Software Acknowledgements

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<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | <a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>

GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.

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<a href="http://www.jidesoft.com">Jide Software</a> Java/Swing components
<a href="http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform Language that the GSEA desktop application is written in Duke.gif
<a href="http://www.r-project.org/index.html">The R programming language</a> Language that the GSEAP-P-R is written in Rlogo.jpg
<a href="http://www.intellij.com/idea/">Intellij IDEA</a> An awesome integrated development environment for Java Idea.png
<a href="http://www.jgoodies.com/">JGoodies</a> Forms layout and java look and feel
<a href="http://foxtrot.sourceforge.net/docs/introduction.php">foxtrot</a> Java event handling mechanism for GUI's.
<a href="http://www.dom4j.org/">dom4j</a> XML Parser
<a href="http://www.lowagie.com/iText/">itext</a> Java PDF library Itext.gif
<a href="http://jakarta.apache.org/poi/hssf/index.html">Jakarta POI (especially HSSF)</a> Java excel reporting Poi-logo.png
<a href="http://www.object-refinery.com/jfreechart/">JFreeChart</a> Graphing library for Java Jfreechart.png
<a href="http://www.junit.org/index.htm">JUnit</a> Unit testing API Junit.gif
<a href="http://jakarta.apache.org/log4j/docs/">log4j</a> Logging toolkit for Java Log4j.jpg
<a href="http://jakarta.apache.org/oro/">Oro</a> Regular expressions library in Java Oro.logo.gif

Trove

High performance collections library from GNU

trove4j.sourceforge.net 

ECS

Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)

jakarta.apache.org

Xenu link sleuth

Website broken link checker

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