|
|
| (38 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| | + | [http://www.broadinstitute.org/gsea/ GSEA Home] | |
| | + | [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | |
| | + | [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] | |
| | + | [http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] | |
| | + | [http://www.broadinstitute.org/gsea/contact.jsp Contact] |
| | <br /> | | <br /> |
| − | <pre><!-- <?xml version="1.0" encoding="UTF-8"?> --> <br /><!-- <!-- --> <br /><!-- This is the DTD for MSigDB.--><br /><!-- It describes a format for a database of gene sets that captures --><br /><!-- both the content of a gene set (i.e gene members) as well as annotation about --><br /><!-- the gene set. --><br /><!-- @VERSION 1.0 May 2006 --> <br /><!-- @AUTHOR Aravind Subramanian --><br /><!-- --> --><br /><!-- <!DOCTYPE MSIGDB [ --><br /><!-- <!ELEMENT MSIGDB GENESET* -- top level container --><br /><!-- <!ATTLIST MSIGDB<br /><!-- NAME CDATA #REQUIRED -- name of the database<br /><!-- VERSION CDATA #REQUIRED -- version of the database<br /><!-- ><br /><!-- <br /><!-- <!ELEMENT GENESET -- a single gene set --><br /><!-- <!ATTLIST GENESET<br /><!-- STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br /><!-- SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br /><!-- ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br /><!-- EXTERNAL_DETAILS_URL CDATA -- 3rd party url for more info<br /><!-- CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br /><!-- CATEGORY_CODE CDATA (C1|C2|C3|C4)<br /><!-- SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br /><!-- CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br /><!-- PMID CDATA -- PubMed ID if available<br /><!-- GEOID CDATA -- GEO ID if available<br /><!-- DESCRIPTION CDATA -- a full detailed desc or abstract<br /><!-- DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br /><!-- %MESH CDATA -- keywords and MESH identifiers<br /><!-- %MEMBERS CDATA #REQUIRED -- Genes in the native format<br /><!-- %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols<br /><!-- ><br /><!-- ]></pre>
| + | <br /> |
| | + | Following is the dtd for MSigDB. <br /> |
| | + | To download the DTD, click [http://www.broadinstitute.org/gsea/dtd/msigdb.dtd.txt here].<br /> |
| | + | <br /> |
| | + | [[image:Msigdb_dtd_v2.png]] |
Latest revision as of 02:54, 25 September 2016
