Msigdb dtd

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<!--<br />    	This is the DTD for MSigDB.<br />	It describes a format for a database of gene sets that captures<br />	both the content of a gene set (i.e gene members) as well as annotation about<br />	the gene set.<br />	@VERSION 1.0 May 2006<br />	@AUTHOR Aravind Subramanian<br />--><br /><!DOCTYPE MSIGDB [<br /><!ELEMENT MSIGDB GENESET*          	-- top level container --><br /><!ATTLIST MSIGDB<br />  	NAME	CDATA	#REQUIRED	-- name of the database<br />  	VERSION	CDATA	#REQUIRED	-- version of the database<br />><br /><br /><!ELEMENT GENESET                  	-- a single gene set --><br /><!ATTLIST GENESET<br />	STANDARD_NAME		CDATA	#REQUIRED	-- an english name for the gene set<br />	SYSTEMATIC_NAME		CDATA	#REQUIRED	-- a systematized identifier<br />	ORGANISM		CDATA	#REQUIRED	-- organism in which the geneset was generated<br />	EXTERNAL_DETAILS_URL	CDATA	    	        -- 3rd party url for more info<br />	CHIP			CDATA	#REQUIRED	-- platform on which the geneset was generated<br />	CATEGORY_CODE		CDATA	(C1|C2|C3|C4)<br />	SUB_CATEGORY_CODE	CDATA	(CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH)	<br />	CONTRIBUTOR		CDATA	#REQUIRED	-- name of person/database that curated the set<br />	PMID			CDATA			-- PubMed ID if available<br />	GEOID			CDATA			-- GEO ID if available<br />	DESCRIPTION		CDATA			-- a full detailed desc or abstract<br />	DESCRIPTION_BRIEF	CDATA	#REQUIRED	-- a brief 1 line description<br />	%MESH			CDATA			-- keywords and MESH identifiers<br />	%MEMBERS		CDATA	#REQUIRED	-- Genes in the native format<br />	%MEMBERS_SYMBOLIZED	CDATA	#REQUIRED	-- Genes after converting to gene symbols<br />><br />]>

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