Difference between revisions of "Main Page"
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<h1><a name="_Toc127331830">Header and Footer</a></h1> | <h1><a name="_Toc127331830">Header and Footer</a></h1> | ||
<h1><a name="_Toc127331825">Heading 1</a></h1> | <h1><a name="_Toc127331825">Heading 1</a></h1> | ||
| − | <p style="" class="MsoNormal"> | + | <p class="MsoNormal" style=""> </p> |
| + | <p class="MsoNormal"> </p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--> </p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For variables (this looks the same as GUI, but might in the future): <span class="brvariable">br_variable<br /></span></p> | ||
| + | <p class="MsoListBullet"> </p> | ||
| + | <p style="" class="MsoNormal">Test: <code><span style="font-size: 10pt;">HTML code</span></code>, <var>HTML variable</var>, plain.<span style=""> </span></p> | ||
| + | <p class="MsoListBullet"><br /><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For variables (this looks the same as GUI, but might in the future): <u>br_variable</u></p> | ||
| + | <p class="MsoNormal"> </p> | ||
| + | <p class="MsoNormal"><span class="brcode"><span style="font-size: 10pt;">java -cp </span></span><span class="brvariable">full-path</span><span class="brcode"><span style="font-size: 10pt;">/gsea.jar -Xmx512m </span></span><span class="brvariable">gsea-tool <span style=""> </span>parameters<br /></span> </p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For variables (this looks the same as GUI, but might in the future): <span class="brvariable">br_variable</span></p> | ||
| + | <p class="MsoNormal"><span class="brcode"><span style="font-size: 10pt;"><o:p></o:p></span></span></p> | ||
| + | <p class="MsoNormal"> </p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For variables (this looks the same as GUI, but might in the future): <u>br_variable</u></p> | ||
| + | <p class="MsoNormal"> </p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For variables (this looks the same as GUI, but might in the future): <span class="brvariable">br_variable</span></p> | ||
| + | <p class="MsoNormal">Plain, <em>emphasis</em>, <span class="brGUI">gui</span>, <em style="">italic</em></p> | ||
| + | <p class="MsoNormal">Within paragraph text, we use a <em style="">number</em> of character formats:</p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->Hyperlinks: <span class="MsoHyperlink">hyperlink</span></p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span class="brcode"><span style="font-size: 10pt; font-family: "Times New Roman";"><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span></span></span><!--[endif]-->Code and file names: <span class="brcode"><span style="font-size: 10pt;">br_code<o:p></o:p></span></span></p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span class="brGUI"><span style="font-style: normal;"><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span></span></span><!--[endif]-->For GUI items, like menus and buttons: <span class="brGUI">br_GUI</span><span class="brGUI"><span style="font-style: normal;"><o:p></o:p></span></span></p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For menus, we use angle brackets, which need to be preserved: <span class="brGUI">File>Open</span>. </p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span class="brvariable"><span style="font-style: normal; text-decoration: none;"><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span></span></span><!--[endif]-->For variables (this looks the same as GUI, but might in the future): <span class="brvariable">br_variable</span><span class="brvariable"><span style="font-style: normal;"><o:p></o:p></span></span></p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For various reasons, most formats can be bold. So bold needs to be preserved.</p> | ||
| + | <p class="MsoListContinue">Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, <span class="brcode"><span style="font-size: 10pt;">br_code, </span></span><span class="brGUI">br_GUI, </span><span class="brvariable">br_variable<o:p></o:p></span></p> | ||
| + | <span style="font-size: 12pt; font-family: "Times New Roman";">Bold formats: <st1:place w:st="on"><st1:city w:st="on"><strong style="">Normal</strong></st1:city></st1:place><strong style="">, </strong></span><span class="brcode"><strong style=""><span style="font-size: 10pt;">br_code, </span></strong></span><span class="brGUI"><strong><span style="font-size: 12pt; font-family: "Times New Roman";">br_GUI, </span></strong></span><span class="brvariable"><strong><span style="font-size: 12pt; font-family: "Times New Roman";">br_variable<span style=""> </span></span></strong></span><br /> | ||
| + | <p class="MsoListContinue"> </p> | ||
| + | <p class="MsoNormal">Within paragraph text, we use a number of character formats:</p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->Hyperlinks: <span class="MsoHyperlink">hyperlink</span></p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span class="brcode"><span style="font-size: 10pt; font-family: "Times New Roman";"><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span></span></span><!--[endif]-->Code and file names: <span class="brcode"><span style="font-size: 10pt;">br_code<o:p></o:p></span></span></p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span class="brGUI"><span style="font-style: normal;"><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span></span></span><!--[endif]-->For GUI items, like menus and buttons: <span class="brGUI">br_GUI</span><span class="brGUI"><span style="font-style: normal;"><o:p></o:p></span></span></p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For menus, we use angle brackets, which need to be preserved: <span class="brGUI">File>Open</span>. </p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span class="brvariable"><span style="font-style: normal; text-decoration: none;"><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span></span></span><!--[endif]-->For variables (this looks the same as GUI, but might in the future): <span class="brvariable">br_variable</span><span class="brvariable"><span style="font-style: normal;"><o:p></o:p></span></span></p> | ||
| + | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->For various reasons, most formats can be bold. So bold needs to be preserved.</p> | ||
| + | <p class="MsoListContinue">Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, <span class="brcode"><span style="font-size: 10pt;">br_code, </span></span><span class="brGUI">br_GUI, </span><span class="brvariable">br_variable<o:p></o:p></span></p> | ||
| + | <p class="MsoListContinue">Bold formats: <st1:city w:st="on"><st1:place w:st="on"><strong style="">Normal</strong></st1:place></st1:city><strong style="">, </strong><span class="brcode"><strong style=""><span style="font-size: 10pt;">br_code, </span></strong></span><span class="brGUI"><strong>br_GUI, </strong></span><span class="brvariable"><strong>br_variable<br /></strong></span></p> | ||
| + | <p class="MsoListContinue"> </p> | ||
| + | <p class="MsoListContinue">Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, <span class="brcode"><span style="font-size: 10pt;">br_code, </span></span><span class="brGUI">br_GUI, </span><span class="brvariable">br_variable<o:p></o:p></span></p> | ||
| + | <p class="MsoListContinue">Bold formats: <st1:city w:st="on"><st1:place w:st="on"><strong style="">Normal</strong></st1:place></st1:city><strong style="">, </strong><span class="brcode"><strong style=""><span style="font-size: 10pt;">br_code, </span></strong></span><span class="brGUI"><strong>br_GUI, </strong></span><span class="brvariable"><strong>br_variable</strong><o:p></o:p></span></p> | ||
| + | <p class="MsoListContinue"><span class="brvariable"><o:p></o:p></span></p> | ||
| + | <br /> | ||
| + | <p class="MsoListContinue"><span class="brvariable"><o:p></o:p></span></p> | ||
<h1><a name="_Toc127331828">Bulleted and Numbered Lists</a></h1> | <h1><a name="_Toc127331828">Bulleted and Numbered Lists</a></h1> | ||
<p class="MsoNormal">For bulleted lists, use</p> | <p class="MsoNormal">For bulleted lists, use</p> | ||
<p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet</p> | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet</p> | ||
<p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet</p> | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet</p> | ||
| − | <p style="margin-left: 40px; | + | <p class="MsoListContinue" style="margin-left: 40px;">List Continue</p> |
| − | <p style="margin-left: 40px; | + | <p class="MsoListBullet2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">■<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet 2</p> |
| − | <p style="margin-left: 40px; | + | <p class="MsoListBullet2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">■<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet 2</p> |
| − | <p style="margin-left: 80px; | + | <p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p> |
<p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet</p> | <p class="MsoListBullet"><!--[if !supportLists]--><span style="">●<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet</p> | ||
<p class="MsoNormal">For numbered lists, use:</p> | <p class="MsoNormal">For numbered lists, use:</p> | ||
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> | <p class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> | ||
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> | <p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> | ||
| − | <p style="margin-left: 40px; | + | <p class="MsoListContinue" style="margin-left: 40px;">List Continue</p> |
| − | <p style="margin-left: 40px; | + | <p class="MsoListNumber2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">1.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number 2</p> |
| − | <p style="margin-left: 40px; | + | <p class="MsoListNumber2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">2.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number 2</p> |
| − | <p style="margin-left: 80px; | + | <p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p> |
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">3.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> | <p class="MsoListNumber"><!--[if !supportLists]--><span style="">3.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> | ||
| − | <p | + | <p style="margin-left: 40px;" class="MsoListNumber2"><!--[if !supportLists]--><span style="">1.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number 2.</p> |
| − | <p | + | <p style="margin-left: 40px;" class="MsoListNumber2"><!--[if !supportLists]--><span style="">2.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number 2.</p> |
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">4.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> | <p class="MsoListNumber"><!--[if !supportLists]--><span style="">4.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> | ||
<p class="MsoNormal">Numbered and bulleted lists can be mixed:</p> | <p class="MsoNormal">Numbered and bulleted lists can be mixed:</p> | ||
| − | <p | + | <p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number:</p> |
| − | <p style="margin-left: 40px; | + | <p class="MsoListBullet2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">■<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet 2</p> |
| − | <p style="margin-left: 80px; | + | <p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p> |
| − | <p style="margin-left: 40px; | + | <p class="MsoListBullet2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">■<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List Bullet 2</p> |
| − | <p style="margin-left: 80px; | + | <p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p> |
| − | <p | + | <p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> |
| − | <p | + | <p style="margin-left: 40px;" class="MsoListNumber2"><!--[if !supportLists]--><span style="">1.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number 2</p> |
| − | <p style="margin-left: 40px; | + | <p class="MsoListNumber2" style="margin-left: 40px;"><!--[if !supportLists]--><span style="">2.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number 2</p> |
| − | <p style="margin-left: 80px; | + | <p class="MsoListContinue2" style="margin-left: 80px;">List Continue 2</p> |
| − | <p | + | <p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">3.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->List number.</p> |
<p class="MsoNormal">Tables need to come over cleanly. It’s hard to capture all formats, but here’s a basic table:</p> | <p class="MsoNormal">Tables need to come over cleanly. It’s hard to capture all formats, but here’s a basic table:</p> | ||
| − | <table cellspacing="0" cellpadding="0" border="1 | + | <table cellspacing="0" cellpadding="0" border="1" style="border: medium none ; border-collapse: collapse;" class="MsoTableGrid"> |
<tbody> | <tbody> | ||
<tr style=""> | <tr style=""> | ||
| Line 54: | Line 94: | ||
<td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;"> | <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;"> | ||
<p class="MsoNormal">Blah, blah, blah.</p> | <p class="MsoNormal">Blah, blah, blah.</p> | ||
| − | <p | + | <p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->Numbered stuff, stuff, stuff.</p> |
<p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->Stuff, stuff, stuff.</p> | <p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: "Times New Roman"; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;"> </span></span><!--[endif]-->Stuff, stuff, stuff.</p> | ||
</td> | </td> | ||
| Line 96: | Line 136: | ||
</v:shape><![endif]--><!--[if !vml]--><span style="font-size: 12pt; font-family: "Times New Roman";">[[image:Icon-file-gct.gif]]</span><!--[endif]--></p> | </v:shape><![endif]--><!--[if !vml]--><span style="font-size: 12pt; font-family: "Times New Roman";">[[image:Icon-file-gct.gif]]</span><!--[endif]--></p> | ||
<p class="MsoNormal">In rare cases, graphics appear in tables. Here’s an example:</p> | <p class="MsoNormal">In rare cases, graphics appear in tables. Here’s an example:</p> | ||
| − | <table cellspacing="0" cellpadding="0" border="1" style="border: medium none ; margin-left: 5.4pt; border-collapse: collapse; | + | <table cellspacing="0" cellpadding="0" border="1" class="MsoTableGrid" style="border: medium none ; margin-left: 5.4pt; border-collapse: collapse;"> |
<tbody> | <tbody> | ||
<tr style=""> | <tr style=""> | ||
Revision as of 13:36, 21 March 2006
Contents
<a name="_Toc127331825">Heading 1</a>
● For variables (this looks the same as GUI, but might in the future): br_variable
Test: HTML code, HTML variable, plain.
● For variables (this looks the same as GUI, but might in the future): br_variable
java -cp full-path/gsea.jar -Xmx512m gsea-tool parameters
● For variables (this looks the same as GUI, but might in the future): br_variable
<o:p></o:p>
● For variables (this looks the same as GUI, but might in the future): br_variable
● For variables (this looks the same as GUI, but might in the future): br_variable
Plain, emphasis, gui, italic
Within paragraph text, we use a number of character formats:
● Hyperlinks: hyperlink
● Code and file names: br_code<o:p></o:p>
● For GUI items, like menus and buttons: br_GUI<o:p></o:p>
● For menus, we use angle brackets, which need to be preserved: File>Open.
● For variables (this looks the same as GUI, but might in the future): br_variable<o:p></o:p>
● For various reasons, most formats can be bold. So bold needs to be preserved.
Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, br_code, br_GUI, br_variable<o:p></o:p>
Bold formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, br_code, br_GUI, br_variable
Within paragraph text, we use a number of character formats:
● Hyperlinks: hyperlink
● Code and file names: br_code<o:p></o:p>
● For GUI items, like menus and buttons: br_GUI<o:p></o:p>
● For menus, we use angle brackets, which need to be preserved: File>Open.
● For variables (this looks the same as GUI, but might in the future): br_variable<o:p></o:p>
● For various reasons, most formats can be bold. So bold needs to be preserved.
Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, br_code, br_GUI, br_variable<o:p></o:p>
Bold formats: <st1:city w:st="on"><st1:place w:st="on">Normal</st1:place></st1:city>, br_code, br_GUI, br_variable
Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, br_code, br_GUI, br_variable<o:p></o:p>
Bold formats: <st1:city w:st="on"><st1:place w:st="on">Normal</st1:place></st1:city>, br_code, br_GUI, br_variable<o:p></o:p>
<o:p></o:p>
<o:p></o:p>
<a name="_Toc127331828">Bulleted and Numbered Lists</a>
For bulleted lists, use
● List Bullet
● List Bullet
List Continue
■ List Bullet 2
■ List Bullet 2
List Continue 2
● List Bullet
For numbered lists, use:
1. List number.
2. List number.
List Continue
1. List number 2
2. List number 2
List Continue 2
3. List number.
1. List number 2.
2. List number 2.
4. List number.
Numbered and bulleted lists can be mixed:
1. List number:
■ List Bullet 2
List Continue 2
■ List Bullet 2
List Continue 2
2. List number.
1. List number 2
2. List number 2
List Continue 2
3. List number.
Tables need to come over cleanly. It’s hard to capture all formats, but here’s a basic table:
<tbody> </tbody>|
Column Header<o:p></o:p> |
Column Header<o:p></o:p> |
|
Blah, blah, blah.
|
Blah, blah, blah. 1. Numbered stuff, stuff, stuff. 2. Stuff, stuff, stuff. |
|
Blah, blah, blah. |
Blah, blah, blah. |
<o:p> </o:p>
In Word, graphics are linked in files. They also need to come over:
In rare cases, graphics appear in tables. Here’s an example:
<tbody> </tbody>|
[[images/icon-file-res.gif]] |
Expression dataset (res) |
|
[[images/icon-file-res.gif]] |
Expression dataset (gct) |
|
[[images/icon-file-res.gif]] |
Expression dataset (pcl) |
<a name="_Toc127331832">Content</a>
The introduction to each section that has subsections, should provide hyperlinks to the subsections.
This section describes how to work with project directories in GenePattern:
- <a href="#_Opening_a_Project_Directory">Projects Pane</a>
- <a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a>
