https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&feed=atom&action=history 1010 - Revision history 2024-03-28T18:36:49Z Revision history for this page on the wiki MediaWiki 1.34.4 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=2544&oldid=prev Hkuehn at 17:03, 12 January 2007 2007-01-12T17:03:28Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:03, 12 January 2007</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;log2_Ratio_of_Classes&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;log2_Ratio_of_Classes&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;For information about phenotypes, see [http://<del class="diffchange diffchange-inline">wwwdev</del>.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html?Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://<del class="diffchange diffchange-inline">wwwdev</del>.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html?Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>For information about phenotypes, see [http://<ins class="diffchange diffchange-inline">www</ins>.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html?Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://<ins class="diffchange diffchange-inline">www</ins>.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html?Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td></tr> </table> Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=2181&oldid=prev Hkuehn at 16:36, 2 January 2007 2007-01-02T16:36:50Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:36, 2 January 2007</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;log2_Ratio_of_Classes&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;log2_Ratio_of_Classes&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html<del class="diffchange diffchange-inline">#</del>Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html<del class="diffchange diffchange-inline">#</del>Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">&lt;br /&gt;</ins>For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html<ins class="diffchange diffchange-inline">?</ins>Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuideFrame.html<ins class="diffchange diffchange-inline">?</ins>Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td></tr> </table> Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=2180&oldid=prev Hkuehn at 16:35, 2 January 2007 2007-01-02T16:35:10Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:35, 2 January 2007</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Signal2Noise (default)&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Signal2Noise (default)&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;tTest&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;tTest&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;<del class="diffchange diffchange-inline">None</del>&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;<ins class="diffchange diffchange-inline">Ratio_of_Classes&lt;/li&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">    &lt;li&gt;Diff_of_Classes&lt;/li&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">    &lt;li&gt;log2_Ratio_of_Classes</ins>&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">&lt;br /&gt;</del>For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/<del class="diffchange diffchange-inline">GSEAUserGuide</del>.<del class="diffchange diffchange-inline">htm</del>#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/<del class="diffchange diffchange-inline">GSEAUserGuide</del>.<del class="diffchange diffchange-inline">htm</del>#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/<ins class="diffchange diffchange-inline">GSEAUserGuideFrame</ins>.<ins class="diffchange diffchange-inline">html</ins>#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/<ins class="diffchange diffchange-inline">GSEAUserGuideFrame</ins>.<ins class="diffchange diffchange-inline">html</ins>#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td></tr> </table> Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=2126&oldid=prev Aravind at 15:39, 11 December 2006 2006-12-11T15:39:59Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:39, 11 December 2006</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Signal2Noise (default)&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Signal2Noise (default)&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;tTest&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;tTest&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">    &lt;li&gt;Bhattacharyya&lt;/li&gt;</del></div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;None&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;None&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td></tr> </table> Aravind https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=1665&oldid=prev Hkuehn at 16:06, 4 April 2006 2006-04-04T16:06:26Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:06, 4 April 2006</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l4" >Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;tTest&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;tTest&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Bhattacharyya&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Bhattacharyya&lt;/li&gt;</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">    &lt;li&gt;None&lt;/li&gt;</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td></tr> </table> Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=1663&oldid=prev Hkuehn at 16:04, 4 April 2006 2006-04-04T16:04:15Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:04, 4 April 2006</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l5" >Line 5:</td> <td colspan="2" class="diff-lineno">Line 5:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Bhattacharyya&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Bhattacharyya&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">&lt;br /&gt;</ins>For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td></tr> </table> Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=1662&oldid=prev Hkuehn at 16:03, 4 April 2006 2006-04-04T16:03:39Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:03, 4 April 2006</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l5" >Line 5:</td> <td colspan="2" class="diff-lineno">Line 5:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Bhattacharyya&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Bhattacharyya&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>For <del class="diffchange diffchange-inline">more </del>information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For <del class="diffchange diffchange-inline">more </del>information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>For information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For information about the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td></tr> </table> Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=1661&oldid=prev Hkuehn at 16:02, 4 April 2006 2006-04-04T16:02:46Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:02, 4 April 2006</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l5" >Line 5:</td> <td colspan="2" class="diff-lineno">Line 5:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Bhattacharyya&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Bhattacharyya&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>For more information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For <del class="diffchange diffchange-inline">descriptions of </del>the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>For more information about phenotypes, see [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Phenotypes Phenotype Labels] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide. &lt;/em&gt;&lt;br /&gt;For <ins class="diffchange diffchange-inline">more information about </ins>the metrics, see the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter on the [http://wwwdev.broad.mit.edu/gsea/doc/GSEAUserGuide.htm#Run_GSEA_Page Run GSEA Page] in the &lt;em style=&quot;&quot;&gt;GSEA User Guide&lt;/em&gt;.</div></td></tr> </table> Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=1660&oldid=prev Hkuehn at 16:02, 4 April 2006 2006-04-04T16:02:19Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:02, 4 April 2006</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>You selected a categorical phenotype for the &lt;span style=&quot;font-style: italic;&quot;&gt;Phenotype labels&lt;/span&gt; parameter; however, the metric that you selected in the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter is used with continuous phenotypes. Select one of the following metrics for categorical <del class="diffchange diffchange-inline">phenotypes</del>:&lt;br /&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>You selected a categorical phenotype for the &lt;span style=&quot;font-style: italic;&quot;&gt;Phenotype labels&lt;/span&gt; parameter; however, the metric that you selected in the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter is used with continuous phenotypes. Select one of the following metrics for <ins class="diffchange diffchange-inline">a&amp;nbsp; </ins>categorical <ins class="diffchange diffchange-inline">phenotype</ins>:&lt;br /&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Signal2Noise (default)&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Signal2Noise (default)&lt;/li&gt;</div></td></tr> </table> Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=1010&diff=1659&oldid=prev Hkuehn at 16:01, 4 April 2006 2006-04-04T16:01:51Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:01, 4 April 2006</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">The </del>phenotype <del class="diffchange diffchange-inline">that you selected </del>for the &lt;span style=&quot;font-style: italic;&quot;&gt;Phenotype labels&lt;/span&gt; parameter <del class="diffchange diffchange-inline">is a categorical phenotype. The </del>metric that you selected in the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter is used with continuous phenotypes. <del class="diffchange diffchange-inline">Use </del>one of the following metrics for categorical phenotypes:&lt;br /&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">You selected a categorical </ins>phenotype for the &lt;span style=&quot;font-style: italic;&quot;&gt;Phenotype labels&lt;/span&gt; parameter<ins class="diffchange diffchange-inline">; however, the </ins>metric that you selected in the &lt;span style=&quot;font-style: italic;&quot;&gt;Metric for ranking genes &lt;/span&gt;parameter is used with continuous phenotypes. <ins class="diffchange diffchange-inline">Select </ins>one of the following metrics for categorical phenotypes:&lt;br /&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Signal2Noise (default)&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Signal2Noise (default)&lt;/li&gt;</div></td></tr> </table> Hkuehn