Difference between revisions of "Gsea papers"
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| − | These are papers in which GSEA / Kolmogorov-Smirnov statistics were used. | + | These are papers in which GSEA / Kolmogorov-Smirnov statistics were used. They are illustrative of the kinds of applications of the methodology.<br />An up-to-date listing of Broad Cancer Genomics publications is available [[http://somethinbg]]<br /><br />Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S. & Mesirov, J. P. <span style="font-style: italic;">(2005) Proc. Natl. Acad. Sci. USA 102, 15545-15550</span>. <span style="font-weight: bold;">Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles.</span><br /><br />Andrea Bild and Phillip George Febbo <span style="font-style: italic;">PNAS | October 25, 2005 | vol. 102 | no. 43 | 15278-15279</span> COMMENTARY:<span style="font-weight: bold;"> Application of a priori established gene sets to discover biologically important differential expression in microarray data</span> pdf<br /><br />Lamb, J., Ramaswamy, S., Ford, H. L., Contreras, B., Martinez, R. V., Kittrell, F. S., Zahnow, C. A., Patterson, N., Golub, T. R., and Ewen, M. E. (2003). <span style="font-weight: bold;">A mechanism of cyclin D1 action encoded in the patterns of gene expression in human cancer</span>. Cell 114, 323-334. pdf<br /> |
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| − | They are illustrative of the kinds of applications of the methodology. | ||
| − | An up-to-date listing of Broad Cancer Genomics publications is available [[http://somethinbg]] | ||
| − | |||
| − | Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S. & Mesirov, J. P. (2005) Proc. Natl. Acad. Sci. USA 102, 15545-15550. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. | ||
| − | Andrea Bild and Phillip George Febbo PNAS | October 25, 2005 | vol. 102 | no. 43 | 15278-15279 COMMENTARY: Application of a priori established gene sets to discover biologically important differential expression in microarray data pdf | ||
| − | Lamb, J., Ramaswamy, S., Ford, H. L., Contreras, B., Martinez, R. V., Kittrell, F. S., Zahnow, C. A., Patterson, N., Golub, T. R., and Ewen, M. E. (2003). A mechanism of cyclin D1 action encoded in the patterns of gene expression in human cancer. Cell 114, 323-334. pdf | ||
Revision as of 01:07, 15 March 2006
These are papers in which GSEA / Kolmogorov-Smirnov statistics were used. They are illustrative of the kinds of applications of the methodology.
An up-to-date listing of Broad Cancer Genomics publications is available [[1]]
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S. & Mesirov, J. P. (2005) Proc. Natl. Acad. Sci. USA 102, 15545-15550. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles.
Andrea Bild and Phillip George Febbo PNAS | October 25, 2005 | vol. 102 | no. 43 | 15278-15279 COMMENTARY: Application of a priori established gene sets to discover biologically important differential expression in microarray data pdf
Lamb, J., Ramaswamy, S., Ford, H. L., Contreras, B., Martinez, R. V., Kittrell, F. S., Zahnow, C. A., Patterson, N., Golub, T. R., and Ewen, M. E. (2003). A mechanism of cyclin D1 action encoded in the patterns of gene expression in human cancer. Cell 114, 323-334. pdf
