacttctgctttgccaattctattctagatgtggatgagtcagggttctgggttgcaagaaacagcgagtaattggcaaacgtgagcagaaaagg<br>aatgcactggaaggaaatcagggagctcatgtattcttcgagaaggctggagaatcaggcttggaaaaggcagagccaagggaggtgtgggagcaggaag<br>cccagcaaggggctgcacagacagcatgactctcccccttcttttttaatagcgtttttttatttgtgcagtaagccattggctt<font color="green"><u>AAAAAATGTTTTAAG<br></u></font><font color="red">TGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCG<br>CCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGA<br>GCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCGGCCCCCCGC<br>CAGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGGGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGATGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGAGAAGTGAGGAGCCCC<br>TCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGTCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAG<br>GTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTC<br>TGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCGGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCA<br>AGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAG<br>GCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCTCC<br>TCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGTTTTAAG</u></font>cattttaaagttacagtttagtagcatt<br>aagtacattcacattgttatgcaaatatcatcaacctctatctctggatttttttcattttcctaagctgaaactctgtatccattaaattctaactcct<br>aactcctcatttgccccttctcccggctgctggtaaccaccattctactttctgtctctatgaatttgactattctaagtactgatgcaagtacttagta<br>taagtactaagtactgatgtgatgtaagtacttagtatgagtactaagtactggtgtaagtacttagtataagtattaagtactggtataagtacttagt<br>ataagcattaagtactggtgtaagtacttagtataagtactaagtactggtgtaagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	29305608	29308414	3000009	0	-	RNF135; RIP_SVA_chr17_026_01	CAAACATCCACGAGCATCAAGACC	CTCTGATGCATTCTTCAGTATGTC	OTHER	SVA	SVA_E	tgcaagagtcacagctttactgggcttggggtgccccctaatgcagatacggcttagatcacaacgcccaagtcctttcaaattcctggaaagccttccc<br>aagaaggacaggtacaaacaagcccagactgtgaagactacaataaataactaactcttcaatgcccaggcactgacaaacatccacgagcatcaagacc<br>attcaggaaaacatgaccccaccaaactaactaaataagtcaccaagagccaattcaggagaaacagaaatatgtgacctttcagacagagaattcaaaa<br>tagctgatttaagaaaactcggagacattcaagataacagagaaggaattcagaattctatcaggtaaatttaacaaaatgatt<font color="green"><u>GAAATAATTAAAAATC<br></u></font><font color="red">GGTTAAGAGTCATCACCACGCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCTGAGCCAAAGCTGGACGGTACTGCTGCCATCTCG<br>GCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGTCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTT<br>TGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGA<br>TGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTC<br>CCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCTTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCC<br>CTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCACCATCCCATC<br>TAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCT<br>GGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCC<br>CCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGCTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGC<br>CAGCCGCCCCATCCGGGAGGTGAGGGGCTCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGA<br>GGTGGGGGAGTCAGCCCCCCGCCTGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT<br>GGGAGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCGGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGTCGGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGG<br>CGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCAGCTCATTGGGGATGGGCCA<br>TGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACAT<br>GGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTAGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATG<br>TGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAC<br>TCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGA<br>CCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAAAAATAAAAAATAAATA<br>AAAAAAA</font><font color="green"><u>GAAATAATTAAAAATC</u></font>aagcagaaattctggaatcgaagaatgcatctgacatactgaagaatgcatcagagtctctcaatagcaaaatcgat<br>caagtattagaaagaattagtgagcctgaattcagcctatttgaaaatacacagtaagaagagacaaaagaaaaaagagaatgaagcatgcctacaagat<br>ctagaaaatggcctcaaaggggcaaatctaagaattattggccttaagaggaggtagagaaagaaatagtggtagaaagtttattcaaagaaataatagc<br>atggaacttcccaaatctacagaaagacatcaatatctacatacaagaaggttataaaacaccaagcagatttaacccaaagaagactatgtgaaggcat<br>ttataat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:RNF135:NM:197939:1/4
0	chr19	53096023	53097608	3000010	0	-	ZNF137; RIP_SVA_chr19_057_01	NA	NA	OTHER	SVA	SVA_D	agatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccctgtctctattaaaaatacagaaatagccgggcttggtggcacatgcc<br>tgtaatcccagctgctaggcaggttgaagcaggagaatcgcttgaacctgggaggtgggggttgcagtgagccgagatcgcaccattgcactccagcctg<br>ggcaacaagagtgaaactctgtctcaaaacaaaaaacaaaaaacaaaaaaaacagaacaaaaggccaggtgcggtggctcatgcctataatcccaacacc<br>tggatggaggctgaggcaggcggattgcttgagaccaggagttcaagaccagcctggccaacatggtcatatcccatctctaat<font color="green"><u>AAAAATACAAAATTAG<br></u></font><font color="red">TCCCCTCTCCCTCTCCCTCTCCCCATGGTCTCCCTCTCCCTCTCTTTCCAGGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACGGTACTGCTGCCATCTT<br>GGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTGAGTGCCTGTGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTATTTTT<br>TTGGTGGAGACGGGGATTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGGGAGTGATCCGCCAGCCTCGGCCTCCCAAGGTGCCGGGATTGCAG<br>ACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGG<br>CCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCACCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGA<br>GCCCCTCTGCCTGGCTGTCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCTGCCACCCCGTC<br>TGGGATGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAGCCACCCCGTCTGATAAGTGAGAAGCCCCTCCGC<br>CCGGCAGCCGCCCCGTCTGAGAAGTGAGAAGCCCCTCCGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCTCCCGGCAGCCACCTCGTCCCG<br>GAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCACCCCATCTGGCAGGTGAGGGGCGCCTCTACCCAGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCTCCCTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCAGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCGCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCACCACCCTGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGC<br>GGTTTTGTAGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGTGGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCA<br>TTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTTATCGGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTATCCACT<br>CAGGGTTGAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAG<br>GTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACT<br>ATTGTCCTGTGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATGATCAATAAAAAAAATAAAAATAAAATAAAAATAAA</font><font color="green"><u>AAAAATACAAAATT<br>AG</u></font>ccaggtatggtgacatgcatctgtaatttcagttaggttgggaggctcaggtatgtgaattgcttgagcccagaaggtggaggttgcaatgagctgag<br>atcacgacactgcactccaacctgttcaacactctgtctcataaaaacaaaatgaaacaaaaaacacaaaaccacaagcgcagctggaaacacttgtcag<br>tcagtgtgatgctttctatctcatatcctgggccatggtgacaattccgctcagggcctccaggggcatctctgcctagagcaggatgatgttcaatctt<br>attagtcaaagtgttcttcatgaattttctggttttatgtaaaaccactccataagggagtctctaagaagctgtccatgacaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr19	53689178	53691951	3000011	0	-	AK09261; RIP_SVA_chr19_058_01	NA	NA	OTHER	SVA	SVA_E	tcttgtctattcacacacacacacacacacacacacacacacacacagaaaataaagcctttctttctcatctactctttcaactttaaaacaaaaaata<br>aggctgggcatggtggctcacgcctgcaatcccagcactttgggaggctgaggcaagcagatcacctgaggtgaggagttcgagaccagcctggccaaca<br>tgatgaaacgtcttctctactaaaaatacaaaaattagctggccgtggtgatgtgcacttttaatcccagttacttgggaggctgaggcaggagaatcgc<br>ttgaacccaggaggcagagcttgcagtgagctgagatcacaccactgcactccagcctgggtgacacagctagactccatctcaaaaaaaac<font color="green"><u>AAAAACCC<br></u></font><font color="red">GGTCAAAAATTTAATCTGGATTACCCAGCATCTCCTATAAGAAACAAAGGGGCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCC<br>CTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGC<br>CTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTTGGTGGAGACGGGGTTTC<br>GCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCA<br>GTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGC<br>AGCCTCTGCCCGGCCCCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAG<br>TCTGGAAAGTGAGGAGCGTCTCTGCCTGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTC<br>TCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTG<br>GGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCC<br>GGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGG<br>GGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGTTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCC<br>CCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAG<br>GGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCC<br>GCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAA<br>GGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCT<br>TCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTG<br>CAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGA<br>AGGCCGCAGGGACCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCC<br>CCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACCC</u></font>ttaactacttttccttct<br>gtagtaagttcccctcttctatgctctatttaagagaatagtacacaaaaacttctttgtgttccttttttttcttttctcactttctcttctgttttcc<br>tggctttaaggacataccattaacctttttaaactgtttgttttcaagtttttgatacctcgctgatcacgtcacgctttcctcttctggtgtctcttga<br>tttttctgttccctaaatgtggactatgcacggcttactccctgagcttcttggttcctgtccacacccaatgtgggtggcaagccacccaggtgctgag<br>gcaagagaccaaggacacgagctgtttcagtataataaaatataaaacaagaatagttataccagatatagatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ZNF665:NM:024733:1/4	
0	chr1	25158704	25161509	3000012	0	-	CLIC4-A;H1_E_43; RIP_SVA_chr1_024_01	AGCCATAGCCAATGATCAAGTT	TTCATCGTTTCCTGGAATTCTT	OTHER	SVA	SVA_E	gctgatttttgtatttttagtagagatggggttatgccatgttggtcaggctggtctcgaactcctggcttcaagcgatccacctgccttggcctcccca<br>agtgctgggattacaggcgtgagccaccgcacctgacccggtaatattttttacttaggaaaatatcaaacaaattagaatgtgttacctacctaagtga<br>taagtggcaaggtcaaagatctacccattttattattaaaggatcatgctagccatagccaatgatcaagttagcttatttcttagatgaaacataacca<br>gcagagggcactggaacccagtaaaataaagttgagacattagcagagctcaactacagaagtgacaagagaaacaagccactt<font color="green"><u>AAAAATAAAAAATCAA<br></u></font><font color="red">TATAAAACGTTACTGCTCGCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTC<br>TCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCC<br>TCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGC<br>CTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTC<br>TCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCT<br>GGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACC<br>CCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCT<br>CTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTC<br>TGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGC<br>CCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAA<br>GTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCT<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGGGGGTCGGCCAG<br>CCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGT<br>GGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCC<br>AGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCG<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAG<br>CCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGT<br>GGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAA<br>AAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGG<br>GATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGC<br>TTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCAGCAGG<br>GTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAG<br>AAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAATAAAAAATAAAAAAATAAAAAATAAAACGTTACTGCTCAAAAGAAAAAAAAAATAAAA<br>AATAAA</font><font color="green"><u>AAAAATAAAAAATCAA</u></font>aaacataaaataataaacataaatttttattaattatattcaggccagcaataatgcatatagttagctgaaatgtaa<br>agtttataaattaacaggagaatacaatgtgagaaacagctaggtcagtaagaattccaggaaacgatgaaacactttctatgggtatatttaagaggaa<br>aaaagagaaaaggagagagcagaatctcaaggttgtaaaacaagagttaatatgcttcttattaaaggcagtgaatgcatggccgggcatggtgcttcac<br>acctgtcatctcagtactttggcaagccaaggcaggtagatcacctgaggtcagcagttcaagaccagcctggccaacatgatgagacctcgtatctact<br>aaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3121	301	NA	intron:CLIC4:NM:013943:4/6
0	chr1	113611340	113613777	3000013	0	+	LRIG2;H1_F_163; RIP_SVA_chr1_113_01	TTGTAAGGGATTGGGGTTTATG	TCTAACCTGTATCCTCCGCAGT	OTHER	SVA	SVA_F	agtctagtgattagatgtgacaggaaagaatggggggaaagcacaggcaatcctgagacttctagtttgaaagaatagaattgatcaggttagttagcta<br>tgactttgcaaagagtaaagtcccgaggtaaggagatatagggcagctaaattgtaagggattggggtttatgttaaggtgtggaacaagggatatcaag<br>tgagtagtttttttttttttaagtaatctggagctggggtattctgtgcttatggattccactgaactctaaaatctcagcccaggtactttagcaccca<br>cgaattaattagacaatttagggcaatgaatataaaagctctatattccattgttaatcagaaatgaatcattaaattctgtt<font color="green"><u>AAAAACACATATTTGCG<br></u></font><font color="red">CTAGAAAAAGTAAATTATGGGAGTCGGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGC<br>AGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCG<br>TCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCT<br>TCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGA<br>TGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGC<br>AACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCACCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGT<br>GAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAAGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGG<br>GTCAGCCCCCACGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCTCCTCAGCCCAGCCAGCC<br>AACCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCG<br>CCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCAGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAG<br>TGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCATGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCA<br>GCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACC<br>CCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAG<br>AAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTT<br>GATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAA<br>CAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCA<br>AGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAA</font><font color="green"><u>AAAAACACATATTTGCG</u></font>gctgggtgtggtggctcatgcttgaaatcccagcactctgggagg<br>ccgaggcgggcggatcacctaaggttgggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaactacaaaattagctgggcgtgg<br>tggcgcatgactgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaatccaggaggcggaggttgcggtgagccgagattgtgccattgc<br>actccagcctgggcaacaataatgaaattttgtctcaaaaaaaaaacaaaaaaaacaaaaaaaacaaaaaaaacgtgtatttgtggccagtcacagtggc<br>tcatgcctgtaatcccagcactttgagagcccgaggtg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3290	956	NA	intergenic
0	chr1	212471154	212472616	3000014	0	-	PPP2R5A;H1_E_271; RIP_SVA_chr1_208_01	GTTCATTCACTGGAAGCACAA	GGGCAAGTAAGCCAGTATTGAA	OTHER	SVA	SVA_E	ttgaggagatgacatctaactctcatttcagcttgtctggaagttttagtggaagaataaaatcagtcaagtggtagattagcccaattgacttttatat<br>cccagtctctgttatcctgacctaacttttttcctctatcaaattgagaaaaaatgatcagaaagatagtactatgctaatgtggaagagtattttaaaa<br>agttttcaaaaactttgtgtaaaaggggaccagaatatacccaacatttccaaaagaagcaaaaacaagtagattctaatcagttcttgataatctacaa<br>tttcttcaagctaattacagatcattataactttgaggggtgactccaaaatctaactgtgacacaaatgtgctgaatgatt<font color="green"><u>AACAATTCACTTCATCTT<br></u></font><font color="red">AGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCAGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGCGGGGGGGGGGGGTGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCC<br>CCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGC<br>CCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGCGAG<br>GAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGC<br>GGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAA<br>ATTCTTCTGCCTTGGGATCCTGTTGATCTGTGGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAGATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACGC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCA<br>AATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAAGAAAAAAAAAAAAA</font><font color="green"><u>AACAATTCACTTCATCTT</u></font>gtttctcagtactcattca<br>taaaacaaatgctctcatatttttttgagaaaaactttaggttacctaaaaatgagaggacagtgtttcaaagaagatcaatgaagcatttttatatcag<br>aagaatttaagaaacaaagatcccttgctttaacaggtcttagaaaaatctacgttcaatactggcttacttgcccagcacctatagcctaagactatac<br>tacagtctaaaggtctaaagactacaggctctaggcttagtcttagtctttagttagattaaagactatagtctaaagacttactcattcagcttctaca<br>atttccactcacttttcaccttatgcaaatctcatttcaagttatcaaaaagaaacgtattgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	2115	709	NA	intron:PPP2R5A:NM:006243:1/13
0	chr20	42676141	42676531	3000015	0	+	C20orf100; RIP_SVA_chr20_042_01	NA	NA	OTHER	SVA	SVA_F	aaatacttatatgatgtagctaaaattctccctgggagaaaaatcatagttacagtgcagagtttctcaacctcagcactattgacattttgggatgcat<br>aattctttgtttagtggggacatccctggccactacccagcagatgccagtagcttcccaccctccagttgtcagaaccaaaaatgtcttcagagaaatg<br>ccccctgcatggtaaaattgctcatctcaactcctgccctagatgtttctgttactaaaaaagaaaatgtgaaaatagcttaatttgaaaacctatgtaa<br>aaaacaacatatgctacctcaagtcaacattaatagagaagaaagcagaatttaatgaattatcatgaaagttgtcaaatttttttaacatctgcac<font color="green"><u>TAA<br></u></font><font color="red">GAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATT<br>AAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAA<br>ACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCT<br>GCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATA</font><font color="green"><u>TAA</u></font>gagctg<br>gttctttggctagacagttgaaatatataaacttttggccgggtgtggtggctcatgcctgtaatctcagcattttgggaggctgagacgggtggatcac<br>ttgaggtcaggagtttgagaccagcttggccaacatggcaaaaacccatctctcctaaaaatacaaaaagtagccgggtgtggtgacatgcacctgtaat<br>tccagctactcaggaggctgaggcagaaaaattgcttgaaccctggaggtggaggcagaggttgtggtgagccgagatagcatcactgcactccagtgtg<br>ggcaacagagcaagactccgtcacaaaaaaataaataaaataaattttgagaaggaaaattttaaaaagcaacgtgtattcacaatattac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TOX2:NM:001098796:3/9	
0	chr20	2803163	2806409	3000016	0	+	CPX-1; RIP_SVA_chr20_002_01	GGTGAAGATTCAGGTCAGGGTAG	GATGTGGTCTCTTGGTTTAGAGAGG	OTHER	SVA	SVA_E	taagatgtcttagggcagtaggcagagcctgggggcggggattcctggaaagatagggctttccagggagaactggagtgtgtgcagtctctccttcact<br>ccagcactgcatgtgccccggcaaagtgcacctccacccccaatcccccaaccccccagggcggagatttcaatgtggtaatgaggtgaagattcaggtc<br>agggtagcactgctgagctcccttctcatcttgtggcttgtttgtggttactggcttccagcctccattttttaaagcaagcacagctgtgaacactggt<br>taatttcacaggttttggggcttgctgaaagacttggggttactctgcagtgacaattccctaccttgaaaatattttccatctt<font color="green"><u>AAAAGAACTTGATTT<br></u></font><font color="red">GCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCT<br>CCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGT<br>CTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCC<br>CTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTC<br>CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCCACGGTCTCCCTCTGATGCCGAG<br>CCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGC<br>CGCCACACCTGACTGGTTTTCGGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGCTCTCCAGCTCCTAACCGCGAGTGATCTGCCAG<br>CCTCGGCATCCTGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAGTGGTGTCCAGGCTGGAGTGCAGTGGCGTGATCTCCGCTCGCTA<br>CAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTG<br>CTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAA<br>GCGAGGAGCGCCTCTTCCCGGCTGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCA<br>CCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCCGCCGCTCCGTCTGAGAAGTGAGGA<br>AACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCA<br>CCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCG<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAG<br>CCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGG<br>GGGGTCAGCCCCCCGCCCGGCCAGCCGCCTCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGGTCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGC<br>CGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAAACCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCA<br>GCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCC<br>GGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGA<br>AAAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTG<br>GGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAGATGGATTAAGGGCGGTGCAAGATGTG<br>CTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACGCTGCGGAAGGCCGCAG<br>GGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGA<br>GAAACACCCAAGAATGATCAATAAAAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAACTTGATTT</u></font>aacatctgttggttctgtcatattttccaggttgcgtc<br>ttcaaatgtcttgcccccaaaataccagtttttaaaattaatacgtgatattgtatccttgcaaaatatttgtaacatgtatgaaagttatgaacctctc<br>taaaccaagagaccacatcaatctaaaagacagatgttatcaggttagggcctcttcctgtgtgctcctcatcttactgtgcaagctgggattcctggac<br>aatggcaaattgaactgctcttcacagatatctttgacttgatattgatttaaaatgaactgcttgcttctaagtttccaccattaagaattatgtacat<br>tgttgtagatttctggtagttaacttttattcagttaaagaaattcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr22	27168077	27169792	3000017	0	-	AK026502; RIP_SVA_chr22_025_01	NA	NA	OTHER	SVA	SVA_F	aactatacttgcccaactgcgttgtcagtagagttccagttcagtttccccattgtgaagtactcatgtgagacctggaagacaggagagaataagaaag<br>cattattgttctactagcagcgggactttcgcagaaagcagacatatggtgttttccagcatcttctggacattttctcttaagtaacccacattggtgc<br>tgtaggcagctgaggacctcagtagtagtgctctgcaggaatccctgcacaccctgctatcctaaatgctgcagcattgcattccctgtattaaatctct<br>tcctgattgaaatacctagaggggtttctgttttccttatgcatcctgatgaatacagacagtcagaacacatggcttctaatttcattt<font color="green"><u>AGAGGTTAAG<br></u></font><font color="red">CCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGA<br>GGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCA<br>CCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGA<br>GCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCC<br>CCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCATGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCC<br>CCTGCCCGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGCCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGT<br>CTGGGAGGGAGATGGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCGT<br>CTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAAGGAGGTGGGGGGGGTC<br>AGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTG<br>CCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAGCAGCTCATTGAGAACGGGCCAGGATGACA<br>ATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACT<br>TTTCATTTTGTTCTGCACTAAGAAAGATTCTTCTGCCTTGGGATCCTATTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGT<br>CCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAAT<br>CTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCT<br>CCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAATAAATAAATAAATAAAATAAAATAAAATA<br>AAATAAAATAAAAAAA</font><font color="green"><u>AGAGGTTAAG</u></font>ggtgggctgggctggtaatgggtacccactgataaaagcaacaataatagcaactcttactttttttctgtatg<br>tgcaaggcactatgatgcgaggcaatttacccaacctgtctcatttatgagacgaccctgtttttgtttgtttgtttttgagatggagttgcccaggctg<br>gagtgcagttgcgcgatctcagctcactgcagcatccgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggataataggcgtct<br>gccaccatgcccggctaatcttttgtgtttttagtagagacagggtttcaccatgttggccagactggtcttgaactcctgacctcaggtgagccatcca<br>ccttggcctccaaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr22	24195950	24198505	3000018	0	+	SLC2A11; RIP_SVA_chr22_022_01	CCGTGTTAGCCAGGATGGTCTC	CTTGGGGTAGACGCAACTTGGTC	OTHER	SVA	SVA_E	aactgtcctagcgccatttattagcccgtcacttcccacttatttattattattattttttgagacggagtctctctgtcgcccagacgggagtgcagtg<br>gcacgaccttggctcactgcaagctccgcctcccgggttcacgccattctctcgcctcagcctcccgagtagctgggactacaggagcgtgccgccacgc<br>ccggctaattttttgtatttttaatagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcctgcctcggcctccc<br>aaagtgctgggattacaggcgtgagccaccgcacccggccacttcccacttatttcttaagggggaaaaggcaatggttgtttt<font color="green"><u>GAAAAAAAATTAACCT<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCC<br>GAGCCAAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCG<br>CACCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGC<br>CAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCG<br>CTGCAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTATGGGAAGTGAGGAGCGTCTCTG<br>CTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAA<br>GCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCG<br>CCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCTGCTCCGTCTGAGAAGTGAGGA<br>AACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCA<br>CCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCTGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGG<br>GGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGT<br>GGGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCAGCCAGCCG<br>CCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGG<br>GGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCC<br>ACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAA<br>ATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGAT<br>CCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTT<br>GTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGC<br>AGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGC<br>GAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATAAATTAAAAAAAAAAAA</font><font color="green"><u>GAAAAAAATTAACCT</u></font>tcaaaataaaatatcagcagttgaaacta<br>acaatgtattaataacaataatattatgaccaagttgcgtctaccccaagaattcaagaatggtttaccattagaaagtttattgatgtaactgatctca<br>ttaacagattaaaggagaatacccatatgatcatcttaatagatgcacgaaaagcatgcaataaaatacctatttattataactgctaatattttgtgtt<br>tttccttaaaaatgcagtgtttttaggaattaaagttcagagcagcaaaagtcaaacaaaaaccaagtctgagcaatagagctactacagtgcccatcac<br>agtgtctgctcaggtgacttcttaaggtcatgtccagctctatgtttctgtgacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	promoter:SLC2A11:NM:001024938
0	chr22	41140132	41142634	3000019	0	-	GPR24; RIP_SVA_chr22_039_01	GACAGGCTGGTCTCGAACTCCTG	GAATCTATGTCTTCTGGGTTGCAG	OTHER	SVA	SVA_E	atgtatcacacccagcgagtcatgagtatacttcagtcacacatacatacctgcacccaggcaattgtttaaaagcattttcttctttctttccttacct<br>gtagtttccagactagctgataaatgacctaaaatgttatcacaagttgcagaatgtgacccttacccattatcttcatgttcctagaatttgtgataca<br>aaaaaaaaaatgtatagccaatcaatagcttatgttattttaatgaaccagtgtaagaactaccccttcttttttcctttaaaaacccatgtatagctgc<br>tgctaattgaagcatatattcagggcaacttgaatctatgtcttctgggttgcagtcttcaaatttggcccaaacaaaccctactt<font color="green"><u>AAAACAAACAAACA<br></u></font><font color="red">CCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCT<br>CTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCC<br>TCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGG<br>CTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTT<br>GGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGAT<br>GGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCC<br>CAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCC<br>TCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCT<br>AGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTG<br>GGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGT<br>GAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTC<br>CAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCC<br>CCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCC<br>CTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCC<br>TGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGAACAGTCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGG<br>CGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTC<br>ATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCAC<br>TCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTA<br>AGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAATAAAAAATAAAAATAAAAAAAAA<br>AAA</font><font color="green"><u>AAAACAAACAAACA</u></font>aacaaaaaaaacggggctgggtgcagtggctcaggcctataatcctagcactttgggaggccgaggtgggtggatcgcctgag<br>gtcaggagttcgagaccagcctgtccaacatagccaaaccctgtctctactaaaactacaacattagctgggcgtggtggtggtgggtgcctgtaatctc<br>cagctcaggcaggagaatcgcttgaaccctgggggcggaggttgtggtgagcggagatcatggccattgcacttcagcctgggcgtaagagcaaaactct<br>gtctcaggaagaaaacaacaaccacaacaaaaaatgctacttatattaattttgcctctgtttgtttgtttgtttctctctctctctctttcttcttatt<br>att	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr2	170641519	170643951	3000020	0	-	SSB; RIP_SVA_chr2_170_01	NA	NA	OTHER	SVA	SVA_F	gtgacacaagtattttgagtttctgtctaaaaagaagttgaattgagaataaaccactataaatgtaatttgagcaggcatttttaaacattttaataag<br>atgtgaagaaattacagttcctagtttaagaactgaaaaaaacagataaaattaatagaatatgaagctaaagtcataaacatgaatgacaaaatcagtg<br>attattctgtattcaagaagcaaattataagagagaagttttcaaatcataccaatatcagtgattcattaagaataaataaatttcaaaaaagaaatga<br>ataagcttcttggatagtgtataatccaaataacaaagtggagcaattcataagaatatattggaaaaaattaaaattttttattattt<font color="green"><u>GAAAATAATGA<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCCCTCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCCACGGTCTC<br>CCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGA<br>TTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCC<br>AACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCAC<br>TACAACCTCCACCTCCCAGCCACCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTC<br>TGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCAGCCGCCCAGTCTGGGAAGTGAGCAGCGTCTCCGCCCGGCCGCCATCCCATCTAGG<br>AAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCC<br>CACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAG<br>GAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTTCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGC<br>CACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCATC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCATGCCCCCCGCCCGGCCAGCCGCCCGGTCCG<br>GGAGGTGATGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCG<br>TCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTTTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTCGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCTGCCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAG<br>CCGCCCCATCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTG<br>CCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCC<br>GTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACC<br>CCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCA<br>GCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGA<br>CCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAA<br>AAATAAATTTAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAATGA</u></font>gattggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgagg<br>caggcagatcatgagttcaagaccagcctggccaatatggcgaaaccccgtctctactaaaaaaaaatacaaaaattagctgggagaggtggtgcccacc<br>tgtagtctgagctactcgggaggctgaggcagaagaatcacttgaaccagggaggtggaggttgcagtgacctgaggtcacaccattgcactccagcctg<br>ggtgacagagcaaggctccatttcaaaaaaaaaaaaaaaaaaagaaaacaatgacatcaacaaatacaacctaaaatcataaaatcataatacacctttt<br>ttttttttttttttttttgagacggagtctcgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	217089944	217092498	3000021	0	-	XRCC5;H2_E_245; RIP_SVA_chr2_216_01	AAACCAACAACTTTGCATAGGG	AGGGAAGGTGTGGAAAAAGATT	OTHER	SVA	SVA_E	ggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaagaaagaaaga<br>aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagcttctgcatagcaaaggaaacaacagagtgaagagatgacttaataaatac<br>tcaaggtgatggataccctaaatatcctgacttgatcattctacactctatgcatgtaacaaaacaagtgtaccccataaatacataaaatatcatatca<br>attttaaaaaccaacaactttgcatagggcatgacgcatcacctctgtgaactgatgagtccaagcatcttgccatgcatctgcttt<font color="green"><u>AAGAACACATGGC<br></u></font><font color="red">GCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCC<br>CGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCT<br>CCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCC<br>TGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGATGGGGTT<br>TCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACT<br>CAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATT<br>GCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCC<br>AGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCG<br>TCTCTGCCCGGCTGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTC<br>TGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGT<br>CTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCG<br>CCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGG<br>GGGGGGGGGGTTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAAGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTTCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACG<br>ACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGTGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAGAATT<br>GAGAAATCGGATGGTTACCGGGTCTGTGTGGATGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAGGAAAAATTCTTCTGCCTTGGGATCCT<br>GTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTT<br>AAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTTAAGTACCCAGGGACACAAACACTGTGGAAGGCCGCAGGGTCCT<br>CTGCCTAGGAAAACCGGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACA<br>CCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACATGGC</u></font>atgggctgggcgcggtggctcacacttgtaat<br>cctagcactttgggaggcctaggtgggtggatcacgaggtcaggagttcgagaccatcctggccaaggcggtgaaaccccatctctactaaaaatacaaa<br>aaaactagccgggtgtggtggcgagcacctgtaatcccagctactcaggaggctagggcagagaattgcttgaacccaggaggcggatgttgctgtgagc<br>cgagactgtgccattacactccagcctgggggacagagcgagactccatctcaaaaaaaaaaaaaagaatacatgccatgtgttaccctaacttcatgag<br>tcaggtgggtgccaggggtaccagagagccaggctatctctagcaccatctaaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3109	551	NA	intergenic
0	chr2	202146659	202149440	3000022	0	-	CASP8; RIP_SVA_chr2_201_01	GAATCCAGCTACGAATATAGAGGG	GATGAAGCAGTCCATGTTACTGTGG	OTHER	SVA	SVA_E	acctttctggtagttatccccctgacaagcctgaataaaaaacactttgggttttccagcaagggaagggcacttcaaaccagtgaactgagatgtcagc<br>tcatagatgggggcctcctgtccatcagtgccatagatgatgcccttgtctccatgggagaggatacagcagatgaagcagtccatgttactgtggtcca<br>tgagttggtagattttcaaaatctcatagatttgctctactgtgcagtcatcgtggggcttgatctcaaaatgaagctcttcaaaggtcgtggtcaaagc<br>ccctgaaaagtgaaatttgaacagtcacgttataccacagtaattcacagaccacagctggagagcacagtgggcataacattgatagat<font color="green"><u>AAGAATTTGA<br></u></font><font color="red">CCCCTCTCCCTCTCCCTCTCCCCGTCTCCCTCTCCCTCTCCCTCTCCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTT<br>TTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATT<br>GCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTTGCTACAACCACCTCCCAGCCGCCTGCCTTG<br>GCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACGCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCT<br>CTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTG<br>AGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGCGGGGGGGGGTGGTCGGCCATCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGTTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCC<br>CCCGCCTGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCTTCCGGCCGGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCA<br>TCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCGCTTCTG<br>CCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACA<br>ATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACT<br>TTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGT<br>CCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAAT<br>CTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCT<br>CCACTATTGTCCTGTGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGA</u></font>accagaaa<br>ttcaagagcaaaaccctctatattcgtagctggattctgcaggcttctaatatttattgccaccagctaaaaacattctcaaaccctgaagcaaatgaga<br>aaggagagagtgttattgttggtctgttttctctagtaaactagtttacaagatgggtaagctatcatttaggcttactactgaaccaattttaaaaatg<br>attatattatttacataatcagaaaaaaacaaaacaatttttgaataaaagatccaacttattttatcctaaaccttctcaaaattatttatgtatagca<br>aaataaaagatatgaattaataagatagaactagaagaccttatacaaaaggttatcccctctctatccctccccattacct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CASP8:NM:001228:8/10
0	chr3	194121173	194121921	3000023	0	+	AFURS1; RIP_SVA_chr3_195_01	GTCTATAGGCAAAACGTGTCTACGTG	GCGATACCTGGCAGAGGCAGTGG	OTHER	SVA	SVA_E	caatccgcccgcctcggcctcccaaactgctgggattacaggcatgagccaccacgcccggccgctcacatgttcagtttaactggggaaagtcaaactg<br>ctctccaaagtggttgtgttggtctacgatgacacctgccatttgtgagagttcctgtgcttcctctctgcccacacgtggcacttcctgctttttgcca<br>tttctatgaaagatatctcagcatgattttaacttttcctttccctgtttaatgatgaacttgaacaccttttcacataattaaggcccacttgtgcttc<br>atttgagaaagctgggtttccttttgcccatttgtctataggcaaaacgtgtctacgtgtcttttgaacacactgataatgctgtctgcatt<font color="green"><u>AAGACTTC<br></u></font><font color="red">CGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGTGGGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCTAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCAGTTTTGTGGAATAGAAAGGCGGGAAGGGT<br>GGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTG<br>CCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAG<br>ATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGC<br>CGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTGTTGTCCTATGACCCTGCCAAATCCCCCTC<br>TGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTC</u></font>tatccttcaagacaccataaaaaaggggaaaagataaaccaca<br>aactaaagatatttgtaacacctatagctgacaaaggcttaatgtcagaagatataaagaatcatgggatccaatcccctttgatgcagcctaatgcagt<br>cagagcccagtaaaggctgggttgactgaaattaccttcaaagtcacgcagccctggaccacagggaagagccactgcctctgccaggtatcgcgggagg<br>tctttcagttccgatcaaggaatgcaactccagagccctgaactgctacactggtgacctggtaagtccgtcatgcataggcacatcgagtgaaagcctc<br>cccgcccccttgcccatgaaattgccagggagccaacatgacagactgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr3	145813640	145815615	3000024	0	+	PLOD2; RIP_SVA_chr3_147_01	GAGGATACGGAGAAATAGGAACG	GTGTTAGTTTGGTGAGGATGATGG	OTHER	SVA	SVA_E	aaaaaaagctcatcatcactggtcatcagagaaatgcaaatcaaaaccacaatgagataccatctcatgccagttagaatggcaatcgctaaagtctgga<br>aataacggatgctggtgaggatacggagaaataggaacgcttttacgctgctggtgggagtgtaaattatttcaaccattgtggaagagagtgtagtgat<br>tcctcaaggatctagaaccagaaataccatttgacccagtaatctcattacagggtatatatccaaaggattctaagtcattctactataaagacatatg<br>cacatgtatgtttattgcagcactatttacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactggat<font color="green"><u>AAAGAAAATGTGGCATATA<br></u></font><font color="red">CCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCCCTCCCCCCTCTCCCTCCACAGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGT<br>ACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTG<br>GTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACTGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGG<br>TGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCT<br>GCCTGCCTTGGCCTCCCAAAAAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTG<br>GGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCC<br>CGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTG<br>AGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACC<br>GCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCTGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGAAGCCACCCCGTCCGGGAGGGAGGT<br>GGGGGGGGTCAGCCCCCCGCCCAGCCAGCCACCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCC<br>GGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGAGTCGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGGCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCT<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCTGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCGGGCCGCCCCTACTGGG<br>AAGTGAGGAGCCCCTCTGCCCAGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATA<br>GAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCTGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACT<br>AAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGA<br>TTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACAC<br>AAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACC<br>CTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAATAATAATAATAATAATAAAA</font><font color="green"><u>AAAGAAAATGTGGCATATA</u></font>tacac<br>catgaaatactatgcagccatgaaaaagaatgagttcatgtcctttgcagagacaaggatgaagctggaaaccatcatcctcaccaaactaacacagaaa<br>cgggaaacaaacactgcatgttctcactcataagtgggagctgaacaatgagaactcgtggacacagggaggggaacatcacacactggagcctgttgag<br>gggtggagggaaaggggagggagggcattaggacaaatacataatgcatgcagagttaaaaacctagatgacggattgacaggtgcagcaaaccaccaca<br>gcacatgcatacctatgtacaacaaacctgcacgttcagcacatgtatccaagaacttaaagtaaaattttaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:PLOD2:NM:182943:7/20
0	chr5	137022579	137023886	3000025	0	+	KLHL3;H5_E_128; RIP_SVA_chr5_137_01	CCTTGTAGTTTGTTGGCATGAA	GCTGAGAGTCTCCTCCCTGTTA	OTHER	SVA	SVA_E	cctagttctgatctggaaggtctccttgtagtttgttggcatgaaataccttctaactcaaggcctgggtccagggagacctgtgaccacagagaccaat<br>gctttcccttgtgtgtgaccctagtgggtgcctgcacccctgcacttacagtagagtgaggtcacaggtctgtctcaagaggcagcaatggtagagaacc<br>ccaggctccatctaaagtcaggggtacaaggaaaaaagcaggcccacgtcagtgggtgggttcaagggagtaagcatggataatcattttctacttctcc<br>tctaaatactgcacaatctaaccttcattcccttcttctaacatctttgcatcatggccttatcttctgcattatactacttta<font color="green"><u>AAAATATTACCTCCCT<br></u></font><font color="red">GAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCG<br>CCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCTGCCC<br>CTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGCGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCTGGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGC<br>GAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAG<br>GGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGG<br>CCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGGAAAAATTGAGAAATCGGATGGTTGCCAGGTCTGTGTGGATAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CACTCCCTAATCTTAAGTACCCAGGGACACAAACACTTCGGAAGGCCGCAGGGACCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAATAAAATAAAATAAAATAA<br>AATAAAAT</font><font color="green"><u>AAAATATTACCTCCCT</u></font>agtgtgcagagcatagtgggctgctgagaaagccacccaggagaggatcacaggcaccacagaaggcctgcataac<br>agggaggagactctcagcctgaagatcatgctgacccagccaggaaaagtaggagggcctgctcactcattcagtgagggaacaggctccatgtgtctgg<br>gaggaagtcacccgacagggaagagaagaagacacccacatggcgcttcctctatcccaagatgatgacataccctgtgtctagcggacagctggatgtc<br>tgtctacactgtctggttgttgggatttggtgactacattgcacaggcttccaggaacatgctttcaatggaaaatgccaactctagccacatgcactcc<br>tcagttac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	1795	470	NA	intron:KLHL3:NM:017415:5/15
0	chr5	75466596	75468901	3000026	0	+	RAP1B; RIP_SVA_chr5_075_01	CACACGACTATAAACATTGTTCCC	CCAAAGAGCTCCTATATAGACTACTCC	OTHER	SVA	SVA_F	acgttacacatgtgaaacaatcactaacaggcaaaaatactaaacctgtatatttggtattgcaaatacacttatgcatgagcaagcaagggattcacag<br>tgagaatctacagctgcagaagcctgaaaatgatttacaaaaattgttaaatcattaaaaaattgtttgaaaatatacacttcttgttgtagacccccac<br>tgtacacacgactataaacattgttccctatgtaaacaaaaaaaggaaacatataataagagatttgaaaagtctggacatttccttcccaacagatatt<br>aaaggcaacgtctttaatctaagacattatactgaaaggactatcatattttaaagacaagatcactgtctccacaggtttttt<font color="green"><u>AAAAATTAAAAAAACT<br></u></font><font color="red">GAGAAGGCTCGAAGGCGCCGCGGGCTGGGGTCGGTGGCTTAGGGAGCCCGTCCGGCCATGGTGGCCGCGGGTGGTGGTTGGCGCGGCTGCGCTGCGGCCC<br>GGGGCAGTGCGGAGCCGGGACAGTCGCGGCGCTGACGCCCGCGGGCCCCAGCTGCAGCTATGAAGCGGAGCCGCTGCCGCGACCGACCGCAGCCGCCGCC<br>GCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAG<br>CGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGG<br>GAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGG<br>CCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGT<br>GGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCTGC<br>CCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAG<br>CGTCTCCGCCGGGCAGCCACCCCGTCCAGGAGAGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAG<br>CCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCC<br>GTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCG<br>TCCGGGAGGGAGGTGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGAGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGG<br>CCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CAATCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCTCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAATACAA<br>AAAAAA</font><font color="green"><u>AAAAATTAAAAAAACT</u></font>atatagctgtgttaatcaaagcgcttattttgtacaataataatgaccttgaatttcttaaaaaaaattacaataagc<br>tacaagtatcaaagaagcgaagttatctggagtagtctatataggagctctttggactttcttttattatgctaaaatagtggtgcttttaggatttaca<br>ttattgtactctccaatacaaagtatggggcatgttaaagtatacagtacaccattttcatacatgtacaacattggtggatgaagaatgtctcttagca<br>gtaatactggatgtagcctctggttttaccagctgcatactctaggactattatataagtaaaaatctctcttgtgatactggaaagtgattagaatgtg<br>caaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:SV2C:NM:014979:2/13
0	chr6	29685489	29688080	3000027	0	+	HLA-F; RIP_SVA_chr6_029_01	GTCATTTGGTTTTAAGAGGTAAGAGG	GGTTGAATAACTGGGGTCAGGTG	OTHER	SVA	SVA_E	agctcactgcagcctcgacctcctaggctcatgtgatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaa<br>tttttgtatttttggtagagacaagggttttgccatgctgcctaggctgatctcgaactcatgaaatcaagctctctgcctgactccatctccaaaagtg<br>ctgggattacaggcatgagccaccaccacacccaacctaaattaattataaaatattaaacatgtcatttggttttaagaggtaagaggaatttccatgg<br>ctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccacctgtgtcccaattaaactc<font color="green"><u>AAAAGAAAGACCCAAGCCT<br></u></font><font color="red">CCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTC<br>TCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGC<br>CTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGG<br>CTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCC<br>CAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAGGAGCCGAGATTGCAGCCTCTGCCCGGCC<br>GCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGGGGA<br>GCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCC<br>ATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCGGCCCTGTCTGGGAGGTGAGGAGTGT<br>CTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTC<br>TGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGA<br>GGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGTCGGCC<br>AGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAG<br>GTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAG<br>GGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAG<br>CCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGAACAGTCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGG<br>AATAGAAGGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTG<br>TACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAGA<br>TGGATTGAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGG<br>ACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTAT<br>GACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAGAAAGACCCAAGCCT</u></font>tgctaggctgattctatcatcccccccatgatagacgtgtaaccttggtcattcacctgaccccagttattcaaccaaca<br>ataatgtaagtcctgccttgaagggatttttgcatatataattaaggtcctaaatcaattgactttaagacagggattatccctggtcgggctgtcctca<br>tctggcgagcccctgaaaggactgggttcttcctgatcagagagattcacagtgtgagagggattcagtgtgagggggttcctccaatgtggattctaaa<br>aatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgagagcagcctctctctaccttgacagtaggcaaggaacaggaaccttagtcct<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr6	29899783	29901526	3000028	0	+	HLA-G; RIP_SVA_chr6_030_01	NA	NA	OTHER	SVA	SVA_D	aagcatcattaaagtaaaaacagaaaaatttcgggccttatggtgtatatgttctagatgcaagcttgtccaacccgcagctcgtgggctgcatgtggcc<br>caggacaattttgaatgtgaggacttttttgcttatctgtggtgcacctgagtcccggagtgagtgcacccacctccctcagggtcaggagtgaatgctt<br>taggaaccctccttttcagtgacctgaaaaagatagagggcacacttactgtgataacccagagtatcagtcaagggggcttgaccttcaaggagttatg<br>ggaaagcttaataaagggtggtgtcccagggtcagaaaagatgggcagacagcaagagcactgcttgatatctatgataagcatgt<font color="green"><u>AAGAATTGAGGAGC<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTGCCTCTCCCTCTCCCTCTGCCACGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCT<br>GATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCCGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCA<br>GGCGCGCGCCGCCACGCCTGACTGGTTTTCATATTTTTTTGGTGGAGAAGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGCGA<br>TCCGCCAGCCTCGGCCTCCCGAGGTGCCAGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCG<br>GCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCAAGATTGCAGCCTCTGCCCGGCCGCCACCCTGTCTGGGATGTGAGGAG<br>CCCCTCTGCCTGACTGCCCAGTCTGGAAAGTGAGGAGCATCTCTGCCTGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTTTCTGCCCGGCCGCCCATCA<br>TCTGAGATGTGGGGAGTGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGTGACCCCGTCTGGGAGGTGAGGAGCGTCTCT<br>GCCCGGCCGCCCTGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCACTCCGGG<br>AGGGAGTTGGGGGGTCAGCCCCCCGCCCAGCCAGCCTCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCT<br>CTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCTCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCTCCATCC<br>GGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCACCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCTGCCCCTACTGGGAAGTGAGGAGC<br>CCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGTTTAGTGGAATAGAAAGGGGGGA<br>AAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCCTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGGAAAATTC<br>TTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGT<br>GCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGG<br>AAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCC<br>CCCTCTGTGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGAGGAGC</u></font>aagcttcacattcagaatccagtggctgaggaagtatccata<br>tccctaagagaaagaaccttgggacaccatgactgttacatgctgggacaattccatcagcccttctgcaaaggagcctatagccatttaatcaggagat<br>gggataagtgttaacattgggtgtgagctaacattgctgcccagattcccacagcaccattatgtccctatcacagtggggcttacagaggccagggaat<br>aaacctggacaaattatgccccacggtggaatcactgggtccataaatcctgtcctggttatctccccattctctgtaaaaaggattctctgtaaaaaga<br>ttacatcgccctaaaccaggacctgagctcttggactgcggcgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	74369527	74371707	3000029	0	-	SLC17A5; RIP_SVA_chr6_074_01	NA	NA	OTHER	SVA	SVA_D	ggacaacagagtgagactccatctcaaaaagtaattaattactaaattggtgatttaaatatctgcccctccatttactttttattccccatatattcct<br>acatacttgaaaatttcactaaggccaatatgatgaggcactgtgaaacacaatgaacacagtgaaaggacaagaactgggatctgctcaggttgcagaa<br>aataaataagactttgttccagctcctaggaaacctacagttataaaaggaaactaaaacattaaataatcaactactaactataaaattccatacagaa<br>aatgatatgtatcctaaaagagatataattaaaatcaaatgggttgttcctaagataggtaagctcattttgcaaagcaaatttaactctaa<font color="green"><u>AAAAATGG<br></u></font><font color="red">CAGGCCTGGCCTCCTCTGGGTGGATTTTCATTCTGCAGCATTCATTCAGGAAGCACTCATGAAGAGCCTACCAGGTGCCGGCCCTGGCCTGGGGCTGGGC<br>TTAGAGCCGGGGCAGGATGGCCCGGCATCTGCTCCATGGAGCTCACAGCCCAGCCTAGGCTGGCAACTCCAGTCTGCCCCAGTTTCCAGTTCTGTCCATT<br>CCCCTTGCAGCTCAGCATGGATGAAGCTTTGAAATCCAGCTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCCACGGTCTCCCTCTCCCTCTGTTTCCACG<br>GTCTCCCTCTCATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCC<br>TGCGATTGCAGGCACGCGCTGCCACGCCTGACTGGTTTTCGTATTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCTGGCCGGTCTCCAGCTCCTA<br>ACCGCGAGGGATCCGCCAGCCTGGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCCGGCTGGAGTGCGGTG<br>GCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCATCCTCTGCCCGGCCGCCACCCCGTCTGG<br>GAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGAAGTGAGGAGCCCCTCTGCCTGGCTACCCAGTCTGGGAAGTGAGGAGCGTCTCCGTCCGG<br>CCGCTATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCTGGCAGCCATCCCATCTGGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGT<br>GGGGAGCGCCTCTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCACCTCTGCCCGGCCGCGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCAGCCAC<br>CCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCAGCAGCCGCCCCGTCTGAGAAGTGAGGAG<br>CCTCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCCTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCGCCCGGTCTGGGAGGGAGGTGGGGGAGTCAGCCCCCCGCCCGG<br>CCAGCTGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCTCGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGGCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAG<br>GTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCATCCGGGAGGTGAGGGTCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCACCACCCCGTCTGGGAGGTATGCCCAACAGCTCATTAAGAACGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGGGGGAAAGGTGGGG<br>AAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTATACTAAGAAAAATTCTTCTGCCTT<br>GGGATCCTGTTGATCGGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGT<br>GCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCGTCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCA<br>GGGTACTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGTG<br>AGAAACACCCAAGAATGATCAATAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAACAAAATAAAAT</font><font color="green"><u>AAAAATGG</u></font>taatggcggcc<br>aagcgcggtggctcacgcctgtaatcccagcactttgagaggccaagcgggggtggatcatctgaggtcaggagttcaagaccagcctggccaacatgct<br>gaaaccccgtctctattaaaaataacaaaaattagctgggcatggtggcaggctcctgtaatcccagcaattcaggaggctgaggcaggagaatcgctgg<br>aacccaggaggtggaggttgcagtgagccaagatcacgccattgcactccagcctgtgtaatgagggttaaactccgtctcaaaaaaaaaaaatgctaat<br>ggctaacatatattgaaatgtaataattacagtacagtacccaccaggtacagtactgtaatttacaggtattatcttatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	158548283	158549066	3000030	0	+	SERAC1;H6_F_172; RIP_SVA_chr6_158_01	CTCAAGCAATTCCTTGCCTCTACC	CTTCTATAGTTCGCTCAGGTAACAGC	OTHER	SVA	SVA_F	gaccaacctaggcaacaaagtaggacccccgtctctacaaaaagtttttcaaattagccatgcacaatggcacgtgcctgtagtcccagctactcgggag<br>gctgaggtgggaggatccattgagcctaggagtttaaggctgtagtgagctatgaccacaccactgcactctagcttcagcaacacagtgagattctctc<br>aaaaaaaaaaaaaaattacataaataattagatgatcatcatggcaaacctgctctcctatgatcatctacaatactgattatcttaggcgcagattatc<br>tacaatctcaagcaattccttgcctctaccaaaataacatgttctaaggacccataactaaccctaagtagagccttgtctatt<font color="green"><u>GAAAAATGAACATATC<br></u></font><font color="red">TCGGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGG<br>AAGTGAGGAGCCCCTCTGTCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATA<br>GAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATTGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACT<br>AAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGA<br>TTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACAC<br>AAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACC<br>CTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAATGAACATATC<br></u></font>atgaggggtagaggtgggagaacaaagtaaaaaatactcagtatataaagctgttacctgagcgaactatagaagaatgaagatgttcattcaaagccat<br>atttccaatgacacgcattatatttctctgtactttagggcagtccttgtgaagtcggtacagcctctgaagtagctgcaggcctccatttgcttcgatt<br>ttatcacaatgtgtggatatctggcacaataaataaacagaagctcccttgacattgtacaaattcatgacgtgagatgacacagcctggtcatggggac<br>agctaggtagctcccactcaagggcagggatgcagggagactcctcaaagctcttgtctcagcttgcttaaataagcaaatccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:SERAC1:NM:032861:10/17
0	chr7	1185079	1187654	3000031	0	-	LOC90637;H7_E_5; RIP_SVA_chr7_000_01	AATTTTGAAACTGGGTGGTCAG	TCATTTCCATCAGGtAGGCTTT	OTHER	SVA	SVA_E	cccactgggaggcttggaacagatccccagaggataaacggggactgctgtataatttttgtagcacagagttagaagtgtgtgtatatttctagaaatg<br>caaataaaaccaaggcctgaagagtaaaaaaatatttacatgttgaaataatattttgaatatgctaggttaataaaacattaaaatgaatttcacttgg<br>gttttactgtgactgctcaaaattttgaaactgggtggtcagctcggtgctgtccctgttagatggcgttgtctagctctcccaccaaaggccaaacagc<br>cctggcacattttctcagcggggagaggcggcgcctggttcatgcattgcgttttctgtcttcgatttgacggagtattgaagtat<font color="green"><u>AAAACTTAAGAGTG<br></u></font><font color="red">CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGG<br>ACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCT<br>GACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCC<br>CGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCC<br>CAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATC<br>GTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCTGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTC<br>TTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGG<br>ATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGG<br>CAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGG<br>GAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGTTGG<br>GGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCCCTCTGCCCGGCCGCCCCTACTG<br>GAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGG<br>GGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCCGCCCAGCCAGCC<br>GCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAA<br>AATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGA<br>TCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTT<br>TGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCG<br>CAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTG<br>CGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTTAAGAGTG</u></font>aggccaggtg<br>tggtggctcaggcctgtaagaccaaaactttgggggggccaaggcgggtggatcacttgaacccagaagttcaagaccagcctgggccacgtggcaaaac<br>cctgtctctacaaaaaatacaaaaattagccaggtgtggtggtgcgtgcctggagtcccaccaactcgggagacagaggtgggaggatcgcttgagccca<br>ggccctcaaggctgcagtgaaccatgactgtgccactgcactccagtctggatgacagagcgagacccttctcaaaaaaaaaaagttgatggaacccaaa<br>gcctacctgatggaaatgaaggtgtccccagagtgccactgagagcgggcgagtcggccgtggccctgccggctgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	3099	510	NA	intergenic
0	chr7	10504317	10506133	3000032	0	-	BC002644;H7_F_22; RIP_SVA_chr7_010_01	CATGGAACTCTGCTTGACGTACAC	CCAGCATTGTGCTTCCTGTATAGCC	OTHER	SVA	SVA_F	tacatatgtatacatgtgccacgctcgttttaaaagcatatatttaaaactaatggcaattttatactacacagtttcattcagctgtttaattcctcct<br>tgctagtagttgaaagttgcatgtccctagaaatgctgtgtaatgatttactgtcatggaactctgcttgacgtacacaataaggatataaatatgttgc<br>ctaacctactatttttaatactggaatttgcttaaaataaatttctaaccttgtacattttcattattatattaacctggggaaaaattctttgtaaaga<br>tatttaattaaaatccttatactagacagtattattccattcttacatagctgtaaagaaatacccgagactgggtaatttat<font color="green"><u>AAAGAAAAGAGGTTTAA<br></u></font><font color="red">GTCTTTGCCGCCGCGCCAGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTG<br>GCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATC<br>ACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCT<br>CTGCCCGGCCGAGACCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGT<br>CCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCA<br>TCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCCCTCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCA<br>GCCCCCCCACCCGGCCAGCCGCCCCGTCGGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAG<br>CCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGA<br>CAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGGTGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTA<br>ATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTATTGTCCCATGACCCTGCGAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAACAAC<br>CAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAGAGGTTTAA</u></font>ttggttcatggttacataggctatacaggaagcacaatgctggcatgtgcttggcttctggggggc<br>ctcaggaagcttccaatcatggcggaaggcaaaggggagcaggtacttcacatggctggagcaggaggaagagagggtggaggtgccacacacttttaaa<br>caatcagatcttttgagaacttatattgtgtgaacagcactaaggggatggtgccaaaccattcatgagaactgcccccgccccgccccgccccacaatt<br>caatcactttccaccaggccccacctccaacactgaggattacaattcgacatgacatttggaggggacacagttccaaatcgtatcacagaccatattt<br>agataataggcaaaaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr7	55286759	55289061	3000033	0	-	EGFR;H7_F_61; RIP_SVA_chr7_055_01	GGGATAAATTCTCTTGTGGGACTGAG	GTGAGATACTGATCCAAGTCTCAG	OTHER	SVA	SVA_F	tgtctatattaaaactctccctctctctctatataatcacttattatttccttagttgtaattctttcactgttcaattagaactttactaaattattat<br>atgtctttcttttggttaaggtagtagatgaagtttgaaatcatcttttattctggaatgctagtgggcctttctcaactaaggtcccaggagagaacta<br>agccctacaaaaaacaaataggtgaccgttgtctctattcccccaaggatgatgcataactagcacaattctagaagggtaggagagaaggtattaatta<br>ttttcagtagattcctgcatgcatcagggataaattctcttgtgggactgagaacacccaacaccctgctgcttcaactcccttt<font color="green"><u>TAAAAGCACATTGCA<br></u></font><font color="red">GAGTTGCCAATTAGCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCC<br>TCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCGTCTCCGTCTCCGTCTCCCTCTCCC<br>CACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAG<br>TGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAG<br>TGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATC<br>TCGGCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAG<br>GAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCG<br>CCTCTGCCCCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTG<br>AGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCCCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCG<br>CCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCCGCCCGGCCAGC<br>CGCCCCAACCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCGGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCTGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGG<br>CCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>TAAAAGCACATTGCA</u></font>actctttctgttgctggttcctgtaagcaatacatttaaaaatattatttgtttcttaggatttaaaatgtgttgtattgaa<br>acgttgacccatcatggctgagacttggatcagtatctcacttcaggaaacaggactcaagctgggcgcaggggctcacgcctgtaatcccagcactttg<br>ggaggccgaagtgggtgaatcacacggtcaagagattgagaccatcctgaccaacatggtgaaaccccgtctcaactaaaaaagcaaaaattagctgggt<br>gtggtggctggtgcctatagtcccagctactctggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcatgcca<br>ctg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr7	101001267	101003795	3000034	0	-	FLJ14117; RIP_SVA_chr7_100_01	CAAGTGACTCTCCTGCCTCAGCC	CTCACGCCTGTAATCCCAGCAC	OTHER	SVA	SVA_D	ggccaggagttcgaggccagcttggacaacatagtgagacccccccatctctacaaaaaaaaaaaaaaagcaaagcgtggaggtgtgtgcctgtagtccc<br>agctactcaggagtctgaggcaggaggattgcttgagcctaagggttcaaggctgcagtgagccatgatggtgccatgacacttcagcctgggttacata<br>ctgagcctgtccttctcccctcaaagaaggattgtaggattgttgttagaagacgacaggaagatggccaagcatggtggctcacgcctgtaatcccagc<br>actttgggaggccaaggcaggtaaatcacaaggtcaggagctcgagaccagcctgcccaacatggtgaaaccccgtctctact<font color="green"><u>AAAAATACAAAAATTGG<br></u></font><font color="red">ATAACTAGCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCTCTGCCTCTGCCTCTCCCTCTCCCCTCTCCCCTCTCCCTCTCGGTCTCC<br>CTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACTGTACTGCCTCTGCCTCTGCCTCTCCCTCTCCCCTCTCCCCTCTCCCCTC<br>TCCTCTCGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCTGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCT<br>GCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCAATTGCAGGCGCGCGCCACCACGCCTGACTGGTTTTCATACTTTTTTGGTGGAGACGGGGTTTC<br>GCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTTGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTGGTTCACTCA<br>GTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCGCTACAACCTCCATCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCAAGAT<br>TGCAGCCTCTGCCCGGCCACCACCCCGTCTGGGAAGTAAGGAGCGTCTCTGCCTGGCTGCCCATCGTCTGGGACGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCGGCAGCCATCCCATCTGGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCGCCTCTACCCGGCGGCGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCAGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCCGCCCAGCATCCGCCCCATCTGAGAAGTGAGGAGCCCCTCCG<br>CCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGTCCCTCTGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCCCCGGCCCGGCCAGCCGCCCCGTCCGGAGGGAGGTGGGGGGGTCAGCCCATCCGGGAGGGAGGTGGGGGCGGTCAC<br>CGCCCGGCTAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTG<br>CCCGGCCAGCCACCCCGTCCGGGAGGGAGGTGGGGGTGTCAGCCACGTCGGGAGGAGGTGGGGGGTCAGCCGCCCGGTCCAGCCGCCCCGTCTGGAGGGA<br>GGTGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCAGG<br>CCAGCCACCCCGTCTGGGAGGGAGGTGGGGGGCTCAGCCCCCCGCCCGGCCAGCCGACCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCAGCCCGGCCAGCCGCCCTGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCAGCTGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCACCACCTCGTCTGGGAGGTG<br>TACCCAACAGCTCATTGAGAACGGGCCGGGATGACAATGGCGGTTTTGTGGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTG<br>CCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGATAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTA<br>CCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGG<br>CAGCATGCTCGTTAAGAATCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGA<br>GACCTTTGTTCACTTGTTTATCTGCCAACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAA<br>AAAAAATAAAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAAATTGG</u></font>ctgggcgtggtggcgggcgcctgtaattcccagctactcaggaggctgaggcag<br>gagagtcacttggacctgaaaggcggaggttgcagtgagccaagatctcgccactgcactccagagcaagactctgtctcaataaataaataaatggaat<br>gtccatacttcccaagtcccaagtctctgtcttaaactcagagttggtcatctaggagtaaacagcctcctaatggaattgcttcgttcctctcgccctc<br>cttccctcccttgaggcctaaaagatttggagaatttaggttatcaggggatgttcagtgcctcccccaaaaagaatctgaactgtgctccttgggcagt<br>tggccaacacctaataaatgatgaggtca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr8	85753075	85753076	3000035	0	-	TNKS; RIP_SVA_chr8_048_01	GGCAGCCAGAGAGAAAGGTCGG	GAGCTCTTTTAGGGCAGGCCTG	OTHER	SVA	SVA_F	tgggtttcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttaattggagcatttagcccatttatatttaagg<br>ttaatactgttatgtgtgaatttgatcctgtcattatgatgttagctagttattttgctcattagttgatgcagtttcttcctagtcttgaaggtcttta<br>caatttggcatgtttttgcagtggctgttaccggttgttcctttccatgtttagtgcttccttcaggagctcttttagggcaggcctggtggtgacaaaa<br>tctctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggtt<font color="green"><u>GAAAATTCTTTTCTT<br></u></font><font color="red">GGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCTGGGAGGCA<br>GCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTG<br>CCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAG<br>CGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCA<br>TCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTC<br>TCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCT<br>GAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGG<br>GGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCC<br>GGCCAGCCGCCCCGTCCAGGAGGGAGGTAGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAG<br>GTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGG<br>TTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACC<br>TTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGA<br>AGGCAGCATGCTCGTTAAGAGTCGTCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGTGGGGTCCTCTGCCTAGGAAAACC<br>AGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAA<br>TAAAAAAATAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTCTTTTCTT</u></font>taagaatgttgaatattggcccccactctcttctggcttgcagagtttctgccgag<br>agatcagctgttagtctgatgggcttccctttgtgggtaacccgacctttctctctggctgcccttaacattttttccctcatttcaacttcggtgaatt<br>tgacaattaggtgtcttggagttgctcttctcgaggagtatctttgtggagttctctgtatttcctgaatttgaatgttggcctgccttgctaggtttgg<br>gaagttctcctggataatatcctgcagagtgttctcccacttggttccattctccctgtcactttcaggtacaccaatcaggacgtagatttggtctttt<br>cacatagttccatatttcttggaggcttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:RALYL:NM:173848:4/9
0	chr9	33423377	33424654	3000036	0	+	AQP3; RIP_SVA_chr9_033_01	NA	NA	OTHER	SVA	SVA_E	aggaatatgagaaatatccaggtttgttttaatttttaatcctttatatatttacctttttttttttgagacagggtctttgttgcctaggctggagtgc<br>agtggcacgatcttggctcactgcaacctctgcctccctgattcaagcagttctcatacctcagcctccggagtagctgggattacaggcatccgccacc<br>acgcctggctaattttcgtatttttttgtaaagacagggttttgtcttgttggccaggctggtcttgaattcctgacctcaagtgatctgcccgcctcgg<br>tctcccaaagtgctgggattacaggtgtgaactaccaccctgcctatatttacctcttgaatccatcgattttatggcatgaggt<font color="green"><u>AAGAATCTAGTTTTT<br></u></font><font color="red">CGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGGGGTGGAGGGGTCAGCCCCCC<br>GCCCGGCCAGCCGCCCTATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGTGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAG<br>GGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTT<br>CTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTGAATGGATTAAGGGCGGTGC<br>AAGATGTGCTTTGTTGAACAGATGCTTGAAGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAA<br>GGCAGCGGGGTCCTCTGCCTAGGAGAACCAGAGACCTTTGTTCGCTTGTTTGTCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCC<br>TTCTGCGAGAAACACCCAAGAATGATCAATTAAAAAAAAAAAAACAAAAAAACAAATATTTACGTATGATAATGAGAAGAACACTGTCCTAGATGGCTGA<br>AATGCTAATAGTCTTTAATTCACTATTTTCTTATTCTGACTGTTGCAAAGATTTGTAGTTTTATTGATGATTCTCACTCATGTTCTAAAATAGGAGTTGG<br>CAAACTATTGGCTGCCTGTGTTTATGAATAAAGTTTTCCTAGAACACAACAACAAAAAAAAAACAAACAAAAAAAAAA</font><font color="green"><u>AAGAATCTAGTTTTT</u></font>gctttcc<br>agaggtgagaagaaggggtcttcttcaggaaccccgagccccatcctcttagccctcagtttatgttttttttttattctttatttttttgattcttttt<br>tttttttttttgagacggagtatcgctgtgtcgcccaggctggagtgcagtggcccgatcttggctcactgcaacctccacctcctgggttcacgccatt<br>ctcctgcctcagcctcctgagtagctgggactacaggcgtccaccaccacgcccggctaattttttgtatttttagtagagacagggtttcactgtgtta<br>gccaggatggtctctatctcctgacctcatgatccgcccgcctcggcctcctgaagtgctgggattacaggtgtgagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SUGT1P1:NR:003667:5/7	
0	chr9	84324364	84326926	3000037	0	+	BC036431; RIP_SVA_chr9_081_01	NA	NA	OTHER	SVA	SVA_F	gtcaagaccagcctggccaagatggtgaaaccccgtctctactaaaacaaaaattagccaggcgtggtagcgggcacctgtaatcccagctactcgggag<br>gctgaggcagagaattgcttgaacctgggaggtagaggttgcagtgagccgagattgcaacatgcactccagcctgggcgacagagccagattccttctc<br>aaaaaaaaaaaaaaaaaaaaaaaagatattgaaacagcttgaagcaagacctgttctttctagggttctcagtctcttttggagttagtttcggtgggct<br>ttaccaacggaagggagaggtaaacatggctggagggtatgcctggcagtagatttgggagagggaatttcttctcctgcacatc<font color="green"><u>TAAAATGGCTCTAGC<br></u></font><font color="red">GCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCGTCTCCCTCTCGC<br>TCTCCGTCTCCCTCTCGCTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCATCCTCCC<br>TGCCTGATTCTCCTGCCTCAGTCTGCCGAGTGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACAGGGTTTCGCTGTGTTGG<br>CCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATG<br>GTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCT<br>GCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCTGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAA<br>AGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCACCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCC<br>GGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTG<br>AGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCC<br>ACCCCATCTGGGAAGTGAGGAGCATCTCTGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCAT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCCCGCCCGGCCAGCTGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCA<br>GCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCG<br>TCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCGGCCCCCCGCCCGACCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGTGTC<br>AGCCCCACGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGG<br>CGGCCTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTC<br>ATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCAC<br>TCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCA<br>AGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAATAAATAAATAAATAAATAAATAAA<br>TAAATAAAATAAAAAAAAAAAAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAATGGCTCTAGC</u></font>agagccctctttgccctcatac<br>ttccgtcccctttgtaccttccacttgactaccccctcaccaccctgcattcccctcagtatactaatctgggccacatttatcagcgtgtgtcattact<br>gttcattaaagttgagaaaccacattccattttactctttcttacctcctgccaccccaaaggatcaagctagtcttccttgtacattctgatgctgctt<br>agactcaggaaagaaacagaagtggaatgccctgctcaggagttccggccttggccatatcttctcctaaaaattaaccagagttggccgggtgcagtgg<br>ctcatgcctgtaatcccagcagtttgggaggctgaggtgggcagatcacgaggtcagaagttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr9	110033455	110035444	3000038	0	+	RAD23B; RIP_SVA_chr9_107_01	NA	NA	OTHER	SVA	SVA_D	ctgctgggatgggcagtgttgactccagacctgcccattaggttggttgaaactgtctgatctacatcacagtctgactctctctctctgcccaattgtg<br>cttcctttctactttcctttcaaaggaaatattatcaccattgtctaaaggctttccttaccaaatcctgcttcctcccttctatttttcacaactgata<br>accatcaaaaaaaaaaagactactattcctaactgttttggtgtctgcttcccaggtacctgaacttacacagtgactgaacaacaaataagagatttac<br>aaggatgagaaacttgagctgtaagcagcaggatggaggttgaagaagcccgaagtctaagaagacaaagattataataataataat<font color="green"><u>AATTATTATTATT<br></u></font><font color="red">GGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCAGGATGGCAGACGGAGTCGCGTTCACTCAGTGT<br>TCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCTGCCTGCCTTGGCCCCCGAAAGTGCCGAGATTGCA<br>GCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGTAGCCTCTCTGTCTGGCTGCCCAGT<br>CTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCTGCCGCCCCGTCTGGGATGTGAGGAGCGTCTCTGC<br>CCGGCCACCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTTTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACACCGTCTGAGAA<br>GTGAGGAGCCCCTCCGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCCTCCGGAAGGGAGGTGGGGGGGTTAGCCCCGCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCG<br>CCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGG<br>GAAGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGAGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTATCAGCCC<br>CCCGCCCAGCCAGCCACCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCACGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGC<br>CGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCGCCACGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCA<br>GCCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACC<br>CCGTCTGGGAGGTGTACTCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAG<br>AAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTT<br>GATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTGAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAA<br>CAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTTTAC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTGTGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCA<br>AGAATGATCAATAAAATAAATAAATAAATAAATAAATAAAATAAAATAAAATAGCACAATTATAACAATATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTATTATT<br>ATT</u></font>attattattcttattttgagacagggtctcatgctgtcacccaagctggagtgcaatggcacgatcacagctcactgcagcctcaacctcccaggct<br>caagtgatatttccacctcagcctcctcagtagctgggatcacaggcatgtgccaccacacccagctaatttttttttatttttttgtagaggcggagtc<br>tccctatgttgctcatgctggtctcaaactcctgctggatcactcaagtgatcctcccacctcagcctcccaaagtgttgggattacaggcgtgagacat<br>gatgcacagtctgacaaaaggtatttttaaagtttaattgttgcaggctgaaactgtttttaagtgtttaattgtgggatgctgaaatgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans.Genetics. 2004 Oct;168(2):933-51.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID: 15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	158650458	158650459	3000039	0	-	Alpha spectrin; RIP_SVA_chr1_155_01	AACTTAGAATATTTAGCT	TGCATTTTGACTTAATTTAT	OTHER	SVA	SVA	ctgatatgttgaattgagtagaaacaggatgaatttatccctcatgtttcaaaacacaaaagggtactttcagggtctcttgccagtaatgccacaaact<br>tgctaaagaactgcccgaaagagcactttcccttgtgccaaggtgctaccttaacaaatatacttctgctgctggccttttccaggagagcttctcccag<br>tctcccccagtatctccatttgagttatcctgggaatgcaagcaggagttttgagtttttgacctacagaaactcctaaatgtttgctggcaactcaatc<br>aacttctgtgtctacaggaggctatagcgacatcagtggagctaggtgaagactgggagcgcaccgaagttctgcataa<font color="green"><u>GAAATTTGAAGACTTCCAAGT<br></u></font><font color="red">TGCATTTTGACTTAATTTATGAGTATTTATTTATTATGAGCCATTTGACAGCATGCAAGACACAACACAAAACATAATACATGTACATCACATAAATATA<br>TCTAAACATGAATACATATCCACAAAGATCCAATAGTTTCACCTTAGAATTCTAGCTGTAAGATAGCAATATAACTTAAGATTCTATATAAGATCACTGG<br>ATAAGAATTATTTTTCTGTCAAAATTGAAATCTGTTTACATGGCTAAATTTTGTTTGCCCTATTGGGTAATGTAAGGAAAGCTGTAGACCAAAATTTGGG<br>TAGAGCATCTTTAGGACAGTTTGGCAATCTTATAACTGGCTTTAAAGTCACTGGTAAATAAAATAAAATAGCTTCAGAATCATCAGCATTCATTTTTGTT<br>TAGGTAGGAAAGTTTTATATATGCCTGTTGGATATTTTAAGGTGTCAGGGTTTGACACAAAGGTTGTGAAACTATAAACCTAGACAAAAACAGAGTAATC<br>TTTGTGTAATTTTTTAAACAAAGACTAATTTAATGTTGTTGGTTCATAAACAGCTAAATATTCTAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAATTTGAAGACTTCCAAGT</u></font>ggagctggtagctaaagaagggagagttgttgaagtgaaccaatatgccaatgagtgtgc<br>cgaggtgaggtgggagcaaaatattcactccgtgcaaagggttcttatccttaagaataacttctggccattagtagatggatatgaaggagatggggca<br>ttgtgagaaaacagaggttggcatgttcctggagtaacatattctgaacagtttcctctcccctctggacccaccccttacaagtctattgaaatggagg<br>gttgagagagaaagagagagtgtgtttttgtgtgtttggagaaattaaatacacaatgggcagtgaagctattgccatttatatagtagcttctgtacca<br>tgcagtacactgattactc	Other	<UL><LI>Hassoun H, Coetzer TL, Vassiliadis JN, Sahr KE, Maalouf GJ, Saad ST,Catanzariti L, Palek J. A novel mobile element inserted in the alpha spectrin gene: spectrin dayton. A truncated alpha spectrin associated with hereditary elliptocytosis.J Clin Invest. 1994 Aug;94(2):643-8.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8040317">PMID: 8040317</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	50	NA	NA	Hereditary elliptocytosis	exon:CDS:SPTA1:NM_003126:5/52
0	chr9	108401938	108401939	3000040	0	+	SVA-FCMD; RIP_SVA_chr9_105_01	NA	NA	OTHER	SVA	SVA_E	cttccactatcattaagacctgggctagatcacctctaacatctcactcagggaaggcaatgtgttgccataaaaagaccacaagcttttgagttaggcc<br>tgaatttgaatttcagcttaatcatgtgggatttatggtgggggccctttcagtctcaatttccacattagtgaactggggaaatgatacatacttctaa<br>gggtttttagggggattaaatgaagtatacagttcttagcctcaggcctaggattaagtaagtactcaagaaatgtgcaattttctagttccatgtttct<br>tttctaatcttcaaatggaattatagaaaccatgggtcagaacatattcctttactcaaaagattgcatgactgaatttgctt<font color="green"><u>AAGAAAAAAAAAATTGT<br></u></font><font color="red">GTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCT<br>CTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCC<br>CTCTCCCTCTCCCTCTCCCTCCACTGTCTCCCTCTCCCTCTCCCTCTCCCTCCACAGTCTCCTTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGAC<br>GGTGCTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTACGCCTCACTGGTTTTCGTTTTTTTTTTGGTGGAGACG<br>GGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCACGAGTGATCCGCCAGCCTCGGCCTCCCGGGGTGCCGGGATTGCGGACGGAGTCTCAT<br>TCACTCAGTGCTCAGTGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAGCCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCCAAAGTG<br>CCGAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCTCTCTGCCT<br>GGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCTTCCCATCTAGGAAGT<br>GAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGCCGCAA<br>CCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCC<br>CCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCGGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGTCGCCCCGTCCAGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCCAGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGTGGGGGTCAGCCCCCCGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCTGGG<br>AGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCT<br>CTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCC<br>GCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGTCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCC<br>TGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGG<br>GAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGACCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGCGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGG<br>CCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCTGTCCGGGAGGATGGT<br>GGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAA<br>AAAATTGAGAAATCAGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGG<br>GATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGC<br>TTTGTTAAACAGATGCTTGAAGGCAGCATGCTGGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCACAGG<br>GTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAG<br>AAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAAAAAAATTGT</u></font>atcaagtcattaatacaattatacattaattatattac<br>attaatacaatatatggtttgtgaattcagagacattaccagtttgcctccttctctcaatagaacttgtattttcattttcttggttaagcagttgtct<br>cctaatattatcccatatgctacctagtttgctggtcccaagcagtttactgtacttcactagatttggtacctgctctcccctggacttctttttcaat<br>attctagcctttcctagatgtaaatctttacctccttgttagtgaaattagatataagccatgatttggagagggaagaaatctggaatacttaatttca<br>tttaattatctatgctgatgaatgcctgtatcattgttaataaag	Other	<UL><LI>Kobayashi K, Nakahori Y, Miyake M, Matsumura K, Kondo-Iida E, Nomura Y,Segawa M, Yoshioka M, Saito K, Osawa M, Hamano K, Sakakihara Y, Nonaka I,Nakagome Y, Kanazawa I, Nakamura Y, Tokunaga K, Toda T. An ancient retrotransposal insertion causes Fukuyama-type congenital muscular dystrophy.Nature. 1998 Jul 23;394(6691):388-92.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9690476">PMID: 9690476</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Fukuyama-type congenital muscular dystrophy	exon:3UTR:FKTN:NM_001079802	
0	chrX	100615087	100615088	3000041	0	-	Btk; RIP_SVA_chrX_100_01	TGGATGAACTGCCACATT	CCTCACTTATGCAAGGAG	OTHER	SVA	SVA	gcatcctcatcagagactgttcttcccacaccagactgaacatgctctccctccaagtacttcccagcgtgcagctccctatacatggcctctgccacat<br>ctctgagcctctgttgttgggcacatataaccaatgcaacatgtgcataagctctgcacctcactggctcactgcctaaccatgcatcagagacatgatt<br>gtctttgagggaggtgcatgatacatatacctccatttgagatttgttctgagctcagggacgtgggcatatgaatctgtctcctggaggctggggaggt<br>gctggatgaactgccacattgtttccttcacaggcaggaaggctacattcctagtaactatgtcactgaagcagaagactccata<font color="green"><u>GAAATGTATGAGTAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAATGTATGAGTAA</u></font>gtatgtttatgtcagtccacaatcttccaggaggaactctctctctctatatatatatatatttatttatttata<br>tatattttatatatatttatatatatatataacacacacaagtgtatatatgtatacatatgtatacatacactggtgtatatataggtatattatgtat<br>acatacacaagtgtgtatatatatatatacacttttttctactttcaacatattttttatttcaagatatatattaaaattagtaccatctgaatcaaat<br>gatgccaccacctcaaattagtgtatctgtcttacctttaccccccaaacaccctccatttatgagagctggagaggtcaccatgccctcaaatccagaa<br>gaatcacact	Other	<UL><LI>Rohrer J, Minegishi Y, Richter D, Eguiguren J, Conley ME. Unusual mutations in Btk: an insertion, a duplication, an inversion, and four large deletions.Clin Immunol. 1999 Jan;90(1):28-37.<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9884350">PMID: 9884350</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Immunodeficiency X-linked Agammaglobulinemia (XLA)	exon:CDS:BTK:NM_000061:9/19
0	chr1	46705885	46708626	3000042	0	+	H1_F_95; RIP_SVA_chr1_046_01	GTGGTGGAAAACAACACAAATG	GaAGGAATGAGGATCACCAAAA	OTHER	SVA	SVA_F	tgaggacccttgtgattacagtgggcccatccagataacccaggataatctccccatcaaaaagtcagacaattggctgggtgtggtggctcatgcctgt<br>aatcccagcactttaggaagccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaat<br>acaaaaattagctgggcatggtggcatgtgcctgtaagtccagctactagcggggctaaggcaggaggatcgcttgaacctgggaggcagaggttgcagt<br>gagccgagattgtaccactgcactccagcctgggcaacagagtgagattccatctcaaaaaaataaaataaaataaaataaaat<font color="green"><u>GAAAGTCAGACAATTA<br></u></font><font color="red">GGGAGCCTGTCTGGCCATGGTGGCCGCGGCTGGTGGTTGGCGCGGCTGCGCTGCGGCCCGGGGCAGTGCGGAGCCAGGACAGTCGCGGCGCTGACGCCCG<br>CGGGCCCCAGCTGCAGATATGAAGCGGAGCCGCTGCCGCGACCGACCGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGC<br>TGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCC<br>TGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGA<br>TGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGGGAGGAGCGCCTCTTCCCAGC<br>CGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGG<br>AGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACC<br>CCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCGCCCCATCTGGGAAGTGAGGAGC<br>GTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGTCAGCCCC<br>CCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCC<br>GGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGAGGTCAGCCC<br>TCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGGGT<br>CAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGC<br>CCTGTCCGGGAGGGAGGTGGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGTTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGG<br>GGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAA<br>GATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGA<br>TCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTT<br>TGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGT<br>CCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAA<br>ACACCCAAGAATTATCAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTCAGACAATTA</u></font>acaacctaattccatctgcagtcttaattcttctttgctagg<br>taacctatcatcttccagattctggagattgaggcatgactttttttttttttgagacaggatctctctctgttgcccaggctggagtgcagtggtgtga<br>tcttggctcactgcaggctcaacctccggggctcaagagatcctcctactgtacctcccaagcagctgggactacaggaacagcccacaccaccacactt<br>ggataacttttgttcattttttgtagagatgaggtctcactatgttgcccagggtggtcttgaattcctggactcatgcaattctcctgcctggcctcct<br>aaagtgctgggattacaggtgtgagccacccagcctatgaat	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3791	1345	NA	intergenic
0	chr1	86680741	86683023	3000043	0	+	H1_F_127; RIP_SVA_chr1_086_01	TGCGCAATTCATAGTGTTTAGG	TCTTCAGCAGATTCTCATTTGG	OTHER	SVA	SVA_F	aaaaacaatgaaaggaacataaaatgacaccagggataaggataattttaaacatgtttctttctacccatgtgttttctaagagtaggttattatttgt<br>ctcaatgttttaataacaagaactaaaaaaaaatgaatcaattgcgcaattcatagtgtttaggtaaaaactgacctattgcttagaagtcattcttaga<br>attaagactaaaatggaattgctcttatgtccctaataaagatgacacaatttaatatcataaagattcttcttaaagacaaatttattcaggccatggt<br>atggctgataatatcacaccgagagctaaagcaaggggccagcctgcaaggcactttcctggagtgctagtttataagaaacatt<font color="green"><u>AAAACATTGTCTTTG<br></u></font><font color="red">GATCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTCCCTCCCCCTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCAT<br>GCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCGAATGCCTGCGATTGCAGGC<br>ACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGG<br>CCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACTT<br>ACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGC<br>CGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGG<br>CGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAAGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCC<br>CATCTGGGATGTGAGGAGCGCCTCTGCCTGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCT<br>CTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCAT<br>CTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGGCCCGGCCAGCCGCCCCATCCGGGAGGG<br>AGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGTGA<br>GGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCTATCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCAC<br>CCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCC<br>GGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAG<br>GGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGAGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCT<br>CTGCCCGGCCAGCCGCCCCGTCCTGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGC<br>GGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCA<br>TTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACT<br>CAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAA<br>GTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACT<br>ATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAA</font><font color="green"><u>AAAACATTGTCTTTG</u></font>at<br>gaattagaaattcagtaccagttgactcagaattttatatgtgacttcatacatatctagtaaaacagaaattgatcttaccaaatgagaatctgctgaa<br>gaaattgtccccttggggactcaggagggaagatggggaggtggatgagggatgaaagactacatattgggtacaatgtacactgcttgagtgatgggta<br>cactaaaatctcagaaatcaccaccaaagaacttacccatgtaaccgaaaaccacctgtaccccaaacactattgaaataaaaataaaaataaattgttt<br>ccttaggtcacagtagagggaaaaatgccacaccttatctcctagttcaatcttttgaagtacatataaataagttttatggt	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2660	465	NA	intergenic
0	chr1	45688657	45689567	3000044	0	+	H1_E_89; RIP_SVA_chr1_045_01	GGAGCTGCTAACGCTAATGAAC	AGCTCATGAGGCACCATTTATT	OTHER	SVA	SVA_E	ctctcaaataaatgtggttatgttatacattattttaatggacactctcgctttatttatttatttatttattttgctgatgacattacttgctgtttat<br>tttatgtttattttagactatggaaatgatgttagacaaaaagcaaatttgagcaattttcctattcaagttcaaaaatgtcgtaaagcagcagagacaa<br>cttgcaacaatgcatttagcccaggagctgctaacgctaatgaacgtacaatgcagtggtggttcaagaagttttgcaaaggagacaagagccttgaaga<br>tgaggagcacagtggctggccattgggagttgataatgaccaaaagagcgcaaacatcgaagctgatcctcttacaactacacaat<font color="green"><u>AAGTTGCCGAAGAA<br></u></font><font color="red">GGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCTG<br>TCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>ACCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGA<br>CAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTATGTGGATAGAAGTGGACATGGGAGA<br>CTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTA<br>ATCTTAAGTACCCAGGGACACAAACACTGCAGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTACTGACCTTCC<br>CTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAATAAATAAATAAATAAATAAATAAATAAA<br>TAAATAAATAA</font><font color="green"><u>AAGTTGCCGAAGAA</u></font>atcaacgtcgacgattctatgttcatttggcatctgaagcaaactggaaaggtgaaaaagttcaataaatggtgc<br>ctcatgagctgactgaaaatcaaaaaaattgttgttttgaagtatcatcttctcttattctacccaacaacaacgaaccatttctcgatcagattgtgat<br>gtgcaacgaaaagtggattttatataattggcaatggccagctcagtagctggaccaagaagcagctccaaggcacttcccaaagccaaagttgcaccaa<br>aaaaaggtcatagtcactggtctgctgccggtctgatccactacagctttttttttttttttttttttttttgagacagggtctcaatctgtcacccaag<br>ctgaagtgcag	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	1187	276	NA	intergenic
0	chr20	52866253	52867342	3000045	0	-	H20_E_91; RIP_SVA_chr20_052_01	GATGAGTGGCAAGTTCATCAAA	AATGACATAAGGCTGCCAACTT	OTHER	SVA	SVA_E	ttgaacaccatggagatgaaagattaaaaaaatgaaaaaaaaaaatctggctacaaactttggtgtctatatggagagctgtctatatggagagctgtct<br>ctcaactcaagtatgttcttgacatgtctagaggtcctgagtttccttatctgagggtgggaatggaggcaggagcacagatggaagggtaggtagaagt<br>atcaatgaggacagctggcatctttgcatgctacggcctctccgtaggacaccaaatttccagttaaagttcttcattggagtgactcatttagtaacac<br>tggtttttaggttcatattgtctgagttcaactcttagctccacctcttactagttgtgtaatcttgatgagtggcaagttcatc<font color="green"><u>AAAAGATTCCCTCTC<br></u></font><font color="red">GAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCTAGCCGCCCTGTCCGGGAGGGAG<br>GTGGGGGGGGTCAGCCCCCCGCCCGACCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCC<br>GGCTGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAG<br>GATGGTCGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGT<br>GGGGAAAAAATTGAGAAATCAGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTG<br>CCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAG<br>ATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGC<br>CGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTC<br>TGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAATAAAAAATAAAAAAATAAAAAAATAAAAATAAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTCC<br>CTCTC</u></font>cttttctgtaaaatggggtaacactactaccttccacacttcattgctgtgcccagttatttgaaagccaatcccacgcttcatgccatttcatc<br>cctgtgtactccaatatacatctctaagcaaaactgacattttcagatataatcatatttccattgtcacactaagtattaataattccattgcattatc<br>taatatccagttcatatttaaatgttttcacctatcttgaaggtgtctttttgcagacagcagatttattacttgaaatatccaatatgacaaaataatt<br>aagttggcagccttatgtcattctccagtagtaagaagaaaatgcagagaaaaaaacctaattctctgaaatccaaaaatatagatgccc	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	1456	363	NA	intergenic
0	chr2	11042072	11044053	3000046	0	-	H2_F_9; RIP_SVA_chr2_010_01	TTTGTCTAGACGGCAAATGATG	GCTGTTCAtGCCCAATAATGTA	OTHER	SVA	SVA_D	cttctatgagaattatacatttcatgatgccatgggggaagggacgtagagcacaaaatctattagacatagaagaagcagcaattttaccttgcgggtt<br>tcttatttaaataaagggtgggggaacagtttatttaggcataatgggaagtagttgtttgagctgcattttctcattaaaaattttttttatttgttga<br>acaataccattttgggctacagaatgctagatttctatggcagtaattaaaaccagtgcctgtgtatctaagtgatttgtctagacggcaaatgatgcaa<br>gctgtaatctattcctttttatgggctaatcagttctgctcagttaaaatttccttgtgttttgctgaattgaataatacctttcatt<font color="green"><u>AAGATTCAGTTC<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCTCCCTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTCATGC<br>TGAGCCAAAGCTGTACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGACTCAGCCTGCCCAGTGCCTGCGATTGCAGGCTC<br>ACGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGATTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCAAGTGATCCGCCAGCCTCGGCC<br>TCCCGAGGTGCCGGGATTGCAGACGGAGTCTCCTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTGC<br>ACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCG<br>CCCATCGTCTGGGTTGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGCCATCACGTCTGGGAAGTAAGGAG<br>CATCTCAGCCCGGCTGCCCATCGTCTGGGATGTGAGGAGCGCCTCTGCCAGGCCGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCTGGCCGCCATCCCA<br>CCTAGGAAGTGAGGAGCACCTCTTCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGTCGCCCATCGTCTGAGATGTGGGGAGCGCCT<br>CTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCACCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCATCTGGGA<br>AGTGAGGAGCGTCTGCGCCCGGCAGCCAGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGTCAGCCCCCAGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGACGCCCCGTCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCAGCCCGGCCAGCCGCCCCGACCGGGAGGGAGGTGGGGGGGTTAG<br>CCCCCCGCCCGGCCAGCCCCCCCATCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCC<br>GGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCAGGATGACAATG<br>GCGGCTTTGTGGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTT<br>CATTTTGTTCTGTACTAAGAAAACTTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCA<br>CTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAAGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTC<br>AAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCA<br>CTATTGTCCTATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAATAAATAAATAAAAAAAA</font><font color="green"><u>AAGATTCAGTTC</u></font>tgtact<br>ccattgaaaatttacatttcattttttgctgtgtacccatcggtatcagggagctgccccgtccccacccccgctccttctcctcatcatccccctcccc<br>tcatcatcccccttccccacctccaccaagaagagctgattgacagaaagacccagctggtctactcctgtctgaataccatggcccctggaagtcaagt<br>gcatgaggcagctgggtgggaggcggtgctggatggaggtgggtagagaaggatgtcaaactgaatcatcaggaaacttcatttttttcaccccagcttc<br>taagcattttttttcttttctatgcctcaattttttcatcagtaaaatggagctaatgactctttccttcctggctataaga	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2544	585	NA	intergenic
0	chr2	41973157	41975865	3000047	0	+	H2_F_56; RIP_SVA_chr2_041_01	GGGTAGGCTAACTGCTACAACG	ACCAAACAGGAAaTACCCTGAA	OTHER	SVA	SVA_F	cacttataagtgaacgctaagctataagtacacaaaggcatacggagtgatataatgaattttggagactgagatgggaaggaagggataggagtgtgag<br>ataaaaaaaaaaactacatattgggtacaacatacactgctcaggtgatgggtgcgctaaaatctcataattcaccactatataattcacccatataacc<br>aaaaaccacttgtactccaaaagctatccaaatttttaaaaatattttaaataaaaaattatcctgcatttgtcttatcctttttgcatatgaactgctt<br>taatagattaagagtatttatttgtaccaattttttatttgttagggtaggctaactgctacaacgaatataccccaagatgtgt<font color="green"><u>AAAAACCTCACATGC<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCGTCCCTCCCTCTCCGTCTCCGTCTCCGTCTCCGTCTCCCTCTCCC<br>CACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAG<br>TGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGACCGGTCTCCAGCCCCTAACCGCGAG<br>TGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATC<br>TCGGCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAG<br>GAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCG<br>CCTCTGCCTCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTG<br>AGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCG<br>CCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCATCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CGGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCAAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCTGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCACCC<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGTCAGCCCCCCGACCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAA<br>CGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAG<br>TAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTG<br>AAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCA<br>TCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTAT<br>CTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAACCTCACATGC</u></font>aattagagtccatttccctctcagataaaaagttcagggtatttcctgtttggttccacagaattgtatggggctt<br>cagaatgatggaggctctgccatcctcaccatatggtattttgtcctagcgtcaatatgttgtaggcaaggaggaaaagggcagatagaattaggtttag<br>gagatttaatggggcagacctgggagggaggcatagctcttcctctcacattccattagctacactgaactttaggagaaactcagaaatgtaatctagc<br>tatatatctcggaaaaagagggaatggattttcatagcatctaagtctttcttcccagaagtcatttaaaattaattattttgaaatcaatttctgacca<br>ttattgggg	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2834	114	NA	intergenic
0	chr2	48781853	48784867	3000048	0	-	H2_F_76; RIP_SVA_chr2_048_01	GTCTCCAAGTCTATGGGGAGTG	CCACGTATGCGTTTCTACTCAA	OTHER	SVA	SVA_F	gcctcagcctgccgagtagctgggattacaggcatgtgccaccaagcccagctaatttttgtatttttggtagagatggggtttctccatattggtcatg<br>ctggtctcgaactcccgacctcaggtgatccacccacctcagcctcccaaagtgctgggattacaggcatgagccaccgcacctgacagatttttaaaat<br>tctttattaaggtcctatatacaaagcagttataaaagattggcattaactttagtaatgtcttagtctcaaaagcaaacttcagcacacaaaaaataat<br>atttaagtctccaagtctatggggagtgcttgcaaaatacttgtgaactttattgaatttcaaagactaccaaaggctttaac<font color="green"><u>AAAAAATTTTGCACTTA<br></u></font><font color="red">GCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAG<br>TGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCC<br>CGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTC<br>TGCCCGGCCGCCATCACATCTAGGAAGTGAGGAGCCTCTCTGCTCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGG<br>ATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGG<br>CAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCATCTGGGAAG<br>TGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGG<br>GGTCAGCCCCCCCGCCCGGGCAGCCGTGCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCC<br>TCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGGCAGCCGTGCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGG<br>GGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGTCAGCGCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCC<br>AGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAG<br>CCGCCCCGTCTGGGAGTTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT<br>GGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGG<br>GGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGG<br>GTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGTTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCAGGAGGGAGGTGGGGGTGTCAGCCCCACGCCCGGCCAGCCGC<br>CTCGTCCGTGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGTGGC<br>CCCGTCCGGTAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGG<br>GGGGTCAGCCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCACCTCCCCGTCTGGGAGGTGTGCCCAACAGCTCAT<br>TGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAAGATTGAGAAATCGGATGGTTGCAGTGTCTGTGTAGA<br>AAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGC<br>TCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAA<br>GAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTT<br>GTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATAAATA<br>AATAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTTTGCACTTA</u></font>aagtttgagtagaaacgcatacgtgggagccaatgactggatgtgccaactgacattttcgaccttag<br>cctatatgtaaatttacagatctctaagtctcaaccttgggtgcttgagcccctggcaggctaacctctttcctcccaactctgagtccaatttaaagaa<br>gcaaaaggccgggcgcaatggctcacgcctgtaatcctagcactttgggaggccgaggcaggcagatcacctgaggtcaggagttcgaaactagcctggc<br>caacgtggtaaaaccccgtctctattaaaaatacaaaaaattagctgggcatggtggtgcacgcctgtaatcccagctagttgggaggctgaggcaggag<br>aactgcttgaaccag	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3152	150	NA	intergenic
0	chr2	114151343	114153611	3000049	0	+	H2_F_129; RIP_SVA_chr2_113_01	TTGCTGACTGCTATCAGGGTTA	TCATGTTTGTGGATGGGATaAA	OTHER	SVA	SVA_F	cgttttagtggaatccagatctctaagaaacagatataaaatatttgttcctatccaactttgattactatatttccaactatgttgctgtctgtaagta<br>gagtctgcatacatgtttctggttcatatatgcctagggttccagagcattacatttccatcaaaatgtagatcccaagaatgccagagagggtcaggca<br>gaggatagaacagagtgattttcagatactgcagtaggaaggtggatccacctcttggctggtacttgtaaccatgaagtgtgggaaagtaacgaccaga<br>ttgagtaaatgaccagaaattcaaaactaagccataacaaatttgtctatttctgcttttgctgactgctatcagggttacatc<font color="green"><u>AAAAACAGTATTGCTG<br></u></font><font color="red">GCCACCGCGCCGGCGAGCGCCGCCAGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCAGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCC<br>CAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGATCCCC<br>TCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCT<br>AGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCC<br>GGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGT<br>GAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCAGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>GCCTGGCCAGCCGTGCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGC<br>CCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGG<br>GAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGA<br>GGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCC<br>CCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGC<br>GGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAA<br>ATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGG<br>CGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAACATGCTGGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACT<br>GCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAA<br>ATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAACAAAAAA</font><font color="green"><u>AAAAACAGTATTGCTG</u></font>agaccagtgttgtgg<br>agctttaacccttatgttttcttctagtaattttacagttcaggccttctatttaaatcttcatttggagttggtattagtatgtggtgtaagttagggg<br>actaactttatttttcctgtggatattcagttttctcaacaccatttgtagaacagactatcctttaaccattgtatgtccttggcacctttgtcaaaaa<br>taagttgactgtgtgtgggtttatttctgggttttccattttgtttagccaatttgtccatttatatgccactaccatgctatttggattacaattgttt<br>tacaatatgtaataaaattaggtagcatgctgtctctagctttgttctttttgctcaagattattttat	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2865	687	NA	intergenic
0	chr2	208474496	208476784	3000050	0	+	H2_E_239; RIP_SVA_chr2_208_01	ATACAGAAGGTACTGGGGAAGC	CATGCTTTTTGCCTTAATTTCA	OTHER	SVA	SVA_E	gtgtatcatagataatcctaaaacaatataacaatcatttaacccaaagtcaatgccctttaaatggaatgtatctttttcattatttggttatgaaata<br>tacagaaggtactggggaagcaacaatggaagaggcagaagcattcttggccctcaaggagcttacactctacagggcaatactaccactgaatgagcaa<br>ttacaagtccaatacaaaaggagcttatatgtaggaagctaacctctcaggcagggatgagatttaaaacttttaatgtcatcctatgcgttgttaagga<br>agcagggaaagcttgggaaagaactgcattaagacatttgagcaagggtaaaacagaaggggaaaacctcagctcttgacttgaaat<font color="green"><u>AGAAAACCTATTC<br></u></font><font color="red">CCTCCCTCTCCCTCTCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGC<br>CATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGG<br>TTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGA<br>TTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCT<br>TGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCTGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGA<br>GGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCA<br>TCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGC<br>CTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTC<br>TGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCTCCCACCTGGCCAGCTGCCCCATCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGGGGTCGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCGTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCC<br>AGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTG<br>GGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCACGATGACAATGGCGGTTTTGTGGAA<br>TAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTA<br>CTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATG<br>GATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGAC<br>ACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTC<br>CTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACCTAT<br>TC</u></font>aagatttcaggtgctttttttttttttttttttttttttttttgagatggagtctcgctcttgtcccccaggctggagtacaatggtgcaatctcagc<br>tcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcctgacaccacgcccggctaattttt<br>gtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccgcctcggcctcccaaagtggtggga<br>ttacaggcatgagccaccgcatccggccagatttcaggtgcttttaaaaagtaactgaaattttatttttacttaattcctttatttat	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3027	627	NA	exon:3UTR:FAM119A:NM_001127395
0	chr2	223760192	223762671	3000051	0	-	H2_E_256; RIP_SVA_chr2_223_01	AATGTGAAGGTCTCCACTGACC	CTCTTTTGTCCTGGCCTGTTAC	OTHER	SVA	SVA_E	acccacatttttcaaaattctcattgattcttatagagttattttcctacaaaatccagaggagttaacatttctgtatgacgaaacacaactttaaaag<br>aatcaaaaggaaaacaagtgtccaggaaaaaatgctgacaaaatatacaaagagcgcctataaattaaaataaaagtcaagcaacacaaggaaaatgggc<br>acagagtatgaacagggaagccaaaaaagaggaaataaaagaggaagcctgagagttaaacactggttttgataatgtgaaggtctccactgaccttaaa<br>cttgaaaagagcttaagtgttaaggaccaaagctcaaatgaagagggttcaagaaagggcagaaagacagtaagtagaaagagctct<font color="green"><u>AAAGAACAAAGTA<br></u></font><font color="red">GCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTCCCTCTCCACGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACTGTACTGCTGCGATCTCGGCTCA<br>CTGCAACCTCCATGCCTGAGTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGTCACCACGCCTGACTGGTTTTCGTTTTTTTTTGGTG<br>GAGACGGGGTTTTGCTGTGTTGGCCGGGCCGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATGGCAGACGGAG<br>TCTCGTTCACTCAGTGCTCAATGGTGCCAAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAA<br>GAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATATGAGGAGCCCCTCTG<br>CCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGTCCGCCATCCCATCTAGGAAGCGAGGAGCGCCACTTCCCCGCCGCCATCCCATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGAGGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCCCGGCC<br>GCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCAGCAGCCACCCCGTCTGGGAAGTGAGG<br>AGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCT<br>GCCCGGCCGCCCCCACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCAGTCCGGGAGGGGGGAGGGGGGTCAGCCCCCTGCCTGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGATGTCGGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCCGCCCGGCCAGCCG<br>CCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCTCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGGGGGAGGGGGAGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGCGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGAGGGGTCAGCAC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGG<br>TTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATT<br>TTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCA<br>GGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCAGCACCACTCCCTAATCTTAAGT<br>ACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTAT<br>TGTCCTATGACCCTGCCAAATCCCCTTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACAAAGTA</u></font>atggtaa<br>caggccaggacaaaagaggttcttttgtttttaacataaatagtagagcttgtctgcagactgatagctatgaaccagcagaggaaagtattatgcagaa<br>gagagccacacctctggaggaggagagagggtgggagaaacagggacacagatgtgcaggaataggagcttgcagaagattttcttctgggtgcttctat<br>tttctcagagtaataagcaaaatcattggatgtgagggaggcagaaaggaaggtattagaaaattaaggagaaagtataaaatagtcatctaggagagtg<br>gcagaatgaatggtcatggaaaaggaatagcaaaggcaggctggagtatgaaataataagaccacagtgttagaacgata	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2645	155	NA	intergenic
0	chr5	32207706	32209763	3000052	0	+	H5_F_9; RIP_SVA_chr5_032_01	TGTCTGCCCTACCGAGTAATTT	GCTCTATTCAGCTGCATTTCCT	OTHER	SVA	SVA_F	gtcaaggtttggtgtggggctgtagaccaggtttctggctcactgttcaaatgggggaggatccatttctgagctcattcgtgcggccattgggaggcct<br>gaggccctcaatggctgtcagccggagacatcactttcatgccacattgacttctccatagggcagctctacaaaatgacagcttccctttctcaaacca<br>agggctccacaaaagggaaagaggtatcacagtcttctgtgatctaatcacttgcgccatgtcctgtttgttggaagcaagtgactaggttcacccatac<br>acaaggagagaagattacacagccatgaaccctgggagccatgttagaggctgtctgccctaccgagtaatttttttcttcctgtt<font color="green"><u>AATTAGCATTTTTG<br></u></font><font color="red">GAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCGCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCC<br>ATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGC<br>CTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCT<br>GGGATGTGAGGAGCGCCTCTGCCCTGCCGAGACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCC<br>TGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGG<br>AAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCA<br>GCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGACCCGTCCGGGAGGGAGG<br>TGGGGGTGTCGGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCTCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GTGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCTGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCGCTCTGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGTGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCTTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGG<br>AAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATT<br>CCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGG<br>TGCAAGATGTGCTTGGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGTG<br>GAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATC<br>CCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAA</font><font color="green"><u>AATTAGCATTTTTG</u></font>ccatcctggtttgttttttctttgatgc<br>agggtcttgctctgttgcccagctggagtgcaggggcgtgatcacagcttactgcagccttgacctcccgggctcaagcaatcctcctgcctcagcctcc<br>tgagtagctggttctgtaggcatgcaccactttgcccagctattttttaaattttttgtagagatgagatctccctgtgttgcccagactggtctcaaac<br>tcccgggtcaggtgatcctcctcccttgacctctgaaagttctgggattacaggtgtgagccaccacgcctggtctccatcctgttgtaataaaatgtta<br>taataaaaagaaaccccatctctactaaaaatacatacgtggaggtatgtgttcaggt	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2696	620	NA	intergenic
0	chr5	176387599	176390173	3000053	0	+	H5_F_171; RIP_SVA_chr5_176_01	CATGAAAGCATGGCAGAAATAA	TAACTGGTTTTTGGCATCACTG	OTHER	SVA	SVA_F	atagttggtcaaaatcgtagcgctgagacttgcctgactctaaaatccacacgctaaaaactattatattgcttactcagatgatcctcttcctaatcat<br>ttcaatgtagaatcccaagaacgtcttcatttcaatacattattttaatttagaaatttatacctcaatggcagtaatctgaacataaagtgaggttctt<br>ccagaatatgaacacaggatagcaaaataagcaaataaaatttagactacccaaatgtaatcaaggtgaacatgaaagcatggcagaaataaaaatttaa<br>ggaagctatggcctaatcaagacatcttcttcctggagaaataatatgttaataaggaagggatggtttgcattgaatctt<font color="green"><u>AAAAAAAAAAAAAAATTCA<br></u></font><font color="red">GCCCTCTCTCCCTCTCCCCCTCCCCCTCCCCCTCCGTCTCCGTCTCCGTCTCCGTCTCCGTCTCCGTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAA<br>GCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCACGCGCCGCCA<br>CGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGT<br>GCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTCCACCTCCCAG<br>CCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTC<br>TGGGATGTGAGGAGCCCCTCTGCTCGGCTGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTC<br>CCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCACCGCCCCATCTGGGATG<br>TGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAA<br>CCACCCCGTCTGAGAAGTGAGGAGCCCCCCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGCCACCCCATCTGGGAAGTGA<br>GGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGT<br>CAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCGGTCCGGGAGGTGAGGGGCGCCTCTG<br>CCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCC<br>CCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GATCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGC<br>TGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCGCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGACCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGCCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGG<br>AATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTG<br>CACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAA<br>TGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGG<br>ACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCAT<br>GACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAAAATTCA</u></font>aagaat<br>tattatcaaagggtatttttaatacttaaaagtgaaaatggggctgggcagagtggctcacatctgtaaccccagaactttgggaggccaaggggggcgg<br>atgccttgaggccagcagttcaagaccagactggccaacatcgtgaaaccccatctctacaaaaaatacaaaaattagccaggcatggtggtgcatgcct<br>gtgaccccagctactcaggaggctgaagcaggagaatcacttgaacccgggaggtggaggttgcagtgagctgagatcgtgtcactgcactccagcctgg<br>gtgacagagtgaaactccatctttaaaaaaaaaaaaaaaaaagtgaaaatgaatagataaatcatctggtcatca	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3553	950	NA	intron:UIMC1:NM:016290:6/15
0	chr5	43086412	43089296	3000054	0	-	H5_E_27; RIP_SVA_chr5_043_01	AATTGAGGTTAGATAGACCTGTTCA	GCATGAGGCAAACTCTCTTTTT	OTHER	SVA	SVA_E	gtaggtgcacacaaccataattgggtaattaaatatttttttttgtggagacgggatctcagtttattacccaagctggtcttgaactcctggactcaag<br>ggatcctcctgcctcggcctcccaaagtgctgggattacaggtgtgagctgccacacctagcttagtttagatgtttgttttaaagttttaaatttttaa<br>tagttaataacagataaaactaaatttaaaaaattataaaaggttataaaaggtttatacaaatcttatcttctgtggtcaaaactaattgaggttagat<br>agacctgttcataattttactaaaattagctttagcattaataatatacggatatagagatacaaattttttaacaaaatttccatat<font color="green"><u>AAGAGATAACAA<br></u></font><font color="red">GCTCTCTAACAAGCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCGTCTCCCTCTCCGTCTCCCTCTCCCCGGTCTCCTTCCACGGTCTCCCTCT<br>GATGCCGAGCCGAAGCTGGACTGTACTGCTGCGATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTGAGTGCCTGCGATTGCA<br>GGCGCGCGTCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTG<br>ATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCAAGGCTGGAGTGCAGTGGCGTGATCTC<br>GGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCTGCCTGGCCGCCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATC<br>TAGGAAGCGAGGAGCGCCACTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGAGGTGGGGAGCACCTCT<br>GCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGTCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGTCGCCCCGTC<br>CAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCCGGCCAGCCGCCCAGTC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCTCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCC<br>CCCGCCCAGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGAGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCG<br>CCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TGGAGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCT<br>GGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCACTGGGGATGGGCCATGATGACAATGGCGGTTTTGT<br>GGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTC<br>TGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTA<br>AATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAG<br>GGACACAAACACTGCGGAAGGCAGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCT<br>ATGACCCTGCCAAATCCCCTTCTGCGAGAAACACCCAAGAATGATCAATTAAAAAAAAAAAAAAACAAAACAAATATTTACGTATGATAATGAGAAGAAC<br>ACTGTCCTAGATGGCTGAAATGCTAATAGTCTTTAATTCACTATTTTCTTATTCTGACTGTTGCAAAGATTTGTAGTTTTATTGATGATTCTCACTCATG<br>TTCTAAAATAGGAGTTGGCAAACTATTGGCTGCCTGTGTTTATAAATAAAGTTTTCCTAGAACACAACAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATAACAA</u></font>atg<br>caagattttttgttcaccttttaaatacattgcaaaagaaaaaagagagtttgcctcatgctgtctttgtctttttgactgtttagagaactgagtctcc<br>tctctatcaaagagtaagggtttttgctttttgaaatctttgaattatcactttggctaaatgagtaacttatttgtgtaagataaggattacttatgtg<br>taattctattttgatccagggtttgaaacctttcttattttcctatcaagtgttttaagcctttaatagttgacaaacttctcaaaatcaaattttatat<br>tctaaaattaagtctttttgacctgaaactaacttttaattttggtatataaaaatcatatggaaaacactgtcaaatagaagtg	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3075	180	NA	intergenic
0	chr6	5037249	5039168	3000055	0	-	H6_E_1; RIP_SVA_chr6_004_01	TCCGGTAAGCTTCATACCAGTT	ATTCAAATCCCTCTGCAAAGAA	OTHER	SVA	SVA_E	acttaaaacagtgcctggaatatagttggttctcaataaatattaattgagtaaatgccatgttacatattaccttgctttgaaattctaagacaaaaca<br>atactaatagcttttaagtaatggtggcttccggtaagcttcataccagtttctcttatagtgttacatatttatttttaaagcaacaactcatttattt<br>agattaatgaaaaaaaaatgaaaataaatactgtattgtgggcccacatttcagtgttccagtgatatcaggcaaccttaaattttagccataaataatt<br>ttgataaaagaaacatgtgtaaactacccataaaccaggtgtggccgttcatccagactttgcaggattaacccaaacatttt<font color="green"><u>AAAAATACAAGCTAAAG<br></u></font><font color="red">CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCCCTCCACGGTCTCCTTCCGCGGTCTCCCTCTGATGCCGAGCCAAGGCTG<br>GACGGTGCTGCTGCCATCTCGGCTCGCTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGGGTGCCTGCGCACACCGCCACGCCTGACTGGTTT<br>TCGGTTTTTTTTTGGTGGAGACGGGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACTGCCAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGC<br>CGGGATTGCGGACGGAGTCTCGTTCACTCGGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCC<br>GCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGGGGAGCGTCTCTGCCTGGCCCCCCATCGTCTG<br>GGATACGGGGAGCCTCTCTGCCTGGCTGCCCAGTCTGGAAGGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCC<br>CGCCGCCATCCCATCTAGGAAGTGAGGAGCATCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCCCATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCTCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCC<br>GCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGG<br>AGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGCGGTCAGCCCCCCG<br>CCCGGCCAGCGGCCCCGTCCGGGAGGTGAGGGGCGCCTTTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGG<br>GAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCGGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGGACCCCGTCT<br>GGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCG<br>GATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTG<br>TGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATG<br>CTTGAAGGCAGCATGCTCGTTAAGAGTCATCGCCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGA<br>AAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATG<br>ATCAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAGCTAAAG</u></font>agacaagacttctcaatactggggcagtgatgtgcttcagagacctagataacaggggacttt<br>gaagggcaccctcctaggaaggacctcctaacttctcaggcatcagtttctgcttctgttgactcagaaaggagctcccagtggtataacttgagcgtat<br>cccgtgcccgcaggtctcctgagaaagtggactgtgtcttctcactgtccgggcccaaggagaagatgttgggctgaagggaagctcatttagagggagg<br>cctttatctcaggagagaaattgatgcaagatctcagtccagcaggaaggagagtgactatctgaagcaatcggatgctttctttgcagagggatttgaa<br>tttgaaactgtagagaccat	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2572	640	NA	intergenic
0	chr6	125708766	125711352	3000056	0	-	H6_E_146; RIP_SVA_chr6_125_01	TTAACAGCACGTAGCACAGTGA	TTTCTCCCTTCCCATTTTTGTA	OTHER	SVA	SVA_E	taataataatgccttctcatcagaaataatggaaatagaataatgaattaccatttttttcttaaatgaaaaaaaaaaaagactgtgaacctaacattct<br>gtaaccagttaaaatatccaccaaaaatgaagttgaaataaagagattatcagactaaccagatctgagagaatacattgccaggagacttcaactacaa<br>gaagtgtataaagaaggtcttcaggtgaaggataatgatatatgaaaacttgattttacacaaaggaataaagggtgccagatacggttagtatacaggc<br>aaatctaaaattctttttcatactgtaatttcttcaaaaattaattgattctttaaagcagaaataacaaaatatcatggagtt<font color="green"><u>TAAAATATACATAGCA<br></u></font><font color="red">GCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCC<br>CTCTCATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCGCTGCGGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGAT<br>TGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGA<br>GTGATCCGCCAGCCTCGGCCTCCCGAGGTGCTGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGAT<br>CTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCGGCCACCCCGTCTGGGAAGTGAGGA<br>GCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCC<br>ATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACC<br>TCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAG<br>AAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCC<br>CGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCCGGGGGGGGGGGGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGG<br>GCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGG<br>CCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGG<br>AGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAC<br>TGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCGGTCTGGGAGG<br>TGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGT<br>TGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCT<br>TATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAA<br>GGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCA<br>GAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAAT<br>AAAAATAAAAAATAAAAAATAAATAAATAAATAAATAAATAAATAAAGAAAAAAAAAATAAATAAATAAAAAAAAAGAAAAAAAAAA</font><font color="green"><u>TAAAATATACATA<br>GCA</u></font>aacaataatacaaaaatgggaagggagaaaatggaagtatactattgtaagattcttaccatatacataaattagtatgatactgggggtagactct<br>gatagattaaaaattcatgttgtaaattgtaaagcaactgctaataaaatgaaaacaaatctaacagaagacaagaaataactaagatcagagcagaact<br>gaaggagacagagacacgaaaaaccctcccaaaaatcaatgaatccaggagctggttttttgaaaagctcaacaaaatagatagaccataaaaatcctag<br>aagaaaacctgggcaataccattcaggacatgggcatgggcaaagacttcatgtctaaaacaccaaaagcatggcaacaaaagccag	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3196	580	NA	intergenic
0	chr7	25057462	25059853	3000057	0	+	H7_F_35; RIP_SVA_chr7_024_01	TTTAGGCCCAAATATGCAAAA	ATCAATgTCTTCATCTGCTTGG	OTHER	SVA	SVA_F	tacatgaatcaaagagctaaatgtaaagaagaaaaatgaaatgaaataaaaaacaaaataaaaataaaaagccacaacaattagaagaaaatatattgtt<br>tccaacagctagataagaaaagactttttaaacctaaagtaaatgcaaaaaaagtcacaaaaaatatgattggacaatcttaatagctattataaatagt<br>tataaggcaaacaagttacaaaaaatatttaggcccaaatatgcaaaatttttcataatatagaaacatttaatagtaatcaataacaaaaacttatttt<br>ataggaaacaagtactttcatatcctgttggcagaactgtaaatttattcagccttcttggaaagctaattaggaatatgcat<font color="green"><u>AAGAAATATATAAAGTC<br></u></font><font color="red">GGCGACCGACCGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGC<br>CCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTT<br>TGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCGATCACATCTAGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCG<br>ACCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCG<br>GGAGGGAGGTGGGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTAGGGGGGTCAGCC<br>CCCCACCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGAGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCAGGAGGGAGGTGGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCG<br>TCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGT<br>CGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGTGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGGGT<br>CGGCCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTGGTCAGCCCCCCCGCCCAGCCAGC<br>CGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGG<br>CGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCGCCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACAGGCCA<br>GGATGACAATGGCGGCTTTGCGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAATAGACAT<br>GGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATG<br>TGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTATTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAA<br>TCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGA<br>CCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAA</font><font color="green"><u>AAGAAATA<br>TATAAAGTC</u></font>tatgttctttgacccactaattccatctacatgactctatcttaaggtgataatgataaaataaggaaagaagttatgacagtatacaaaa<br>ctgtgtataaaactatgtacatacaatataatcgaaactattctaaatacacttagaaaaaaaaaagactggaaggaaatataccacgaaagattgttca<br>tccaacaagcttttatcgttcagatgggctcaacatttgggtctcccgcaaattcctgtggtgaatctctaacccccaacgtgatggtattagtgggtga<br>ggcctttgcaaagtaatcaagtttagatgtggtcctgagggtgaagccctcatgatagaattagtacccctgtaagagatgaaagctctctc	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3164	760	NA	intergenic
0	chr7	138296457	138297208	3000058	0	+	H7_F_148; RIP_SVA_chr7_137_01	CATGCTTCAAGAGAACATCAGG	TCTGGTTGCTTGCAGAGAGTAA	OTHER	SVA	SVA_F	aggttgtagtgggctgagatcgcaccattgcactccagcctaggcgacagagcaagactctgtctcaaaaacccccaaccccaaaacaaaacaaaacaaa<br>acaaaacaaaacaaaaaccaaaccaatccttacccctttaactagtgcccagctctgttgatctttgacaacgtacagtttctcaataagttcatggctt<br>attggaaatcacttctgaaaaaattaaatggatgtaatttgattcccattaacttgtgaagttctctgtcatcttacgagctgattttttttccccatgc<br>ttcaagagaacatcaggcatttatataggacaaaaagatcatctttcggctgtaaccattaaattagggtttttttgtgaccctt<font color="green"><u>GAAAGATAAGACTTT<br></u></font><font color="red">GGTTAAAAGATTGAAAATTAAAGCTAGATAGGAGGAATAAGTTCTAATGCTCTATACCATTATGGTATGACAATAGTTAATAATATATAGCTTCGACAAC<br>CTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTG<br>AGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAGGATTGGGAAATCGGATGGTTGCCGGGTCTGTGTAGAAA<br>GAGGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTC<br>TCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGATTGAAGGCAGCATGCTCGTTAAGA<br>GTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGT<br>TTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAA<br>AAAAAAAAAAAATAAAATAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGATAAGACTTT</u></font>atctttcatccttatccaagccagacttaattt<br>tttttttttttttttggtgagagagagaaagtctcgctctatcgcccaggctggagtatagtggtgtgatcttagctcactgcacctccgcctcccaggt<br>tctaagggattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccaccatgcccagctaatattgtatttttagtagaaactggttttc<br>accatgttggccaggctggtctcgaactcctgacctcagatgatcaatcagcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcctg<br>gccagaaatgtaaattttttacgcagtcaggtttaccatgttttcctatatc	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	1401	630	NA	intron:SVOPL:NM:001139456:13/15
0	chr7	20707289	20709366	3000059	0	+	H7_E_27; RIP_SVA_chr7_020_01	GTGCACAGAAGGATACATGGAA	GCCTATGCTGATACCACTCCTC	OTHER	SVA	SVA_E	atgacacagatgaaatgcttgataagtaaataaatatgagaagagatatatattaaaacacctgtgaagtgaatcccctgtgaagaaaagaaggtctcta<br>acaatataaacctgtatcaggaaaccctgtgattctgattctgtgcacagaaggatacatggaattctcagaccttttctagttgcaaccttttaattgt<br>ttgactttatattctgtcctctcaaattctccttagactgtgacgtgttaatgctctcttttatattttctaattaaattccatacacattaatttgaga<br>actgttggagagtattgtgaaatcattgagctaatgggtcacatcacgtggcttcatgaataagatttgagatctgtttgcttttg<font color="green"><u>GAAAATAACATTCG<br></u></font><font color="red">CCTCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCTCTGCCTCTGCCTCTGCCTCGTCTCCCTCTGA<br>TGCCGAGCCAAACCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGG<br>CGCACGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTTGCTCTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGAT<br>CCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGC<br>TCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTTTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCTGCCTGGCCCCCCATCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCACAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATC<br>TAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCT<br>GCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAG<br>CGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAATGAGGAGCGTCTCCGCCCGG<br>CAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGACTCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>GCCCAGCCGGCCGCCCCGTCCGGGAGGTGTGGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGG<br>GAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGATGGTGGGGGGGGTCAGCCCCCCACCCGGCCAGCTGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGG<br>CGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTT<br>CATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCA<br>CTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTC<br>AAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAACATTCG</u></font>taactttg<br>aggaaacagaataaatagagatttattaaataaatatgagccagtaggctaggtgcctgagtgtttttgccttcgcggttgtcaggtttctaatacatac<br>caacccaacaacagtttctgggactctcttttaaagggctgtaggcaagtcccaggtctccaagacccagaatagaattcaaacttgaagtgtgaaagag<br>aggagtggtatcagcataggctgaatatcttacctgtaaaaaggaagacaaatcagacgaactcaaattgagatattctacaaaacatctaaccagtgtt<br>ctttaaaactatcaagtttatcaaaaacaaggacaatctgagagactgtaacagccaagaggagcctaaggcgacatg	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2579	480	NA	intron:ABCB5:NM:178559:5/19
0	chr7	65857660	65860104	3000060	0	-	H7_E_82; RIP_SVA_chr7_065_01	TTCTGGAAATACCATCTTTGGA	ACAGAGGATTGGCGTAATGACT	OTHER	SVA	SVA_E	tactgggctcaagcagtcctcccacctcagcctctgaaagtgctggaattataagcagacagccaccatgcctgaaaacttgacaatttacatcaagtgt<br>aataagaatgctcatgccctgtgactcacagtaatctcacttctggaaataccatctttggatataattcaacctaaacaaaaggtcatatgtacacagt<br>gaaaatccggatgtaatttttttctttttaaaaacatatggaatgattcacaaatttgcatgtcattcttgcacagaggccatgccaatctatcgttcca<br>actttagtatatgtgctactgaagcaaacatgagtaatttaagataaagtggttaagtggaataaggaagagttatggggaatt<font color="green"><u>TAAAAATTTATGGTAT<br></u></font><font color="red">ACTCCCTCTCCCTCTCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCT<br>GCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTC<br>GTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGG<br>GATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGC<br>CTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCTGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATAT<br>GAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGCCTCTTCCCCGCCTCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCGCGGCTGC<br>CCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGC<br>GTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCG<br>TCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGT<br>GAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGTGGGGGGTCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCTGCCCCTACTGGGAAGTGAGGACCCCTCT<br>GCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCTGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCG<br>GCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTA<br>CTGGAAAGTGAGGAGCTCCTCTGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGCGGGCGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGAGGGG<br>GTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTAGGGGGGACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCGCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCT<br>TCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGAT<br>GACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGA<br>GACTTTTCATTTTGCTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCT<br>GCGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTGGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCC<br>TAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTT<br>CCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAATAAAATAAAATAAAATAAAATA<br>AAAAGAAATCCAATTGCTGGAAAAAAAAAAAATAAAAAAAAAAAA</font><font color="green"><u>TAAAAATTTATGGTAT</u></font>ttataggcacctagtaacggctcagtaaatattagctgc<br>tacttttattatttttatggtaattccactcaattaaaaactgtcattaaaaattaccattgtcatggaacataatgtatcctacagtataattgtaaaa<br>acagatacaatttgtcccttggtatatgggggggattagttccagctcccccatttctgtgtataccaaaatccacccatacccactgcagcctagactt<br>ttcaggctcaagggatcttcccaccccagactccaaagtagccggaactataggtgggcaccaccaccacatctggctaatttaaaaaaattttttggta<br>gacaacagggtctcactatgttgcccaggctggtctccaactcct	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3250	800	NA	intron:NCRNA00174:NR:026873:3/5
0	chr7	152281704	152284305	3000061	0	-	H7_E_171; RIP_SVA_chr7_151_01	GAATAGAAGGGTGCTTCCTCAA	TTGATTTCtTGCAGCAATGTTC	OTHER	SVA	SVA_E	tcaacctgaaaagggcatctatgaaaaacatacaactgtcatcatacttcacagtaagagagtgaatgctttcccactgaggtcaggaacaaggcaagga<br>tgcccactctcaccacttctattcaacagtgccctggatgctccaatggagcaataaggcctaaaaaataaatcaataaataaaagtaaggaagtcataa<br>aacaagggaaaaagtaaaactatctctactcacagataacataatcagctgtgtggaaaatctgatgaatctacaaaaaggctaattagcaagagtggag<br>gattcaatatcagtatacaaaaacaactatttctacattcaaacaatgaacaattggaatttgaaattttaaaaataacataatagaat<font color="green"><u>TAAAACATGTG<br></u></font><font color="red">GGGTCTCCCTCTGATGCCGAGCCGAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTG<br>CCTGCGATTGCGGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCT<br>AGCCGCGAGTGATCCGCCGGCCTCGGCCTCCCGAGGTGCCGGGATTGCGGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGT<br>GGCGTGATCTTGGCTCGCTGCAACCACCTCCCAGCCACCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGA<br>AGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCC<br>GCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTTTGAGATGTGG<br>GGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTC<br>CGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGGCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCTGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGA<br>GGTGGGGGGATCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGC<br>CCGGCCAGCCACCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGTTCGGCCCAGCCGCCCCTTCCGGGAGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGC<br>CGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAG<br>GTGGGGGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>TGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCTCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTG<br>TGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTT<br>CTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGAACACTCAGGGTT<br>AAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCA<br>GGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTA<br>TTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAATAAATTAAAAAAAAAAATAAATAAATAAAA<br>AA</font><font color="green"><u>TAAAACATGTG</u></font>aaacacttaggcataaatctgacaaaggatgaacaaaggatatacactgaaaactaatagaacattgctgcaagaaatcaaaggcct<br>aaataaatggagaaatatatatattttttattcagttttttatttttattttttcctttatttttgtagagacagtgttgcctaggctggtctcgaactc<br>ctggcctccagtgatcctcctgcctcagcctcccaaagtgctgggattacaggtatgagccaccatgcccagacaagaaatatatttattcatcaattag<br>aagactcaatggccaggcacagtggctcatgcctgtaatcctagcactttgggagggtgacgtgggtggatcacccaaggtcaggagttcaagaccagcc<br>tg	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3112	500	NA	intergenic
0	chr8	43033738	43036379	3000062	0	-	H8_E_35; RIP_SVA_chr8_043_01	TTGTGTCCTCTTCTGCTAACGA	CAAGAGCGATTGAAGGTTTTCT	OTHER	SVA	SVA_E	acaaaccctaaaatgaatcctactggaagcagtggctccctttttggagatccaccaagtccacattcatatgaaacaccatctagaagtgacctccacc<br>tcttgctagtgcctattaaagtacatattgcctgagggctccatttggccattgtctagatgtttgtgtcctcttctgctaacgacagttgcaaggccct<br>tgaggacagtgactagtgccctcccgactctgatactcattcaaagcagagggctcacaagccttccctcagctctgctgtccctgcgcaccactaaact<br>aatgacaaagatattactccttccagaaacccagctgccatacaagtgccagtgaaggtggattcgtgaactgccgcacactatc<font color="green"><u>GAAAGCTGATGAAAT<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTC<br>TCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGC<br>CATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGG<br>TTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGA<br>TTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCT<br>TGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGA<br>GGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCA<br>TCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGTGC<br>CTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTC<br>TGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAATGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGCGGTGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGT<br>CTGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGC<br>CCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGT<br>CCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGTCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGTGGGGGG<br>GGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCG<br>CCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGG<br>AGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCC<br>CCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCT<br>GGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCG<br>GATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTG<br>TGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAACAGATG<br>CTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCAACACCCAAGAATGATCAA<br>TAAAAAATAAATAAATAAATTTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGCTGATGAAAT</u></font>cacattagcagggggcaaagttggagaccaaggcggcctggtc<br>tggtccctgctgtgcctctcactacactcagataatccagagaaaaccttcaatcgctcttggcctcagacttttcctctgcacaagagaagggtttgag<br>tagtctcagaggctcctcccaggtctaaaattcaaaaataataataataatgctcacagttagacaaccattgtatatactttcctaatgattattctat<br>ttgcaggcacctgagatggaggaattgcatttctctcaaattacaacatatagtttccatatttcaacctgaatatatataacagagggaaaaagtactt<br>acatggaccaaggcaataattgggattcacaatgataattcc	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2999	350	NA	intron:HGSNAT:NM:152419:10/18
0	chr8	52446038	52448303	3000063	0	+	H8_E_45; RIP_SVA_chr8_052_01	CCACAACTCTGGCTTAATGTGA	CAGTAAAAGAGAGCGAATGCAG	OTHER	SVA	SVA_E	caacttctgaatcagaatcttcttttaaaaaatatcaccaagtattcatatgctgtttatttatttatatttatttacttttttattttttgaggcagag<br>tcttgccctgtcacccaggctggagcacagtggcgcaatctcagctcactgcaacctctgcctcctgggttcaagtgattctcctgccttagcctccaga<br>gtagctaggatcacaggcatgcaccaccacgcctggctaatttttgtatttttagtagacacagggtttcaccatgttggccaggctggtcttgaactcc<br>tgacctcaggtgatccacctgcttcggcctcccaaaatgttgggattacagtcatgagccactgtgcccagcctcatacactgtt<font color="green"><u>TAAAGTTTGAGAAGA<br></u></font><font color="red">CCTCTCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCT<br>CACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGGACGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGG<br>GGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTT<br>CACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCTAAAGTGC<br>CAAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATACGAGGAGCCTCTCTGCCTG<br>GCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTG<br>AGGCGTGTCTCTGCCCGGCCGCCCATGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCACAAC<br>CCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTAAGGAAACCCTCCGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCC<br>CTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTACGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGCCAGGC<br>CAGCCGCCCAGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGA<br>GGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGAGGTGGGGGGATCAGCCCCCACCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGG<br>GGGGGTCAGCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGATCAGCCCCCACTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCC<br>CGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCTCTCTGCCCGGCCAGGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGG<br>CGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAA<br>AATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACAC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCA<br>AATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAATAAATAAATAAATAAATAAAAA</font><font color="green"><u>TAAAGTTTGAGAAGA</u></font>actggtatggacttctctt<br>ttcttctttctttttctcctttctcccatctttcctctcttattttccttaaaaagaaaagaatattccttagtccttatagaatctcacaagacaggta<br>tagtggagatttgctcttgcccccctccctgcattcgctctcttttactgtgactacagttcttaccacgtttccagcttctgtgatctgtgtaaagctg<br>accccagccctggacttgggggatggaacaagtgattaagttcagtgcaaccagagcatgtggacccctggccatggtgatcgggccagcaacaggcacc<br>tgaccatcccagtcagtccactcagggctacaccctctcgggacctgaaattttcctggatatttg	UCSC	<UL><LI>Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (Submitted) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology<a href="http://batzerlab.lsu.edu/pub8.htm">PMID: Submitted168</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2998	710	NA	intron:PXDNL:NM:144651:4/23
0	chr11	9104551	9104552	3000064	0	+	1104685630812	CTCAAGTACCCAGGGACACAA	CCATGCATTTCCCTTATTCCT	OTHER	SVA	SVA_D	aaatggtatattcatacaatggactactattaaacgataaaaatgaatgaaatgctgatataagctaccacatggacaaacctcaaaagcattttgctaa<br>gtgaaagaatccaacacaaaagaccgcatattgtatgattccacttacgtgaaatgtccagaaaaggcaaatatacagatacagaaagtagattactggt<br>tgcttgaggctgggactgggaatgaggattagctgtacaagaacacggggaatcttactgagatgaggaaaatgtttgtattgtgatggttgcacaattc<br>agctgatttactaaaaatcactgacttgcacaattaaaattggtgaatattatagtatgttaattacacctcagtaaagttgtt<font color="green"><u>AAAGTTGCAACTTTTT<br></u></font><font color="red">GCTCCCCCTCCCTCTCCCCTCTCCCATCTCCACTCTTCCTCTCCCCTCTTCCCTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCCGAGCCGA<br>AGCTGGACTGTACTGCTGCCATCTCGGCTCACTCCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCC<br>ACGCCTGACTGGTTTTCATATTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCAGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTTG<br>GCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTGGTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTGGGCTCGCTACAACCT<br>CCACTTCCCAGCCGCTTGCCTTGGCCTCCCAAAGTACCGAGATTGCAGCCTCTGCCCGGCCACCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCCTGGC<br>CGCCCATCGTCTGGGACGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCAGCGCCATCCCATCTAGGAAGTGAGGA<br>GCGCCTCTTCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCTCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCTGCCGCCCC<br>GGCTGGGATGTGAGGAGCGCCTCTACCCGGCTGCGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAGGAGACCCTCCGCCT<br>GGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCCGGCAGCCGCCCCGTCCGGGA<br>GGTGAGGGGCGTCTCTGCCCCGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTCCCGGCCAGCCGCCCCG<br>CCTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCAACCCGTCCGGGAGGGAGGTGGCGGGGTCAGCCCCCCGCCCAGCCAGCCGACCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCTCGTCCGGGAAGGAGGTGGGGCGGTCA<br>GCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCCGGCCAGCAGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCTAGCCAACCCTTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCTGCCTC<br>ATCCGGGAAGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGACCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGA<br>GCCCGTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAGCAGCTCATTGAGAACGGGCCATGATGACAATGGTGGTTTTGTGGAGTAGAAAGGGGG<br>GAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAGAGAGGTAGACATGGGAGACTTTTCATTTTGCTCTGTACTAAGAAAAAT<br>TCTTATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATG<br>TGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGC<br>AGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGC<br>GAGAAACACCCAAGAATGAACAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTTGCAACTTTTT</u></font>ctgaaatctaaaattatacatttatctgcttatta<br>gtgcaaaataaatatagaaaggtaaaaccagaaactacagagattggtgacccacagggcacggggaaagggtggaaagaatgaatacaattaattgtat<br>acatacaattaatacatgtttaaggaataagggaaatgcatggaaggaggggatggaagtgaataaaagtggaatacgaaaagaaacaaatgaacctaat<br>gtattataaactaatagtataaccatactgaagaggatggggaaggaaaatattgacctaaataacactatgaaaaacaacaccttgcttggatgcttta<br>aggctaaaaacaaaatagctgtatgctatactctagtaaatattgtact	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:SCUBE2:NM:020974:2/22
0	chr11	66162115	66162116	3000065	0	-	1104685201673	NA	NA	OTHER	SVA	SVA_E	acagcctcccaaatagctgagaccacaggcgtgcaccaccacacccagctaattgttttacttttcgtagagaggggtctcactatgttgcttagggtgg<br>tttcaaactcctggcctcaagcaagcctcctgcctctacctcccaaactgctggaatcacaggcatgaaccaccatgcccagcctcctcttgactgtttg<br>taatccttcgtctaccccctgcccagccctatctctaagcaaccactcacctgccttttgtcactatagattattttgcattttctagtattttatatga<br>attggattatacaatgcatactattttttttgaggggggaatctgcttctttcagcattagtatttcgtgatccacccatgctgtgtatgtatca<font color="green"><u>NNNNN<br></u></font><font color="red">TCATTACTTTTTTTTTTTTATTTTTTTTTTATTTTTTATTTTTTATTTTTTATTTTTATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAG<br>GGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCCGCAGTGTTT<br>GTGTCCCTGGGTACTTAAGATTAGGGAGTGGTGATGACTCTTAACGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAA<br>TCCATTTAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGATAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTTTCTT<br>AGTACAGAACAAAATGAAAAGTCTCCCATGTCTACTTCTATCCACACAGACCCCGCAACCATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTC<br>TATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACCTCCCAGACGGGGTCGTGGCCGGGCAGAGGGGCTCCTCACTT<br>CCCAGTAGGGGCGGCCCGGCAGAAGTGCCCCTCACCTCCCAGATGGGGCGGCTGGCCGGGAGGGGGGCTGACCCCCCCACCGCCCTCCCGGACGGGGCGG<br>CTGGCCAGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCTGGATAGGGCGGCTGGCCGGGCGGGGGGCTGTTC<br>CCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGG<br>GCGGCTGGCCAGGCAGGGGGCTGATCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCCACCTCCCTCCCGGACGGGG<br>CGGCTGGCCGGGCAGAGGGGTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCAGGCAGGGGGCTGA<br>TCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGGGGGCTGACC<br>CCCCCTCCCCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGATGGGGCGGCTGGCCAGGCGGGGGGCCCACCCC<br>CCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGAGCCCCTCACCTCCCGGACGGGG<br>CGGCTGGCCGGGCGGGGGGCTGACCCCCCCCACCTCCCTCCCGGACGGGGTGGCTGCCGGGCGGAGACGCTCCTCACTTCCCAGACGGGGTGGTTGCCAG<br>ACGGAGGGGCTCCTCACTTCTCAGACGGGGCGGTTGCCAGGCAGGGGGTTTCCTCACTTCTCAGACGGAGCGGCCGGGCAGAGACACTCCTCACCTCCCA<br>GACAGGGTTGCGGCCCAGCAGAGGCGCTCCTCACATCCCAGACAGGGCGGTGGGGCAGAGGTGCTCCCCACATCTCAGACGATGGGCGGCCGGGCAGAGA<br>CGCTCCTCACTTCCTAGATGGGATGGCGGCGGGGAAGAGGCGCTTCTCGCTTCCTAGATGGGATGGCGGCCGGGCAGAGACGCTCCTCACTTTCCACACT<br>GGGCAGCCAGGCAGAGGGGCTCCTCATATCCCAGACGATGGGTGGCCAAGCAGAGACGCTCCTCACTTCCCAGACGGGGTGGCGGCCGGGCAGAGGCTGC<br>AATCTCGGCTCTTTGGGAGGCCAAGGCAGGCGGCTGGGAGGTGGTTGTAGCGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCACCATTGAGCACTG<br>AGTGAACGAGACTCCATCTGCAATCCCGGCACCTCGGGAGGCCGAGGCTGGCGGATCACTCGCGGTTAGGAGCTGGAGACCAGCCCGGCCAACACAGCGA<br>AACCCCATCTCCACCAAAAAAAAACGAAAACCAGTCAGGCGTGGCGGCGCGCGCCTGCAATCGCAGGCACTCGGCAGGCTGAGGCAGGAGAATCAGGCAG<br>GGAGGTTGCAGTGAGCCGAGATGGCAGCAGTACCGTCCAGCTTTGGCTCGGCATGAGAGGGAGAGGGAGACGGGAGAGGGAGAGGGAGACGGGAGAGGGA<br>GAGGGAGACGGGAGAGGGAGAGGGAGACGGGAGAGGGAGAGGGTGATGGGAGAGGGAGAGGGAGACGGGAGAGGGC</font><font color="green"><u>NNNNN</u></font>cttttatttatttatgttt<br>tagacagtttcactctatcacccagggtggagtgcagcggcacaatctcagctcactgcaacctctgcctcctgggctgaagcgattcttatgcctcagc<br>ctcctgagtagctgagattaccggcacccaccaccatgcccagctaatttttgtatttttagtagagatggggttttgccatattgcccaggctggtctc<br>caactcctgggctcaaatgatctgcccgcctgggcctcccaaagtgctagcattacaggcatgagccactgtgcccggcatcattgcttttaaattgtga<br>aaagtattcctgtgatttgtttatcccttaacctatttatggacattgggttgtttccagttttgtgccatcacaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	42223736	42223737	3000066	0	-	1104685158586	TCGTGTTTCTTTGTGAATCATTTT	TGTGCTCTCTGAAACATGTGC	OTHER	SVA	SVA_F	ggttcataacttaacgtaaattacaatgaacaatccaaggaattagattatttcccgtcccagccagctttgtaaaggcacaacacgtgttgcagtgatc<br>acttaaatttgtacctaacttgtgcaagctacccctggtggtggaatgctgcccttctcagagtgaggctgaatgtgggcctaaagtatccagcatattt<br>tcttccaactctgaaattctgtggcttaggtcttgttactagaagtgaattctgtttcaccattaccagatattataaagttagaggtgcatttcagtag<br>aaaaaaataacattctcccctcaccccccagcaataaacctttggaaatgaaaaaacaatcaacttgtgatgaatactaacagtactaaa<font color="green"><u>GATCATTTTT<br></u></font><font color="red">CGCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCGTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCAATGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAG<br>ACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCACGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCT<br>CGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAA<br>GTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTG<br>CCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGTGCCTCTTCCCAGCCGCCATCACATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCAGCCCATCGCCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCCGCC<br>GAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGG<br>AGACCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCC<br>AACCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCG<br>TGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGG<br>GGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGTCAGCGCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAG<br>CCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTTGGGGGGTCAGCCCTCCGCCCGGCCAGCC<br>GCCCCGTCTGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGTGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCCCCCCCCGGCCAGCCGCCCCATCCGGGAGGTGA<br>GGGGCGCCTCCGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGG<br>CGGGAAAGGCGGGGAAAGGATTGGGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAA<br>AATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACAC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCA<br>AATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAA</font><font color="green"><u>GATCATTTTT</u></font>aatactcaaaatactaatggaaaaatctactc<br>taatcaaaatgattcacaaagaaacacgaagtaaaactacctcaccagaaatacagataatattattatctgcctgactataattcatatattattcatc<br>taatacagcaaataaacctatttattcctttgcattttactataggccatattcttgtcattaaataattactagtgttcattttacaattattaaaact<br>aggaggtttgtaaagagtaaaactttaaagtaggaaaagttaaatatttattttagctaactgatatctcataattccttttggtttaaaatattaatat<br>tccttttttgtaatcataatgaaatctgtttaaagaaatctactgccctatgtttttg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:KIAA0564:NM:015058:37/45
0	chr13	82367711	82367712	3000067	0	-	1104685166796	GATGGCCTAATGCAAAAAGTTC	CTCTGCCTAGGAAAACCAGAGA	OTHER	SVA	SVA_F	cgtttccaaatgttctgattccagtactcaaaataaaaatttctctatcaactggaagtaagctaatcatttttaagaagtgtataatttattttcatga<br>atcattactatattcaatgaaataaatagaaaaaagatctcttccaacaaaccaaagctactgagtctagaaacttctgtgtaaatacttgaaggaacac<br>acattaaaaatagaataacaactctcttctttcccttctttccctctctcagtattgcgattctccaaaaggtagctcacggctgtcctctctctgaaca<br>ttctccctgggtgtgcatatttttcattgatgtgattaccatggttatgctcataacttcttgatggttaccttttcatgctttag<font color="green"><u>AAAAGTCTTAACTA<br></u></font><font color="red">GGAGCCATCACACTCGGCCACAAATAACAAGCTTTAAAAGCCACCCCTCTCCCTCTCCCTCTCCCGCTCCCTCTCCCTCTCCCTCTCCCTCTCCACGGTC<br>TCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCAAATGCCTGC<br>GATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCG<br>CCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCGATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTC<br>ACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTC<br>TCTGCCTGGCCGCCCATCATCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTA<br>GGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGC<br>CCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCAGGCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTG<br>AGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCA<br>GCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGAGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCAT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGTCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCTGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCAT<br>TGAGAATGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGA<br>AAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTTACCCCCAACCCTGTGCTCTCTGAAACATGTG<br>CTGTATCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTC<br>CCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACC<br>TTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>TCTTAACTA</u></font>aatgaatatttgaaaaagtgtgtgaaaaattgtagagtccatgaataatgtgatctttcctcaaggaatttttactaaatccaccaaacag<br>ataattagattaggggcaatgtacctcaattttccctcctaggcttcccaaagcaggagattacaattatgagccacctcacccagcagactcaatccaa<br>cagcatttgtctgatctctttcctgttttttcctgaactttttgcattaggccatcagagattgaatttagagtatgaaatgttgaccttcttaatagac<br>tctaaattacaatttttgtctcctgagaaccactagcatttggtattttcagttttttaaaaatattttatattgatagaccactgttgtttcaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr14	81786783	81786784	3000068	0	-	1104685288518	TTTAATAGAACCCCTCCATCCA	AGTACCCAGGGACACAAACACT	OTHER	SVA	SVA_E	tttagagggtgtggctctgatgatcactgtcacatttcatctgtaggcacatcctaagccaggaagagacatcgcagagacctgtcctgaacacatcctc<br>ataagaggggagtgtcatccagtcttcttaaccccaaaggataatacaaaatagtgctgagagtaaatagattgctttcgctttagtttcagactgagat<br>cttgaggattaagtaagatgtgtgcatgtgcaggcaggagtagaaataatgaatgtaagatgtagctttaacgtgtggactttgtaatttttgagatgag<br>agtgaaaacttcagccctcacttagaaagaaatcacatttggctggaagtgctgtttctcccccatgttatgctatgtaatggattaatta<font color="green"><u>ACCATTTTT<br></u></font><font color="red">TGCCAGGCTGGTCTTGAACTCCCAGGCTCAAACAATGTCCCCACCTTGGCCTCCTACAGTGCTGGGATTACAAGGGCGTGAGCCACCACACCTGGCCTGT<br>ATAAGTCTTTCCTGGGAACATGCATGTGGAAGGTATTCAAAAAACATTTGTTAGGGATAAAAGACTTTATGGTATCTCCCCTCTCCCCTCTCCCCTCTCC<br>CCCTTCCCACGGTCTCCTTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTC<br>TCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTTTTGGTGGAGACGGGGTTTTGCTGT<br>GTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTTGTTCACTCAGTGCT<br>CAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCCAAAGTGCCGAGATTGCAG<br>CCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCCCAGTC<br>TGGAAAGTGAGGAGCGTCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGCGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGACGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCTGGCC<br>AGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCACCCCTACTGGGAAATGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTG<br>CCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGGAAAAAATTGAGAAATCGGATGGTTGCC<br>GGGTCTGTGTGGATAGAAGTAGACCTGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATC<br>CCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCA<br>GCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGA<br>CCTTTGTTCACTTGTTTATCTACTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAA<br>AAAATAAATAAATAAATTAAAAAA</font><font color="green"><u>ACCATTTTT</u></font>cacaattactctcctctttaaatctatttccttgagataggactttgcagctcctcttatcaagggt<br>tggagtctctttccctagcctgtgaatgtgggcttggcctttttacttactttagccaacagaattcatagaagtgaaggtgtgtgggtatgtcagttcc<br>aagcccaggtcccaagccaaggtcttaagaggctcacttacacaattctgcttgctctcctagaatctggcgtctcttggaatgtagacagaatgggctt<br>gcttgctgtggcccagagaccccatcaccccaggtgacagtgaccttacactggccacgtgagtgaggcaattctagaccagccagctaacctcagacac<br>ttgagtgggcctagcagagatcgg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:STON2:NM:033104:3/5
0	chr14	92619421	92619422	3000069	0	-	1104685285614	NA	NA	OTHER	SVA	SVA_F	aaagaaaaactccctttgacattttaaatctcaaaataagaaactgaaaagaaaaacaaaaaagaaacagaaaaatattttcagcactacgaccaataaa<br>aatgattttttcctaagagctcttccaaattagttaagaaaaggatgatcaacacatgaaaaagcacaagatacttaaaaaggcaatttacaaaataaga<br>aagacaaataactactggccatgaaaagatccttaattttactaatttttgaaaagcacaaaatataaaaaacataattgttttcatctatgagattggc<br>aatgccatacatggggaaagagtaccttcttccattatctgttggaaaattagtgcaactatgttaaaaggcaatttgctaacat<font color="green"><u>CAAATTTTATTTTTA<br></u></font><font color="red">GGGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCA<br>CCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGT<br>CTCCGCCCAGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCG<br>TCTGAGATGTGGGGAGCGCCTCTGCCCCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCTGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCT<br>GCCCGGCCGCCCCGTCTGAGAAGTGAGGGGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAG<br>AAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCA<br>GCCCCCCGCCCGTCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCC<br>CGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCCCTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGTAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAG<br>AAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTA<br>AGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCTCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGATTAAATGGAT<br>TAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACA<br>AACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCC<br>TGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAATAAAATAAAATAAAAAAAATAAAAAAAA</font><font color="green"><u>CAAATT<br>TTATTTTTA</u></font>acatttgacacagtatttctacttctaggaatttatcctactgaaacaatcacaaatgtgtaaaaaaaaagtacattcgtacattgcagca<br>atgcttatagtagtaaaaaactggacaaaattttaaaatccatcaaaatggaatgattaaatcagtagttctcatatatttatctcaggactaccttaga<br>ctcctaaaaattagagaaccccaaagagctttttgtttttgtgggttatatttatcaatgtctaccttatcagaaattaaaactgagcaatttttaaaat<br>atttatctgttcatttaaaaaataataaaaccagcagggcatggtggcttatacctgtaatcctagtactttgggaggtcgaggcaggcagatc	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CPSF2:NM:017437:9/16	
0	chr17	4959209	4959210	3000070	0	-	1104685548264	ACGGTTCCTTCTCCTCACCTA	AATCAGGGACACAAACACTGC	OTHER	SVA	SVA_F	aggcagaggttttggtgagccaagatcacaccattgcactccagcctggtcaacaagagcaaaactccaaaaaaagaaagaaagaggccaagtgcggtgg<br>ctcacacctataatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcaagaccatcccggctaacacggtgaaaccccgtctat<br>actaaaaatgcaaaaaaattagccgggcgtggtggtgcattcctgtaaccccagctactcaggaggctgaggcaggagaatcacttgaacccggaagcag<br>aggttgcagtgagccgggatcgtgccattgcattccagcctgggtgacaaaagcgaaactctgtctcaaaaattaaa<font color="green"><u>AAAAAAAAAAAAAAAAAAAAAAG<br></u></font><font color="red">CCCTCTCCCTCTGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCATTGCAACCTCCCTGCCT<br>GATTCTCCTGCCTCAGCCTGCCCAGTGCCTGCCATTGCAGGCACGCGCCGCCATGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGG<br>CAGGTCTCCAGCCCCTAACCGCGAGTGATCCCGCCAACCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGC<br>CCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCC<br>GGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTG<br>AGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCC<br>GCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGTGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGA<br>GCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCC<br>CGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCCCCCCCCGCCCACCGCCCCGTCCGGGAGGTGAGGGGCG<br>CTTTTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGG<br>ATGACAATGGCGGCTTTGTGGAATAGAAAGGCAGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGG<br>GAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTG<br>CTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGGGTGCTCGTTAAGAGTCATCACCAATC<br>CCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACC<br>TTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTA</font><font color="green"><u>AAAAAAAAAAAAAAAAAA<br>AAAAG</u></font>aaaagaaaagaaatgaaaaagaaagtgaaggggagaaaagcatctgtaaaagcccaagggtggtaggatgagagctcgtttccctgtgcacctgg<br>ggatgcacactcccctggaggaccagggaggcgccctcgtcctcttagggccactctaggtgaggagaaggaaccgtctattgtcctagaaaggccgatc<br>ctctctaggcttccaaatcgatggtgagctggaagagtggtgatgcggctcatcttcagagcgctttcttgtgctgtcgttgtcctccagagaagaggtt<br>gggggctgtgcaagatgggacaatgaccacccagggtaggcccatgtcatagtatggcagtgccgaggccttaaaaatctat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr17	80759992	80759993	3000071	0	+	1104685138531	CAGTGATGAGTCTGAATGACAGG	AAAATTGAGAAATCGGATGGTT	OTHER	SVA	SVA_E	cagcgtggcaggagggtggcgtgtgcgtgatcgtgtggctcagggtcagcgtggcaggagggcggcgtgtgcatcgtcgtgtggctcggagtcagcgtgg<br>caggagggcggcgtgtgcgtcgtgtggttcggagtcagcgtggcaggagggcgtcgtgtgcgtcgtgtggttcggagtcagcgtggcaggagggcggcgt<br>gtgtgtcgttgtgtggctcggagtcagcgtggcagcagggtggcgtgtgtgtcgtgtggctcggggtcagctcagcctccctggcgtggcagcgtgtgtg<br>cgtcgtgttgctcagaggcggtgtggcctccctggtgtggatgcgctgtgggggaaagctgcatcggatcagtgatgagtctgaatgacaggctc<font color="green"><u>NNNNN<br></u></font><font color="red">CTTTTTTTTTTTTTTTTTCCCAAGGCAGAAGAATTTTTCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTATACTTCTATCCACACAGACCCGGCAAC<br>CATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACC<br>TCCCAGACGGGGTCGTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCGGGGCAGAAGCGCCCCTCACCTCCCGGATGGGGCGGCTGGCCGG<br>GCGGGGGGCTGATCCCCCCACCACCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCTGGGCAGAGGCGCCGCT<br>CACCTCCTGGATAGGGCGGCTGGCTGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGTTGGCCGGGCAGAGGGGTCCTCACTTCCCAGT<br>AGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCCGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACAGGGCGGCTGGCC<br>GACCCCCCCCCCGCCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCC<br>CGGACGGGGCGGCTGGCCAGGCGGGGGGCTGATCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCACCTCCCTCCCGG<br>ACTGGGCGGCTGGCTGGGCGGGGGCTGACCCCCCCACCTCCCTCCCAGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCC<br>GGGCAGAGGCGCCCCTCACCTCCTGGATAGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGG<br>GTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCCGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCG<br>GACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCACCTCCCTCCCGGACTGGGCGGCTGGCCGGGCGGGGGCTGAGACAGGCTCCCTTTC</font><font color="green"><u>NNNNN</u></font>ctg<br>ttggagaaagtgaaaccgcctttcttgctggcagaaatgatgtcttagcagtctgtagcggccggtgtgaacgggttggttctcaaggagacagactttt<br>ctagtgttcttagggtgctgtgtgttagcgaccttcagtttgtttcaagtgctataatacgtgtggtttgggaaggaattacttggttaaggtcagctca<br>cactccgtcctggatgatggcacattccagagacgcgtgttgtgttgcagtgttgggtgtgcagctcactctgtaggaagttgctcattaggcacagtgt<br>tcgtggctagtttctcaaagctgctgtggggaatgttcagtgctgtaccaggcagggttctccagagaagcagagcccataggatgtgtgtg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:TBCD:NM:005993:9/39
0	chr19	24011304	24011305	3000072	0	+	1104685516018	TTAAGCAGCATGGAAAAATGG	GAGTGAACGAGACTCCGTCTG	OTHER	SVA	SVA_E	aaacatcagtttctaaaaaaaaaaaaaagaaaaaaaaatgctgcaataattatgagtctataaatgactacttatatgaccatatatgtgaaagtttata<br>tatgtgctgcattctattttattagtctactttttcacctttatactcatatcaaattgtttaatttggtagctttgtaatgtgttttgaatcaggcact<br>ttaatgcctgcagcattctttctttctttttttttttttaatattgttgggtagtttgtttttcttttgagtctctgtatacttttgaggttggtgtttc<br>tatttcttcaaaaatgcaatgagaaatttgaaaaatattgcattaaatctgtagattgcattgagcaggatggactctgcaatat<font color="green"><u>AAGTATTTCAACCTT<br></u></font><font color="red">TAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCGTTACAACCTCCACCT<br>CCCAGCCGCCTGCCTTGGCCCCCCAAAGTGCCGAGATTGCAGCCTCTGCCCAGCTGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCA<br>TCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCC<br>TCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTATCTG<br>GGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCAGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCT<br>GGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGA<br>GGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCTGCCCTGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGT<br>GGGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCATCCAGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGG<br>AAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTT<br>GGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGT<br>GCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCA<br>GGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTACTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCG<br>AGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTATTTCAACCTT</u></font>tgtgtaagagcacactcaagagtgtgttgtttagtttctatat<br>atttgtaaatttttcagtttttttttttgcttttatcgttgtatactctcattccattttggtcatagaatgtagttcatagaaatttacttttaaaaaa<br>tttgataagacttcctttttgtcctaagatgtggtctttcaagggaaatgttgtatgagctattgagaagggtgtgtattctgatgttgttgaggagtgt<br>tctccataactctgtttggaataattgttttatactgcctttaagtagtctgttctcttattaacattctttcttgttttatttttattacaaaaagtgt<br>ggtattaaaatatattgttctaattatattgctttctgtgtg	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	downstream:RPSAP58:NR:003662
0	chr3	147607853	147607854	3000073	0	+	1104685605386	ATGCTTGAAGGCAGTATGCTC	CCCAGGGGACAAACTTCTAAA	OTHER	SVA	SVA_F	ttaatgaacaagttacgactgtgggtccctggagaaaagacagaacagaacttgtctcagagttgtcccatcagaagtgggagaaagctgtgctattcat<br>ctaccaactcctaaacctccttgctgacaactgttcccaggggctattaccccttccccagtgctgcctgacccatacccagctgcgcatgctcctgcca<br>ccagagaaagcccaagggagagaattgcaggtatttgcagtaagaagccatcaatatattcaggaaaggcaagtgtccaggcaatctgggtggattgtgg<br>ctgctgcccacactttcttagattccattctacggtgagaggagaccattatctgttctacattgtttcaacagatttagttt<font color="green"><u>TGTTCATTTTCATTGTT<br></u></font><font color="red">GGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGC<br>TCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTG<br>TCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATC<br>TAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCT<br>GCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGAGTCTCTGCCCGGCCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGCCCCGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGG<br>CAGCCACCCCGTCCGGGAGGGAGGTTGGGGGGGGGGTCAGCCCCCCCTGCCCGGCCAGCCACCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCC<br>CCTACTGAGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGTTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCACCGCCCCTTCTGGGAGGTGTGCCCAGTAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAA<br>AGGTGGGGAAAAGATTGAGAGATCGGATGGTTGCCGTGTCTGTGTGGAAGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCC<br>TCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTG<br>CAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGTATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAACCAGGGACACAAACACTGCGGA<br>AGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCC<br>CCTCTGCGAGAAACACCCAAGAATTATCAATAAAAAAATAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGTTCATTTTCATTGTT</u></font>caaatacgccgcagtcaga<br>gaacatctgacccttctctgtagagaaaaataaatgcccagtaggcagacagagaataatgggcctggcttgacctagaatggtaaaaatttagaagttt<br>gtcccctgggaaaagaggtcttacagtgctcagagtagctaggatgaactgagaaagctttttacctctttaaagaacagtgtaagatggactgtagcct<br>ttgaaaagtacctgtgaggccagagttagcaagatttttaaagagccaagttatgaggtaaatgattagctaactagagtttgtcacaattaggaagtga<br>gaatgaaattcaatttgtgtttagaagtttattttgcattaagctcttctatctagggttttaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr5	55448013	55448014	3000074	0	+	1104685095005	TGGTGACCCTACTCCATTTTT	AGCAGAAGAAACAGTCCCTGA	OTHER	SVA	SVA_F	ctgggtgacacagtgagaccacatctcggaaaaaaaaaaatctatatatatatatatgtgtgtgtgtatatatatgtatatatacgtgtgtatatataca<br>tatacatacacacgtatatgtgtgtatatacacatatatgtatatatgtatatatgtgtgtgtatatatatataaaaaatttttgtgcctcactaaagct<br>tttgtgcaagctactgaactagaaactggggatacaaagataaaaaaaggcatggtctgcctctagaagtttatagggttggaggagagtgggagaggaa<br>ggtgggggctcctaagtagtggtgaccctactccattttttttttttttagatgttcggtcttaggctaaaacttctgattcat<font color="green"><u>AAAAACTTTTGTTTGT<br></u></font><font color="red">TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCA<br>AATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAACAACAAAAACAAAAACAAAAACAAAAAAATAAATGA<br>ATAAAATAAAACAAGTACAAATTTAAACTAGAAAAAAAAA</font><font color="green"><u>AAAAACTTTTGTTTGT</u></font>tatgttaccttttgctaactgtaaagttaaaaatttcaagtcag<br>ggactgtttcttctgcttttggttctatctcaggaatgtggtaagtagaagtgatgctaagaattatgtccaaaaggtcacatctgtttttgcaacttaa<br>atttattttctcagagtggttctacaattgaagttttgtttgtcagactgctcacaaaaatctgcttacataagaatgtgcatttaatatatcctaaaca<br>atatatatatcctaaatgctgtgcataacagtgcttctctggttaaatgcattcaaagttctaacccagatgccaacagctcagagcctctcttgataga<br>acactcttcctgtcaaggctaaaatgagagcaggagaggt	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	396	141	NA	intron:ANKRD55:NM:024669:6/12
0	chr5	141379670	141379671	3000075	0	-	1104685237087	NA	NA	OTHER	SVA	SVA_Fsp	gaaaaagggtaggaatgaacagatgagcaataaattgtcatgttggggctgtacctgagatccaaacgaggatacagctgttataaagattaaggcagat<br>ttgtgatgagggatattattgcaaggtatgcaaaaatacatttaggtttttttttttttttaaagttaatataatggaatatcttaggtcaatatagcca<br>attaaggaggtagatacagaagttaaaagaagggtttaatttttttaactattttgaggctgggtgcagtggctcatgcctataatcccagtgctttggg<br>aggccaaagcaggaggatcacctgagatcagcagttcaaaaccagcctgggcaacataacaagaccctgtctctacgaaatttt<font color="green"><u>TGCTTGGCTAATTTTT<br></u></font><font color="red">AGACACCTATAATCCCAGCGCTTTGGGAGGCTGAGGCGGGCGGATCATGAGGTCAAGAGATTGAGATGATCCTGGCCAACATGGTGAAACCCCTTCTCTA<br>CTAAAAACAAACAAACAAAAATAGCTGGGCGTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCTGAGGCAGGAAAATCGCTTCAACCT<br>GGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCACCCAGACAACAGAGCAAGACTCCGTCTCAAAAAATAAAATAAAATAAAAGGAAA<br>AGAAAAAAGAAATTTCAGGCAGAGGAGGTCGCGGCGCCGGAGGCCCCAGAAGGGTCGAAGGCGCCGCGGGCTGGGGTCGGTGGCTTAGGGAGCCCGTCTG<br>GCCATGGTGGCCGCGGCTGGTGGTTGGCGCGGCTGCGCTGCGGCCCGGGGCAGTGCGGAGCCAGGACAGTCGCGGCGCTGACGCCCGCGGCCCCCAGCTG<br>CAGATATGAAGCGGAGCTGCTACCGCGACCGACGGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTT<br>GCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGTACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCC<br>CAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTTTGGGAAGTGAGGAGTGTCTCTGCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCT<br>CTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTA<br>GGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCG<br>GCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTG<br>AGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCA<br>GCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCA<br>GCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGT<br>AGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGG<br>CGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGTCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TTGGGGGGTCAGCCCCCGCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCAGCCAGCCGCCCCGTCCGGGAG<br>GTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCGGCCACCACCCTGTCTGGGAGGTGTGCCCAACAGCTCATTGAGA<br>ACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAA<br>GTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCT<br>GAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTC<br>ATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTA<br>TCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAA<br>AAAAAAAAAAAAAAAAGAATGGACTTTCCCAGGCCAGCTGTGGTGGCTCACGACTGTAATCCCAGCACTGTGGCAGGCCAAGGCGGGCAGATCACCTGAG<br>ATCAGGAGTTCAAGACCAGCCTGACCAACACGGAGAAACCCCGTCTCTACTAAAAATAAAAAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTAATCCCA<br>GCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGTTGTGAGCTGAGATTGCACCATTGCACTCCAGCCTGGGCAACAAGA<br>GGGAAACTCCATCAAAAAAAAAAAAAAAAAAGGACTTTCTCAAAGAAAATGTATTTAAATGTCTGCACCAATAATTCCAGCATGTGTATGAATAAATATG<br>ATATGTCCTTTACAGTGAAGGTCTAATAAGATTTACTTATATGCCTTTTCCTTCTTAGAAAGTCTCTAAGAAATAAAATATCTTTACAATCAAAAAAAAA<br>AAAAAA</font><font color="green"><u>TGCTTGGCTAATTTTT</u></font>tggtggtgcatgcctgtagtcccagccgctcagaaggctgagacaagaggattgcttgagcccaggagttcaagactg<br>ctgtgaactataatcgcatcactgtaccccaactctggacaacagaacaagaccccatctcaaaaaaatatttttttttgatataaatccaatgattttt<br>atgtttatggaatactgcacttccttaccacaatccttttttttttttttttttaaagagagaaagtctcaccctgtcttccaggctggagtgcagtggt<br>gcgatctcagctcactgcaacctctgcttcctgggttcaagtgattctcctgcctcagactgcccagtagctgggattacaggtgtgcaccaccacaccc<br>acctaa	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	153429857	153429858	3000076	0	+	1104685223392	CAAGAGGGTGGAATCTCCTTC	CAGAGGCGTAGTGGCTGTATC	OTHER	SVA	SVA_Fsp	atctcaaaattcttctgcttcagttaattatgctctaaattctcagaaatgtacctcagaatactaggaaacaagtttggcaggcaaatggcagaaatgg<br>cacagggatgaagatgaaacaggcattcattcctgggaaattcctggagggaagtcagatttccagcctgagaaaaaataagctcacttctcccccttgt<br>gcccagaacttcagatgctatgagccatatatttccttgaatgagagaaggcaagagggtggaatctccttcttttgacctctcattccaacatttctat<br>actgcaattaatacatttgtagtagtacaatatattggtttgaaacagactgatgtcagtttttaaaacaattaaggtgt<font color="green"><u>GGAATGTAGGGGAATTTTCT<br></u></font><font color="red">GAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGT<br>GCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTT<br>AAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCGGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCAC<br>TTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTA<br>AAAAAAAAAAAAAAAAAAAAAAAAGAATGGACTTTCCCAGGCCAGCTGTGGTGGCTCACGACTGTAATCCCAGCACTGTGGCAGGCCAAGGTGGGCAGAT<br>CACCTGAGATCAGGAGTTCAAGACCAGCCTGACCAACACGGAGAAACCCCGTCTCTACTAAAAATAAAAAAAATTAGCTGGGCGTGGTGGTGCATGCCTG<br>TAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGTTGTGAGCTGAGATTGCACCATTGCACTCCAGCCTGGG<br>CAACAAGAGGGAAACTCCATCAAAAAAAAAAAAAAAAAAAGGACTTTCTCAAAGAAAATGTATTTAAATGTCTGCACCAATAATTCCAGCATGTGTATGA<br>ATAAATATGATATGTCCTTTACAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGAATGTAGGGGAATTTTCT</u></font>atctgatacagccactacgcctctggtaccccttca<br>cttagccttatgtatttgtacctaattaatgtatgaatgcaagagtgtgcatgtgtgtgtttgcgtgtagacagacagatcaatctttatagccttgctc<br>tacaaaggagtccaaatggagctctatgaaccaattaaaaaaacctcaaagaccaagtatagccatctcatgggggcaggcatttttgtctgttttgttc<br>cctagtcaatctgcatctctcagaacagtgctagcacatagtgggtgctcagtaagtaatttgtttaatcaaaatcacttactcctctttcccagactat<br>ttctataaaagccaaatgcaatcaaacattagaaacaagcaaat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1037	175	NA	intron:RGS17:NM:012419:1/5
0	chr9	134289811	134289812	3000077	0	-	1104685068643	CTCACATCCCAGACGATGG	GGGCAACAGTCCTGGTAAAA	OTHER	SVA	SVA_F	tcacttgaggtcaatagttcaagaccagcctggccaatatggtgaaaccccatctctactaaaaatacaaaaatcagttgggcgtggtggcaggcacctg<br>tagtcccagctacttgggaggctgaggcagaagatcacttgaacccgggaggtagaggttgcagtgagccaagatcaggccactacactccagtctgggc<br>gacacagcagagactccatctccaaaaaaaaaaaaagcccaagatggtagccgcaccatgggccagaggggcaacagtcctggtaaaagcaggatagagg<br>cttctggaggaacaaacaggatggattatctaccatttccaggaaattacaaattagtattgattgcattttcttggagcaatgt<font color="green"><u>AAAAAGCAAAAGATA<br></u></font><font color="red">GAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCGGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGAT<br>TGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCG<br>CCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCG<br>GGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGG<br>GAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGT<br>CTGGGAGGGAGGTTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGT<br>CAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGA<br>CAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTA<br>ATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAGCAAAAGATA</u></font>aaactttaatgcagtttaatgtatcaaatttttctactttggttactgctttctgtgtccgatttttccaaaatcatgaag<br>atatcctatgttttattctagaggctttattgttttatctttcatgtttacatctatgatctacctaacactgatttctcgatatgatttgtgataaaag<br>tttcatttttttcccttatggagagttcagttctcccagtaccttttctgaaaaggccatcttttctctttgtcatgtgtcataaattaagtgactactg<br>atgtgcagtttgtttgaagactgttccctccaatcagcctatttgtctatctttttggcaacactgcattgtcttaatcactgcagcttttataaagtct<br>ggat	Venter	<UL><LI>Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde.  Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 2009 Sep;19(9):1516-26. Epub 2009 May 13. <a href="http://www.ncbi.nlm.nih.gov/pubmed/19439515?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">PMID: 19439515</a>.</LI><LI> Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC.  The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID: 17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
