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  • mainpage|Documentation Home
  • http://www.broadinstitute.org/gsea/doc/desktop_tutorial.jsp%7CTutorial
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  • data_formats|Data Formats
  • faq|FAQ
  • Known_Issues|Known Issues
  • R-GSEA_Readme|R-GSEA Readme
  • Gsea_Algorithm|Algorithm
  • www.broadinstitute.org/gsea/datasets.jsp|PNAS 2005 Examples
  • gsea_papers|Papers that use GSEA

• MSigDB
  • Release_Notes|Release Notes
  • MSigDB_Statistics|Summary Stats
  • Mapping_between_v3.1_and_v3.0_gene_sets
  • gene_set_card_guide|Guide to a GeneSetCard
  • msigdb_dtd|Document Type Definition (DTD) for MSigDB
  • mSigDB_License|MSigDB License
  • mSigDB_Acknowledgements|MSigDB Acknowledgements

• Software
  • Release_Notes|Release Notes
  • license_info|Software License
  • software_Acknowledgements|Software Acknowledgements
  • Gsea_at_the_Broad|For Broad Users

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• Internal only
  • gsea_wiki_notes|Wiki How-to-Use
  • gsea_enhancements|Bugs and Enhancements
  • context_sensitive_help_pages|Context Sensitive Help Codes
  • v2_notes_from_user_testing|Notes from user testing