Software Acknowledgements

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             <p><font size="3">[http://www.jidesoft.com </font><font size="3">jidesoft.com</font><font size="3">]</font></p>
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             <p><font size="3">[http://www.jidesoft.com www.</font><font size="3">jidesoft.com</font><font size="3">]</font></p>
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             <p><font size="3">[http://java.sun.com/ </font><font size="3">java.sun.com/</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://java.sun.com/ </font><font size="3">java.sun.com</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://www.r-project.org/index.html </font><font size="3">www.r-project.org/index.html</font><font size="3">]</font></p>
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             <p><font size="3">[http://www.r-project.org/index.html </font><font size="3">www.r-project.org</font><font size="3">]</font></p>
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             <p><font size="3">[http://www.intellij.com/idea/]&nbsp;</font></p>
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             <p><font size="3">[http://www.intellij.com/idea/ </font><font size="3">www.intellij.com/idea</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://www.jgoodies.com/]</font></p>
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             <p><font size="3">[http://www.jgoodies.com/ </font><font size="3">www.jgoodies.com</font><font size="3">]</font></p>
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             <p><font size="3">&nbsp;[http://foxtrot.sourceforge.net/docs/introduction.php]&nbsp;</font></p>
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             <p><font size="3">&nbsp;[http://foxtrot.sourceforge.net/docs/introduction.php </font><font size="3">foxtrot.sourceforge.net</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://www.dom4j.org/]&nbsp;</font></p>
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             <p><font size="3">[http://www.dom4j.org/ </font><font size="3">www.dom4j.org</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://www.lowagie.com/iText/]</font></p>
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             <p><font size="3">[http://www.lowagie.com/iText/ </font><font size="3">www.lowagie.com/iText</font><font size="3">]</font></p>
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             <p><font size="3">[http://jakarta.apache.org/poi/hssf/index.html]&nbsp;</font></p>
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             <p><font size="3">[http://jakarta.apache.org/poi/hssf/index.html </font><font size="3">jakarta.apache.org/poi</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://www.object-refinery.com/jfreechart/]&nbsp;</font></p>
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             <p><font size="3">[http://www.object-refinery.com/jfreechart/ </font><font size="3">www.object-refinery.com/jfreechart</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://www.junit.org/index.htm]&nbsp;</font></p>
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             <p><font size="3">[http://www.junit.org/index.htm </font><font size="3">www.junit.org</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://jakarta.apache.org/log4j/docs/]&nbsp;</font></p>
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             <p><font size="3">[http://jakarta.apache.org/log4j/docs/ </font><font size="3">jakarta.apache.org/log4j</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://jakarta.apache.org/oro/]&nbsp;</font></p>
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             <p><font size="3">[http://jakarta.apache.org/oro/ </font><font size="3">jakarta.apache.org/oro</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://trove4j.sourceforge.net/]&nbsp;</font></p>
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             <p><font size="3">[http://trove4j.sourceforge.net/ </font><font size="3">trove4j.sourceforge.net</font><font size="3">]&nbsp;</font></p>
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             <p><font size="3">[http://jakarta.apache.org/ecs/]</font></p>
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             <p><font size="3">[http://jakarta.apache.org/ecs/ </font><font size="3">jakarta.apache.org</font><font size="3">]</font></p>
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             <p><font size="3">[http://home.snafu.de/tilman/xenulink.html]</font></p>
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             <p><font size="3">[http://home.snafu.de/tilman/xenulink.html </font><font size="3">home.snafu.de/tilman/xenulink</font><font size="3">]</font></p>
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             <p><font size="3">[http://www.zerog.com/]</font></p>
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             <p><font size="3">[http://www.zerog.com/ </font><font size="3">www.zerog.com</font><font size="3">]</font></p>
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Revision as of 19:39, 28 March 2006

GSEA implementations use many software tools and libraries, several of which are open source and/or freely available. Our thanks to their developers.

<tbody> </tbody>

Jide Software

Java/Swing components

www.jidesoft.com

The Java 2 Platform

image:duke.gif

Language that the GSEA desktop application is written in

java.sun.com 

The R programming language

image:Rlogo.jpg

Language that the GSEAP-P-R is written in

www.r-project.org

 Intellij IDEA

image:idea.png

An awesome integrated development environment for Java

www.intellij.com/idea 

JGoodies

Forms layout and java look and feel

www.jgoodies.com

foxtrot

Java event handling mechanism for GUI's.

 foxtrot.sourceforge.net 

dom4j

XML Parser

www.dom4j.org 

itext

image:itext.gif

Java PDF library

www.lowagie.com/iText

<st1:place w:st="on"><st1:city w:st="on">jakarta</st1:city></st1:place> POI (especially HSSF)

image: poi-logo.png

Java excel reporting

jakarta.apache.org/poi 

JFreeChart

image: jfreechart.png

Graphing library for Java

www.object-refinery.com/jfreechart 

JUnit

image: junit.gif

Unit testing API

www.junit.org 

log4j

image:log4j.jpg

Logging toolkit for Java

jakarta.apache.org/log4j 

Oro

Regular expressions library in Java

jakarta.apache.org/oro 

Trove

High performance collections library from GNU

trove4j.sourceforge.net 

ECS

Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)

jakarta.apache.org

Xenu link sleuth

Website broken link checker

home.snafu.de/tilman/xenulink

InstallAnywhere

Java installation program builder

www.zerog.com

<o:p> </o:p>

Personal tools