GSEA v2.0.2 Release Notes

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Release 2.0.2 supports password protection of the GSEA ftp site. This entailed no user-visible change to the GSEA application.

Files can no longer be accessed directly from the GSEA ftp site. However,

Gene set and chip annotation files remain available from the <a href="http://www.broad.mit.edu/gsea/downloads.jsp">Downloads</a> page of the GSEA web site. Users who use the GSEA command line or other scripts to access files from the GSEA ftp site will now be prompted for a password. To avoid the prompt, download the required files from the GSEA web site and reference the downloaded files. Alternatively, contact GSEA team for the password.