Difference between revisions of "1010"
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| − | The phenotype that you selected for the <span style="font-style: italic;">Phenotype labels</span> parameter is a categorical phenotype. The metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter is used with continuous phenotypes. | + | The phenotype that you selected for the <span style="font-style: italic;">Phenotype labels</span> parameter is a categorical phenotype. The metric that you selected in the <span style="font-style: italic;">Metric for ranking genes </span>parameter is used with continuous phenotypes. Use one of the following metrics for categorical phenotypes:<br /> |
| + | <ul> | ||
| + | <li>Signal2Noise (default)</li> | ||
| + | <li>tTest</li> | ||
| + | <li>Bhattacharyya</li> | ||
| + | </ul> | ||
| + | For more information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the <em style="">GSEA User Guide. </em>For descriptions of the metrics, see the <span style="font-style: italic;">Metric for ranking genes </span>parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the <em style="">GSEA User Guide</em>. | ||
Revision as of 10:58, 4 April 2006
The phenotype that you selected for the Phenotype labels parameter is a categorical phenotype. The metric that you selected in the Metric for ranking genes parameter is used with continuous phenotypes. Use one of the following metrics for categorical phenotypes:
- Signal2Noise (default)
- tTest
- Bhattacharyya
For more information about phenotypes, see Phenotype Labels in the GSEA User Guide. For descriptions of the metrics, see the Metric for ranking genes parameter on the Run GSEA Page in the GSEA User Guide.
