Difference between revisions of "Software Acknowledgements"

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[http://www.broadinstitute.org/gsea/ GSEA Home] |
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<p><font size="3">GSEA implementations use many software tools and libraries, several of which are open source and/or freely available. Our thanks to their developers.</font></p>
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[http://www.broadinstitute.org/gsea/downloads.jsp Downloads] |
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</div>
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[http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] |
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<p> </p>
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[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |
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<table cellpadding="0" border="0" class="MsoNormalTable" style="">
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[http://www.broadinstitute.org/gsea/contact.jsp Contact]
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<br>
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        <tr style="height: 73.5pt;">
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 73.5pt;">
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<p>
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            <p><font size="3">Jide Software</font></p>
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The GSEA Desktop v3.0 and greater is distributed, in part, under and subject to the provisions of licenses for [https://raw.githubusercontent.com/GSEA-MSigDB/gsea-desktop/master/LICENSE-3RD-PARTY.txt a number of third-party libraries and components] used in its development.  
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</p>
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 73.5pt;">
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<p>
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            <p><font size="3">Java/Swing components</font></p>
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The MSigDB XML Browser v1.0 Beta is distributed, in part, under and subject to the provisions of licenses for
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            </td>
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[https://raw.githubusercontent.com/GSEA-MSigDB/msigdb-xml-browser/master/LICENSE-3RD-PARTY.txt a number of third-party libraries and components] used in its development.
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 73.5pt;">
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</p>
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            <p><font size="3">[http://www.jidesoft.com </font><font size="3">http://www.jidesoft.com</font><font size="3">]</font></p>
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<p>
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            </td>
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GSEA gratefully acknowledges the
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        </tr>
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[http://www.broadinstitute.org/gsea/msigdb/download_file.jsp?filePath=/resources/software/gsea2.x-3RD-PARTY-ACKNOWLEDGMENTS.txt listed components] used in the development of the v2.x code.
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</p>
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 73.5pt;">
 
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            <p><font size="3">The Java 2 Platform </font></p>
 
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            <p><font size="3">[[image:duke.gif]]</font></p>
 
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            </td>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 73.5pt;">
 
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            <p><font size="3">Language that the GSEA desktop application is written in</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 73.5pt;">
 
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            <p><font size="3">[http://java.sun.com/ </font><font size="3">http://java.sun.com/</font><font size="3">]&nbsp;</font></p>
 
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            <p><font size="3"><span class="body">The R programming language</span></font> </p>
 
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            <p><font size="3">[[image:Rlogo.jpg]]</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 84pt;">
 
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            <p><font size="3">Language that the GSEAP-P-R is written in</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 84pt;">
 
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            <p><font size="3">[http://www.r-project.org/index.html]</font></p>
 
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        <tr style="height: 64.5pt;">
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
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            <p><font size="3">&nbsp;Intellij IDEA</font></p>
 
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            <p><font size="3">[[image:idea.png]]</font></p>
 
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            </td>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
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            <p><font size="3">An awesome integrated development environment for Java</font></p>
 
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            </td>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
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            <p><font size="3">[http://www.intellij.com/idea/]&nbsp;</font></p>
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 24pt;">
 
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            <p><font size="3">JGoodies</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 24pt;">
 
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            <p><font size="3">Forms layout and java look and feel</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 24pt;">
 
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            <p><font size="3">[http://www.jgoodies.com/]</font></p>
 
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            </td>
 
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        <tr style="height: 64.5pt;">
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
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            <p><font size="3">foxtrot</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
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            <p><font size="3">Java event handling mechanism for GUI's.</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
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            <p><font size="3">&nbsp;[http://foxtrot.sourceforge.net/docs/introduction.php]&nbsp;</font></p>
 
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        <tr style="height: 64.5pt;">
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
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            <p><font size="3">dom4j</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
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            <p><font size="3">XML Parser</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
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            <p><font size="3">[http://www.dom4j.org/]&nbsp;</font></p>
 
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            </td>
 
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        </tr>
 
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        <tr style="height: 64.5pt;">
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
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            <p><font size="3">itext </font></p>
 
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            <p><font size="3">[[image:itext.gif]]</font></p>
 
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            </td>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
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            <p><font size="3">Java PDF library</font></p>
 
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            </td>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
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            <p><font size="3">[http://www.lowagie.com/iText/]</font></p>
 
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        <tr style="height: 96.75pt;">
 
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            <p><font size="3"><st1:place w:st="on"><st1:city w:st="on">jakarta</st1:city></st1:place>  POI (especially HSSF) </font></p>
 
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            <p><font size="3">[[image: poi-logo.png]]</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 96.75pt;">
 
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            <p><font size="3">Java excel reporting</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 96.75pt;">
 
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            <p><font size="3">[http://jakarta.apache.org/poi/hssf/index.html]&nbsp;</font></p>
 
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            </td>
 
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        <tr style="height: 123pt;">
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 123pt;">
 
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            <p><font size="3">JFreeChart </font></p>
 
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            <p><font size="3">[[image: jfreechart.png]]</font></p>
 
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            </td>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 123pt;">
 
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            <p><font size="3">Graphing library for Java</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 123pt;">
 
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            <p><font size="3">[http://www.object-refinery.com/jfreechart/]&nbsp;</font></p>
 
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            <p><font size="3">JUnit </font></p>
 
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            <p><font size="3">[[image: junit.gif]]</font></p>
 
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            </td>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 82.5pt;">
 
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            <p><font size="3">Unit testing API</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 82.5pt;">
 
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            <p><font size="3">[http://www.junit.org/index.htm]&nbsp;</font></p>
 
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        <tr style="height: 130.5pt;">
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 130.5pt;">
 
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            <p><font size="3">log4j </font></p>
 
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            <p><font size="3">[[image:log4j.jpg]</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 130.5pt;">
 
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            <p><font size="3">Logging toolkit for Java</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 130.5pt;">
 
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            <p><font size="3">[http://jakarta.apache.org/log4j/docs/]&nbsp;</font></p>
 
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        <tr style="height: 38.25pt;">
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 38.25pt;">
 
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            <p><font size="3">Oro</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 38.25pt;">
 
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            <p><font size="3">Regular expressions library in Java</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 38.25pt;">
 
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            <p><font size="3">[http://jakarta.apache.org/oro/]&nbsp;</font></p>
 
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            <p><font size="3">Trove</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
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            <p><font size="3">High performance collections library from GNU</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
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            <p><font size="3">[http://trove4j.sourceforge.net/]&nbsp;</font></p>
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 49.5pt;">
 
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            <p><font size="3">ECS</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 49.5pt;">
 
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            <p><font size="3">Element construction set (a HTML tag library from Apache&nbsp; <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 49.5pt;">
 
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            <p><font size="3">[http://jakarta.apache.org/ecs/]</font></p>
 
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        <tr style="height: 49.5pt;">
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 49.5pt;">
 
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            <p><font size="3">Xenu link sleuth</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 49.5pt;">
 
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            <p><font size="3">Website broken link checker</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 49.5pt;">
 
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            <p><font size="3">[http://home.snafu.de/tilman/xenulink.html]</font></p>
 
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            <td width="28%" style="padding: 0.75pt; width: 28%; height: 12pt;">
 
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            <p><font size="3">InstallAnywhere</font></p>
 
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            <td width="34%" style="padding: 0.75pt; width: 34%; height: 12pt;">
 
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            <p><font size="3">Java installation program builder</font></p>
 
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            <td width="40%" style="padding: 0.75pt; width: 40%; height: 12pt;">
 
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            <p><font size="3">[http://www.zerog.com/]</font></p>
 
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<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
 

Latest revision as of 00:51, 22 August 2019

GSEA Home | Downloads | Molecular Signatures Database | Documentation | Contact

The GSEA Desktop v3.0 and greater is distributed, in part, under and subject to the provisions of licenses for a number of third-party libraries and components used in its development.

The MSigDB XML Browser v1.0 Beta is distributed, in part, under and subject to the provisions of licenses for a number of third-party libraries and components used in its development.

GSEA gratefully acknowledges the listed components used in the development of the v2.x code.

Retrieved from "https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Software_Acknowledgements&oldid=4329"