Software Acknowledgements

GSEA implementations use many software tools and libraries, several of which are open source and/or freely available. Our thanks to their developers.

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Jide Software	Java/Swing components	[1]
The Java 2 Platform	Language that the GSEA desktop application is written in	[2]
The R programming language	Language that the GSEAP-P-R is written in	[3]
Intellij IDEA	An awesome integrated development environment for Java	[4]
JGoodies	Forms layout and java look and feel	[5]
foxtrot	Java event handling mechanism for GUI's.	[6]
dom4j	XML Parser	[7]
itext [image:itext.gif]	Java PDF library	[8]
<st1:place w:st="on"><st1:city w:st="on">jakarta</st1:city></st1:place> POI (especially HSSF)	Java excel reporting	[9]
JFreeChart	Graphing library for Java	[10]
JUnit	Unit testing API	[11]
log4j [[image:log4j.jpg]	Logging toolkit for Java	[12]
Oro	Regular expressions library in Java	[13]
Trove	High performance collections library from GNU	[14]
ECS	Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)	[15]
Xenu link sleuth	Website broken link checker	[16]
InstallAnywhere	Java installation program builder	[17]

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