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ABSOLUTE
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AsymTools
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BreakPointer
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BreakPointer output
ContEst
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How do I prepare the input files?
Converting Birdseed to VCF
How do I build ContEst from the source?
ChainFinder
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What is the ChainFinder Algorithm?
Copynumber Pipeline
D-ToxoG
deTiN
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dRanger
Firehose
GISTIC
HAPSEG
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Indelocator
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InVEx
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Example InVEx run
JuncBASE
Oncotator
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PathSeq
POLYSOLVER
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PHIAL
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RNA-SeQC
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SegSeq
SignatureAnalyzer
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MuTect
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How do I run MuTect?
How do I get help?
TARGET
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MutSig
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How do I run MutSig?
MutSig FAQ
TranspoSeq
How do I get TranspoSeq?
TranspoSeq-Exome
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