GSEA v2.0.1 Release Notes

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<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> |  <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | Documentation | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a> <br />
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<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> |  <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | <a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>   <br />
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Release 2.0.1 corrects two known problems in the GSEA software:
Release 2.0.1 corrects two known problems in the GSEA software:

Revision as of 14:16, 11 April 2013

<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | <a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>

Release 2.0.1 corrects two known problems in the GSEA software:

  • Leading edge analysis no longer fails if your GSEA report is based on a preranked list or continuous phenotype. This problem occurred and was fixed in the user interface; no change was made to the algorithm.
  • GSEA Run page includes a scroll bar to keep the Run button visible regardless of your screen resolution or window size.


Release 2.0.1 also corrects an error in the GSEA User Guide:

  • Changed the number of permutations recommended for gene_set permutation from 10000 to 1000.
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