Msigdb dtd
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<?xml version="1.0" encoding="UTF-8"?><br /><!--<br /> This is the DTD for MSigDB.<br /> It describes a format for a database of gene sets that captures<br /> both the content of a gene set (i.e gene members) as well as annotation about<br /> the gene set.<br /> @VERSION 1.0 May 2006<br /> @AUTHOR Aravind Subramanian<br />--><br />
<?xml version="1.0" encoding="UTF-8"?><br /><!--<br /> This is the DTD for MSigDB.<br /> It describes a format for a database of gene sets that captures<br /> both the content of a gene set (i.e gene members) as well as annotation about<br /> the gene set.<br /> @VERSION 1.0 May 2006<br /> @AUTHOR Aravind Subramanian<br />--><br /><!DOCTYPE MSIGDB [<br /><!ELEMENT MSIGDB GENESET* -- top level container --><br /><!ATTLIST MSIGDB<br /> NAME CDATA #REQUIRED -- name of the database<br /> VERSION CDATA #REQUIRED -- version of the database<br />><br /><br /><!ELEMENT GENESET -- a single gene set --><br /><!ATTLIST GENESET<br /> STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br /> SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br /> ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br /> EXTERNAL_DETAILS_URL CDATA -- 3rd party url for more info<br /> CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br /> CATEGORY_CODE CDATA (C1|C2|C3|C4)<br /> SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br /> CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br /> PMID CDATA -- PubMed ID if available<br /> GEOID CDATA -- GEO ID if available<br /> DESCRIPTION CDATA -- a full detailed desc or abstract<br /> DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br /> %MESH CDATA -- keywords and MESH identifiers<br /> %MEMBERS CDATA #REQUIRED -- Genes in the native format<br /> %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols<br />><br />]>
