|
|
| (8 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | <a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> |
| + | [http://www.broadinstitute.org/gsea/ GSEA Home] | |
| − | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> |
| + | [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | |
| − | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> |
| + | [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] | |
| − | <a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> |
| + | [http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] | |
| − | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>
| + | [http://www.broadinstitute.org/gsea/contact.jsp Contact] |
| | <br> | | <br> |
| − | <p>GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.</p> | + | |
| − | <table>
| + | <p> |
| − | <tbody>
| + | The GSEA Desktop v3.0 and greater is distributed, in part, under and subject to the provisions of licenses for [https://raw.githubusercontent.com/GSEA-MSigDB/gsea-desktop/master/LICENSE-3RD-PARTY.txt a number of third-party libraries and components] used in its development. |
| − | <tr style="height: 73.5pt;">
| + | </p> |
| − | <td><a href="http://www.jidesoft.com">Jide Software</a></td>
| + | <p> |
| − | <td>Java/Swing components</td>
| + | The MSigDB XML Browser v1.0 Beta is distributed, in part, under and subject to the provisions of licenses for |
| − | <td></td>
| + | [https://raw.githubusercontent.com/GSEA-MSigDB/msigdb-xml-browser/master/LICENSE-3RD-PARTY.txt a number of third-party libraries and components] used in its development. |
| − | </tr>
| + | </p> |
| − | <tr>
| + | <p> |
| − | <td><a href="http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform</td>
| + | GSEA gratefully acknowledges the |
| − | <td>Language that the GSEA desktop application is written in</td>
| + | [http://www.broadinstitute.org/gsea/msigdb/download_file.jsp?filePath=/resources/software/gsea2.x-3RD-PARTY-ACKNOWLEDGMENTS.txt listed components] used in the development of the v2.x code. |
| − | <td>[[image:duke.gif]]</td>
| + | </p> |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://www.r-project.org/index.html">The R programming language</a></td>
| |
| − | <td>Language that the GSEAP-P-R is written in</td>
| |
| − | <td>[[image:Rlogo.jpg]]</td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://www.intellij.com/idea/">Intellij IDEA</a></td>
| |
| − | <td>An awesome integrated development environment for Java</td>
| |
| − | <td>[[image:idea.png]]</td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://www.jgoodies.com/">JGoodies</a></td>
| |
| − | <td>Forms layout and java look and feel</td>
| |
| − | <td></td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://foxtrot.sourceforge.net/docs/introduction.php">foxtrot</a></td>
| |
| − | <td>Java event handling mechanism for GUI's.</td>
| |
| − | <td></td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://www.dom4j.org/">dom4j</a></td>
| |
| − | <td>XML Parser</td>
| |
| − | <td></td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://www.lowagie.com/iText/">itext</a></td>
| |
| − | <td>Java PDF library</td>
| |
| − | <td>[[image:itext.gif]]</td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://jakarta.apache.org/poi/hssf/index.html">Jakarta POI (especially HSSF)</a></td>
| |
| − | <td>Java excel reporting</td>
| |
| − | <td>[[image: poi-logo.png]]</td>
| |
| − | </tr>
| |
| − | <tr style="height: 123pt;">
| |
| − | <td><a href="http://www.object-refinery.com/jfreechart/">JFreeChart</a></td>
| |
| − | <td>Graphing library for Java</td>
| |
| − | <td>[[image: jfreechart.png]]</td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://www.junit.org/index.htm">JUnit</a></td>
| |
| − | <td>Unit testing API</td>
| |
| − | <td>[[image: junit.gif]]</td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://jakarta.apache.org/log4j/docs/">log4j</a></td>
| |
| − | <td>Logging toolkit for Java</td>
| |
| − | <td>[[image:log4j.jpg]]</td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://jakarta.apache.org/oro/">Oro</a></td>
| |
| − | <td>Regular expressions library in Java</td>
| |
| − | <td>[[Image:Oro.logo.gif]]</td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://trove4j.sourceforge.net">Trove</a></td>
| |
| − | <td>High performance collections library from GNU</td>
| |
| − | <td></td>
| |
| − | </tr>
| |
| − | <tr>
| |
| − | <td><a href="http://jakarta.apache.org/ecs">ECS</a></td>
| |
| − | <td>Element construction set (a HTML tag library from Apache <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place></td>
| |
| − | <td>[[Image:Ecs-small.jpg]]</td>
| |
| − | </tr>
| |
| − | <tr style="height: 49.5pt;">
| |
| − | <td width="28%" style="padding: 0.75pt; width: 28%; height: 49.5pt;">
| |
| − | <p><font size="3">Xenu link sleuth</font></p>
| |
| − | </td>
| |
| − | <td width="34%" style="padding: 0.75pt; width: 34%; height: 49.5pt;">
| |
| − | <p><font size="3">Website broken link checker</font></p>
| |
| − | </td>
| |
| − | <td width="40%" style="padding: 0.75pt; width: 40%; height: 49.5pt;">
| |
| − | <p><font size="3">[http://home.snafu.de/tilman/xenulink.html </font><font size="3">home.snafu.de/tilman/xenulink</font><font size="3">]</font></p>
| |
| − | </td>
| |
| − | </tr>
| |
| − | </tbody>
| |
| − | </table>
| |
