GSEA v2.0.3 Release Notes - Revision history https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v2.0.3_Release_Notes&action=history Revision history for this page on the wiki en MediaWiki 1.34.4 Fri, 29 Mar 2024 15:05:44 GMT Eby at 07:49, 25 September 2016 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v2.0.3_Release_Notes&diff=4030&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v2.0.3_Release_Notes&diff=4030&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 07:49, 25 September 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l15" >Line 15:</td> <td colspan="2" class="diff-lineno">Line 15:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For What's New:&lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For What's New:&lt;br /&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>3/3/2009: Release 2.0.3 of GSEA is now available. The new release significantly increases the processing speed of the GSEA algorithm. To download the latest release, simply launch GSEA from the <del class="diffchange diffchange-inline">&lt;a href=&quot;</del>http://www.broad.mit.edu/gsea/downloads.jsp<del class="diffchange diffchange-inline">&quot;&gt;</del>Downloads<del class="diffchange diffchange-inline">&lt;/a&gt; </del>page. If you have questions, please contact us at: <del class="diffchange diffchange-inline">&lt;a href=&quot;</del>mailto:gsea@broad.mit.edu<del class="diffchange diffchange-inline">&quot;&gt;</del>gsea@broad.mit.edu<del class="diffchange diffchange-inline">&lt;/a&gt;</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>3/3/2009: Release 2.0.3 of GSEA is now available. The new release significantly increases the processing speed of the GSEA algorithm. To download the latest release, simply launch GSEA from the <ins class="diffchange diffchange-inline">[</ins>http://www.broad.mit.edu/gsea/downloads.jsp Downloads<ins class="diffchange diffchange-inline">] </ins>page. If you have questions, please contact us at: <ins class="diffchange diffchange-inline">[</ins>mailto:gsea@broad.mit.edu gsea@broad.mit.edu<ins class="diffchange diffchange-inline">]</ins>.</div></td></tr> </table> Sun, 25 Sep 2016 07:49:17 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:GSEA_v2.0.3_Release_Notes Eby at 07:47, 25 September 2016 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v2.0.3_Release_Notes&diff=4029&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v2.0.3_Release_Notes&diff=4029&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 07:47, 25 September 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">&lt;a href=&quot;</del>http://www.<del class="diffchange diffchange-inline">broad</del>.<del class="diffchange diffchange-inline">mit.edu</del>/gsea/<del class="diffchange diffchange-inline">&quot;&gt;</del>GSEA Home<del class="diffchange diffchange-inline">&lt;/a&gt; </del>| <del class="diffchange diffchange-inline"> &lt;a href=&quot;</del>http://www.<del class="diffchange diffchange-inline">broad.mit</del>.<del class="diffchange diffchange-inline">edu</del>/gsea/downloads.jsp<del class="diffchange diffchange-inline">&quot;&gt;</del>Downloads<del class="diffchange diffchange-inline">&lt;/a&gt; </del>| <del class="diffchange diffchange-inline">&lt;a href=&quot;</del>http://www.<del class="diffchange diffchange-inline">broad</del>.<del class="diffchange diffchange-inline">mit.edu</del>/gsea/msigdb/<del class="diffchange diffchange-inline">&quot;&gt;</del>Molecular Signatures Database<del class="diffchange diffchange-inline">&lt;</del>/<del class="diffchange diffchange-inline">a&gt; | </del>Documentation | <del class="diffchange diffchange-inline">&lt;a href=&quot;</del>http://www.<del class="diffchange diffchange-inline">broad</del>.<del class="diffchange diffchange-inline">mit.edu</del>/gsea/contact.jsp<del class="diffchange diffchange-inline">&quot;&gt;</del>Contact<del class="diffchange diffchange-inline">&lt;/a&gt; </del> &lt;br /&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">[</ins>http://www.<ins class="diffchange diffchange-inline">broadinstitute</ins>.<ins class="diffchange diffchange-inline">org</ins>/gsea/ GSEA Home<ins class="diffchange diffchange-inline">] </ins>|</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">[</ins>http://www.<ins class="diffchange diffchange-inline">broadinstitute</ins>.<ins class="diffchange diffchange-inline">org</ins>/gsea/downloads.jsp Downloads<ins class="diffchange diffchange-inline">] </ins>|  </div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">[</ins>http://www.<ins class="diffchange diffchange-inline">broadinstitute</ins>.<ins class="diffchange diffchange-inline">org</ins>/gsea/msigdb/ Molecular Signatures Database<ins class="diffchange diffchange-inline">] | </ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">[http:/</ins>/<ins class="diffchange diffchange-inline">www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page </ins>Documentation<ins class="diffchange diffchange-inline">] </ins>|</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">[</ins>http://www.<ins class="diffchange diffchange-inline">broadinstitute</ins>.<ins class="diffchange diffchange-inline">org</ins>/gsea/contact.jsp Contact<ins class="diffchange diffchange-inline">]</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>  &lt;br /&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 2.0.3 significantly increases the processing speed of the GSEA algorithm. Our thanks to Justin Guinney of Duke University who submitted this enhancement to the code. There is &lt;strong&gt;no&lt;/strong&gt; &lt;strong&gt;change&lt;/strong&gt; to the GSEA algorithm. This modification simply increases the speed of the algorithm. &lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 2.0.3 significantly increases the processing speed of the GSEA algorithm. Our thanks to Justin Guinney of Duke University who submitted this enhancement to the code. There is &lt;strong&gt;no&lt;/strong&gt; &lt;strong&gt;change&lt;/strong&gt; to the GSEA algorithm. This modification simply increases the speed of the algorithm. &lt;br /&gt;</div></td></tr> </table> Sun, 25 Sep 2016 07:47:58 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:GSEA_v2.0.3_Release_Notes Hkuehn at 15:23, 3 March 2009 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v2.0.3_Release_Notes&diff=2928&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v2.0.3_Release_Notes&diff=2928&oldid=prev <p></p> <p><b>New page</b></p><div>&lt;a href=&quot;http://www.broad.mit.edu/gsea/&quot;&gt;GSEA Home&lt;/a&gt; | &lt;a href=&quot;http://www.broad.mit.edu/gsea/downloads.jsp&quot;&gt;Downloads&lt;/a&gt; | &lt;a href=&quot;http://www.broad.mit.edu/gsea/msigdb/&quot;&gt;Molecular Signatures Database&lt;/a&gt; | Documentation | &lt;a href=&quot;http://www.broad.mit.edu/gsea/contact.jsp&quot;&gt;Contact&lt;/a&gt; &lt;br /&gt;<br /> &lt;br /&gt;<br /> Release 2.0.3 significantly increases the processing speed of the GSEA algorithm. Our thanks to Justin Guinney of Duke University who submitted this enhancement to the code. There is &lt;strong&gt;no&lt;/strong&gt; &lt;strong&gt;change&lt;/strong&gt; to the GSEA algorithm. This modification simply increases the speed of the algorithm. &lt;br /&gt;<br /> &lt;br /&gt;<br /> &lt;strong&gt;Timing data&lt;/strong&gt;: On Mac OS X version 10.5.4 (2.5 GHz, 4GB RAM), GSEA was launched with 1GB memory. We analyzed the P53_hgu95av2.gct dataset using the full C2 gene set collection and 1000 permutations. Under the previous release, the analysis took 2441 seconds. Under the current release, 662 seconds.&lt;br /&gt;<br /> &lt;br /&gt;<br /> &lt;br /&gt;<br /> &lt;br /&gt;<br /> &lt;br /&gt;<br /> For What's New:&lt;br /&gt;<br /> &lt;br /&gt;<br /> 3/3/2009: Release 2.0.3 of GSEA is now available. The new release significantly increases the processing speed of the GSEA algorithm. To download the latest release, simply launch GSEA from the &lt;a href=&quot;http://www.broad.mit.edu/gsea/downloads.jsp&quot;&gt;Downloads&lt;/a&gt; page. If you have questions, please contact us at: &lt;a href=&quot;mailto:gsea@broad.mit.edu&quot;&gt;gsea@broad.mit.edu&lt;/a&gt;.</div> Tue, 03 Mar 2009 15:23:31 GMT Hkuehn https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:GSEA_v2.0.3_Release_Notes