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| | [http://www.broadinstitute.org/gsea/contact.jsp Contact] | | [http://www.broadinstitute.org/gsea/contact.jsp Contact] |
| | <br> | | <br> |
| − | <p>GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.</p> | + | |
| − | <table>
| + | <p> |
| − | <tr style="height: 73.5pt;">
| + | The GSEA Desktop v3.0 Beta is distributed, in part, under and subject to the provisions of licenses for [https://raw.githubusercontent.com/GSEA-MSigDB/gsea-desktop/master/LICENSE-3RD-PARTY.txt|a number of third-party libraries and components] used in its development. |
| − | <td>[http://www.jidesoft.com Jide Software]</td>
| + | </p> |
| − | <td>Java/Swing components</td>
| + | <p> |
| − | <td></td>
| + | The MSigDB XML Browser v1.0 Beta is distributed, in part, under and subject to the provisions of licenses for |
| − | </tr>
| + | [https://raw.githubusercontent.com/GSEA-MSigDB/msigdb-xml-browser/master/LICENSE-3RD-PARTY.txt|a number of third-party libraries and components] used in its development. |
| − | <tr>
| + | </p> |
| − | <td>[http://www.oracle.com/technetwork/java/index.html The Java 2 Platform]</td>
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| − | <td>Language that the GSEA desktop application is written in</td>
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| − | <td>[[image:duke.gif]]</td>
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| − | </tr>
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| − | <tr>
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| − | <td>[http://www.r-project.org/index.html The R programming language]</td>
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| − | <td>Language that the GSEAP-P-R is written in</td>
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| − | <td>[[image:Rlogo.jpg]]</td>
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| − | </tr>
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| − | <tr>
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| − | <td>[http://www.intellij.com/idea/ Intellij IDEA]</td>
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| − | <td>An awesome integrated development environment for Java</td>
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| − | <td>[[image:idea.png]]</td>
| |
| − | </tr>
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| − | <tr>
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| − | <td>[http://www.jgoodies.com/ JGoodies]</td>
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| − | <td>Forms layout and java look and feel</td>
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| − | <td></td>
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| − | </tr>
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| − | <tr>
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| − | <td>[http://foxtrot.sourceforge.net/docs/introduction.php foxtrot]</td>
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| − | <td>Java event handling mechanism for GUI's.</td>
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| − | <td></td>
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| − | </tr>
| |
| − | <tr>
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| − | <td>[http://www.dom4j.org/ dom4j]</td>
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| − | <td>XML Parser</td>
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| − | <td></td>
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| − | </tr>
| |
| − | <tr>
| |
| − | <td>[http://www.lowagie.com/iText/ itext]</td>
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| − | <td>Java PDF library</td>
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| − | <td>[[image:itext.gif]]</td>
| |
| − | </tr>
| |
| − | <tr>
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| − | <td>[http://jakarta.apache.org/poi/hssf/index.html Jakarta POI (especially HSSF)]</td>
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| − | <td>Java excel reporting</td>
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| − | <td>[[image: poi-logo.png]]</td>
| |
| − | </tr>
| |
| − | <tr style="height: 123pt;">
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| − | <td>[http://www.object-refinery.com/jfreechart/ JFreeChart]</td>
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| − | <td>Graphing library for Java</td>
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| − | <td>[[image: jfreechart.png]]</td>
| |
| − | </tr>
| |
| − | <tr>
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| − | <td>[http://www.junit.org/index.htm JUnit]</td>
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| − | <td>Unit testing API</td>
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| − | <td>[[image: junit.gif]]</td>
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| − | </tr>
| |
| − | <tr>
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| − | <td>[http://jakarta.apache.org/log4j/docs/ log4j]</td>
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| − | <td>Logging toolkit for Java</td>
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| − | <td>[[image:log4j.jpg]]</td>
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| − | </tr>
| |
| − | <tr>
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| − | <td>[http://jakarta.apache.org/oro/ Oro]</td>
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| − | <td>Regular expressions library in Java</td>
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| − | <td>[[Image:Oro.logo.gif]]</td>
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| − | </tr>
| |
| − | <tr>
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| − | <td>[http://trove4j.sourceforge.net Trove]</td>
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| − | <td>High performance collections library from GNU</td>
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| − | <td></td>
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| − | </tr>
| |
| − | <tr>
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| − | <td>[http://jakarta.apache.org/ecs ECS]</td>
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| − | <td>Element construction set (a HTML tag library from Apache Jakarta</td>
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| − | <td>[[Image:Ecs-small.jpg]]</td>
| |
| − | </tr>
| |
| − | <tr>
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| − | <td>[http://home.snafu.de/tilman/xenulink.html Xenu link sleuth]</td>
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| − | <td>Website broken link checker</td>
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| − | <td>[[Image:Xenu_logo.png]]</td>
| |
| − | </tr>
| |
| − | </table>
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