Mapping between v3.1 and v3.0 gene sets

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Revision as of 19:28, 2 October 2012 by Liberzon (talk | contribs)
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This page only includes gene sets from v3.0 with direct counterparts in v3.1, or sets that became deprecated in v3.1.

C2 collection

<tbody> </tbody>
v3.0 (old) v3.1 (new)
HOLLMAN_APOPTOSIS_VIA_CD40_UP HOLLMANN_APOPTOSIS_VIA_CD40_UP
HOLLMAN_APOPTOSIS_VIA_CD40_DN HOLLMANN_APOPTOSIS_VIA_CD40_DN
FARMER_BREAST_CANCER_APOCRINE VS LUMINAL FARMER_BREAST_CANCER_APOCRINE_VS_LUMINAL
SCHWAB_TARGETS_OF_BMYB_S427G_UP SCHWAB_TARGETS_OF_BMYB_POLYMORPHIC_VARIANTS_UP
SCHWAB_TARGETS_OF_BMYB_S427G_DN SCHWAB_TARGETS_OF_BMYB_POLYMORPHIC_VARIANTS_DN
IIZUKA_RECURRENT_LIVER_CANCER IIZUKA_LIVER_CANCER_EARLY_RECURRENCE
WELCSH_BRCA1_TARGETS_1_UP WELCSH_BRCA1_TARGETS_UP
WELCSH_BRCA1_TARGETS_1_DN WELCSH_BRCA1_TARGETS_DN
FOSTER_INFLAMMATORY_RESPONSE_LPS_UP FOSTER_TOLERANT_MACROPHAGE_UP
FOSTER_INFLAMMATORY_RESPONSE_LPS_DN FOSTER_TOLERANT_MACROPHAGE_DN
KAPOSI_LIVER_CANCER_POOR_SURVIVAL_UP KAPOSI_LIVER_CANCER_MET_UP
KAPOSI_LIVER_CANCER_POOR_SURVIVAL_DN KAPOSI_LIVER_CANCER_MET_DN
KORKOLA_TERATOMA_DN deprecated: over 90% identity to another set
KORKOLA_YOLK_SAC_TUMOR_DN deprecated: over 90% identity to another set
ZHOU_INFLAMMATORY_RESPONSE_LPS_DN deprecated: over 90% identity to another set
NAKAMURA_LUNG_CANCER_MARKERS deprecated: over 90% identity to another set
FARMER_BREAST_CANCER_CLUSTER_3 deprecated: over 90% identity to another set
FINETTI_BREAST_CANCER_BASAL_VS_LUMINAL deprecated: over 90% identity to another set
GRESHOCK_CANCER_COPY_NUMBER_DN deprecated: over 90% identity to another set
RUNNE_GENDER_EFFECT_DN deprecated: size < 5 after mapping to human Entrez Gene IDs
TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_SUSTAINDED_IN_ERYTHROCYTE_DN deprecated: size < 5 after mapping to human Entrez Gene IDs
MUELLER_X_LINKED_COPY_NUMBER_UP deprecated: size < 5 after mapping to human Entrez Gene IDs
MUELLER_X_LINKED_COPY_NUMBER_DN deprecated: size < 5 after mapping to human Entrez Gene IDs
VICENT_METASTASIS_DN deprecated: size < 5 after mapping to human Entrez Gene IDs
ACEVEDO_METHYLATED_IN_LIVER_CANCER_UP deprecated: size > 2,000 after mapping to human Entrez Gene IDs
BOYAULT_LIVER_CANCER_SUBCLASS_G5_UP deprecated: size < 5 after mapping to human Entrez Gene IDs
GUTIERREZ_MULTIPLE_MYELOMA_UP deprecated: size < 5 after mapping to human Entrez Gene IDs
GOVONI_GH1_TARGETS_24HR_DN deprecated: size < 5 after mapping to human Entrez Gene IDs
RUGO_ENVIRONMENTAL_STRESS_RESPONSE_UP deprecated: the set has incorrect PMID and contains original members from another set
RUGO_RESPONSE_TO_4NQO deprecated: the set has incorrect PMID and contains original members from another set
RUGO_RESPONSE_TO_GAMMA_RADIATION deprecated: the set has incorrect PMID and contains original members from another set
RUGO_STRESS_RESPONSE_SUBSET_F deprecated: the set has incorrect PMID and contains original members from another set
RUGO_STRESS_RESPONSE_SUBSET_G deprecated: the set has incorrect PMID and contains original members from another set
RUGO_STRESS_RESPONSE_SUBSET_H deprecated: the set has incorrect PMID and contains original members from another set
RUGO_UV_RESPONSE deprecated: the set has incorrect PMID and contains original members from another set
SCHWAB_TARGETS_OF_BMYB_I624M_UP deprecated after review
SCHWAB_TARGETS_OF_BMYB_I624M_DN deprecated after review
TOOKER_RESPONSE_TO_BEXAROTENE_UP deprecated after review
TOOKER_RESPONSE_TO_BEXAROTENE_DN deprecated after review
HSC_MATURE_FETAL deprecated after review
LEE_LIVER_CANCER_TOP50 deprecated after review

C4 collection

<tbody>

</tbody>

v3.0 (old) v3.1 (new)
module_1MODULE_1
module_2MODULE_2
module_3MODULE_3
module_4MODULE_4
module_5MODULE_5
module_6MODULE_6
module_7MODULE_7
module_8MODULE_8
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module_503MODULE_503
module_505MODULE_505
module_509MODULE_509
module_511MODULE_511
module_512MODULE_512
module_514MODULE_514
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module_519MODULE_519
module_521MODULE_521
module_522MODULE_522
module_524MODULE_524
module_525MODULE_525
module_528MODULE_528
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module_537MODULE_537
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module_547MODULE_547
module_552MODULE_552
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module_562MODULE_562
module_563MODULE_563
module_567MODULE_567
module_568MODULE_568
module_571MODULE_571
module_573MODULE_573
module_575MODULE_575
module_576MODULE_576
module_0deprecated: size < 10 after mapping to human Entrez Gene IDs
module_31deprecated: size < 10 after mapping to human Entrez Gene IDs
module_140deprecated: size < 10 after mapping to human Entrez Gene IDs
module_144deprecated: size < 10 after mapping to human Entrez Gene IDs
module_185deprecated: size < 10 after mapping to human Entrez Gene IDs
module_216deprecated: size < 10 after mapping to human Entrez Gene IDs
module_224deprecated: size < 10 after mapping to human Entrez Gene IDs
module_231deprecated: size < 10 after mapping to human Entrez Gene IDs
module_251deprecated: size < 10 after mapping to human Entrez Gene IDs
module_260deprecated: size < 10 after mapping to human Entrez Gene IDs
module_283deprecated: size < 10 after mapping to human Entrez Gene IDs
module_376deprecated: size < 10 after mapping to human Entrez Gene IDs
module_390deprecated: size < 10 after mapping to human Entrez Gene IDs
module_391deprecated: size < 10 after mapping to human Entrez Gene IDs
module_423deprecated: size < 10 after mapping to human Entrez Gene IDs
module_428deprecated: size < 10 after mapping to human Entrez Gene IDs
module_441deprecated: size < 10 after mapping to human Entrez Gene IDs
module_450deprecated: size < 10 after mapping to human Entrez Gene IDs
module_467deprecated: size < 10 after mapping to human Entrez Gene IDs
module_482deprecated: size < 10 after mapping to human Entrez Gene IDs
module_496deprecated: size < 10 after mapping to human Entrez Gene IDs
module_513deprecated: size < 10 after mapping to human Entrez Gene IDs
module_538deprecated: size < 10 after mapping to human Entrez Gene IDs
Retrieved from "https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Mapping_between_v3.1_and_v3.0_gene_sets&oldid=3398"