Difference between revisions of "MSigDB XML description"
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MSigDB database in XML format captures both the content (i.e., gene members) and annotation about the gene sets in MSigDB. Here we describe the tags and attributes of the XML file. | MSigDB database in XML format captures both the content (i.e., gene members) and annotation about the gene sets in MSigDB. Here we describe the tags and attributes of the XML file. | ||
| − | + | <p>Database tags and attributes: apply to all genes in the file.</p> | |
| − | <table> | + | <table width=75% border=2> |
| − | <tr>< | + | <tr><th>xml tag</th><th>description</th></tr> |
<tr><td>MSIGDB NAME</td><td>name of the database</td></tr> | <tr><td>MSIGDB NAME</td><td>name of the database</td></tr> | ||
| + | <tr><td> VERSION</td><td>version of the database</td></tr> | ||
| + | <tr><td>BUILD_DATE</td><td>date the XML file has been built</td></tr> | ||
</table> | </table> | ||
| − | + | <p>Gene set tags and attributes: apply to individual gene sets in the file.</p> | |
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| + | <table width=75% border=2> | ||
| + | <tr><th>xml tag</th><th>description</th></tr> | ||
| + | </table> | ||
GENE_SET_STANDARD_NAME | GENE_SET_STANDARD_NAME | ||
Revision as of 14:14, 30 July 2010
MSigDB database in XML format captures both the content (i.e., gene members) and annotation about the gene sets in MSigDB. Here we describe the tags and attributes of the XML file.
Database tags and attributes: apply to all genes in the file.
| xml tag | description |
|---|---|
| MSIGDB NAME | name of the database |
| VERSION | version of the database |
| BUILD_DATE | date the XML file has been built |
Gene set tags and attributes: apply to individual gene sets in the file.
| xml tag | description |
|---|
GENE_SET_STANDARD_NAME
