Difference between revisions of "Main Page"

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This is a test.<br />* a bullet<br />** a nested bullet<br /><br />This is a test of the editor:<br />
+
<h1><a name="_Toc127331830">Header and Footer</a></h1>
−
<ul>
+
<p class="MsoNormal">The headers and footers would normally come over to html, but just for completeness, those formats would be</p>
−
     <li>a bullet</li>
+
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->Header: <span class="HeaderChar">header text</span></p>
−
</ul>
+
<p class="MsoListBullet"><!--[if !supportLists]--><span class="FooterChar"><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span></span><!--[endif]-->Footer: <span class="FooterChar">footer text<o:p></o:p></span></p>
−
<ul>
+
<h1><a name="_Toc127331831">Tables and Graphics</a></h1>
−
    <ul>
+
<p class="MsoNormal">Tables need to come over cleanly. It&rsquo;s hard to capture all formats, but here&rsquo;s a basic table:</p>
−
         <li>a nested bullet</li>
+
<table cellspacing="0" cellpadding="0" border="1" style="border: medium none ; border-collapse: collapse;" class="MsoTableGrid">
−
    </ul>
+
     <tbody>
−
</ul>
+
        <tr style="">
−
<br /><br /><span style="color: rgb(255, 0, 0);">gfsdgsdgsfd<br /><br /><br /><br /><br /></span>
+
            <td width="319" valign="top" style="border: 1pt solid windowtext; padding: 0in 5.4pt; width: 239.4pt;">
−
<ul>
+
            <p class="MsoNormal"><strong style="">Column Header<o:p></o:p></strong></p>
−
     <li>foo</li>
+
            </td>
−
    <li>bar</li>
+
            <td width="319" valign="top" style="border-style: solid solid solid none; border-color: windowtext windowtext windowtext -moz-use-text-color; border-width: 1pt 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
−
    <li>zog</li>
+
            <p class="MsoNormal"><strong style="">Column Header<o:p></o:p></strong></p>
−
</ul>
+
            </td>
 +
        </tr>
 +
         <tr style="">
 +
            <td width="319" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 239.4pt;">
 +
            <p class="MsoNormal">Blah, blah, blah.</p>
 +
            <p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span></span><!--[endif]-->Bulleted stuff, stuff, stuff.</p>
 +
            <p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span></span><!--[endif]-->Stuff, stuff, stuff.</p>
 +
            </td>
 +
            <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 +
            <p class="MsoNormal">Blah, blah, blah.</p>
 +
            <p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span><!--[endif]-->Numbered stuff, stuff, stuff.</p>
 +
            <p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->Stuff,  stuff, stuff.</p>
 +
            </td>
 +
        </tr>
 +
        <tr style="">
 +
            <td width="319" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 239.4pt;">
 +
            <p class="MsoNormal">Blah, blah, blah.</p>
 +
            </td>
 +
            <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 +
            <p class="MsoNormal">Blah, blah, blah.</p>
 +
            </td>
 +
        </tr>
 +
    </tbody>
 +
</table>
 +
<p class="MsoNormal"><o:p>&nbsp;</o:p></p>
 +
<p class="MsoNormal">In Word, graphics are linked in files. They also need to come over:</p>
 +
<p class="MsoNormal"><!--[if gte vml 1]><v:shapetype id="_x0000_t75" coordsize="21600,21600"
 +
o:spt="75" o:preferrelative="t" path="m@4@5l@4@11@9@11@9@5xe" filled="f"
 +
stroked="f">
 +
<v:stroke joinstyle="miter" />
 +
<v:formulas>
 +
<v:f eqn="if lineDrawn pixelLineWidth 0" />
 +
<v:f eqn="sum @0 1 0" />
 +
<v:f eqn="sum 0 0 @1" />
 +
<v:f eqn="prod @2 1 2" />
 +
<v:f eqn="prod @3 21600 pixelWidth" />
 +
<v:f eqn="prod @3 21600 pixelHeight" />
 +
<v:f eqn="sum @0 0 1" />
 +
<v:f eqn="prod @6 1 2" />
 +
<v:f eqn="prod @7 21600 pixelWidth" />
 +
<v:f eqn="sum @8 21600 0" />
 +
<v:f eqn="prod @7 21600 pixelHeight" />
 +
<v:f eqn="sum @10 21600 0" />
 +
</v:formulas>
 +
<v:path o:extrusionok="f" gradientshapeok="t" o:connecttype="rect" />
 +
<o:lock v:ext="edit" aspectratio="t" />
 +
</v:shapetype><v:shape id="_x0000_i1025" type="#_x0000_t75" style='width:14.25pt;
 +
height:14.25pt'>
 +
<v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 +
o:href="images/icon-file-res.gif" />
 +
</v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1025" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" /><!--[endif]--></p>
 +
<p class="MsoNormal">In rare cases, graphics appear in tables. Here&rsquo;s an example:</p>
 +
<table cellspacing="0" cellpadding="0" border="1" style="border: medium none ; margin-left: 5.4pt; border-collapse: collapse;" class="MsoTableGrid">
 +
    <tbody>
 +
        <tr style="">
 +
            <td width="72" valign="top" style="border: 1pt solid windowtext; padding: 0in 5.4pt; width: 0.75in;">
 +
            <p class="MsoNormal"><!--[if gte vml 1]><v:shape id="_x0000_i1026" type="#_x0000_t75"
 +
            style='width:14.25pt;height:14.25pt'>
 +
            <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 +
            o:href="images/icon-file-res.gif" />
 +
            </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1026" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" /><!--[endif]--></p>
 +
            </td>
 +
            <td width="559" valign="top" style="border-style: solid solid solid none; border-color: windowtext windowtext windowtext -moz-use-text-color; border-width: 1pt 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 +
            <p class="MsoNormal">Expression dataset (res) </p>
 +
            </td>
 +
        </tr>
 +
        <tr style="">
 +
            <td width="72" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 0.75in;">
 +
            <p class="MsoNormal"><!--[if gte vml 1]><v:shape id="_x0000_i1027" type="#_x0000_t75"
 +
            style='width:14.25pt;height:14.25pt'>
 +
            <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image002.gif"
 +
            o:href="images/icon-file-gct.gif" />
 +
            </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1027" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" alt="" /><!--[endif]--></p>
 +
            </td>
 +
            <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 +
            <p class="MsoNormal">Expression dataset (gct)</p>
 +
            </td>
 +
        </tr>
 +
        <tr style="">
 +
            <td width="72" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 0.75in;">
 +
            <p class="MsoNormal"><!--[if gte vml 1]><v:shape id="_x0000_i1028" type="#_x0000_t75"
 +
            style='width:13.5pt;height:13.5pt'>
 +
            <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image003.gif"
 +
            o:href="images/icon-file-pcl.gif" />
 +
            </v:shape><![endif]--><!--[if !vml]--><img width="18" height="18" v:shapes="_x0000_i1028" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" alt="" /><!--[endif]--></p>
 +
            </td>
 +
            <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 +
            <p class="MsoNormal">Expression dataset (pcl)</p>
 +
            </td>
 +
        </tr>
 +
     </tbody>
 +
</table>
 +
<h1><a name="_Toc127331832">Content</a></h1>
 +
<p class="MsoNormal">The introduction to each section that has subsections, should provide hyperlinks to the subsections. </p>
 +
<p class="MsoNormal">This section describes how to work with project directories in GenePattern:</p>
 +
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><a href="#_Opening_a_Project_Directory">Projects Pane</a></p>
 +
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a></p>

Revision as of 11:36, 21 March 2006

<a name="_Toc127331830">Header and Footer</a>

The headers and footers would normally come over to html, but just for completeness, those formats would be

·         Header: header text

·         Footer: footer text<o:p></o:p>

<a name="_Toc127331831">Tables and Graphics</a>

Tables need to come over cleanly. It’s hard to capture all formats, but here’s a basic table:

<tbody> </tbody>

Column Header<o:p></o:p>

Column Header<o:p></o:p>

Blah, blah, blah.

·         Bulleted stuff, stuff, stuff.

·         Stuff, stuff, stuff.

Blah, blah, blah.

1.      Numbered stuff, stuff, stuff.

2.      Stuff, stuff, stuff.

Blah, blah, blah.

Blah, blah, blah.

<o:p> </o:p>

In Word, graphics are linked in files. They also need to come over:

<img width="19" height="19" v:shapes="_x0000_i1025" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" />

In rare cases, graphics appear in tables. Here’s an example:

<tbody> </tbody>

<img width="19" height="19" v:shapes="_x0000_i1026" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" />

Expression dataset (res)

<img width="19" height="19" v:shapes="_x0000_i1027" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" alt="" />

Expression dataset (gct)

<img width="18" height="18" v:shapes="_x0000_i1028" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" alt="" />

Expression dataset (pcl)

<a name="_Toc127331832">Content</a>

The introduction to each section that has subsections, should provide hyperlinks to the subsections.

This section describes how to work with project directories in GenePattern:

·         <a href="#_Opening_a_Project_Directory">Projects Pane</a>

·         <a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a>

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