Difference between revisions of "Main Page"

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<h1><a name="_Toc127331825">Heading 1</a></h1>
+
This is a test.<br />* a bullet<br />** a nested bullet<br /><br />This is a test of the editor:<br />
<p style="" class="MsoNormal">Format for body text: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place></p>
 
<p style="" class="MsoNormal">Format for headings (examples of each follow):</p>
 
 
<ul>
 
<ul>
     <li><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">* <span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"></span></span><!--[endif]-->Heading 1</span></li>
+
     <li>a bullet</li>
    <li><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">* </span></span><!--[endif]-->Heading 2</li>
+
</ul>
     <li><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">* </span></span><!--[endif]-->Heading 3</li>
+
<ul>
 +
    <ul>
 +
        <li>a nested bullet</li>
 +
     </ul>
 
</ul>
 
</ul>
<h2><a name="_Toc127331826"></a><a name="_Installing_GenePattern"></a><span style="">Heading 2</span></h2>
 
<p class="MsoNormal"><st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place> for body text. Body text When you install GenePattern, you typically install all three components: the server, Java Client, and Web Client. GenePattern can be run standalone, or separated into its client and server components to take advantage of a more powerful compute server. A single installer works for either local or distributed configurations.</p>
 
<h3><a name="_Toc127331827"></a><a name="_Starting_the_GenePattern_Java Clien"></a><a name="_Exiting_from_GenePattern"></a><span style="">Heading 3</span></h3>
 
<p class="MsoNormal"><st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place> for body text. </p>
 
<h4>Heading 4</h4>
 
<p class="MsoNormal">Rarely used, but should be supported.</p>
 
<h1><a name="_Toc127331828">Bulleted and Numbered Lists</a></h1>
 
<p class="MsoNormal">For bulleted lists, use</p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">* </span></span><!--[endif]-->List Bullet</p>
 
<p class="MsoListContinue"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">* </span></span><!--[endif]-->List Bullet&lt;br&gt;&lt;br&gt;List Continue</p>
 
<p class="MsoListBullet2"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">** </span></span><!--[endif]-->List Bullet 2</p>
 
<p class="MsoListContinue2"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">** </span></span><!--[endif]-->List Bullet 2&lt;br&gt;&lt;br&gt;List Continue 2</p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">* </span></span><!--[endif]-->List Bullet</p>
 
<p class="MsoNormal">For numbered lists, use:</p>
 
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 
<p class="MsoListContinue">List Continue</p>
 
<p class="MsoListNumber2"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2</p>
 
<p class="MsoListNumber2"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2</p>
 
<p class="MsoListContinue2">List Continue 2</p>
 
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">3.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 
<p class="MsoListNumber2" style=""><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2.</p>
 
<p class="MsoListNumber2" style=""><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2.</p>
 
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">4.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 
<p class="MsoNormal">Numbered and bulleted lists can be mixed:</p>
 
<p class="MsoListNumber" style=""><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number:</p>
 
<p class="MsoListBullet2"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->List Bullet 2</p>
 
<p class="MsoListContinue2">List Continue 2</p>
 
<p class="MsoListBullet2"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->List Bullet 2</p>
 
<p class="MsoListContinue2">List Continue 2</p>
 
<p class="MsoListNumber" style=""><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 
<p class="MsoListNumber2" style=""><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2</p>
 
<p class="MsoListNumber2"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2</p>
 
<p class="MsoListContinue2">List Continue 2</p>
 
<p class="MsoListNumber" style=""><!--[if !supportLists]--><span style="">3.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 
<h1><a name="_Toc127331829"></a><a name="_Getting_Help"></a><span style="">Text Formats</span></h1>
 
<p class="MsoNormal">Within paragraph text, we use a number of character formats:</p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->Hyperlinks: <span class="MsoHyperlink">hyperlink</span></p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span class="brcode"><span style="font-size: 10pt; font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span></span><!--[endif]-->Code and file names: <span class="brcode"><span style="font-size: 10pt;">br_code<o:p></o:p></span></span></p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span class="brGUI"><span style="font-family: Symbol; font-style: normal;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span></span><!--[endif]-->For GUI items, like menus and buttons: <span class="brGUI">br_GUI</span><span class="brGUI"><span style="font-style: normal;"><o:p></o:p></span></span></p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->For menus, we use angle brackets, which need to be preserved: <span class="brGUI">File&gt;Open</span>. </p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span class="brvariable"><span style="font-family: Symbol; font-style: normal; text-decoration: none;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span></span><!--[endif]-->For variables (this looks the same as GUI, but might in the future): <span class="brvariable">br_variable</span><span class="brvariable"><span style="font-style: normal;"><o:p></o:p></span></span></p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->For various reasons, most formats can be bold. So bold needs to be preserved.</p>
 
<p class="MsoListContinue">Normal formats: <st1:city w:st="on"><st1:place w:st="on">Normal</st1:place></st1:city>, <span class="brcode"><span style="font-size: 10pt;">br_code, </span></span><span class="brGUI">br_GUI, </span><span class="brvariable">br_variable<o:p></o:p></span></p>
 
<p class="MsoListContinue">Bold formats: <st1:city w:st="on"><st1:place w:st="on"><strong style="">Normal</strong></st1:place></st1:city><strong style="">, </strong><span class="brcode"><strong style=""><span style="font-size: 10pt;">br_code, </span></strong></span><span class="brGUI"><strong>br_GUI, </strong></span><span class="brvariable"><strong>br_variable</strong><o:p></o:p></span></p>
 
<h1><a name="_Toc127331830"></a><a name="_Working_with_Projects"></a><span style="">Header and Footer</span></h1>
 
<p class="MsoNormal">The headers and footers would normally come over to html, but just for completeness, those formats would be</p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->Header: <span class="HeaderChar">header text</span></p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span class="FooterChar"><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span></span><!--[endif]-->Footer: <span class="FooterChar">footer text<o:p></o:p></span></p>
 
<h1><a name="_Toc127331831">Tables and Graphics</a></h1>
 
<p class="MsoNormal">Tables need to come over cleanly. It&rsquo;s hard to capture all formats, but here&rsquo;s a basic table:</p>
 
<table cellspacing="0" cellpadding="0" border="1" class="MsoTableGrid" style="border: medium none ; border-collapse: collapse;">
 
    <tbody>
 
        <tr style="">
 
            <td width="319" valign="top" style="border: 1pt solid windowtext; padding: 0in 5.4pt; width: 239.4pt;">
 
            <p class="MsoNormal"><strong style="">Column Header<o:p></o:p></strong></p>
 
            </td>
 
            <td width="319" valign="top" style="border-style: solid solid solid none; border-color: windowtext windowtext windowtext -moz-use-text-color; border-width: 1pt 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 
            <p class="MsoNormal"><strong style="">Column Header<o:p></o:p></strong></p>
 
            </td>
 
        </tr>
 
        <tr style="">
 
            <td width="319" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 239.4pt;">
 
            <p class="MsoNormal">Blah, blah, blah.</p>
 
            <p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span></span><!--[endif]-->Bulleted stuff, stuff, stuff.</p>
 
            <p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span></span><!--[endif]-->Stuff, stuff, stuff.</p>
 
            </td>
 
            <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 
            <p class="MsoNormal">Blah, blah, blah.</p>
 
            <p class="MsoListNumber" style=""><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span><!--[endif]-->Numbered stuff, stuff, stuff.</p>
 
            <p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->Stuff,  stuff, stuff.</p>
 
            </td>
 
        </tr>
 
        <tr style="">
 
            <td width="319" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 239.4pt;">
 
            <p class="MsoNormal">Blah, blah, blah.</p>
 
            </td>
 
            <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 
            <p class="MsoNormal">Blah, blah, blah.</p>
 
            </td>
 
        </tr>
 
    </tbody>
 
</table>
 
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
 
<p class="MsoNormal">In Word, graphics are linked in files. They also need to come over:</p>
 
<p class="MsoNormal"><!--[if gte vml 1]><v:shapetype id="_x0000_t75" coordsize="21600,21600"
 
o:spt="75" o:preferrelative="t" path="m@4@5l@4@11@9@11@9@5xe" filled="f"
 
stroked="f">
 
<v:stroke joinstyle="miter" />
 
<v:formulas>
 
<v:f eqn="if lineDrawn pixelLineWidth 0" />
 
<v:f eqn="sum @0 1 0" />
 
<v:f eqn="sum 0 0 @1" />
 
<v:f eqn="prod @2 1 2" />
 
<v:f eqn="prod @3 21600 pixelWidth" />
 
<v:f eqn="prod @3 21600 pixelHeight" />
 
<v:f eqn="sum @0 0 1" />
 
<v:f eqn="prod @6 1 2" />
 
<v:f eqn="prod @7 21600 pixelWidth" />
 
<v:f eqn="sum @8 21600 0" />
 
<v:f eqn="prod @7 21600 pixelHeight" />
 
<v:f eqn="sum @10 21600 0" />
 
</v:formulas>
 
<v:path o:extrusionok="f" gradientshapeok="t" o:connecttype="rect" />
 
<o:lock v:ext="edit" aspectratio="t" />
 
</v:shapetype><v:shape id="_x0000_i1025" type="#_x0000_t75" style='width:14.25pt;
 
height:14.25pt'>
 
<v:imagedata src="file:///C:\DOCUME~1\hkuehn\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
o:href="images/icon-file-res.gif" />
 
</v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:%5CDOCUME~1%5Chkuehn%5CLOCALS~1%5CTemp%5Cmsohtml1%5C01%5Cclip_image001.gif" v:shapes="_x0000_i1025" /><!--[endif]--></p>
 
<p class="MsoNormal">In rare cases, graphics appear in tables. Here&rsquo;s an example:</p>
 
<table cellspacing="0" cellpadding="0" border="1" class="MsoTableGrid" style="border: medium none ; margin-left: 5.4pt; border-collapse: collapse;">
 
    <tbody>
 
        <tr style="">
 
            <td width="72" valign="top" style="border: 1pt solid windowtext; padding: 0in 5.4pt; width: 0.75in;">
 
            <p class="MsoNormal"><!--[if gte vml 1]><v:shape id="_x0000_i1026" type="#_x0000_t75"
 
            style='width:14.25pt;height:14.25pt'>
 
            <v:imagedata src="file:///C:\DOCUME~1\hkuehn\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
            o:href="images/icon-file-res.gif" />
 
            </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:%5CDOCUME~1%5Chkuehn%5CLOCALS~1%5CTemp%5Cmsohtml1%5C01%5Cclip_image001.gif" v:shapes="_x0000_i1026" /><!--[endif]--></p>
 
            </td>
 
            <td width="559" valign="top" style="border-style: solid solid solid none; border-color: windowtext windowtext windowtext -moz-use-text-color; border-width: 1pt 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
            <p class="MsoNormal">Expression dataset (res) </p>
 
            </td>
 
        </tr>
 
        <tr style="">
 
            <td width="72" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 0.75in;">
 
            <p class="MsoNormal"><!--[if gte vml 1]><v:shape id="_x0000_i1027" type="#_x0000_t75"
 
            style='width:14.25pt;height:14.25pt'>
 
            <v:imagedata src="file:///C:\DOCUME~1\hkuehn\LOCALS~1\Temp\msohtml1\01\clip_image002.gif"
 
            o:href="images/icon-file-gct.gif" />
 
            </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:%5CDOCUME~1%5Chkuehn%5CLOCALS~1%5CTemp%5Cmsohtml1%5C01%5Cclip_image002.gif" v:shapes="_x0000_i1027" /><!--[endif]--></p>
 
            </td>
 
            <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
            <p class="MsoNormal">Expression dataset (gct)</p>
 
            </td>
 
        </tr>
 
        <tr style="">
 
            <td width="72" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 0.75in;">
 
            <p class="MsoNormal"><!--[if gte vml 1]><v:shape id="_x0000_i1028" type="#_x0000_t75"
 
            style='width:13.5pt;height:13.5pt'>
 
            <v:imagedata src="file:///C:\DOCUME~1\hkuehn\LOCALS~1\Temp\msohtml1\01\clip_image003.gif"
 
            o:href="images/icon-file-pcl.gif" />
 
            </v:shape><![endif]--><!--[if !vml]--><img width="18" height="18" alt="" src="file:///C:%5CDOCUME~1%5Chkuehn%5CLOCALS~1%5CTemp%5Cmsohtml1%5C01%5Cclip_image003.gif" v:shapes="_x0000_i1028" /><!--[endif]--></p>
 
            </td>
 
            <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
            <p class="MsoNormal">Expression dataset (pcl)</p>
 
            </td>
 
        </tr>
 
    </tbody>
 
</table>
 
<h1><a name="_Toc127331832">Content</a></h1>
 
<p class="MsoNormal">The introduction to each section that has subsections, should provide hyperlinks to the subsections. </p>
 
<p class="MsoNormal">This section describes how to work with project directories in GenePattern:</p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><a href="#_Opening_a_Project_Directory">Projects Pane</a></p>
 
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a></p>
 
<h2><a name="_Toc127331833"></a><a name="_Opening_a_Project_Directory"></a><a name="_Projects_Pane"></a><span style="">Projects Pane</span></h2>
 
<p class="MsoNormal">Blah, blah, blah.</p>
 
<h2><a name="_Toc127331834"></a><a name="_Opening_a_Project_Directory_1"></a><span style="">Opening a Project Directory</span></h2>
 
<p class="MsoNormal">Blah, blah, blah.</p>
 

Revision as of 11:15, 21 March 2006

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