Difference between revisions of "MSigDB collections"
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<li>[http://www.affymetrix.com Affymetrix] microarray annotations</li> | <li>[http://www.affymetrix.com Affymetrix] microarray annotations</li> | ||
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| + | <p>We merged the relevant annotations from these resources and derived a single cytogenetic band location for every gene symbol. These were then grouped into sets. Decimals in cytogenetic bands were ignored. For example, 5q31.1 was considered 5q31. Therefore, genes annotated as 5q31.2 and those annotated as 5q31.3 were both placed in the same set, 5q31.</p> | ||
<h2>C2: curated gene sets</h2> | <h2>C2: curated gene sets</h2> | ||
Revision as of 16:23, 6 March 2014
<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> |
<a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> |
<a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> |
Documentation |
<a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>
This page provides detailed descriptions of all collections of gene sets in MSigDB.
To learn about changes and other information specific for a particular release of MSigDB, please refer to the corresponding Release_Notes.
Contents
H: Hallmarks
some text
C1: positional gene sets
Genes from the same genomic location (chromosome or cytogenetic band) are grouped in a gene set. Cytogenetic annotations are from three sources:
- Human Genome Organization (HUGO) Gene Nomenclature Committee (HGNC)
- UniGene
- Affymetrix microarray annotations
We merged the relevant annotations from these resources and derived a single cytogenetic band location for every gene symbol. These were then grouped into sets. Decimals in cytogenetic bands were ignored. For example, 5q31.1 was considered 5q31. Therefore, genes annotated as 5q31.2 and those annotated as 5q31.3 were both placed in the same set, 5q31.
C2: curated gene sets
some text
C3: motif gene sets
some text
C4:computational gene sets
some text
C5: GO gene sets
some text
C6: oncogenetic signatures
some text
C7: immunologic signatures
some text
