Software Acknowledgements

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GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.

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Jide Software	Java/Swing components
The Java 2 Platform	Language that the GSEA desktop application is written in
The R programming language	Language that the GSEAP-P-R is written in
Intellij IDEA	An awesome integrated development environment for Java
JGoodies	Forms layout and java look and feel
foxtrot	Java event handling mechanism for GUI's.
dom4j	XML Parser
itext	Java PDF library
Jakarta POI (especially HSSF)	Java excel reporting
JFreeChart	Graphing library for Java
JUnit	Unit testing API
log4j	Logging toolkit for Java
Oro	Regular expressions library in Java
Trove	High performance collections library from GNU
ECS	Element construction set (a HTML tag library from Apache Jakarta
Xenu link sleuth	Website broken link checker