GSEA v2.0.7 Release Notes

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[http://www.broadinstitute.org/gsea/ GSEA Home] |
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[http://www.broadinstitute.org/gsea/downloads.jsp Downloads] |
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[http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] |
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[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |
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[http://www.broadinstitute.org/gsea/contact.jsp Contact] <br />
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In release 2.0.7, there is <strong>no change</strong>  to the GSEA algorithm.<br />
In release 2.0.7, there is <strong>no change</strong>  to the GSEA algorithm.<br />
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However, if you would like to load v2.5 of MSigDB, you can enter &quot;msigdb_v2.5.xml&quot; in the <em>File path or URL to the MSigDB database</em> and clicking the <em>Load database</em> button.<br />
However, if you would like to load v2.5 of MSigDB, you can enter &quot;msigdb_v2.5.xml&quot; in the <em>File path or URL to the MSigDB database</em> and clicking the <em>Load database</em> button.<br />
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[[ImageLoading_MSigDB25.jpg]]
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[[Image:Loading_MSigDB25.jpg]]<br />
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Note in the figure that both the 3.0 and 2.5 versions of MSigDB have been loaded into the browser.&nbsp; You can toggle between these versions by clicking their respective tabs.

Current revision as of 07:15, 25 September 2016

GSEA Home | Downloads | Molecular Signatures Database | Documentation | Contact

In release 2.0.7, there is no change to the GSEA algorithm.

However, in the MSigDB browser, you can now choose which version of MSigDB you want to load into GSEA.  By default, the MSigDB browser points to v3.0 of MSigDB, and you can load this information by clicking the Load database button.

Image:Loading_MSigDB3.jpg

However, if you would like to load v2.5 of MSigDB, you can enter "msigdb_v2.5.xml" in the File path or URL to the MSigDB database and clicking the Load database button.

Image:Loading_MSigDB25.jpg

Note in the figure that both the 3.0 and 2.5 versions of MSigDB have been loaded into the browser.  You can toggle between these versions by clicking their respective tabs.

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