Msigdb mapping v2.5 to v3

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This page only includes gene sets from v2.5 with direct counterparts in v3.0, or that have been deprecated in v3.0, not any of the new gene sets.

Gene set names are case insensitive.

C1 collection

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v2.5 (old)
 v3.0 (new)
chr16qdeprecated
chr4pdeprecated
chr1q13deprecated
chr4q1deprecated
chr15p13deprecated
chr2q1deprecated
chr14p13deprecated
chr13p13deprecated
chr12q13q14deprecated
chr20pdeprecated
chr19q11deprecated
chr8pdeprecated
chr22p13deprecated
chr13p11deprecated
chr9p1deprecated
chr21qdeprecated
chr22pdeprecated
chr19p11deprecated
chr18p12deprecated
chr1q3deprecated
chr6q11deprecated
chr19q31deprecated
chr21p12deprecated
chr16q2deprecated
chr15p12deprecated
chr7q12deprecated
chr1q11deprecated
chr6q13q15deprecated
chr14p11deprecated
chr11q1deprecated
chrxp13deprecated
chr9q11deprecated
chr18qdeprecated
chr5q2deprecated
chr13qdeprecated
chr15q12deprecated
chr20qdeprecated
chr11p1deprecated
chrxpdeprecated
chr20p21deprecated
chr14p12deprecated
chr20q21deprecated
chr13p12deprecated
chr15q33deprecated
chr1q4deprecated
chr5pdeprecated
chr6q28deprecated
chr17pdeprecated
chr15q2deprecated
chr21pdeprecated
chr22p12deprecated
chr10pdeprecated
chr9qdeprecated
chr11q32deprecated
chr17p31deprecated
chr17q13deprecated
chryq12deprecated
chr8p24deprecated
chr5p11deprecated
chr21p22deprecated

C2 collection

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v2.5 (old)
 v3.0 (new)
CHESLER_D6MIT150_TRANSCRIPTION_FACTORS_GLOCUSdeprecated
DEATHPATHWAYBIOCARTA_DEATH_PATHWAY
MRNA_PROCESSINGdeprecated
LE_MYELIN_DNLE_EGR2_TARGETS_DN
TCAPOPTOSISPATHWAYBIOCARTA_TCAPOPTOSIS_PATHWAY
MRNA_PROCESSING_REACTOMEdeprecated
ATP_SYNTHESISdeprecated
ROSS_CBFROSS_AML_OF_CBF_TYPE
AGUIRRE_PANCREAS_CHR12deprecated
CCR3PATHWAYBIOCARTA_CCR3_PATHWAY
NEUTROPHILPATHWAYdeprecated
INOSITOL_METABOLISMdeprecated
TRYPTOPHAN_METABOLISMdeprecated
ELECTRON_TRANSPORTER_ACTIVITYdeprecated
ACETYLCHOLINE_SYNTHESISdeprecated
ALTERNATIVEPATHWAYdeprecated
BYSTRYKH_SCP2_CIS_TRANSCRIPTS_GLOCUSBYSTRYKH_SCP2_QTL
PGC1APATHWAYBIOCARTA_PGC1A_PATHWAY
ST_INTERFERON_GAMMA_PATHWAYdeprecated
HUMAN_MITODB_6_2002MOOTHA_HUMAN_MITODB_6_2002
CITRATE_CYCLE_TCA_CYCLEdeprecated
ST_WNT_CA2_CYCLIC_GMP_PATHWAYdeprecated
BIOSYNTHESIS_OF_STEROIDSdeprecated
KENNY_WNT_UPKENNY_CTNNB1_TARGETS_UP
TYPE_III_SECRETION_SYSTEMdeprecated
TGF_BETA_SIGNALING_PATHWAYdeprecated
PMLPATHWAYBIOCARTA_PML_PATHWAY
CHEOK_MP_DNCHEOK_RESPONSE_TO_MERCAPTOPURINE_DN
CALCINEURINPATHWAYBIOCARTA_CALCINEURIN_PATHWAY
ST_INTERLEUKIN_13_PATHWAYdeprecated
PANTOTHENATE_AND_COA_BIOSYNTHESISdeprecated
AGUIRRE_PANCREAS_CHR9deprecated
RANPATHWAYdeprecated
GLYCEROPHOSPHOLIPID_METABOLISMdeprecated
RANKLPATHWAYBIOCARTA_RANKL_PATHWAY
D4GDIPATHWAYBIOCARTA_D4GDI_PATHWAY
NELSON_ANDROGEN_DNNELSON_RESPONSE_TO_ANDROGEN_DN
ICHIBA_GVHDdeprecated
NITROGEN_METABOLISMdeprecated
KREBPATHWAYBIOCARTA_KREB_PATHWAY
JISON_SICKLE_CELLdeprecated
TARTE_PCTARTE_PLASMA_CELL_VS_B_LYMPHOCYTE_UP
BYSTROM_IL5_DNBYSTROEM_CORRELATED_WITH_IL5_DN
ST_DIFFERENTIATION_PATHWAY_IN_PC12_CELLSdeprecated
CORDERO_KRAS_KD_VS_CONTROL_DNSWEET_KRAS_TARGETS_DN
TERCPATHWAYdeprecated
TNFR1PATHWAYBIOCARTA_TNFR1_PATHWAY
OVARIAN_INFERTILITY_GENESdeprecated
SHEPARD_CRASH_AND_BURN_MUT_VS_WT_UPSHEPARD_CRUSH_AND_BURN_MUTANT_UP
INTRINSICPATHWAYBIOCARTA_INTRINSIC_PATHWAY
RARRXRPATHWAYBIOCARTA_RARRXR_PATHWAY
EXTRINSICPATHWAYBIOCARTA_EXTRINSIC_PATHWAY
ECMPATHWAYBIOCARTA_ECM_PATHWAY
BRENTANI_IMMUNE_FUNCTIONdeprecated
HOX_GENESdeprecated
ZHAN_TONSIL_PCBCdeprecated
KREBS_TCA_CYCLEdeprecated
ELECTRON_TRANSPORT_CHAINdeprecated
RASPATHWAYBIOCARTA_RAS_PATHWAY
SKP2E2FPATHWAYBIOCARTA_SKP2E2F_PATHWAY
ROSS_PML_RARROSS_AML_WITH_PML_RARA_FUSION
ST_TUMOR_NECROSIS_FACTOR_PATHWAYdeprecated
NO2IL12PATHWAYBIOCARTA_NO2IL12_PATHWAY
GLEEVECPATHWAYBIOCARTA_GLEEVEC_PATHWAY
ZUCCHI_EPITHELIAL_DNZUCCHI_METASTASIS_DN
SA_PTEN_PATHWAYdeprecated
CIRCADIANPATHWAYdeprecated
LEI_HOXC8_UPLEI_HOXC8_TARGETS_DN
BBCELLPATHWAYdeprecated
KERATINOCYTEPATHWAYBIOCARTA_KERATINOCYTE_PATHWAY
CELL_MOTILITYdeprecated

Under construction

C3 collection

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v2.5 (old)
 v3.0 (new)
GAGACGG,MIR-340deprecated

C4 collection

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v2.5 (old)
 v3.0 (new)
module_383deprecated
module_498deprecated

C5 collection

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</tbody>

v2.5 (old)
 v3.0 (new)
CHROMOSOME__PERICENTRIC_REGIONCHROMOSOMEPERICENTRIC_REGION
DNA_DIRECTED_RNA_POLYMERASE_II__CORE_COMPLEXDNA_DIRECTED_RNA_POLYMERASEII_CORE_COMPLEX
DNA_DIRECTED_RNA_POLYMERASE_II__HOLOENZYMEDNA_DIRECTED_RNA_POLYMERASEII_HOLOENZYME
NEGATIVE_REGULATION_OF_NUCLEOBASE__NUCLEOSIDE__NUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESSNEGATIVE_REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS
NUCLEOBASE__NUCLEOSIDE_AND_NUCLEOTIDE_METABOLIC_PROCESSNUCLEOBASENUCLEOSIDE_AND_NUCLEOTIDE_METABOLIC_PROCESS
G_PROTEIN_SIGNALING__ADENYLATE_CYCLASE_INHIBITING_PATHWAYG_PROTEIN_SIGNALING_ADENYLATE_CYCLASE_INHIBITING_PATHWAY
POSITIVE_REGULATION_OF_TRANSCRIPTION__DNA_DEPENDENTPOSITIVE_REGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT
G_PROTEIN_SIGNALING__COUPLED_TO_IP3_SECOND_MESSENGER__PHOSPHOLIPASE_C_ACTIVATINGG_PROTEIN_SIGNALING_COUPLED_TO_IP3_SECOND_MESSENGERPHOSPHOLIPASE_C_ACTIVATING
NUCLEOBASE__NUCLEOSIDE__NUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESSNUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS
NUCLEOBASE__NUCLEOSIDE__NUCLEOTIDE_AND_NUCLEIC_ACID_TRANSPORTNUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_TRANSPORT
TRANSCRIPTION__DNA_DEPENDENTTRANSCRIPTION_DNA_DEPENDENT
POSITIVE_REGULATION_OF_NUCLEOBASE__NUCLEOSIDE__NUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESSPOSITIVE_REGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS
NEGATIVE_REGULATION_OF_TRANSCRIPTION__DNA_DEPENDENTNEGATIVE_REGULATION_OF_TRANSCRIPTION_DNA_DEPENDENT
RNA_3__END_PROCESSINGRNA_3END_PROCESSING
G_PROTEIN_SIGNALING__COUPLED_TO_CAMP_NUCLEOTIDE_SECOND_MESSENGERG_PROTEIN_SIGNALING_COUPLED_TO_CAMP_NUCLEOTIDE_SECOND_MESSENGER
REGULATION_OF_TRANSCRIPTION__DNA_DEPENDENTREGULATION_OF_TRANSCRIPTIONDNA_DEPENDENT
G_PROTEIN_SIGNALING__ADENYLATE_CYCLASE_ACTIVATING_PATHWAYG_PROTEIN_SIGNALING_ADENYLATE_CYCLASE_ACTIVATING_PATHWAY
DNA_DAMAGE_RESPONSE__SIGNAL_TRANSDUCTIONDNA_DAMAGE_RESPONSESIGNAL_TRANSDUCTION
DNA_DAMAGE_RESPONSE__SIGNAL_TRANSDUCTION_RESULTING_IN_INDUCTION_OF_APOPTOSISDNA_DAMAGE_RESPONSESIGNAL_TRANSDUCTION_RESULTING_IN_INDUCTION_OF_APOPTOSIS
G_PROTEIN_SIGNALING__COUPLED_TO_CYCLIC_NUCLEOTIDE_SECOND_MESSENGERG_PROTEIN_SIGNALING_COUPLED_TO_CYCLIC_NUCLEOTIDE_SECOND_MESSENGER
REGULATION_OF_GENE_EXPRESSION__EPIGENETICREGULATION_OF_GENE_EXPRESSION_EPIGENETIC
RNA_SPLICING__VIA_TRANSESTERIFICATION_REACTIONSRNA_SPLICINGVIA_TRANSESTERIFICATION_REACTIONS
REGULATION_OF_NUCLEOBASE__NUCLEOSIDE__NUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESSREGULATION_OF_NUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_METABOLIC_PROCESS
DNA_DAMAGE_RESPONSE__SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATORDNA_DAMAGE_RESPONSESIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR
PROTEIN_IMPORT_INTO_NUCLEUS__TRANSLOCATIONPROTEIN_IMPORT_INTO_NUCLEUS_TRANSLOCATION
HYDROLASE_ACTIVITY__ACTING_ON_ACID_ANHYDRIDESHYDROLASE_ACTIVITY_ACTING_ON_ACID_ANHYDRIDES
TRANSFERASE_ACTIVITY__TRANSFERRING_ACYL_GROUPSTRANSFERASE_ACTIVITY_TRANSFERRING_ACYL_GROUPS
HEMATOPOIETIN_INTERFERON_CLASS__D200_DOMAIN__CYTOKINE_RECEPTOR_BINDINGHEMATOPOIETIN_INTERFERON_CLASSD200
OXIDOREDUCTASE_ACTIVITY__ACTING_ON_SULFUR_GROUP_OF_DONORSOXIDOREDUCTASE_ACTIVITY_ACTING_ON_SULFUR_GROUP_OF_DONORS
LIGASE_ACTIVITY__FORMING_CARBON_NITROGEN_BONDSLIGASE_ACTIVITY_FORMING_CARBON_NITROGEN_BONDS
PHOSPHOTRANSFERASE_ACTIVITY__ALCOHOL_GROUP_AS_ACCEPTORPHOSPHOTRANSFERASE_ACTIVITY_ALCOHOL_GROUP_AS_ACCEPTOR
PHOSPHOTRANSFERASE_ACTIVITY__PHOSPHATE_GROUP_AS_ACCEPTORPHOSPHOTRANSFERASE_ACTIVITY_PHOSPHATE_GROUP_AS_ACCEPTOR
HYDROLASE_ACTIVITY__ACTING_ON_CARBON_NITROGEN__BUT_NOT_PEPTIDE__BONDSHYDROLASE_ACTIVITY_ACTING_ON_CARBON_NITROGEN_NOT_PEPTIDEBONDS
RNA_SPLICING_FACTOR_ACTIVITY__TRANSESTERIFICATION_MECHANISMRNA_SPLICING_FACTOR_ACTIVITYTRANSESTERIFICATION_MECHANISM
METABOTROPIC_GLUTAMATE__GABA_B_LIKE_RECEPTOR_ACTIVITYMETABOTROPIC_GLUTAMATEGABA_B_LIKE_RECEPTOR_ACTIVITY
HYDROLASE_ACTIVITY__ACTING_ON_GLYCOSYL_BONDSHYDROLASE_ACTIVITY_ACTING_ON_GLYCOSYL_BONDS
HYDROLASE_ACTIVITY__HYDROLYZING_O_GLYCOSYL_COMPOUNDSHYDROLASE_ACTIVITY_HYDROLYZING_O_GLYCOSYL_COMPOUNDS
ATPASE_ACTIVITY__COUPLED_TO_TRANSMEMBRANE_MOVEMENT_OF_IONS__PHOSPHORYLATIVE_MECHANISMATPASE_ACTIVITY_COUPLED_TO_TRANSMEMBRANE_MOVEMENT_OF_IONS_PHOSPHORYLATIVE_MECHANISM
TRANSFERASE_ACTIVITY__TRANSFERRING_HEXOSYL_GROUPSTRANSFERASE_ACTIVITYTRANSFERRING_HEXOSYL_GROUPS
OXIDOREDUCTASE_ACTIVITY__ACTING_ON_THE_CH_NH_GROUP_OF_DONORSOXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_NH_GROUP_OF_DONORS
OXIDOREDUCTASE_ACTIVITY__ACTING_ON_PEROXIDE_AS_ACCEPTOROXIDOREDUCTASE_ACTIVITY_ACTING_ON_PEROXIDE_AS_ACCEPTOR
HYDROLASE_ACTIVITY__HYDROLYZING_N_GLYCOSYL_COMPOUNDSHYDROLASE_ACTIVITY_HYDROLYZING_N_GLYCOSYL_COMPOUNDS
HYDROLASE_ACTIVITY__ACTING_ON_ESTER_BONDSHYDROLASE_ACTIVITY_ACTING_ON_ESTER_BONDS
TRANSFERASE_ACTIVITY__TRANSFERRING_GLYCOSYL_GROUPSTRANSFERASE_ACTIVITY_TRANSFERRING_GLYCOSYL_GROUPS
STEROID_DEHYDROGENASE_ACTIVITY__ACTING_ON_THE_CH_OH_GROUP_OF_DONORS__NAD_OR_NADP_AS_ACCEPTORSTEROID_DEHYDROGENASE_ACTIVITY_ACTING_ON_THE_CH_OH_GROUP_OF_DONORSNAD_OR_NADP_AS_ACCEPTOR
HYDROLASE_ACTIVITY__ACTING_ON_ACID_ANHYDRIDES__CATALYZING_TRANSMEMBRANE_MOVEMENT_OF_SUBSTANCESHYDROLASE_ACTIVITY_ACTING_ON_ACID_ANHYDRIDESCATALYZING_TRANSMEMBRANE_MOVEMENT_OF_SUBSTANCES
RNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_ACTIVITY__ENHANCER_BINDINGRNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_ACTIVITYENHANCER_BINDING
3__5__CYCLIC_NUCLEOTIDE_PHOSPHODIESTERASE_ACTIVITY3_5_CYCLIC_NUCLEOTIDE_PHOSPHODIESTERASE_ACTIVITY
ATPASE_ACTIVITY__COUPLED_TO_TRANSMEMBRANE_MOVEMENT_OF_IONSATPASE_ACTIVITY_COUPLED_TO_TRANSMEMBRANE_MOVEMENT_OF_IONS
HYDROLASE_ACTIVITY__ACTING_ON_CARBON_NITROGEN__BUT_NOT_PEPTIDE__BONDS__IN_CYCLIC_AMIDINESHYDROLASE_ACTIVITY_ACTING_ON_CARBON_NITROGEN_NOT_PEPTIDEBONDSIN_CYCLIC_AMIDINES
ATPASE_ACTIVITY__COUPLEDATPASE_ACTIVITY_COUPLED
TRANSLATION_FACTOR_ACTIVITY__NUCLEIC_ACID_BINDINGTRANSLATION_FACTOR_ACTIVITY_NUCLEIC_ACID_BINDING
3__5__EXONUCLEASE_ACTIVITY3_5_EXONUCLEASE_ACTIVITY
TRANSFERASE_ACTIVITY__TRANSFERRING_ALKYL_OR_ARYL__OTHER_THAN_METHYL__GROUPSTRANSFERASE_ACTIVITY_TRANSFERRING_ALKYL_OR_ARYLOTHER_THAN_METHYLGROUPS
NUCLEOBASE__NUCLEOSIDE__NUCLEOTIDE_AND_NUCLEIC_ACID_TRANSMEMBRANE_TRANSPORTER_ACTIVITYNUCLEOBASENUCLEOSIDENUCLEOTIDE_AND_NUCLEIC_ACID_TRANSMEMBRANE_TRANSPORTER_ACTIVITY
LIGASE_ACTIVITY__FORMING_CARBON_OXYGEN_BONDSLIGASE_ACTIVITY_FORMING_CARBON_OXYGEN_BONDS
PROTEIN_BINDING__BRIDGINGPROTEIN_BINDING_BRIDGING
OXIDOREDUCTASE_ACTIVITY__ACTING_ON_THE_CH_CH_GROUP_OF_DONORSOXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS
TRANSFERASE_ACTIVITY__TRANSFERRING_ONE_CARBON_GROUPSTRANSFERASE_ACTIVITY_TRANSFERRING_ONE_CARBON_GROUPS
OXIDOREDUCTASE_ACTIVITY__ACTING_ON_NADH_OR_NADPHOXIDOREDUCTASE_ACTIVITY_ACTING_ON_NADH_OR_NADPH
HEMATOPOIETIN_INTERFERON_CLASS__D200_DOMAIN__CYTOKINE_RECEPTOR_ACTIVITYDOMAIN_CYTOKINE_RECEPTOR_ACTIVITY
OXIDOREDUCTASE_ACTIVITY__ACTING_ON_THE_ALDEHYDE_OR_OXO_GROUP_OF_DONORSOXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_ALDEHYDE_OR_OXO_GROUP_OF_DONORS
TRANSFERASE_ACTIVITY__TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPSTRANSFERASE_ACTIVITY_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS
NUCLEOBASE__NUCLEOSIDE__NUCLEOTIDE_KINASE_ACTIVITYNUCLEOBASENUCLEOSIDENUCLEOTIDE_KINASE_ACTIVITY
TRANSFERASE_ACTIVITY__TRANSFERRING_PENTOSYL_GROUPSTRANSFERASE_ACTIVITY_TRANSFERRING_PENTOSYL_GROUPS
OXIDOREDUCTASE_ACTIVITY__ACTING_ON_CH_OH_GROUP_OF_DONORSOXIDOREDUCTASE_ACTIVITY_ACTING_ON_CH_OH_GROUP_OF_DONORS
OXIDOREDUCTASE_ACTIVITY__ACTING_ON_THE_ALDEHYDE_OR_OXO_GROUP_OF_DONORS__NAD_OR_NADP_AS_ACCEPTOROXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_ALDEHYDE_OR_OXO_GROUP_OF_DONORSNAD_OR_NADP_AS_ACCEPTOR
TRANSFERASE_ACTIVITY__TRANSFERRING_SULFUR_CONTAINING_GROUPSTRANSFERASE_ACTIVITY_TRANSFERRING_SULFUR_CONTAINING_GROUPS
HYDROLASE_ACTIVITY__ACTING_ON_CARBON_NITROGEN__BUT_NOT_PEPTIDE__BONDS__IN_LINEAR_AMIDESHYDROLASE_ACTIVITY_ACTING_ON_CARBON_NITROGEN_NOT_PEPTIDEBONDSIN_LINEAR_AMIDES
ATPASE_ACTIVITY__COUPLED_TO_MOVEMENT_OF_SUBSTANCESATPASE_ACTIVITY_COUPLED_TO_MOVEMENT_OF_SUBSTANCES
TRANSFERASE_ACTIVITY__TRANSFERRING_GROUPS_OTHER_THAN_AMINO_ACYL_GROUPSTRANSFERASE_ACTIVITY_TRANSFERRING_GROUPS_OTHER_THAN_AMINO_ACYL_GROUPS
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