Difference between revisions of "MSigDB XML description"
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| − | < | + | MSigDB database in XML format captures both the content (i.e., gene members) and annotation about the gene sets in MSigDB. Here we describe the tags and attributes of the XML file. |
| + | |||
| + | database tags and attributes (applies to all gene sets in the file) | ||
| + | |||
| + | <table> | ||
| + | <tr><td>xml tag</td><td>description</td></tr> | ||
| + | <tr><td>MSIGDB NAME</td><td>name of the database</td></tr> | ||
| + | </table> | ||
| + | |||
| + | {| class="wikitable" | ||
| + | | - | ||
| + | ! xml tag | ||
| + | ! description | ||
| + | |- | ||
| + | |MSIGDB NAME | ||
| + | |name of the database | ||
| + | |- | ||
| + | |VERSION | ||
| + | | version of the database | ||
| + | |- | ||
| + | | BUILD_DATE | ||
| + | |date the XML file has been built | ||
| + | |} | ||
| + | |||
| + | |||
| + | gene set tags and attributes (apply to individual gene sets in the file) | ||
| + | |||
| + | GENE_SET_STANDARD_NAME | ||
Revision as of 13:51, 30 July 2010
MSigDB database in XML format captures both the content (i.e., gene members) and annotation about the gene sets in MSigDB. Here we describe the tags and attributes of the XML file.
database tags and attributes (applies to all gene sets in the file)
| xml tag | description |
| MSIGDB NAME | name of the database |
| - | xml tag | description |
|---|---|---|
| MSIGDB NAME | name of the database | |
| VERSION | version of the database | |
| BUILD_DATE | date the XML file has been built |
gene set tags and attributes (apply to individual gene sets in the file)
GENE_SET_STANDARD_NAME
