Software Acknowledgements

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             <td><a href="http://www.jidesoft.com jidesoft.com">Jide Software</a></td>
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<a href="http://www.jidesoft.com jidesoft.com">Jide Software</a></td>
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             <td>Java/Swing components</td>
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             <td><a href="http://www.oracle.com/technetwork/java/index.html http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform</td>
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<a href="http://www.oracle.com/technetwork/java/index.html http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform<br>
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[[image:duke.gif]]</td>
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             <td>Language that the GSEA desktop application is written in</td>
             <td>Language that the GSEA desktop application is written in</td>
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            <td>[[image:duke.gif]]</td>
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             <td><a href="http://www.r-project.org/index.html www.r-project.org">The R programming language</a></td>
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<a href="http://www.r-project.org/index.html www.r-project.org">The R programming language</a><br>
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[[image:Rlogo.jpg]]</td>
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             <td>Language that the GSEAP-P-R is written in</td>
             <td>Language that the GSEAP-P-R is written in</td>
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            <td>[[image:Rlogo.jpg]]</td>
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             <td>Intellij IDEA<br>[[image:idea.png]]</td>
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             <td><a href="http://www.intellij.com/idea/">Intellij IDEA</a><br>
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                    [[image:idea.png]]</td>
             <td>An awesome integrated development environment for Java</td>
             <td>An awesome integrated development environment for Java</td>
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            <td>[http://www.intellij.com/idea/ www.intellij.com/idea]</td>
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             <td>JGoodies</td>
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             <td><a href="http://www.jgoodies.com/ www.jgoodies.com">JGoodies</a></td>
             <td>Forms layout and java look and feel</td>
             <td>Forms layout and java look and feel</td>
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             <td>[http://www.jgoodies.com/ www.jgoodies.com]</td>
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             <td><a href="http://foxtrot.sourceforge.net/docs/introduction.php">foxtrot</a></td>
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            <td>Java event handling mechanism for GUI's.</td>
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             <td><a href="http://www.dom4j.org/">dom4j</a></td>
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            <p><font size="3">foxtrot</font></p>
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             <td>XML Parser</td>
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            <p><font size="3">Java event handling mechanism for GUI's.</font></p>
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            <p><font size="3">&nbsp;[http://foxtrot.sourceforge.net/docs/introduction.php </font><font size="3">foxtrot.sourceforge.net</font><font size="3">]&nbsp;</font></p>
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            <p><font size="3">dom4j</font></p>
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            <p><font size="3">XML Parser</font></p>
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            <p><font size="3">[http://www.dom4j.org/ </font><font size="3">www.dom4j.org</font><font size="3">]&nbsp;</font></p>
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Revision as of 19:14, 16 October 2012

<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> | <a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> | <a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> | <a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> | <a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>

GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.

<tbody> </tbody>
<a href="http://www.jidesoft.com jidesoft.com">Jide Software</a> Java/Swing components
<a href="http://www.oracle.com/technetwork/java/index.html http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform Language that the GSEA desktop application is written in image:duke.gif
<a href="http://www.r-project.org/index.html www.r-project.org">The R programming language</a> Language that the GSEAP-P-R is written in image:Rlogo.jpg
<a href="http://www.intellij.com/idea/">Intellij IDEA</a>
image:idea.png
An awesome integrated development environment for Java
<a href="http://www.jgoodies.com/ www.jgoodies.com">JGoodies</a> Forms layout and java look and feel
<a href="http://foxtrot.sourceforge.net/docs/introduction.php">foxtrot</a> Java event handling mechanism for GUI's.
<a href="http://www.dom4j.org/">dom4j</a> XML Parser

itext

image:itext.gif

Java PDF library

www.lowagie.com/iText

Jakarta POI

(especially HSSF)

image: poi-logo.png

Java excel reporting

jakarta.apache.org/poi 

JFreeChart

image: jfreechart.png

Graphing library for Java

www.object-refinery.com/jfreechart 

JUnit

image: junit.gif

Unit testing API

www.junit.org 

log4j

image:log4j.jpg

Logging toolkit for Java

jakarta.apache.org/log4j 

Oro

Regular expressions library in Java

jakarta.apache.org/oro 

Trove

High performance collections library from GNU

trove4j.sourceforge.net 

ECS

Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)

jakarta.apache.org

Xenu link sleuth

Website broken link checker

home.snafu.de/tilman/xenulink

Personal tools