MSigDB v5.2 Release Notes

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<p>This page describes the changes made to the gene set collections for Release 5.2 of the Molecular Signatures Database (MSigDB).</p>
<p>This page describes the changes made to the gene set collections for Release 5.2 of the Molecular Signatures Database (MSigDB).</p>
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     <li><strong>CP</strong>: canonical pathways.</li>
     <li><strong>CP</strong>: canonical pathways.</li>
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<h3>C5: GO gene sets (-1454 + 6166)</h3>
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<h3>C5: GO gene sets (+4712)</h3>
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<p> Gene sets in this new collection are derived from the controlled vocabulary of the Gene Ontology (GO) project: The Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nature Genet. (2000) 25: 25-29 (http://www.geneontology.org/). The gene sets are named by GO term and contain genes annotated by that term.</p>
<p> Gene sets in this new collection are derived from the controlled vocabulary of the Gene Ontology (GO) project: The Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nature Genet. (2000) 25: 25-29 (http://www.geneontology.org/). The gene sets are named by GO term and contain genes annotated by that term.</p>
<p>This collection is divided into three subcollections:</p>
<p>This collection is divided into three subcollections:</p>
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     <li><strong>CC</strong>: GO Cellular component (+233 gene sets). Gene sets derived from the Cellular Component Ontology.</li>
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     <li><strong>CC</strong>: GO Cellular component (+584 gene sets). Gene sets derived from the Cellular Component Ontology.</li>
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     <li><strong>MF</strong>: GO Molecular function (+396 gene sets). Gene sets derived from the Molecular Function Ontology.</li>
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     <li><strong>MF</strong>: GO Molecular function (+929 gene sets). Gene sets derived from the Molecular Function Ontology.</li>
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     <li><strong>BP</strong>: GO Biological process (+825 gene sets). Gene sets derived from the Biological Process Ontology.</li>
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     <li><strong>BP</strong>: GO Biological process (+4653 gene sets). Gene sets derived from the Biological Process Ontology.</li>
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<p>&nbsp;<strong>GSEA users</strong>: Gene set enrichment analysis identifies gene sets consisting of co-regulated genes; GO gene sets are based on ontologies and do not generally consist of co-regulated genes.</p>
<p>&nbsp;<strong>GSEA users</strong>: Gene set enrichment analysis identifies gene sets consisting of co-regulated genes; GO gene sets are based on ontologies and do not generally consist of co-regulated genes.</p>

Revision as of 18:46, 5 October 2016

GSEA Home | Downloads | Molecular Signatures Database | Documentation | Contact

This page describes the changes made to the gene set collections for Release 5.2 of the Molecular Signatures Database (MSigDB).


Contents

C2: Curated gene sets (+4)

  • CGP: chemical and genetic perturbations (+4 gene sets).
  • CP: canonical pathways.

C5: GO gene sets (+4712)

Gene sets in this new collection are derived from the controlled vocabulary of the Gene Ontology (GO) project: The Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nature Genet. (2000) 25: 25-29 (http://www.geneontology.org/). The gene sets are named by GO term and contain genes annotated by that term.

This collection is divided into three subcollections:

  • CC: GO Cellular component (+584 gene sets). Gene sets derived from the Cellular Component Ontology.
  • MF: GO Molecular function (+929 gene sets). Gene sets derived from the Molecular Function Ontology.
  • BP: GO Biological process (+4653 gene sets). Gene sets derived from the Biological Process Ontology.

 GSEA users: Gene set enrichment analysis identifies gene sets consisting of co-regulated genes; GO gene sets are based on ontologies and do not generally consist of co-regulated genes.

C6 gene sets

C7 gene sets

For more information

For complete descriptions of all collections or to download the updated gene sets, go to the Browse Collections page.

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