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| − | <a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> |
| + | [http://www.broadinstitute.org/gsea/ GSEA Home] | |
| − | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> |
| + | [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | |
| − | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> |
| + | [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] | |
| − | [[Main_Page|Documentation]] | | + | [http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] | |
| − | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>
| + | [http://www.broadinstitute.org/gsea/contact.jsp Contact]<br> |
| − | <br>
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| − | <br>
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| − | <p>This page provides detailed descriptions of all collections of gene sets in MSigDB.</p>
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| − | <p>To learn about changes and other information specific for a particular release of MSigDB, please refer to the corresponding [[Release_Notes]].</p>
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| − | <h2>H: Hallmarks</h2>
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| − | <p>some text</p>
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| − | <h2>C1: positional gene sets</h2>
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| − | <p>Genes from the same genomic location (chromosome or cytogenetic band) are grouped in a gene set. Cytogenetic annotations are from three sources:</p>
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| − | <ol>
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| − | <li>[http://www.genenames.org Human Genome Organization (HUGO) Gene Nomenclature Committee (HGNC)]</li>
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| − | <li>[http://www.ncbi.nlm.nih.gov/unigene/ UniGene]</li>
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| − | <li>[http://www.affymetrix.com Affymetrix] microarray annotations</li>
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| − | </ol>
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| − | <p>We merged the relevant annotations from these resources and derived a single cytogenetic band location for every gene symbol. These were then grouped into sets. Decimals in cytogenetic bands were ignored. For example, 5q31.1 was considered 5q31. Therefore, genes annotated as 5q31.2 and those annotated as 5q31.3 were both placed in the same set, 5q31.</p>
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| − | <h2>C2: curated gene sets</h2> | + | <p> |
| − | <p>some text</p>
| + | See the [http://software.broadinstitute.org/gsea/msigdb/collections.jsp MSigDB Collections page] on the main website. |
| − | <h2>C3: motif gene sets</h2>
| + | </p> |
| − | <p>some text</p>
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| − | <h2>C4:computational gene sets</h2>
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| − | <p>some text</p>
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| − | <h2>C5: GO gene sets</h2>
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| − | <p>some text</p>
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| − | <h2>C6: oncogenetic signatures</h2>
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| − | <p>some text</p>
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| − | <h2>C7: immunologic signatures</h2>
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| − | <p>some text</p>
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