Difference between revisions of "Main Page"

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<h1><a name="_Toc127331830">Header and Footer</a></h1>
 
<h1><a name="_Toc127331830">Header and Footer</a></h1>
 
<p class="MsoNormal">The headers and footers would normally come over to html, but just for completeness, those formats would be</p>
 
<p class="MsoNormal">The headers and footers would normally come over to html, but just for completeness, those formats would be</p>
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->Header: <span class="HeaderChar">header text</span></p>
+
<ul>
<p class="MsoListBullet"><!--[if !supportLists]--><span class="FooterChar"><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span></span><!--[endif]-->Footer: <span class="FooterChar">footer text<o:p></o:p></span></p>
+
    <li><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]-->Header: <span class="HeaderChar">header text</span></li>
 +
    <li><!--[if !supportLists]--><span class="FooterChar"><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span></span><!--[endif]-->Footer: <span class="FooterChar">footer text<o:p></o:p></span></li>
 +
</ul>
 
<h1><a name="_Toc127331831">Tables and Graphics</a></h1>
 
<h1><a name="_Toc127331831">Tables and Graphics</a></h1>
 
<p class="MsoNormal">Tables need to come over cleanly. It&rsquo;s hard to capture all formats, but here&rsquo;s a basic table:</p>
 
<p class="MsoNormal">Tables need to come over cleanly. It&rsquo;s hard to capture all formats, but here&rsquo;s a basic table:</p>
<table cellspacing="0" cellpadding="0" border="1" style="border: medium none ; border-collapse: collapse;" class="MsoTableGrid">
+
<table cellspacing="0" cellpadding="0" border="1" class="MsoTableGrid" style="border: medium none ; border-collapse: collapse;">
 
     <tbody>
 
     <tbody>
 
         <tr style="">
 
         <tr style="">
Line 18: Line 20:
 
             <td width="319" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 239.4pt;">
 
             <td width="319" valign="top" style="border-style: none solid solid; border-color: -moz-use-text-color windowtext windowtext; border-width: medium 1pt 1pt; padding: 0in 5.4pt; width: 239.4pt;">
 
             <p class="MsoNormal">Blah, blah, blah.</p>
 
             <p class="MsoNormal">Blah, blah, blah.</p>
             <p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span></span><!--[endif]-->Bulleted stuff, stuff, stuff.</p>
+
             <ul>
            <p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span></span><!--[endif]-->Stuff, stuff, stuff.</p>
+
                <li><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span></span><!--[endif]-->Bulleted stuff, stuff, stuff.</li>
 +
                <li><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span></span><!--[endif]-->Stuff, stuff, stuff.</li>
 +
            </ul>
 
             </td>
 
             </td>
 
             <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 
             <td width="319" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 239.4pt;">
 
             <p class="MsoNormal">Blah, blah, blah.</p>
 
             <p class="MsoNormal">Blah, blah, blah.</p>
             <p style="" class="MsoListNumber"><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span><!--[endif]-->Numbered stuff, stuff, stuff.</p>
+
             <p class="MsoListNumber" style=""><!--[if !supportLists]--><span style="">1.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;  </span></span><!--[endif]-->Numbered stuff, stuff, stuff.</p>
 
             <p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->Stuff,  stuff, stuff.</p>
 
             <p class="MsoListNumber"><!--[if !supportLists]--><span style="">2.<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><!--[endif]-->Stuff,  stuff, stuff.</p>
 
             </td>
 
             </td>
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<v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
<v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
o:href="images/icon-file-res.gif" />
 
o:href="images/icon-file-res.gif" />
</v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1025" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" /><!--[endif]--></p>
+
</v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" v:shapes="_x0000_i1025" /><!--[endif]--></p>
 
<p class="MsoNormal">In rare cases, graphics appear in tables. Here&rsquo;s an example:</p>
 
<p class="MsoNormal">In rare cases, graphics appear in tables. Here&rsquo;s an example:</p>
<table cellspacing="0" cellpadding="0" border="1" style="border: medium none ; margin-left: 5.4pt; border-collapse: collapse;" class="MsoTableGrid">
+
<table cellspacing="0" cellpadding="0" border="1" class="MsoTableGrid" style="border: medium none ; margin-left: 5.4pt; border-collapse: collapse;">
 
     <tbody>
 
     <tbody>
 
         <tr style="">
 
         <tr style="">
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             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image001.gif"
 
             o:href="images/icon-file-res.gif" />
 
             o:href="images/icon-file-res.gif" />
             </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1026" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" alt="" /><!--[endif]--></p>
+
             </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" v:shapes="_x0000_i1026" /><!--[endif]--></p>
 
             </td>
 
             </td>
 
             <td width="559" valign="top" style="border-style: solid solid solid none; border-color: windowtext windowtext windowtext -moz-use-text-color; border-width: 1pt 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
             <td width="559" valign="top" style="border-style: solid solid solid none; border-color: windowtext windowtext windowtext -moz-use-text-color; border-width: 1pt 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
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             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image002.gif"
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image002.gif"
 
             o:href="images/icon-file-gct.gif" />
 
             o:href="images/icon-file-gct.gif" />
             </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" v:shapes="_x0000_i1027" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" alt="" /><!--[endif]--></p>
+
             </v:shape><![endif]--><!--[if !vml]--><img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" v:shapes="_x0000_i1027" /><!--[endif]--></p>
 
             </td>
 
             </td>
 
             <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
             <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
Line 97: Line 101:
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image003.gif"
 
             <v:imagedata src="file:///C:\DOCUME~1\Aravind\LOCALS~1\Temp\msohtml1\01\clip_image003.gif"
 
             o:href="images/icon-file-pcl.gif" />
 
             o:href="images/icon-file-pcl.gif" />
             </v:shape><![endif]--><!--[if !vml]--><img width="18" height="18" v:shapes="_x0000_i1028" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" alt="" /><!--[endif]--></p>
+
             </v:shape><![endif]--><!--[if !vml]--><img width="18" height="18" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" v:shapes="_x0000_i1028" /><!--[endif]--></p>
 
             </td>
 
             </td>
 
             <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
 
             <td width="559" valign="top" style="border-style: none solid solid none; border-color: -moz-use-text-color windowtext windowtext -moz-use-text-color; border-width: medium 1pt 1pt medium; padding: 0in 5.4pt; width: 419.4pt;">
Line 108: Line 112:
 
<p class="MsoNormal">The introduction to each section that has subsections, should provide hyperlinks to the subsections. </p>
 
<p class="MsoNormal">The introduction to each section that has subsections, should provide hyperlinks to the subsections. </p>
 
<p class="MsoNormal">This section describes how to work with project directories in GenePattern:</p>
 
<p class="MsoNormal">This section describes how to work with project directories in GenePattern:</p>
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><a href="#_Opening_a_Project_Directory">Projects Pane</a></p>
+
<ul>
<p class="MsoListBullet"><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a></p>
+
    <li><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><a href="#_Opening_a_Project_Directory">Projects Pane</a></li>
 +
    <li><!--[if !supportLists]--><span style="font-family: Symbol;"><span style="">&middot;<span style="font-family: &quot;Times New Roman&quot;; font-style: normal; font-variant: normal; font-weight: normal; font-size: 7pt; line-height: normal; font-size-adjust: none; font-stretch: normal;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a></li>
 +
</ul>

Revision as of 12:37, 21 March 2006

<a name="_Toc127331830">Header and Footer</a>

The headers and footers would normally come over to html, but just for completeness, those formats would be

  • ·         Header: header text
  • ·         Footer: footer text<o:p></o:p>

<a name="_Toc127331831">Tables and Graphics</a>

Tables need to come over cleanly. It’s hard to capture all formats, but here’s a basic table:

<tbody> </tbody>

Column Header<o:p></o:p>

Column Header<o:p></o:p>

Blah, blah, blah.

  • ·         Bulleted stuff, stuff, stuff.
  • ·         Stuff, stuff, stuff.

Blah, blah, blah.

1.      Numbered stuff, stuff, stuff.

2.      Stuff, stuff, stuff.

Blah, blah, blah.

Blah, blah, blah.

<o:p> </o:p>

In Word, graphics are linked in files. They also need to come over:

<img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" v:shapes="_x0000_i1025" />

In rare cases, graphics appear in tables. Here’s an example:

<tbody> </tbody>

<img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image001.gif" v:shapes="_x0000_i1026" />

Expression dataset (res)

<img width="19" height="19" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image002.gif" v:shapes="_x0000_i1027" />

Expression dataset (gct)

<img width="18" height="18" alt="" src="file:///C:/DOCUME~1/Aravind/LOCALS~1/Temp/msohtml1/01/clip_image003.gif" v:shapes="_x0000_i1028" />

Expression dataset (pcl)

<a name="_Toc127331832">Content</a>

The introduction to each section that has subsections, should provide hyperlinks to the subsections.

This section describes how to work with project directories in GenePattern:

  • ·         <a href="#_Opening_a_Project_Directory">Projects Pane</a>
  • ·         <a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a>