Difference between revisions of "Main Page"

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<h1><a name="_Toc127331830">Header and Footer</a></h1>
 
<h1><a name="_Toc127331830">Header and Footer</a></h1>
 
<h1><a name="_Toc127331825">Heading 1</a></h1>
 
<h1><a name="_Toc127331825">Heading 1</a></h1>
<p style="" class="MsoNormal">Format for body text: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place></p>
+
<p class="MsoNormal" style="">Format for body text: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place></p>
<p style="" class="MsoNormal">Format for headings (examples of each follow):</p>
+
<h1><a name="_Toc127331828">Bulleted and Numbered Lists</a></h1>
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Arial;"><span style="">■<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->Heading 1</p>
+
<p class="MsoNormal">For bulleted lists, use</p>
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Arial;"><span style=""><span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->Heading 2</p>
+
<p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List Bullet</p>
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Arial;"><span style=""><span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->Heading 3</p>
+
<p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List Bullet</p>
<ul>
+
<p class="MsoListContinue" style="margin-left: 40px;">List Continue</p>
    <li><span class="FooterChar"><o:p></o:p></span></li>
+
<p class="MsoListBullet2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">■<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List Bullet 2</p>
</ul>
+
<p class="MsoListBullet2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">■<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List Bullet 2</p>
<h1><a name="_Toc127331831">Tables and Graphics</a></h1>
+
<p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p>
 +
<p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List Bullet</p>
 +
<p class="MsoNormal">For numbered lists, use:</p>
 +
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 +
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 +
<p class="MsoListContinue" style="margin-left: 40px;">List Continue</p>
 +
<p class="MsoListNumber2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2</p>
 +
<p class="MsoListNumber2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2</p>
 +
<p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p>
 +
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">3.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 +
<p style="margin-left: 40px;" class="MsoListNumber2"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2.</p>
 +
<p style="margin-left: 40px;" class="MsoListNumber2"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2.</p>
 +
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">4.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 +
<p class="MsoNormal">Numbered and bulleted lists can be mixed:</p>
 +
<p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number:</p>
 +
<p class="MsoListBullet2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">■<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List Bullet 2</p>
 +
<p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p>
 +
<p class="MsoListBullet2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">■<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List Bullet 2</p>
 +
<p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p>
 +
<p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 +
<p style="margin-left: 40px;" class="MsoListNumber2"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2</p>
 +
<p class="MsoListNumber2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number 2</p>
 +
<p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p>
 +
<p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">3.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->List number.</p>
 
<p class="MsoNormal">Tables need to come over cleanly. It&rsquo;s hard to capture all formats, but here&rsquo;s a basic table:</p>
 
<p class="MsoNormal">Tables need to come over cleanly. It&rsquo;s hard to capture all formats, but here&rsquo;s a basic table:</p>
<table cellspacing="0" cellpadding="0" border="1" class="MsoTableGrid" style="border: medium none ; border-collapse: collapse;">
+
<table cellspacing="0" cellpadding="0" border="1" style="border: medium none ; border-collapse: collapse;" class="MsoTableGrid">
 
     <tbody>
 
     <tbody>
 
         <tr style="">
 
         <tr style="">
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             <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 
             <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 
             <p class="MsoNormal">Blah, blah, blah.</p>
 
             <p class="MsoNormal">Blah, blah, blah.</p>
             <p class="MsoListNumber" style=""><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span><!--[endif]-->Numbered stuff, stuff, stuff.</p>
+
             <p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span><!--[endif]-->Numbered stuff, stuff, stuff.</p>
 
             <p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->Stuff,  stuff, stuff.</p>
 
             <p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->Stuff,  stuff, stuff.</p>
 
             </td>
 
             </td>
Line 71: Line 94:
 
<v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
<v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
o:href="images/icon-file-res.gif" />
 
o:href="images/icon-file-res.gif" />
</v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" v:shapes="_x0000_i1025" /><!--[endif]--></p>
+
</v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1025" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" /><!--[endif]--></p>
 
<p class="MsoNormal">In rare cases, graphics appear in tables. Here&rsquo;s an example:</p>
 
<p class="MsoNormal">In rare cases, graphics appear in tables. Here&rsquo;s an example:</p>
<table cellspacing="0" cellpadding="0" border="1" class="MsoTableGrid" style="border: medium none ; margin-left: 5.4pt; border-collapse: collapse;">
+
<table cellspacing="0" cellpadding="0" border="1" style="border: medium none ; margin-left: 5.4pt; border-collapse: collapse;" class="MsoTableGrid">
 
     <tbody>
 
     <tbody>
 
         <tr style="">
 
         <tr style="">
Line 81: Line 104:
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
             o:href="images/icon-file-res.gif" />
 
             o:href="images/icon-file-res.gif" />
             </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" v:shapes="_x0000_i1026" /><!--[endif]--></p>
+
             </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1026" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" /><!--[endif]--></p>
 
             </td>
 
             </td>
 
             <td width="559" valign="top" style="border-style: solid solid solid none; border-color: windowtext windowtext windowtext -moz-use-text-color; border-width: 1pt 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
             <td width="559" valign="top" style="border-style: solid solid solid none; border-color: windowtext windowtext windowtext -moz-use-text-color; border-width: 1pt 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
Line 93: Line 116:
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image002.gif"
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image002.gif"
 
             o:href="images/icon-file-gct.gif" />
 
             o:href="images/icon-file-gct.gif" />
             </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" v:shapes="_x0000_i1027" /><!--[endif]--></p>
+
             </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1027" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" alt="" /><!--[endif]--></p>
 
             </td>
 
             </td>
 
             <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
             <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
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             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image003.gif"
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image003.gif"
 
             o:href="images/icon-file-pcl.gif" />
 
             o:href="images/icon-file-pcl.gif" />
             </v:shape><![endif]--><!--[if !vml]--><img width="18" height="18" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" v:shapes="_x0000_i1028" /><!--[endif]--></p>
+
             </v:shape><![endif]--><!--[if !vml]--><img width="18" height="18" v:shapes="_x0000_i1028" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" alt="" /><!--[endif]--></p>
 
             </td>
 
             </td>
 
             <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
             <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">

Revision as of 12:17, 21 March 2006

<a name="_Toc127331830">Header and Footer</a>

<a name="_Toc127331825">Heading 1</a>

Format for body text: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>

<a name="_Toc127331828">Bulleted and Numbered Lists</a>

For bulleted lists, use

        List Bullet

        List Bullet

List Continue

        List Bullet 2

        List Bullet 2

List Continue 2

        List Bullet

For numbered lists, use:

1.      List number.

2.      List number.

List Continue

1.      List number 2

2.      List number 2

List Continue 2

3.      List number.

1.      List number 2.

2.      List number 2.

4.      List number.

Numbered and bulleted lists can be mixed:

1.      List number:

        List Bullet 2

List Continue 2

        List Bullet 2

List Continue 2

2.      List number.

1.      List number 2

2.      List number 2

List Continue 2

3.      List number.

Tables need to come over cleanly. It’s hard to capture all formats, but here’s a basic table:

<tbody> </tbody>

Column Header<o:p></o:p>

Column Header<o:p></o:p>

Blah, blah, blah.

  • Bulleted stuff, stuff, stuff.
  • Stuff, stuff, stuff.

Blah, blah, blah.

1.      Numbered stuff, stuff, stuff.

2.      Stuff, stuff, stuff.

Blah, blah, blah.

Blah, blah, blah.

<o:p> </o:p>

In Word, graphics are linked in files. They also need to come over:

<img width="19" height="19" v:shapes="_x0000_i1025" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" />

In rare cases, graphics appear in tables. Here’s an example:

<tbody> </tbody>

<img width="19" height="19" v:shapes="_x0000_i1026" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" />

Expression dataset (res)

<img width="19" height="19" v:shapes="_x0000_i1027" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" alt="" />

Expression dataset (gct)

<img width="18" height="18" v:shapes="_x0000_i1028" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" alt="" />

Expression dataset (pcl)

<a name="_Toc127331832">Content</a>

The introduction to each section that has subsections, should provide hyperlinks to the subsections.

This section describes how to work with project directories in GenePattern:

  • <a href="#_Opening_a_Project_Directory">Projects Pane</a>
  • <a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a>