Software Acknowledgements
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GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.
| Jide Software | Java/Swing components | |
| The Java 2 Platform | Language that the GSEA desktop application is written in |  |
| The R programming language | Language that the GSEAP-P-R is written in |  |
| Intellij IDEA | An awesome integrated development environment for Java |  |
| JGoodies | Forms layout and java look and feel | |
| foxtrot | Java event handling mechanism for GUI's. | |
| dom4j | XML Parser | |
| itext | Java PDF library |  |
| Jakarta POI (especially HSSF) | Java excel reporting |  |
| JFreeChart | Graphing library for Java |  |
| JUnit | Unit testing API |  |
| log4j | Logging toolkit for Java |  |
| Oro | Regular expressions library in Java |  |
| Trove | High performance collections library from GNU | |
| ECS | Element construction set (a HTML tag library from Apache Jakarta |  |
| Xenu link sleuth | Website broken link checker |  |
