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- mainpage|Fake nav item
- Known_Issues|Another Fake Nav Item
- Navigation
- mainpage|Documentation Home
- http://www.broadinstitute.org/gsea/doc/desktop_tutorial.jsp%7CTutorial
- http://www.broadinstitute.org/gsea/doc/GSEAUserGuideFrame.html%7CUser Guide
- data_formats|Data Formats
- faq|FAQ
- Known_Issues|Known Issues
- license_info|GSEA/MSigDB License
- Gsea_Algorithm|Algorithm
- http://www.broadinstitute.org/gsea/resources/datasets_index.html%7CPNAS 2005 Examples
- gsea_papers|Papers that use GSEA
- MSigDB
- gene_set_card_guide|Gene Set Pages
- Release_Notes|Release Notes
- Msigdb_mapping_v2.5_to_v3|Mapping between v2.5 and v3.0 gene sets
- MSigDB_XML_description|MSigDB XML file description
- mSigDB_Acknowledgements|MSigDB Acknowledgements
- Software
- Release_Notes|Release Notes
- R-GSEA_Readme|R-GSEA Readme
- Java_Source_Code|Java Source Code
- http://www.broadinstitute.org/gsea/javadoc%7CJavaDoc
- software_Acknowledgements|Software Acknowledgements
- Gsea_at_the_Broad|For Broad Users
- Internal only
- gsea_wiki_notes|Wiki How-to-Use
- gsea_enhancements|Bugs and Enhancements
- context_sensitive_help_pages|Context Sensitive Help Codes
- v2_notes_from_user_testing|Notes from user testing