Difference between revisions of "Msigdb dtd"
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| + | <pre> STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br /> SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br /> ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br /> EXTERNAL_DETAILS_URL CDATA -- 3rd party url for more info<br /> CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br /> CATEGORY_CODE CDATA (C1|C2|C3|C4)<br /> SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br /> CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br /> PMID CDATA -- PubMed ID if available<br /> GEOID CDATA -- GEO ID if available<br /> DESCRIPTION CDATA -- a full detailed desc or abstract<br /> DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br /> %MESH CDATA -- keywords and MESH identifiers<br /> %MEMBERS CDATA #REQUIRED -- Genes in the native format<br /> %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols</pre> | ||
Revision as of 12:51, 24 March 2006
STANDARD_NAME CDATA #REQUIRED -- an english name for the gene set<br /> SYSTEMATIC_NAME CDATA #REQUIRED -- a systematized identifier<br /> ORGANISM CDATA #REQUIRED -- organism in which the geneset was generated<br /> EXTERNAL_DETAILS_URL CDATA -- 3rd party url for more info<br /> CHIP CDATA #REQUIRED -- platform on which the geneset was generated<br /> CATEGORY_CODE CDATA (C1|C2|C3|C4)<br /> SUB_CATEGORY_CODE CDATA (CYTO|PATH|ONTO|CURT|PERT|MODL|CLIN|REPM|TFAC|NEGH) <br /> CONTRIBUTOR CDATA #REQUIRED -- name of person/database that curated the set<br /> PMID CDATA -- PubMed ID if available<br /> GEOID CDATA -- GEO ID if available<br /> DESCRIPTION CDATA -- a full detailed desc or abstract<br /> DESCRIPTION_BRIEF CDATA #REQUIRED -- a brief 1 line description<br /> %MESH CDATA -- keywords and MESH identifiers<br /> %MEMBERS CDATA #REQUIRED -- Genes in the native format<br /> %MEMBERS_SYMBOLIZED CDATA #REQUIRED -- Genes after converting to gene symbols
