Difference between revisions of "Msigdb dtd"

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<br /><span style="font-weight: bold;">Note</span>: To include the dtd in Wiki, the angle brackets were removed.<br />
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[http://www.broadinstitute.org/gsea/ GSEA Home] |
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<pre>xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot;<br /><br />    This is the DTD for MSigDB.<br /> It describes a format for a database of gene sets that captures<br /> both the content of a gene set (i.e gene members) as well as annotation about<br /> the gene set.<br /> @VERSION 1.0 May 2006<br /> @AUTHOR Aravind Subramanian<br /><br />DOCTYPE MSIGDB <br />ELEMENT MSIGDB GENESET*          -- top level container<br />ATTLIST MSIGDB<br />  NAME CDATA #REQUIRED -- name of the database<br />  VERSION CDATA #REQUIRED -- version of the database<br /><br /><br />ELEMENT GENESET                  -- a single gene set<br />ATTLIST GENESET<br /> STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br /> SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br /> ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br /> EXTERNAL_DETAILS_URL CDATA             -- 3rd party url for more info<br /> CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br /> CATEGORY_CODE CDATA (C1|C2|C3|C4)<br /> SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br /> CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br /> PMID CDATA -- PubMed ID if available<br /> GEOID CDATA -- GEO ID if available<br /> DESCRIPTION CDATA -- a full detailed desc or abstract<br /> DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br /> %MESH CDATA -- keywords and MESH identifiers<br /> %MEMBERS CDATA #REQUIRED -- Genes in the native format<br /> %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols<br /><br /></pre>
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[http://www.broadinstitute.org/gsea/downloads.jsp Downloads] |
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[http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] |
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[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |
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[http://www.broadinstitute.org/gsea/contact.jsp Contact]
 
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Following is the dtd for MSigDB. <br />
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To download the DTD, click [http://www.broadinstitute.org/gsea/dtd/msigdb.dtd.txt here].<br />
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[[image:Msigdb_dtd_v2.png]]

Latest revision as of 02:54, 25 September 2016

GSEA Home | Downloads | Molecular Signatures Database | Documentation | Contact

Following is the dtd for MSigDB.
To download the DTD, click here.

Msigdb dtd v2.png

Retrieved from "https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Msigdb_dtd&oldid=4035"