GSEA v4.3.x Release Notes - Revision history https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&action=history Revision history for this page on the wiki en MediaWiki 1.34.4 Thu, 28 Mar 2024 13:49:57 GMT Eby at 22:17, 3 October 2022 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&diff=4515&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&diff=4515&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:17, 3 October 2022</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l4" >Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[http://www.broadinstitute.org/gsea/contact.jsp Contact]&lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[http://www.broadinstitute.org/gsea/contact.jsp Contact]&lt;br /&gt;</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;br /&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;h2&gt; GSEA Desktop v4.3.2 (Oct 2022)&lt;/h2&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">GSEA v4.3.2 is a bug-fix release to fix another issue with the species-consistency check when working with local files loaded from the user's computer.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td></tr> </table> Mon, 03 Oct 2022 22:17:25 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:GSEA_v4.3.x_Release_Notes Eby at 21:01, 19 September 2022 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&diff=4514&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&diff=4514&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 21:01, 19 September 2022</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l9" >Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>GSEA v4.3.1 is a bug-fix release to fix an issue with the species-consistency check when working with local files loaded from the user's computer.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>GSEA v4.3.1 is a bug-fix release to fix an issue with the species-consistency check when working with local files loaded from the user's computer.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;br /&gt;</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;h2&gt; GSEA Desktop v4.3.0 (Sep 2022)&lt;/h2&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;h2&gt; GSEA Desktop v4.3.0 (Sep 2022)&lt;/h2&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>GSEA v4.3.0 is an update to support the new Mouse MSigDB database and our adjusted versioning scheme.  See the [[MSigDB_v2022.1.Mm_Release_Notes|Mouse 2022.1.Mm release notes]] and  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>GSEA v4.3.0 is an update to support the new Mouse MSigDB database and our adjusted versioning scheme.  See the [[MSigDB_v2022.1.Mm_Release_Notes|Mouse 2022.1.Mm release notes]] and  </div></td></tr> </table> Mon, 19 Sep 2022 21:01:52 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:GSEA_v4.3.x_Release_Notes Eby at 20:59, 19 September 2022 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&diff=4513&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&diff=4513&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 20:59, 19 September 2022</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l6" >Line 6:</td> <td colspan="2" class="diff-lineno">Line 6:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;h2&gt; GSEA Desktop v4.3.1 (Sep 2022)&lt;/h2&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">GSEA v4.3.1 is a bug-fix release to fix an issue with the species-consistency check when working with local files loaded from the user's computer.</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;h2&gt; GSEA Desktop v4.3.0 (Sep 2022)&lt;/h2&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;h2&gt; GSEA Desktop v4.3.0 (Sep 2022)&lt;/h2&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>GSEA v4.3.0 is an update to support the new Mouse MSigDB database and our adjusted versioning scheme.  See the [[MSigDB_v2022.1.Mm_Release_Notes|Mouse 2022.1.Mm release notes]] and  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>GSEA v4.3.0 is an update to support the new Mouse MSigDB database and our adjusted versioning scheme.  See the [[MSigDB_v2022.1.Mm_Release_Notes|Mouse 2022.1.Mm release notes]] and  </div></td></tr> </table> Mon, 19 Sep 2022 20:59:41 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:GSEA_v4.3.x_Release_Notes Eby: Created page with '[http://www.broadinstitute.org/gsea/ GSEA Home] | [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures…' https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&diff=4496&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=GSEA_v4.3.x_Release_Notes&diff=4496&oldid=prev <p>Created page with &#039;[http://www.broadinstitute.org/gsea/ GSEA Home] | [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures…&#039;</p> <p><b>New page</b></p><div>[http://www.broadinstitute.org/gsea/ GSEA Home] |<br /> [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | <br /> [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] | <br /> [http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |<br /> [http://www.broadinstitute.org/gsea/contact.jsp Contact]&lt;br /&gt;<br /> <br /> &lt;br /&gt;<br /> &lt;h2&gt; GSEA Desktop v4.3.0 (Sep 2022)&lt;/h2&gt;<br /> GSEA v4.3.0 is an update to support the new Mouse MSigDB database and our adjusted versioning scheme. See the [[MSigDB_v2022.1.Mm_Release_Notes|Mouse 2022.1.Mm release notes]] and <br /> [[MSigDB_v2022.1.Hs_Release_Notes|Human 2022.1.Hs release notes]] for more details about the changes to MSigDB.<br /> <br /> Users will notice a change in the tabs of both the Gene Set chooser and the CHIP chooser available from the Run GSEA and Run Preranked screens. These allow selecting either Human or Mouse oriented files from the MSigDB servers, to assist users in both choosing the correct files for their analysis and to ensure they are not improperly mixing these files (e.g. using a Mouse CHIP with a Human GMT, etc). Such mixing of files meant for different species will result in an error when it is detected.<br /> <br /> These file choosers will also give a new warning when they detect the mixing of files from different versions of MSigDB, even when the species matches.<br /> <br /> We have made the decision for now that GSEA will only make such checks on files coming directly from the MSigDB servers within that session. That is, GSEA will not make these checks on any files loaded from the user's computer through the Load Data screen since we can't guarantee the contents or naming of these files.</div> Wed, 07 Sep 2022 20:37:31 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:GSEA_v4.3.x_Release_Notes