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<a name="_Toc127331830">Header and Footer</a>

The headers and footers would normally come over to html, but just for completeness, those formats would be

  • Header: header text
  • Footer: footer text<o:p></o:p>

<a name="_Toc127331831">Tables and Graphics</a>

Tables need to come over cleanly. It’s hard to capture all formats, but here’s a basic table:

<tbody> </tbody>

Column Header<o:p></o:p>

Column Header<o:p></o:p>

Blah, blah, blah.

  • Bulleted stuff, stuff, stuff.
  • Stuff, stuff, stuff.

Blah, blah, blah.

1.      Numbered stuff, stuff, stuff.

2.      Stuff, stuff, stuff.

Blah, blah, blah.

Blah, blah, blah.

<o:p> </o:p>

In Word, graphics are linked in files. They also need to come over:

<img width="19" height="19" v:shapes="_x0000_i1025" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" />

In rare cases, graphics appear in tables. Here’s an example:

<tbody> </tbody>

<img width="19" height="19" v:shapes="_x0000_i1026" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" />

Expression dataset (res)

<img width="19" height="19" v:shapes="_x0000_i1027" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" alt="" />

Expression dataset (gct)

<img width="18" height="18" v:shapes="_x0000_i1028" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" alt="" />

Expression dataset (pcl)

<a name="_Toc127331832">Content</a>

The introduction to each section that has subsections, should provide hyperlinks to the subsections.

This section describes how to work with project directories in GenePattern:

  • <a href="#_Opening_a_Project_Directory">Projects Pane</a>
  • <a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a>