Difference between revisions of "Msigdb dtd"

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<br /><span style="font-weight: bold;">Note</span>: To include the dtd in Wiki, the angle brackets were removed.<br />
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<pre>xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot;<br /><br />    This is the DTD for MSigDB.<br /> It describes a format for a database of gene sets that captures<br /> both the content of a gene set (i.e gene members) as well as annotation about<br /> the gene set.<br /> @VERSION 1.0 May 2006<br /> @AUTHOR Aravind Subramanian<br /><br />DOCTYPE MSIGDB <br />ELEMENT MSIGDB GENESET*          -- top level container<br />ATTLIST MSIGDB<br />  NAME CDATA #REQUIRED -- name of the database<br />  VERSION CDATA #REQUIRED -- version of the database<br /><br /><br />ELEMENT GENESET                  -- a single gene set<br />ATTLIST GENESET<br /> STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br /> SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br /> ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br /> EXTERNAL_DETAILS_URL CDATA             -- 3rd party url for more info<br /> CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br /> CATEGORY_CODE CDATA (C1|C2|C3|C4)<br /> SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br /> CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br /> PMID CDATA -- PubMed ID if available<br /> GEOID CDATA -- GEO ID if available<br /> DESCRIPTION CDATA -- a full detailed desc or abstract<br /> DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br /> %MESH CDATA -- keywords and MESH identifiers<br /> %MEMBERS CDATA #REQUIRED -- Genes in the native format<br /> %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols<br /><br /></pre>
 
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<pre><!--  &lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot;?&gt; -->          <br /><!--  &lt;!-- -->    <br /><!--      This is the DTD for MSigDB.--><br /><!--  It describes a format for a database of gene sets that captures --><br /><!--  both the content of a gene set (i.e gene members) as well as annotation about --><br /><!--  the gene set. --><br /><!--  @VERSION 1.0 May 2006  --> <br /><!--  @AUTHOR Aravind Subramanian  --><br /><!--  -->  --&gt;<br /><!--  &lt;!DOCTYPE MSIGDB [  --><br /><!--  &lt;!ELEMENT MSIGDB GENESET*          -- top level container --><br /><!--  &lt;!ATTLIST MSIGDB<br />&lt;!--    NAME CDATA #REQUIRED -- name of the database<br />&lt;!--    VERSION CDATA #REQUIRED -- version of the database<br />&lt;!--  &gt;<br />&lt;!--  <br />&lt;!--  &lt;!ELEMENT GENESET                  -- a single gene set --><br />&lt;!--  &lt;!ATTLIST GENESET<br />&lt;!--  STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br />&lt;!--  SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br />&lt;!--  ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br />&lt;!--  EXTERNAL_DETAILS_URL CDATA             -- 3rd party url for more info<br />&lt;!--  CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br />&lt;!--  CATEGORY_CODE CDATA (C1|C2|C3|C4)<br />&lt;!--  SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br />&lt;!--  CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br />&lt;!--  PMID CDATA -- PubMed ID if available<br />&lt;!--  GEOID CDATA -- GEO ID if available<br />&lt;!--  DESCRIPTION CDATA -- a full detailed desc or abstract<br />&lt;!--  DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br />&lt;!--  %MESH CDATA -- keywords and MESH identifiers<br />&lt;!--  %MEMBERS CDATA #REQUIRED -- Genes in the native format<br />&lt;!--  %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols<br />&lt;!--  &gt;<br />&lt;!--  ]&gt;</pre>
 

Revision as of 11:47, 24 March 2006


Note: To include the dtd in Wiki, the angle brackets were removed.

xml version="1.0" encoding="UTF-8"<br /><br />    	This is the DTD for MSigDB.<br />	It describes a format for a database of gene sets that captures<br />	both the content of a gene set (i.e gene members) as well as annotation about<br />	the gene set.<br />	@VERSION 1.0 May 2006<br />	@AUTHOR Aravind Subramanian<br /><br />DOCTYPE MSIGDB <br />ELEMENT MSIGDB GENESET*          	-- top level container<br />ATTLIST MSIGDB<br />  	NAME	CDATA	#REQUIRED	-- name of the database<br />  	VERSION	CDATA	#REQUIRED	-- version of the database<br /><br /><br />ELEMENT GENESET                  	-- a single gene set<br />ATTLIST GENESET<br />	STANDARD_NAME		CDATA	#REQUIRED	-- an english name for the gene set<br />	SYSTEMATIC_NAME		CDATA	#REQUIRED	-- a systematized identifier<br />	ORGANISM		CDATA	#REQUIRED	-- organism in which the geneset was generated<br />	EXTERNAL_DETAILS_URL	CDATA	    	        -- 3rd party url for more info<br />	CHIP			CDATA	#REQUIRED	-- platform on which the geneset was generated<br />	CATEGORY_CODE		CDATA	(C1|C2|C3|C4)<br />	SUB_CATEGORY_CODE	CDATA	(CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH)	<br />	CONTRIBUTOR		CDATA	#REQUIRED	-- name of person/database that curated the set<br />	PMID			CDATA			-- PubMed ID if available<br />	GEOID			CDATA			-- GEO ID if available<br />	DESCRIPTION		CDATA			-- a full detailed desc or abstract<br />	DESCRIPTION_BRIEF	CDATA	#REQUIRED	-- a brief 1 line description<br />	%MESH			CDATA			-- keywords and MESH identifiers<br />	%MEMBERS		CDATA	#REQUIRED	-- Genes in the native format<br />	%MEMBERS_SYMBOLIZED	CDATA	#REQUIRED	-- Genes after converting to gene symbols<br /><br />