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  • http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.htm%7CUser Guide
  • http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.htm#Quick_Reference%7CQuick Reference
  • gsea_tutorial|Tutorial
  • data_formats|Data Formats
  • Gsea_Algorithm|Algorithm
  • http://wwwdev.broad.mit.edu/gsea/resources/datasets_index.html%7CPNAS 2005 Examples
  • faq|Frequently Asked Questions
  • gsea_papers|Papers that use GSEA
  • license_info|Software License
  • software_Acknowledgements|Software Acknowledgements

• MSigDB
  • gene_set_card_guide|Guide to a GeneSetCard
  • msigdb_dtd|Document Type Definition (DTD) for MSigDB
  • mSigDB_License|MSigDB License
  • mSigDB_Acknowledgements|MSigDB Acknowledgements

• Releases
  • software_v2_release_notes|Software Version 2 Release Notes
  • msigdb_may_2006_release_notes|MSigDB May 2006 Release Notes
  • Archived_Release_Notes|Archived Release Notes

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• Internal only
  • gsea_wiki_notes|Wiki How-to-Use
  • gsea_enhancements|Bugs and Enhancements
  • context_sensitive_help_pages|Context Sensitive Help Codes