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<a name="_Toc127331825">Heading 1</a>
● For variables (this looks the same as GUI, but might in the future): br_variable
Test: HTML code, HTML variable, plain.
● For variables (this looks the same as GUI, but might in the future): br_variable
java -cp full-path/gsea.jar -Xmx512m gsea-tool parameters
● For variables (this looks the same as GUI, but might in the future): br_variable
<o:p></o:p>
● For variables (this looks the same as GUI, but might in the future): br_variable
● For variables (this looks the same as GUI, but might in the future): br_variable
Plain, emphasis, gui, italic
Within paragraph text, we use a number of character formats:
● Hyperlinks: hyperlink
● Code and file names: br_code<o:p></o:p>
● For GUI items, like menus and buttons: br_GUI<o:p></o:p>
● For menus, we use angle brackets, which need to be preserved: File>Open.
● For variables (this looks the same as GUI, but might in the future): br_variable<o:p></o:p>
● For various reasons, most formats can be bold. So bold needs to be preserved.
Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, br_code, br_GUI, br_variable<o:p></o:p>
Bold formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, br_code, br_GUI, br_variable
Within paragraph text, we use a number of character formats:
● Hyperlinks: hyperlink
● Code and file names: br_code<o:p></o:p>
● For GUI items, like menus and buttons: br_GUI<o:p></o:p>
● For menus, we use angle brackets, which need to be preserved: File>Open.
● For variables (this looks the same as GUI, but might in the future): br_variable<o:p></o:p>
● For various reasons, most formats can be bold. So bold needs to be preserved.
Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, br_code, br_GUI, br_variable<o:p></o:p>
Bold formats: <st1:city w:st="on"><st1:place w:st="on">Normal</st1:place></st1:city>, br_code, br_GUI, br_variable
Normal formats: <st1:place w:st="on"><st1:city w:st="on">Normal</st1:city></st1:place>, br_code, br_GUI, br_variable<o:p></o:p>
Bold formats: <st1:city w:st="on"><st1:place w:st="on">Normal</st1:place></st1:city>, br_code, br_GUI, br_variable<o:p></o:p>
<o:p></o:p>
<o:p></o:p>
<a name="_Toc127331828">Bulleted and Numbered Lists</a>
For bulleted lists, use
● List Bullet
● List Bullet
List Continue
■ List Bullet 2
■ List Bullet 2
List Continue 2
● List Bullet
For numbered lists, use:
1. List number.
2. List number.
List Continue
1. List number 2
2. List number 2
List Continue 2
3. List number.
1. List number 2.
2. List number 2.
4. List number.
Numbered and bulleted lists can be mixed:
1. List number:
■ List Bullet 2
List Continue 2
■ List Bullet 2
List Continue 2
2. List number.
1. List number 2
2. List number 2
List Continue 2
3. List number.
Tables need to come over cleanly. It’s hard to capture all formats, but here’s a basic table:
<tbody> </tbody>|
Column Header<o:p></o:p> |
Column Header<o:p></o:p> |
|
Blah, blah, blah.
|
Blah, blah, blah. 1. Numbered stuff, stuff, stuff. 2. Stuff, stuff, stuff. |
|
Blah, blah, blah. |
Blah, blah, blah. |
<o:p> </o:p>
In Word, graphics are linked in files. They also need to come over:
In rare cases, graphics appear in tables. Here’s an example:
<tbody> </tbody>|
[[images/icon-file-res.gif]] |
Expression dataset (res) |
|
[[images/icon-file-res.gif]] |
Expression dataset (gct) |
|
[[images/icon-file-res.gif]] |
Expression dataset (pcl) |
<a name="_Toc127331832">Content</a>
The introduction to each section that has subsections, should provide hyperlinks to the subsections.
This section describes how to work with project directories in GenePattern:
- <a href="#_Opening_a_Project_Directory">Projects Pane</a>
- <a href="#_Opening_a_Project_Directory_1">Opening a Project Directory</a>
