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| | + | [http://www.broadinstitute.org/gsea/ GSEA Home] | |
| | + | [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | |
| | + | [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] | |
| | + | [http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] | |
| | + | [http://www.broadinstitute.org/gsea/contact.jsp Contact] |
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| − | <pre>" <?xml version="1.0" encoding="UTF-8"?><br />" <!--<br />" This is the DTD for MSigDB.<br />" It describes a format for a database of gene sets that captures<br />" both the content of a gene set (i.e gene members) as well as annotation about<br />" the gene set.<br />" @VERSION 1.0 May 2006<br />" @AUTHOR Aravind Subramanian<br />" --><br />" <!DOCTYPE MSIGDB [<br />" <!ELEMENT MSIGDB GENESET* -- top level container --><br />" <!ATTLIST MSIGDB<br />" NAME CDATA #REQUIRED -- name of the database<br />" VERSION CDATA #REQUIRED -- version of the database<br />" ><br />" <br />" <!ELEMENT GENESET -- a single gene set --><br />" <!ATTLIST GENESET<br />" STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br />" SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br />" ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br />" EXTERNAL_DETAILS_URL CDATA -- 3rd party url for more info<br />" CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br />" CATEGORY_CODE CDATA (C1|C2|C3|C4)<br />" SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br />" CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br />" PMID CDATA -- PubMed ID if available<br />" GEOID CDATA -- GEO ID if available<br />" DESCRIPTION CDATA -- a full detailed desc or abstract<br />" DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br />" %MESH CDATA -- keywords and MESH identifiers<br />" %MEMBERS CDATA #REQUIRED -- Genes in the native format<br />" %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols<br />" ><br />" ]></pre>
| + | <br /> |
| | + | Following is the dtd for MSigDB. <br /> |
| | + | To download the DTD, click [http://www.broadinstitute.org/gsea/dtd/msigdb.dtd.txt here].<br /> |
| | + | <br /> |
| | + | [[image:Msigdb_dtd_v2.png]] |
Latest revision as of 03:54, 25 September 2016
