Difference between revisions of "1010"
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| − | You selected a categorical phenotype for the <span style="font-style: italic;">Phenotype labels</span> parameter; however, the metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter is used with continuous phenotypes. Select one of the following metrics for categorical | + | You selected a categorical phenotype for the <span style="font-style: italic;">Phenotype labels</span> parameter; however, the metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter is used with continuous phenotypes. Select one of the following metrics for a categorical phenotype:<br /> |
<ul> | <ul> | ||
<li>Signal2Noise (default)</li> | <li>Signal2Noise (default)</li> | ||
<li>tTest</li> | <li>tTest</li> | ||
| − | <li> | + | <li>Ratio_of_Classes</li> |
| + | <li>Diff_of_Classes</li> | ||
| + | <li>log2_Ratio_of_Classes</li> | ||
</ul> | </ul> | ||
| − | For | + | <br /> |
| + | For information about phenotypes, see [http://www.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html?Phenotypes Phenotype Labels] in the <em style="">GSEA User Guide. </em><br /> | ||
| + | For information about the metrics, see the <span style="font-style: italic;">Metric for ranking genes </span>parameter on the [http://www.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html?Run_GSEA_Page Run GSEA Page] in the <em style="">GSEA User Guide</em>. | ||
Latest revision as of 12:03, 12 January 2007
You selected a categorical phenotype for the Phenotype labels parameter; however, the metric that you selected in the Metric for ranking genes parameter is used with continuous phenotypes. Select one of the following metrics for a categorical phenotype:
- Signal2Noise (default)
- tTest
- Ratio_of_Classes
- Diff_of_Classes
- log2_Ratio_of_Classes
For information about phenotypes, see Phenotype Labels in the GSEA User Guide.
For information about the metrics, see the Metric for ranking genes parameter on the Run GSEA Page in the GSEA User Guide.
