Software Acknowledgements

<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | <a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>

GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.

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<a href="http://www.jidesoft.com jidesoft.com">Jide Software</a>	Java/Swing components
<a href="http://www.oracle.com/technetwork/java/index.html http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform	Language that the GSEA desktop application is written in
<a href="http://www.r-project.org/index.html www.r-project.org">The R programming language</a>	Language that the GSEAP-P-R is written in
<a href="http://www.intellij.com/idea/">Intellij IDEA</a>	An awesome integrated development environment for Java
<a href="http://www.jgoodies.com/ www.jgoodies.com">JGoodies</a>	Forms layout and java look and feel
<a href="http://foxtrot.sourceforge.net/docs/introduction.php">foxtrot</a>	Java event handling mechanism for GUI's.
<a href="http://www.dom4j.org/">dom4j</a>	XML Parser
<a href="http://www.lowagie.com/iText/">itext</a>	Java PDF library
<a href="http://jakarta.apache.org/poi/hssf/index.html">Jakarta POI (especially HSSF)</a>	Java excel reporting
<a href="http://www.object-refinery.com/jfreechart/">JFreeChart</a>	Graphing library for Java
<a href="http://www.junit.org/index.htm">JUnit</a>	Unit testing API
log4j	Logging toolkit for Java	jakarta.apache.org/log4j
Oro	Regular expressions library in Java	jakarta.apache.org/oro
Trove	High performance collections library from GNU	trove4j.sourceforge.net
ECS	Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)	jakarta.apache.org
Xenu link sleuth	Website broken link checker	home.snafu.de/tilman/xenulink