Difference between revisions of "Context sensitive help pages"
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<div style="text-align: left;">This is a listing of the context sensitive help buttons needed.<br /><br />1) Create a page in the Wiki named the same as the code key<br />2) Fill it with relevant content even if its a duplication (orcondensed form) of user manual content.<br />3) Do <span style="font-weight: bold;">not </span>add these pages to the navigation menu<br /><br /><br /><br /> | <div style="text-align: left;">This is a listing of the context sensitive help buttons needed.<br /><br />1) Create a page in the Wiki named the same as the code key<br />2) Fill it with relevant content even if its a duplication (orcondensed form) of user manual content.<br />3) Do <span style="font-weight: bold;">not </span>add these pages to the navigation menu<br /><br /><br /><br /> | ||
| − | <table cellspacing="1" cellpadding="1" border="1" align="" style="width: 735px; height: 818px; | + | <table cellspacing="1" cellpadding="1" border="1" align="" summary="" style="width: 735px; height: 818px;"> |
<tbody> | <tbody> | ||
<tr> | <tr> | ||
| Line 85: | Line 85: | ||
<td>xtools.gsea.Gsea</td> | <td>xtools.gsea.Gsea</td> | ||
<td>help for the gsea tool<br /></td> | <td>help for the gsea tool<br /></td> | ||
| − | <td> </td> | + | <td> GSEAUserGuide.htm#_Run_GSEA_Page</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>xtools.gsea.GseaPreranked</td> | <td>xtools.gsea.GseaPreranked</td> | ||
<td> help for the gsea preranked tool<br /></td> | <td> help for the gsea preranked tool<br /></td> | ||
| − | <td> </td> | + | <td> GSEAUserGuide.htm#_Toc131302100</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>xtools.munge.CollapseDataset <br /></td> | <td>xtools.munge.CollapseDataset <br /></td> | ||
<td>help for the collapse dataset tool <br /></td> | <td>help for the collapse dataset tool <br /></td> | ||
| − | <td> </td> | + | <td> GSEAUserGuide.htm#_Toc131302101</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>xtools.chip2chip.Chip2Chip <br /></td> | <td>xtools.chip2chip.Chip2Chip <br /></td> | ||
<td>help for the chip2 chip tool <br /></td> | <td>help for the chip2 chip tool <br /></td> | ||
| − | <td> </td> | + | <td> GSEAUserGuide.htm#_Toc131302097</td> |
</tr> | </tr> | ||
</tbody> | </tbody> | ||
| Line 107: | Line 107: | ||
<h2>Help pages for common error messages</h2> | <h2>Help pages for common error messages</h2> | ||
<br /><br /> | <br /><br /> | ||
| − | <table cellspacing="1" cellpadding="1" border="1" align | + | <table cellspacing="1" cellpadding="1" border="1" align="" style="width: 702px; height: 263px;" summary=""> |
<tbody> | <tbody> | ||
<tr> | <tr> | ||
Revision as of 12:28, 31 March 2006
This is a listing of the context sensitive help buttons needed.
1) Create a page in the Wiki named the same as the code key
2) Fill it with relevant content even if its a duplication (orcondensed form) of user manual content.
3) Do not add these pages to the navigation menu
<tbody> </tbody>
1) Create a page in the Wiki named the same as the code key
2) Fill it with relevant content even if its a duplication (orcondensed form) of user manual content.
3) Do not add these pages to the navigation menu
<tbody> </tbody>
| CODE KEY | DESCRIPTION | ENTER URL AFTER CREATING |
| chip | meaning of the chip parameter | |
| chip_target |
meaning of the chip_target parameter | |
| chip_source | meaning of the chip_source parameter | |
| grp | meaning of the grp parameter |
|
| res | meaning of the res parameter |
|
| gmx | meaning of the gmx parameter |
|
| cls | meaning of the cls parameter |
|
| on_the_fly_phenotype | ctx help for the on the fly template chooser |
|
| gene_profile_phenotype | ctx help for the gene profile chooser |
|
| gsea_preferences_widget |
ctx help for gsea prefs screen |
|
| post_hoc |
main help the leadingf edge screen |
|
| msigdb_browser |
main help for the gene sets browser |
|
| xtools.gsea.Gsea | help for the gsea tool |
GSEAUserGuide.htm#_Run_GSEA_Page |
| xtools.gsea.GseaPreranked | help for the gsea preranked tool |
GSEAUserGuide.htm#_Toc131302100 |
| xtools.munge.CollapseDataset |
help for the collapse dataset tool |
GSEAUserGuide.htm#_Toc131302101 |
| xtools.chip2chip.Chip2Chip |
help for the chip2 chip tool |
GSEAUserGuide.htm#_Toc131302097 |
Help pages for common error messages
| ERROR CODE # |
DESCRIPTION | ENTER URL AFTER CREATING |
| error_1001 | None of the gene sets passed the size thresholds | |
| error_1002 |
Chip parameter must be specified as you asked to analyze in the space of gene symbols. Chip is used to collapse probes into symbols. |
Suggestions: Analyze in gene symbol space on: Pick the chip that corresponds to probe identifiers used in your expression dataset. This chip annotation will be used to automatically map your dataset into gene symbols Analyze in native space: You no longer will be required to enter a chip parameter. Use this option only if your dataset and gene sets already match (i.e no symbol conversions will be done) |
| error_1010 | As the phenotype choosen was categorical, only categorical metrics are allowed. Got: " + metric.getName(), 1010 |
list of categ metrics from the chooser |
| error_1011 | As the phenotype choosen was continuous, only continuous metrics are allowed. Got: " + metric.getName(), 1010 |
list of cont metrics from the chooser |
