Difference between revisions of "GSEA v2.0.1 Release Notes"

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<a href="http://www.broad.mit.edu/gsea/">GSEA Home</a> |  <a href="../../software/software_index.html">Software</a> | <a href="../../msigdb/msigdb_index.html">MSigDB</a> | [[Main_Page|Documentation]] | <a href="../../resources/resources_index.html">Resources</a><br />
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[http://www.broadinstitute.org/gsea/ GSEA Home] |
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[http://www.broadinstitute.org/gsea/downloads.jsp Downloads] |
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[http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] |  
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[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |
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[http://www.broadinstitute.org/gsea/contact.jsp Contact] <br />
 
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Release 2.0.1 fixes two known problems:
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Release 2.0.1 corrects two known problems in the GSEA software:
 
<ul>
 
<ul>
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     <li>Leading edge analysis no longer fails if your GSEA report is based on a preranked list or continuous phenotype.</li>
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     <li>Leading edge analysis no longer fails if your GSEA report is based on a preranked list or continuous phenotype. This problem occurred and was fixed in the user interface; no change was made to the algorithm.<br />
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    <li>GSEA Run page includes a scroll bar to keep the <em>Run </em>button visible regardless of your screen resolution or window size.<br />
 
 
     </li>
 
     </li>
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    <li>GSEA Run page includes a scroll bar to keep the <em>Run </em>button visible regardless of your screen resolution or window size.</li>
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</ul>
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<br />
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Release 2.0.1 also corrects an error in the <em>GSEA User Guide</em>:<br />
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<ul>
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    <li>Changed the number of permutations recommended for gene_set permutation from 10000 to 1000.</li>
 
</ul>
 
</ul>

Latest revision as of 02:13, 25 September 2016

GSEA Home | Downloads | Molecular Signatures Database | Documentation | Contact

Release 2.0.1 corrects two known problems in the GSEA software:

  • Leading edge analysis no longer fails if your GSEA report is based on a preranked list or continuous phenotype. This problem occurred and was fixed in the user interface; no change was made to the algorithm.
  • GSEA Run page includes a scroll bar to keep the Run button visible regardless of your screen resolution or window size.


Release 2.0.1 also corrects an error in the GSEA User Guide:

  • Changed the number of permutations recommended for gene_set permutation from 10000 to 1000.
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