Software Acknowledgements

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GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.

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<a href="http://www.jidesoft.com">Jide Software</a>	Java/Swing components
<a href="http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform	Language that the GSEA desktop application is written in
<a href="http://www.r-project.org/index.html">The R programming language</a>	Language that the GSEAP-P-R is written in
<a href="http://www.intellij.com/idea/">Intellij IDEA</a>	An awesome integrated development environment for Java
<a href="http://www.jgoodies.com/">JGoodies</a>	Forms layout and java look and feel
<a href="http://foxtrot.sourceforge.net/docs/introduction.php">foxtrot</a>	Java event handling mechanism for GUI's.
<a href="http://www.dom4j.org/">dom4j</a>	XML Parser
<a href="http://www.lowagie.com/iText/">itext</a>	Java PDF library
<a href="http://jakarta.apache.org/poi/hssf/index.html">Jakarta POI (especially HSSF)</a>	Java excel reporting
<a href="http://www.object-refinery.com/jfreechart/">JFreeChart</a>	Graphing library for Java
<a href="http://www.junit.org/index.htm">JUnit</a>	Unit testing API
<a href="http://jakarta.apache.org/log4j/docs/">log4j</a>	Logging toolkit for Java
<a href="http://jakarta.apache.org/oro/">Oro</a>	Regular expressions library in Java
<a href="http://trove4j.sourceforge.net">Trove</a>	High performance collections library from GNU
<a href="http://jakarta.apache.org/ecs">ECS</a>	Element construction set (a HTML tag library from Apache Jakarta
<a href="http://home.snafu.de/tilman/xenulink.html">Xenu link sleuth</a>	Website broken link checker