Difference between revisions of "MSigDB collections"
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<li>[http://www.genenames.org Human Genome Organization (HUGO) Gene Nomenclature Committee (HGNC)]</li> | <li>[http://www.genenames.org Human Genome Organization (HUGO) Gene Nomenclature Committee (HGNC)]</li> | ||
| + | <li>[http://www.ncbi.nlm.nih.gov/unigene/ UniGene]</li> | ||
| + | <li>[http://www.affymetrix.com Affymetrix] microarray annotations</li> | ||
</ol> | </ol> | ||
Revision as of 16:22, 6 March 2014
<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> |
<a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> |
<a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> |
Documentation |
<a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>
This page provides detailed descriptions of all collections of gene sets in MSigDB.
To learn about changes and other information specific for a particular release of MSigDB, please refer to the corresponding Release_Notes.
Contents
H: Hallmarks
some text
C1: positional gene sets
Genes from the same genomic location (chromosome or cytogenetic band) are grouped in a gene set. Cytogenetic annotations are from three sources:
- Human Genome Organization (HUGO) Gene Nomenclature Committee (HGNC)
- UniGene
- Affymetrix microarray annotations
C2: curated gene sets
some text
C3: motif gene sets
some text
C4:computational gene sets
some text
C5: GO gene sets
some text
C6: oncogenetic signatures
some text
C7: immunologic signatures
some text
