Difference between revisions of "Msigdb dtd"
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− | <pre>--></pre> | + | <pre><!-- <?xml version="1.0" encoding="UTF-8"?> --> <br /><!-- <!-- --> <br /><!-- This is the DTD for MSigDB.--><br /><!-- It describes a format for a database of gene sets that captures --><br /><!-- both the content of a gene set (i.e gene members) as well as annotation about --><br /><!-- the gene set. --><br /><!-- @VERSION 1.0 May 2006 --> <br /><!-- @AUTHOR Aravind Subramanian --><br /><!-- --> --><br /><!-- <!DOCTYPE MSIGDB [ --><br /><!-- <!ELEMENT MSIGDB GENESET* -- top level container --><br /><!-- <!ATTLIST MSIGDB<br /><!-- NAME CDATA #REQUIRED -- name of the database<br /><!-- VERSION CDATA #REQUIRED -- version of the database<br /><!-- ><br /><!-- <br /><!-- <!ELEMENT GENESET -- a single gene set --><br /><!-- <!ATTLIST GENESET<br /><!-- STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br /><!-- SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br /><!-- ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br /><!-- EXTERNAL_DETAILS_URL CDATA -- 3rd party url for more info<br /><!-- CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br /><!-- CATEGORY_CODE CDATA (C1|C2|C3|C4)<br /><!-- SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br /><!-- CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br /><!-- PMID CDATA -- PubMed ID if available<br /><!-- GEOID CDATA -- GEO ID if available<br /><!-- DESCRIPTION CDATA -- a full detailed desc or abstract<br /><!-- DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br /><!-- %MESH CDATA -- keywords and MESH identifiers<br /><!-- %MEMBERS CDATA #REQUIRED -- Genes in the native format<br /><!-- %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols<br /><!-- ><br /><!-- ]></pre> |
Revision as of 11:44, 24 March 2006
<!-- <?xml version="1.0" encoding="UTF-8"?> --> <br /><!-- <!-- --> <br /><!-- This is the DTD for MSigDB.--><br /><!-- It describes a format for a database of gene sets that captures --><br /><!-- both the content of a gene set (i.e gene members) as well as annotation about --><br /><!-- the gene set. --><br /><!-- @VERSION 1.0 May 2006 --> <br /><!-- @AUTHOR Aravind Subramanian --><br /><!-- --> --><br /><!-- <!DOCTYPE MSIGDB [ --><br /><!-- <!ELEMENT MSIGDB GENESET* -- top level container --><br /><!-- <!ATTLIST MSIGDB<br /><!-- NAME CDATA #REQUIRED -- name of the database<br /><!-- VERSION CDATA #REQUIRED -- version of the database<br /><!-- ><br /><!-- <br /><!-- <!ELEMENT GENESET -- a single gene set --><br /><!-- <!ATTLIST GENESET<br /><!-- STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br /><!-- SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br /><!-- ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br /><!-- EXTERNAL_DETAILS_URL CDATA -- 3rd party url for more info<br /><!-- CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br /><!-- CATEGORY_CODE CDATA (C1|C2|C3|C4)<br /><!-- SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br /><!-- CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br /><!-- PMID CDATA -- PubMed ID if available<br /><!-- GEOID CDATA -- GEO ID if available<br /><!-- DESCRIPTION CDATA -- a full detailed desc or abstract<br /><!-- DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br /><!-- %MESH CDATA -- keywords and MESH identifiers<br /><!-- %MEMBERS CDATA #REQUIRED -- Genes in the native format<br /><!-- %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols<br /><!-- ><br /><!-- ]>